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  • 1
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    Toward an adequate level of detail in flood risk assessments (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2024-01-24
    Beschreibung: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Flood risk assessments require different disciplines to understand and model the underlying components hazard, exposure, and vulnerability. Many methods and data sets have been refined considerably to cover more details of spatial, temporal, or process information. We compile case studies indicating that refined methods and data have a considerable effect on the overall assessment of flood risk. But are these improvements worth the effort? The adequate level of detail is typically unknown and prioritization of improvements in a specific component is hampered by the lack of an overarching view on flood risk. Consequently, creating the dilemma of potentially being too greedy or too wasteful with the resources available for a risk assessment. A “sweet spot” between those two would use methods and data sets that cover all relevant known processes without using resources inefficiently. We provide three key questions as a qualitative guidance toward this “sweet spot.” For quantitative decision support, more overarching case studies in various contexts are needed to reveal the sensitivity of the overall flood risk to individual components. This could also support the anticipation of unforeseen events like the flood event in Germany and Belgium in 2021 and increase the reliability of flood risk assessments.〈/p〉
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Beschreibung: BMBF http://dx.doi.org/10.13039/501100002347
    Beschreibung: Federal Environment Agency http://dx.doi.org/10.13039/501100010809
    Beschreibung: http://howas21.gfz-potsdam.de/howas21/
    Beschreibung: https://www.umwelt.niedersachsen.de/startseite/themen/wasser/hochwasser_amp_kustenschutz/hochwasserrisikomanagement_richtlinie/hochwassergefahren_und_hochwasserrisikokarten/hochwasserkarten-121920.html
    Beschreibung: https://download.geofabrik.de/europe/germany.html
    Beschreibung: https://emergency.copernicus.eu/mapping/list-of-components/EMSN024
    Beschreibung: https://data.jrc.ec.europa.eu/collection/id-0054
    Beschreibung: https://oasishub.co/dataset/surface-water-flooding-footprinthurricane-harvey-august-2017-jba
    Beschreibung: https://www.wasser.sachsen.de/hochwassergefahrenkarte-11915.html
    Schlagwort(e): ddc:551.48 ; decision support ; extreme events ; integrated flood risk management ; risk assessment
    Sprache: Englisch
    Materialart: doc-type:article
    Standort Signatur Erwartet Verfügbarkeit
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  • 2
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    Small lateral air pressure gradients generated by a large chamber system have a strong effect on CO2 transport in soil (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2024-02-09
    Beschreibung: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Gas transport in soils is usually assumed to be purely diffusive, although several studies have shown that non‐diffusive processes can significantly enhance soil gas transport. These processes include barometric air pressure changes, wind‐induced pressure pumping and static air pressure fields generated by wind interacting with obstacles. The associated pressure gradients in the soil can cause advective gas fluxes that are much larger than diffusive fluxes. However, the contributions of the respective transport processes are difficult to separate. We developed a large chamber system to simulate pressure fields and investigate their influence on soil gas transport. The chamber consists of four subspaces in which pressure is regulated by fans that blow air in or out of the chamber. With this setup, we conducted experiments with oscillating and static pressure fields. CO〈sub〉2〈/sub〉 concentrations were measured along two soil profiles beneath the chamber. We found a significant relationship between static lateral pressure gradients and the change in the CO〈sub〉2〈/sub〉 profiles (R〈sup〉2〈/sup〉 = 0.53; 〈italic toggle="no"〉p〈/italic〉‐value 〈2e‐16). Even small pressure gradients between −1 and 1 Pa relative to ambient pressure resulted in an increase or decrease in CO〈sub〉2〈/sub〉 concentrations of 8% on average in the upper soil, indicating advective flow of air in the pore space. Positive pressure gradients resulted in decreasing, negative pressure gradients in increasing CO〈sub〉2〈/sub〉 concentrations. The concentration changes were probably caused by an advective flow field in the soil beneath the chamber generated by the pressure gradients. No effect of oscillating pressure fields was observed in this study. The results indicate that static lateral pressure gradients have a substantial impact on soil gas transport and therefore are an important driver of gas exchange between soil and atmosphere. Lateral pressure gradients in a comparable range can be induced under windy conditions when wind interacts with terrain features. They can also be caused by chambers used for flux measurements at high wind speed or by fans used for head‐space mixing within the chambers, which yields biased flux estimates.〈/p〉
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Schlagwort(e): ddc:631.4 ; advective flux ; chamber flux measurements ; static air pressure fields ; wind‐induced pressure pumping
    Sprache: Englisch
    Materialart: doc-type:article
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  • 3
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    Redoxtrons – An experimental system to study redox processes within the capillary fringe (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2023-11-18
    Beschreibung: Spatiotemporal characterisation of the soil redox status within the capillary fringe (CF) is a challenging task. Air‐filled porosities (ε), oxygen concentration (O〈sub〉2〈/sub〉) and soil redox potential (EH) are interrelated soil variables within active biogeochemical domains such as the CF. We investigated the impact of water table (WT) rise and drainage in an undisturbed topsoil and subsoil sample taken from a Calcaric Gleysol for a period of 46 days. We merged 1D (EH and matric potential) and 2D (O〈sub〉2〈/sub〉) systems to monitor at high spatiotemporal resolution redox dynamics within self‐constructed redoxtron housings and complemented the data set by a 3D pore network characterization using X‐ray microtomography (X‐ray μCT). Depletion of O〈sub〉2〈/sub〉 was faster in the organic matter‐ and clay‐rich aggregated topsoil and the CF extended 〉10 cm above the artificial WT. The homogeneous and less‐aggregated subsoil extended only 4 cm above the WT as indicated by ε–O〈sub〉2〈/sub〉–EH data during saturation. After drainage, 2D O〈sub〉2〈/sub〉 imaging revealed a fast aeration towards the lower depths of the topsoil, which agrees with the connected ε derived by X‐ray μCT (ε〈sub〉CT_conn〈/sub〉) of 14.9% of the total porosity. However, small‐scaled anoxic domains with O〈sub〉2〈/sub〉 saturation 〈5% were apparent even after lowering the WT (down to 0.25 cm〈sup〉2〈/sup〉 in size) for 23 days. These domains remained a nucleus for reducing soil conditions (E〈sub〉H〈/sub〉 〈 −100 mV), which made it challenging to characterise the soil redox status in the CF. In contrast, the subsoil aeration reached O〈sub〉2〈/sub〉 saturation after 8 days for the complete soil volume. Values of ε〈sub〉CT_conn〈/sub〉 around zero in the subsoil highlighted that soil aeration was independent of this parameter suggesting that other variables such as microbial activity must be considered when predicting the soil redox status from ε alone. The use of redoxtrons in combination with localised redox‐measurements and image based pore space analysis resulted in a better 2D/3D characterisation of the pore system and related O〈sub〉2〈/sub〉 transport properties. This allowed us to analyse the distribution and activity of microbiological niches highly associated with the spatiotemporal variable redox dynamics in soil environments. Highlights: The time needed to turn from reducing to oxidising (period where all platinum electrodes feature E〈sub〉H〈/sub〉 〉 300 mV) condition differ for two samples with contrasting soil structure. The subsoil with presumably low O〈sub〉2〈/sub〉 consumption rates aerated considerably faster than the topsoil and exclusively by O〈sub〉2〈/sub〉 diffusion through medium‐ and fine‐sized pores. To derive the soil redox status based upon the triplet ε–O〈sub〉2〈/sub〉–E〈sub〉H〈/sub〉 is challenging at present in heterogeneous soil domains and larger soil volumes than 250 cm〈sup〉3〈/sup〉. Undisturbed soil sampling along with 2D/3D redox measurement systems (e.g., redoxtrons) improve our understanding of redox dynamics within the capillary fringe.
    Schlagwort(e): ddc:631.4 ; environmental monitoring ; incubation experiments ; redox processes ; soil reducing conditions ; undisturbed soil ; X‐ray microtomography
    Sprache: Englisch
    Materialart: doc-type:article
    Standort Signatur Erwartet Verfügbarkeit
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  • 4
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    The dilemma of analytical method changes for soil organic carbon in long‐term experiments (2023)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2023-11-17
    Beschreibung: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈sec xmlns:mml="http://www.w3.org/1998/Math/MathML" id="ejss13362-sec-1003" xml:lang="en"〉 〈p xml:lang="en"〉Long‐term experiments (LTEs) have provided data to modellers and agronomists to investigate changes and dynamics of soil organic carbon (SOC) under different cropping systems. As treatment changes have occurred due to agricultural advancements, so too have analytical soil methods. This may lead to method bias over time, which could affect the robust interpretation of data and conclusions drawn. This study aims to quantify differences in SOC due to changes in dry combustion methods over time, using soil samples of a LTE established in 1963 that focuses on mineral and organic fertilizer management in the temperate zone of Northeast Germany. For this purpose, 1059 soil samples, collected between 1976 and 2008, have been analysed twice, once with their historical laboratory method right after sampling, and a second time in 2016 when all samples were analysed using the same elementary analyser. In 9 of 11 soil sampling campaigns, a paired 〈italic toggle="no"〉t〈/italic〉‐test provided evidence for significant differences in the historical SOC values when compared with the re‐analysed concentrations of the same LTE sample. In the sampling years 1988 and 2004, the historical analysis obtained about 0.9 g kg〈sup〉−1〈/sup〉 lower SOC compared with the re‐analysed one. For 1990 and 1998, this difference was about 0.4 g kg〈sup〉−1〈/sup〉. Correction factors, an approach often used to correct for different analytical techniques, could only be applied for 5 of 11 sampling campaigns to account for constant and proportional systematic method error. For this particular LTE, the interpretation of SOC changes due to agronomic management (here fertilization) deviates depending on the analytical method used, which may weaken the explanatory power of the historical data. We demonstrate that analytical method changes over time present one of many challenges in the interpretation of time series data of SOC dynamics. Therefore, LTE site managers need to ensure providing all necessary protocols and data in order to retrace method changes and if necessary recalculate SOC.〈/p〉 〈/sec〉〈sec xmlns:mml="http://www.w3.org/1998/Math/MathML" id="ejss13362-sec-0003" xml:lang="en"〉 〈title〉Highlights〈/title〉 〈p xml:lang="en"〉〈list list-type="bullet" id="ejss13362-list-0001"〉 〈list-item id="ejss13362-li-0001"〉〈p〉A total of 1059 LTE soil samples taken between 1976 and 2008 were re‐analysed for SOC in 2016〈/p〉〈/list-item〉 〈list-item id="ejss13362-li-0002"〉〈p〉Several methodological changes for SOC determination led to significant different SOC concentration in the same sample〈/p〉〈/list-item〉 〈list-item id="ejss13362-li-0003"〉〈p〉Interpretation and time series of LTE soil data suffer from consideration of analytical method changes and poor documentation of the same〈/p〉〈/list-item〉 〈list-item id="ejss13362-li-0004"〉〈p〉Soil archive establishment, thorough method protocols and diligent proficiency testing after soil method changes ameliorate the dilemma〈/p〉〈/list-item〉 〈/list〉〈/p〉 〈/sec〉
    Beschreibung: Brandenburger Staatsministerium für Wissenschaft, Forschung und Kultur http://dx.doi.org/10.13039/501100004581
    Beschreibung: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100004937
    Beschreibung: https://doi.org/10.4228/zalf-acge-b683
    Schlagwort(e): ddc:631.4 ; Bland–Altman ; carbon stocks ; data trueness ; Deming regression ; method bias ; soil archive ; soil survey
    Sprache: Englisch
    Materialart: doc-type:article
    Standort Signatur Erwartet Verfügbarkeit
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  • 5
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    Optimised use of data fusion and memory‐based learning with an Austrian soil library for predictions with infrared data (2023)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2023-12-12
    Beschreibung: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Infrared spectroscopy in the visible to near‐infrared (vis–NIR) and mid‐infrared (MIR) regions is a well‐established approach for the prediction of soil properties. Different data fusion and training approaches exist, and the optimal procedures are yet undefined and may depend on the heterogeneity present in the set and on the considered scale. The objectives were to test the usefulness of partial least squares regressions (PLSRs) for soil organic carbon (SOC), total carbon (C〈sub〉t〈/sub〉), total nitrogen (N〈sub〉t〈/sub〉) and pH using vis–NIR and MIR spectroscopy for an independent validation after standard calibration (use of a general PLSR model) or using memory‐based learning (MBL) with and without spiking for a national spectral database. Data fusion approaches were simple concatenation of spectra, outer product analysis (OPA) and model averaging. In total, 481 soils from an Austrian forest soil archive were measured in the vis–NIR and MIR regions, and regressions were calculated. Fivefold calibration‐validation approaches were carried out with a region‐related split of spectra to implement independent validations with n ranging from 47 to 99 soils in different folds. MIR predictions were generally superior over vis–NIR predictions. For all properties, optimal predictions were obtained with data fusion, with OPA and spectra concatenation outperforming model averaging. The greatest robustness of performance was found for OPA and MBL with spiking with 〈italic toggle="no"〉R〈/italic〉〈sup〉2〈/sup〉 ≥ 0.77 (N), 0.85 (SOC), 0.86 (pH) and 0.88 (C〈sub〉t〈/sub〉) in the validations of all folds. Overall, the results indicate that the combination of OPA for vis–NIR and MIR spectra with MBL and spiking has a high potential to accurately estimate properties when using large‐scale soil spectral libraries as reference data. However, the reduction of cost‐effectiveness using two spectrometers needs to be weighed against the potential increase in accuracy compared to a single MIR spectroscopy approach.〈/p〉
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Schlagwort(e): ddc:631.4 ; data fusion ; independent validation ; infrared spectroscopy ; MBL ; nitrogen ; outer product analysis ; pH ; soil organic carbon ; spiking ; total carbon
    Sprache: Englisch
    Materialart: doc-type:article
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  • 6
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    Importance of catchment hydrological processes and calibration of hydrological‐hydrodynamic rainfall‐runoff models in small rural catchments (2023)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2024-01-19
    Beschreibung: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉In recent years, many two‐dimensional (2D) hydrodynamic models have been extended to include the direct rainfall method (DRM). This allows their application as a hydrological‐hydrodynamic model for the determination of floodplains in one model system. In previous studies on DRM, the role of catchment hydrological processes (CaHyPro) and its interaction with the calibration process was not investigated in detail. In the present, case‐oriented study, the influence of the spatiotemporal distribution of the processes precipitation and runoff formation in combination with the 2D model HEC‐RAS is investigated. In a further step, a conceptual approach for event‐based interflow is integrated. The study is performed on the basis of a single storm event in a small rural catchment (low mountain range, 38 km〈sup〉2〈/sup〉) in Hesse (Germany). The model results are evaluated against six quality criteria and compared to a simplified baseline model. Finally, the calibrated improved model is contrasted with a calibrated baseline model. The results show the enhancement of the model results due to the integration of the CaHyPro and highlight its interplay with the calibrated model parameters.〈/p〉
    Schlagwort(e): ddc:551.48 ; 2D hydrodynamic modeling ; calibration ; direct rainfall modeling ; hydrological processes ; radar data ; runoff formation
    Sprache: Englisch
    Materialart: doc-type:article
    Standort Signatur Erwartet Verfügbarkeit
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  • 7
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    BODIUM—A systemic approach to model the dynamics of soil functions (2023)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2024-01-26
    Beschreibung: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉The increasing demand for biomass for food, animal feed, fibre and bioenergy requires optimization of soil productivity, while at the same time, protecting other soil functions such as nutrient cycling and buffering, carbon storage, habitat for biological activity and water filter and storage. Therefore, one of the main challenges for sustainable agriculture is to produce high yields while maintaining all the other soil functions. Mechanistic simulation models are an essential tool to fully understand and predict the complex interactions between physical, biological and chemical processes of soils that generate those functions. We developed a soil model to simulate the impact of various agricultural management options and climate change on soil functions by integrating the relevant processes mechanistically and in a systemic way. As a special feature, we include the dynamics of soil structure induced by tillage and biological activity, which is especially relevant in arable soils. The model operates on a 1D soil profile consisting of a number of discrete layers with dynamic thickness. We demonstrate the model performance by simulating crop growth, root growth, nutrient and water uptake, nitrogen cycling, soil organic matter turnover, microbial activity, water distribution and soil structure dynamics in a long‐term field experiment including different crops and different types and levels of fertilization. The model is able to capture essential features that are measured regularly including crop yield, soil organic carbon, and soil nitrogen. In this way, the plausibility of the implemented processes and their interactions is confirmed. Furthermore, we present the results of explorative simulations comparing scenarios with and without tillage events to analyse the effect of soil structure on soil functions. Since the model is process‐based, we are confident that the model can also be used to predict quantities that have not been measured or to estimate the effect of management measures and climate states not yet been observed. The model thus has the potential to predict the site‐specific impact of management decisions on soil functions, which is of great importance for the development of a sustainable agriculture that is currently also on the agenda of the ‘Green Deal’ at the European level.〈/p〉
    Beschreibung: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Beschreibung: https://git.ufz.de/bodium/bodium_v1.0
    Schlagwort(e): ddc:631.4 ; agriculture ; computational model ; simulation ; soil microbiology ; soil structure ; sustainable soil
    Sprache: Englisch
    Materialart: doc-type:article
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  • 8
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    Temperature and soil moisture change microbial allocation of pesticide‐derived carbon (2023)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2024-03-18
    Beschreibung: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Temperature and soil moisture are known to control pesticide mineralization. Half‐life times (DT〈sub〉50〈/sub〉) derived from pesticide mineralization curves generally indicate longer residence times at low soil temperature and moisture but do not consider potential changes in the microbial allocation of pesticide‐derived carbon (C). We aimed to determine carbon use efficiency (CUE, formation of new biomass relative to total C uptake) to better understand microbial utilization of pesticide‐derived C under different environmental conditions and to support the conventional description of degradation dynamics based on mineralization. We performed a microcosm experiment at two MCPA (2‐methyl‐4‐chlorophenoxyacetic acid) concentrations (1 and 20 mg kg〈sup〉−1〈/sup〉) and defined 20°C/pF 1.8 as optimal and 10°C/pF 3.5 as limiting environmental conditions. After 4 weeks, 70% of the initially applied MCPA was mineralized under optimal conditions but MCPA mineralization reached less than 25% under limiting conditions. However, under limiting conditions, an increase in CUE was observed, indicating a shift towards anabolic utilization of MCPA‐derived C. In this case, increased C assimilation implied C storage or the formation of precursor compounds to support resistance mechanisms, rather than actual growth since we did not find an increase in the 〈italic toggle="no"〉tfdA〈/italic〉 gene relevant to MCPA degradation. We were able to confirm the assumption that under limiting conditions, C assimilation increases relative to mineralization and that C redistribution, may serve as an explanation for the difference between mineralization and MCPA dissipation‐derived degradation dynamics. In addition, by introducing CUE to the temperature‐ and moisture‐dependent degradation of pesticides, we can capture the underlying microbial constraints and adaptive mechanisms to changing environmental conditions.〈/p〉
    Beschreibung: 〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Changing environmental conditions alter the MCPA degradation dynamics and the allocation of pesticide‐derived carbon to anabolic or catabolic metabolism.〈boxed-text position="anchor" content-type="graphic" id="ejss13417-blkfxd-0001" xml:lang="en"〉 〈graphic position="anchor" id="jats-graphic-1" xlink:href="urn:x-wiley:13510754:media:ejss13417:ejss13417-toc-0001"〉 〈/graphic〉 〈/boxed-text〉〈/p〉
    Beschreibung: Collaborative Research Center 1253 CAMPOS (DFG)
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Beschreibung: DFG Priority Program 2322 “Soil System”
    Beschreibung: Ellrichshausen Foundation
    Beschreibung: Research Training Group “Integrated Hydrosystem modeling”
    Beschreibung: https://doi.org/10.5281/zenodo.5081655
    Schlagwort(e): ddc:631.4 ; anabolism ; carbon use efficiency ; catabolism ; effect of soil moisture and temperature ; gene‐centric process model ; MCPA biodegradation
    Sprache: Englisch
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  • 9
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    Body condition of larval roundherring, Gilchristella aestuaria (family Clupeidae), in relation to harmful algal blooms in a warm-temperate estuary (2023)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: Eutrophication-driven harmful algal blooms (HABs) can have secondary effects on larval fishes that rely on estuaries as nurseries. However, few studies worldwide have quantified these effects despite the global rise in eutrophication. This study presents a novel approach using biochemical body condition analyses to evaluate the impact of HABs on the growth and body condition of the larvae of an estuarine resident fish. Recurrent phytoplankton blooms of Heterosigma akashiwo occur in the warm-temperate Sundays Estuary on the southeast coast of South Africa. The response in body condition and assemblage structure on larval estuarine roundherring (Gilchristella aestuaria) was measured in conjunction with bloom conditions, water quality and zooplanktonic prey and predators. Larvae and early juveniles were sampled during varying intensity levels, duration and frequency of hypereutrophic blooms. This study demonstrated that extensive HABs could significantly impact larval roundherring, G. aestuaria, by decreasing larval nutritional condition and limiting their growth, resulting in poor grow-out into the juvenile phase. Poor condition and growth may likely affect recruitment success to adult populations, and since G. aestuaria is an important forage fish and zooplanktivore, poor recruitment will hold consequences for estuarine food webs.
    Materialart: Article , PeerReviewed
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  • 10
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    Developing an Observing Air–Sea Interactions Strategy (OASIS) for the global ocean (2023)
    Oxford Univ. Press
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    Publikationsdatum: 2024-04-08
    Beschreibung: The Observing Air–Sea Interactions Strategy (OASIS) is a new United Nations Decade of Ocean Science for Sustainable Development programme working to develop a practical, integrated approach for observing air–sea interactions globally for improved Earth system (including ecosystem) forecasts, CO2 uptake assessments called for by the Paris Agreement, and invaluable surface ocean information for decision makers. Our “Theory of Change” relies upon leveraged multi-disciplinary activities, partnerships, and capacity strengthening. Recommendations from 〉40 OceanObs’19 community papers and a series of workshops have been consolidated into three interlinked Grand Ideas for creating #1: a globally distributed network of mobile air–sea observing platforms built around an expanded array of long-term time-series stations; #2: a satellite network, with high spatial and temporal resolution, optimized for measuring air–sea fluxes; and #3: improved representation of air–sea coupling in a hierarchy of Earth system models. OASIS activities are organized across five Theme Teams: (1) Observing Network Design & Model Improvement; (2) Partnership & Capacity Strengthening; (3) UN Decade OASIS Actions; (4) Best Practices & Interoperability Experiments; and (5) Findable–Accessible–Interoperable–Reusable (FAIR) models, data, and OASIS products. Stakeholders, including researchers, are actively recruited to participate in Theme Teams to help promote a predicted, safe, clean, healthy, resilient, and productive ocean.
    Materialart: Article , PeerReviewed
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  • 11
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    Inspecting the Reliability of Geochemical Facies Identified for the Waterworks' Capture Zone in Germany (2022)
    Blackwell Publishing Ltd | Malden, US
    Details
    Publikationsdatum: 2022-09-27
    Beschreibung: Little research attention has been given to validating clusters obtained from the groundwater geochemistry of the waterworks' capture zone with a prevailing lake‐groundwater exchange. To address this knowledge gap, we proposed a new scheme whereby Gaussian finite mixture modeling (GFMM) and Spike‐and‐Slab Bayesian (SSB) algorithms were utilized to cluster the groundwater geochemistry while quantifying the probability of the resulting cluster membership against each other. We applied GFMM and SSB to 13 geochemical parameters collected during different sampling periods at 13 observation points across the Barnim Highlands plateau located in the northeast of Berlin, Germany; this included 10 observation wells, two lakes, and a gallery of drinking production wells. The cluster analysis of GFMM yielded nine clusters, either with a probability ≥0.8, while the SSB produced three hierarchical clusters with a probability of cluster membership varying from 〈0.2 to 〉0.8. The findings demonstrated that the clustering results of GFMM were in good agreement with the classification as per the principal component analysis and Piper diagram. By superimposing the parameter clustering onto the observation clustering, we could identify discrepancies that exist among the parameters of a certain cluster. This enables the identification of different factors that may control the geochemistry of a certain cluster, although parameters of that cluster share a strong similarity. The GFMM results have shown that from 2002, there has been active groundwater inflow from the lakes towards the capture zone. This means that it is necessary to adopt appropriate measures to reverse the inflow towards the lakes.
    Beschreibung: Article impact statement: The probability of cluster membership quantified using an algorithm should be validated against another probabilistic‐based classifier.
    Beschreibung: Federal Ministry of Education and Research http://dx.doi.org/10.13039/501100002347
    Schlagwort(e): ddc:551.9 ; ddc:551.49
    Sprache: Englisch
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  • 12
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    Application of mixed‐effects modelling and rule‐based models to explain copper variation in soil profiles of southern Germany (2022)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2022-10-01
    Beschreibung: Copper (Cu) is an essential element for plants and microorganisms and at larger concentrations a toxic pollutant. A number of factors controlling Cu dynamics have been reported, but information on quantitative relationships is scarce. We aimed to (i) quantitatively describe and predict soil Cu concentrations (CuAR) in aqua regia considering site‐specific effects and effects of pH, soil organic carbon (SOC) and cation exchange capacity (CEC), and (ii) study the suitability of mixed‐effects modelling and rule‐based models for the analysis of long‐term soil monitoring data. Thirteen uncontaminated long‐term monitoring soil profiles in southern Germany were analysed. Since there was no measurable trend of increasing CuAR concentrations with time in the respective depth ranges of the sites, data from different sampling dates were combined and horizon‐specific regression analyses including model simplifications were carried out for 10 horizons. Fixed‐ and mixed‐effects models with the site as a random effect were useful for the different horizons and significant contributions (either of main effects or interactions) of SOC, CEC and pH were present for 9, 8 and 7 horizons, respectively. Horizon‐specific rule‐based cubist models described the CuAR data similarly well. Validations of cubist models and mixed‐effects models for the CuAR concentrations in A horizons were successful for the given population after random splitting into calibration and validation samples, but not after independent validations with random splitting according to sites. Overall, site, CEC, SOC and pH provide important information for a description of CuAR concentrations using the different regression approaches. Highlights: Information on quantitative relationships for factors controlling Cu dynamics is scarce. Site, CEC, SOC and pH provide important information for a description of Cu concentrations. Validations of cubist models and mixed‐effects models for A horizons were successful for a closed population of sites.
    Beschreibung: Bavarian State Ministry of the Environment and Consumer Protection http://dx.doi.org/10.13039/501100010219
    Beschreibung: Ministry of Agriculture and Environment Mecklenburg‐Western Pomerania
    Schlagwort(e): ddc:631.4
    Sprache: Englisch
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  • 13
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    Millimetre scale aeration of the rhizosphere and drilosphere (2022)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2022-10-04
    Beschreibung: Soil aeration is a critical factor for oxygen‐limited subsoil processes, as transport by diffusion and advection is restricted by the long distance to the free atmosphere. Oxygen transport into the soil matrix is highly dependent on its connectivity to larger pore channels like earthworm and root colonised biopores. Here we hypothesize that the soil matrix around biopores represents different connectivity depending on biopore genesis and actual coloniser. We analysed the soil pore system of undisturbed soil core samples around biopores generated or colonised by roots and earthworms and compared them with the pore system of soil, not in the immediacy of a biopore. Oxygen partial pressure profiles and gas relative diffusion was measured in the rhizosphere and drilosphere from the biopore wall into the bulk soil with microelectrodes. The measurements were linked with structural features such as porosity and connectivity obtained from X‐ray tomography and image analysis. Aeration was enhanced in the soil matrix surrounding biopores in comparison to the bulk soil, shown by higher oxygen concentrations and higher relative diffusion coefficients. Biopores colonised by roots presented more connected lateral pores than earthworm colonised ones, which resulted in enhanced aeration of the rhizosphere compared to the drilosphere. This has influenced biotic processes (microbial turnover/mineralization or root respiration) at biopore interfaces and highlights the importance of microstructural features for soil processes and their dependency on the biopore's coloniser.
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Schlagwort(e): ddc:631.4
    Sprache: Englisch
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  • 14
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    Response of subsoil organic matter contents and physical properties to long‐term, high‐rate farmyard manure application (2022)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2022-07-26
    Beschreibung: Application of farmyard manure (FYM) is common practice to improve physical and chemical properties of arable soil and crop yields. However, studies on effects of FYM application mainly focussed on topsoils, whereas subsoils have rarely been addressed so far. We, therefore, investigated the effects of 36‐year FYM application with different rates of annual organic carbon (OC) addition (0, 469, 938 and 1875 g C m−2 a−1) on OC contents of a Chernozem in 0–30 cm (topsoil) and 35–45 cm (subsoil) depth. We also investigated its effects on soil structure and hydraulic properties in subsoil. X‐ray computed tomography was used to analyse the response of the subsoil macropore system (≥19 μm) and the distribution of particulate organic matter (POM) to different FYM applications, which were related to contents in total OC (TOC) and water‐extractable OC (WEOC). We show that FYM‐C application of 469 g C m−2 a−1 caused increases in TOC and WEOC contents only in the topsoil, whereas rates of ≥938 g C m−2 a−1 were necessary for TOC enrichment also in the subsoil. At this depth, the subdivision of TOC into different OC sources shows that most of the increase was due to fresh POM, likely by the stimulation of root growth and bioturbation. The increase in subsoil TOC went along with increases in macroporosity and macropore connectivity. We neither observed increases in plant‐available water capacity nor in unsaturated hydraulic conductivity. In conclusion, only very high application of FYM over long periods can increase OC content of subsoil at our study site, but this increase is largely based on fresh, easily degradable POM and likely accompanied by high C losses when considering the discrepancy between OC addition rate by FYM and TOC response in soil. Highlights A new image processing procedure to distinguish fresh and decomposed POM. The increase of subsoil C stock based to a large extend on fresh, labile POM. Potential of arable subsoils for long‐term C storage by large FYM application rates is limited. The increase in TOC has no effect on hydraulic properties of the subsoil.
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Schlagwort(e): ddc:631.4
    Sprache: Englisch
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  • 15
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    Non‐exchangeable stable hydrogen isotope ratios in clay minerals and soil clay fractions: A method test (2022)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2023-01-20
    Beschreibung: Stable hydrogen isotope ratios (δ2H values) in structural hydroxyl groups of pedogenic clay minerals are inherited from the surrounding water at the time of their formation. Only non‐exchangeable H preserves the environmental forensic and paleoclimate information (δ2Hn value). To measure δ2Hn values in structural H of clay minerals and soil clay fractions, we adapted a steam equilibration method by accounting for high hygroscopicity. Our δ2Hn values for USGS57 biotite (−95.3 ± SD 0.9‰) and USGS58 muscovite (30.7 ± 1.4‰) differed slightly but significantly from the reported δ2H values (−91.5 ± 2.4‰ and −28.4 ± 1.6‰), because the minerals contained 1.1%–4.4% of exchangeable H. The low SD of replicate measurements (n = 3) confirmed a high precision. The clay separation method including destruction of Fe oxides, carbonates and soil organic matter, and dispersion did not significantly change the δ2Hn values of five different clay minerals. However, we were unable to remove all organic matter from the soil clay fractions resulting in an estimated bias of 1‰ in two samples and 15‰ in the carbon‐richest sample. Our results demonstrate that δ2Hn values of structural H of clay minerals and soil clay fractions can be reliably measured without interference from atmospheric water and the method used to separate the soil clay fraction. Highlights We tested steam equilibration to determine stable isotope ratios of structural H in clay. Gas‐tight capsule sealing in Ar atmosphere was necessary to avoid remoistening. Our steam equilibration method showed a high accuracy and precision. The clay separation method did not change stable isotope ratios of structural H in clay.
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Schlagwort(e): ddc:549 ; controlled isotope exchange technique ; deuterium ; montmorillonite ; soil clay separation ; soil organic matter removal ; steam equilibration ; structural H ; USGS57 biotite ; vermiculite ; δ2H
    Sprache: Englisch
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  • 16
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    Potential erodibility of semi‐arid steppe soils derived from aggregate stability tests (2022)
    Koza, Moritz ; Pöhlitz, Julia ; Prays, Aleksey ; [weitere]
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2023-01-26
    Beschreibung: Erosion is a severe threat to the sustainable use of agricultural soils. However, the structural resistance of soil against the disruptive forces steppe soils experience under field conditions has not been investigated. Therefore, 132 topsoils under grass‐ and cropland covering a large range of physico‐chemical soil properties (sand: 2–76%, silt: 18–80%, clay: 6–30%, organic carbon: 7.3–64.2 g kg−1, inorganic carbon: 0.0–8.5 g kg−1, pH: 4.8–9.5, electrical conductivity: 32–946 μS cm−1) from northern Kazakhstan were assessed for their potential erodibility using several tests. An adjusted drop‐shatter method (low energy input of 60 Joule on a 250‐cm3 soil block) was used to estimate the stability of dry soil against weak mechanical forces, such as saltating particles striking the surface causing wind erosion. Three wetting treatments with various conditions and energies (fast wetting, slow wetting, and wet shaking) were applied to simulate different disruptive effects of water. Results indicate that aggregate stability was higher for grassland than cropland soils and declined with decreasing soil organic carbon content. The results of the drop‐shatter test suggested that 29% of the soils under cropland were at risk of wind erosion, but only 6% were at high risk (i.e. erodible fraction 〉60%). In contrast, the fast wetting treatment revealed that 54% of the samples were prone to become “very unstable” and 44% “unstable” during heavy rain or snowmelt events. Even under conditions comparable to light rain events or raindrop impact, 53–59% of the samples were “unstable.” Overall, cropland soils under semi‐arid conditions seem much more susceptible to water than wind erosion. Considering future projections of increasing precipitation in Kazakhstan, we conclude that the risk of water erosion is potentially underestimated and needs to be taken into account when developing sustainable land use strategies. Highlights Organic matter is the important binding agent enhancing aggregation in steppe topsoils. Tillage always declines aggregate stability even without soil organic carbon changes. All croplands soil are prone to wind or water erosion independent of their soil properties. Despite the semi‐arid conditions, erosion risk by water seems higher than by wind.
    Beschreibung: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Schlagwort(e): ddc:631.4 ; climate change ; land use ; soil organic carbon ; soil texture ; water erosion ; wind erosion
    Sprache: Englisch
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  • 17
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    Vertical SOC distribution and aromatic carbon in centuries old charcoal‐rich Technosols (2022)
    Bonhage, Alexander ; Raab, Thomas ; Schneider, Anna ; [weitere]
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2023-01-21
    Beschreibung: Charcoal‐rich Technosols on century‐old relict charcoal hearths (RCHs) are the subject of ongoing research regarding potential legacy effects that result from historic charcoal production and subsequent charcoal amendments on forest soil properties and forest ecosystems today. RCHs consist mostly of Auh horizons that are substantially enriched in soil organic carbon (SOC), of which the largest part seems to be of pyrogenic origin (PyC). However, the reported range of SOC and PyC contents in RCH soil also suggests that they are enriched in nonpyrogenic SOC. RCH soils are discussed as potential benchmarks for the long‐term influence of biochar amendment and the post‐wildfire influences on soil properties. In this study, we utilised a large soil sample dataset (n = 1245) from 52 RCH sites in north‐western Connecticut, USA, to quantify SOC contents by total element analysis. The contents of condensed highly aromatic carbon as a proxy for black carbon (BC) were predicted by using a modified benzene polycarboxylated acid (BPCA) marker method in combination with diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy‐based partial least square regression (r2 = 0.89). A high vertical spatial sampling resolution allowed the identification of soil organic matter (SOM) enrichment and translocation processes. The results show an average 75% and 1862% increase in TOC and BPCA‐derived carbon, respectively, for technogenic Auh horizons compared to reference soils. In addition to an increase in aromatic properties, increased carboxylic properties of the RCH SOC suggest self‐humification effects of degrading charcoal and thereby the continuing formation of leachable aromatic carbon compounds, which could have effects on pedogenic processes in buried soils. Indeed, we show BPCA‐derived carbon concentrations in intermediate technogenic Cu horizons and buried top/subsoils that suggest vertical translocation of highly aromatic carbon originating in RCH Auh horizons. Topmost Auh horizons showed a gradual decrease in total organic carbon (TOC) contents with increasing depth, suggesting accumulation of recent, non‐pyrogenic SOM. Lower aliphatic absorptions in RCH soil spectra suggest different SOM turnover dynamics compared to reference soils. Furthermore, studied RCH soils featured additional TOC enrichment, which cannot be fully explained now. Highlights BC to TOC ratio and high resolution vertical SOC distribution in 52 RCH sites were studied. RCH soils non‐BC pool was potentially different to reference soils. RCH soils feature TOC accumulation in the topmost horizon. There is BC translocation into buried soils on RCH sites.
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Schlagwort(e): ddc:631.4 ; benzene polycarboxylated acid marker (BPCA) ; black carbon ; charcoal degradation ; charcoal kiln ; pyrogenic carbon ; relict charcoal hearth ; biochar
    Sprache: Englisch
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    Defining Hydrogeological Site Similarity with Hierarchical Agglomerative Clustering (2022)
    Blackwell Publishing Ltd | Malden, US
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    Publikationsdatum: 2024-02-28
    Beschreibung: 〈title xmlns:mml="http://www.w3.org/1998/Math/MathML"〉Abstract〈/title〉〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉Hydrogeological information about an aquifer is difficult and costly to obtain, yet essential for the efficient management of groundwater resources. Transferring information from sampled sites to a specific site of interest can provide information when site‐specific data is lacking. Central to this approach is the notion of site similarity, which is necessary for determining relevant sites to include in the data transfer process. In this paper, we present a data‐driven method for defining site similarity. We apply this method to selecting groups of similar sites from which to derive prior distributions for the Bayesian estimation of hydraulic conductivity measurements at sites of interest. We conclude that there is now a unique opportunity to combine hydrogeological expertise with data‐driven methods to improve the predictive ability of stochastic hydrogeological models.〈/p〉
    Beschreibung: 〈p xmlns:mml="http://www.w3.org/1998/Math/MathML" xml:lang="en"〉〈italic〉Article impact statement〈/italic〉: This article introduces hierarchical clustering as a method for defining a notion of site similarity; the aim of this method is to improve the derivation of prior distributions in Bayesian methods in hydrogeology.〈/p〉
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Beschreibung: https://github.com/GeoStat-Bayesian/geostatDB
    Beschreibung: https://github.com/GeoStat-Bayesian/exPrior
    Beschreibung: https://github.com/GeoStat-Bayesian/siteSimilarity
    Schlagwort(e): ddc:551.49 ; hydrogeological sites ; hydrogeological modeling
    Sprache: Englisch
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  • 19
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    Reducing tillage intensity benefits the soil micro‐ and mesofauna in a global meta‐analysis (2022)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2024-03-22
    Beschreibung: Soil fauna drives crucial processes of energy and nutrient cycling in agricultural systems, and influences the quality of crops and pest incidence. Soil tillage is the most influential agricultural manipulation of soil structure, and has a profound influence on soil biology and its provision of ecosystem services. The objective of this study was to quantify through meta‐analyses the effects of reducing tillage intensity on density and diversity of soil micro‐ and mesofaunal communities, and how these effects vary among different pedoclimatic conditions and interact with concurrent management practices. We present the results of a global meta‐analysis of available literature data on the effects of different tillage intensities on taxonomic and functional groups of soil micro‐ and mesofauna. We collected paired observations (conventional vs. reduced forms of tillage/no‐tillage) from 133 studies across 33 countries. Our results show that reduced tillage intensity or no‐tillage increases the total density of springtails (+35%), mites (+23%), and enchytraeids (+37%) compared to more intense tillage methods. The meta‐analyses for different nematode feeding groups, life‐forms of springtails, and taxonomic mite groups showed higher densities under reduced forms of tillage compared to conventional tillage on omnivorous nematodes (+53%), epedaphic (+81%) and hemiedaphic (+84%) springtails, oribatid (+43%) and mesostigmatid (+57%) mites. Furthermore, the effects of reduced forms of tillage on soil micro‐ and mesofauna varied with depth, climate and soil texture, as well as with tillage method, tillage frequency, concurrent fertilisation, and herbicide application. Our findings suggest that reducing tillage intensity can have positive effects on the density of micro‐ and mesofaunal communities in areas subjected to long‐term intensive cultivation practices. Our results will be useful to support decision making on the management of soil faunal communities and will facilitate modelling efforts of soil biology in global agroecosystems. HIGHLIGHTS Global meta‐analysis to estimate the effect of reducing tillage intensity on micro‐ and mesofauna Reduced tillage or no‐tillage has positive effects on springtail, mite and enchytraeid density Effects vary among nematode feeding groups, springtail life forms and mite suborders Effects vary with texture, climate and depth and depend on the tillage method and frequency
    Beschreibung: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Beschreibung: https://doi.org/10.20387/bonares-eh0f-hj28
    Schlagwort(e): ddc:631.4 ; agricultural land use ; conservation agriculture ; conventional agriculture ; soil biodiversity ; soil cultivation
    Sprache: Englisch
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    Anisotropic velocity models for (3D) seismic imaging ofthe Lower Seve Nappe in Jämtland, Sweden (2022)
    Oxford Univ. Press
    Details
    Publikationsdatum: 2024-02-07
    Beschreibung: Strong anisotropy of seismic velocity in the Earth’scrust poses serious challenges for seismic imaging. Where in situ seismic properties are not available the anisotropy can be determined from velocity analysis of surface and borehole seismic profiles. This is well established for dense, long-offset reflection seismic data. However, it is unknown how applicable this approach is for sparse seismic reflection data with low fold and short offsets in anisotropic metamorphic rocks. Here we show that anisotropy parameters can be determined from a sparse 3D data set at the COSC-1 borehole site in the Swedish Caledonides and that the results agree well with the seismic anisotropy parameters determined from seismic laboratory measurements on core samples. Applying these anisotropy parameters during 3D seismic imaging improves the seismic image of the high amplitude reflections especially in the vicinity of the lower part of the borehole. Strong reflections in the resulting seismic data show good correlation with the borehole-derived lithology. Our results aid the interpretation and extrapolation of the seismic stratigraphy of the Lower Seve Nappe in Jämtland and other parts in the Caledonides.
    Materialart: Article , PeerReviewed , info:eu-repo/semantics/article
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    Active ocean–continent transform margins: seismic investigation of the Cayman Trough-Swan Island ridge-transform intersection (2022)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: The southern boundary of the Cayman Trough in the Caribbean is marked by the Swan Islands transform fault (SITF), which also represents the ocean-continent transition of the Honduras continental margin. This is one of the few places globally where a transform continental margin is currently active. The CAYSEIS experiment acquired an ∼165-km-long seismic refraction and gravity profile (P01) running across this transform margin, and along the ridge-axis of the Mid-Cayman Spreading Centre (MCSC) to the north. This profile reveals not only the crustal structure of an actively evolving transform continental margin, that juxtaposes Mesozoic-age continental crust to the south against zero-age ultraslow spread oceanic crust to the north, but also the nature of the crust and uppermost mantle beneath the ridge-transform intersection (RTI). The traveltimes of arrivals recorded by ocean-bottom seismographs (OBSs) deployed along-profile have been inverse and forward modelled, in combination with gravity modelling, to reveal an ∼25-km-thick continental crust that has been continuously thinned over a distance of ∼65 km to ∼10 km adjacent to the SITF, where it is juxtaposed against ∼3-4-km-thick oceanic crust. This thinning is primarily accommodated within the lower crust. Since Moho reflections are only sparsely observed, and, even then, only by a few OBSs located on the continental margin, the 7.5 km s-1 velocity contour is used as a proxy to locate the crust-mantle boundary along-profile. Along the MCSC, the crust-mantle boundary appears to be a transition zone, at least at the seismic wavelengths used for CAYSEIS data acquisition. Although the traveltime inversion only directly constrains the upper crust at the SITF, gravity modelling suggests that it is underlain by a higher density (〉3000 kg m-3) region spanning the width (∼15 km) of its bathymetric expression, that may reflect a broad region of metasomatism, mantle hydration or melt-depleted lithospheric mantle. At the MCSC ridge-axis to the north, the oceanic crust appears to be forming in zones, where each zone is defined by the volume of its magma supply. The ridge tip adjacent to the SITF is currently in a magma rich phase of accretion. However, there is no evidence for melt leakage into the transform zone. The width and crustal structure of the SITF suggests its motion is currently predominantly orthogonal to spreading. Comparison to CAYSEIS Profile P04, located to the west and running across-margin and through 10 Ma MCSC oceanic crust, suggests that, at about this time, motion along the SITF had a left-lateral transtensional component, that accounts for its apparently broad seabed appearance westwards.
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    Evaluating learning spaces in flood risk management in Germany: Lessons for governance research (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2021-06-28
    Beschreibung: Efforts to collaboratively manage the risk of flooding are ultimately based on individuals learning about risks, the decision process, and the effectiveness of decisions made in prior situations. This article argues that much can be learned about a governance setting by explicitly evaluating the relationships through which influential individuals and their immediate contacts receive and send information to one another. We define these individuals as “brokers,” and the networks that emerge from their interactions as “learning spaces.” The aim of this article is to develop strategies to identify and evaluate the properties of a broker's learning space that are indicative of a collaborative flood risk management arrangement. The first part of this article introduces a set of indicators, and presents strategies to employ this list so as to systematically identify brokers, and compare their learning spaces. The second part outlines the lessons from an evaluation that explored cases in two distinct flood risk management settings in Germany. The results show differences in the observed brokers' learning spaces. The contacts and interactions of the broker in Baden‐Württemberg imply a collaborative setting. In contrast, learning space of the broker in North Rhine‐Westphalia lacks the same level of diversity and polycentricity.
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Beschreibung: MWK Baden‐Württemberg
    Schlagwort(e): 333.91 ; brokerage ; collaborative water governance ; comanagement ; comparative analysis ; social networks
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    Synthetic resampling strategies and machine learning for digital soil mapping in Iran (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2021-07-04
    Beschreibung: Most common machine learning (ML) algorithms usually work well on balanced training sets, that is, datasets in which all classes are approximately represented equally. Otherwise, the accuracy estimates may be unreliable and classes with only a few values are often misclassified or neglected. This is known as a class imbalance problem in machine learning and datasets that do not meet this criterion are referred to as imbalanced data. Most datasets of soil classes are, therefore, imbalanced data. One of our main objectives is to compare eight resampling strategies that have been developed to counteract the imbalanced data problem. We compared the performance of five of the most common ML algorithms with the resampling approaches. The highest increase in prediction accuracy was achieved with SMOTE (the synthetic minority oversampling technique). In comparison to the baseline prediction on the original dataset, we achieved an increase of about 10, 20 and 10% in the overall accuracy, kappa index and F‐score, respectively. Regarding the ML approaches, random forest (RF) showed the best performance with an overall accuracy, kappa index and F‐score of 66, 60 and 57%, respectively. Moreover, the combination of RF and SMOTE improved the accuracy of the individual soil classes, compared to RF trained on the original dataset and allowed better prediction of soil classes with a low number of samples in the corresponding soil profile database, in our case for Chernozems. Our results show that balancing existing soil legacy data using synthetic sampling strategies can significantly improve the prediction accuracy in digital soil mapping (DSM). Highlights Spatial distribution of soil classes in Iran can be predicted using machine learning (ML) algorithms. The synthetic minority oversampling technique overcomes the drawback of imbalanced and highly biased soil legacy data. When combining a random forest model with synthetic sampling strategies the prediction accuracy of the soil model improves significantly. The resulting new soil map of Iran has a much higher spatial resolution compared to existing maps and displays new soil classes that have not yet been mapped in Iran.
    Beschreibung: Alexander von Humboldt‐Stiftung http://dx.doi.org/10.13039/100005156
    Beschreibung: German Research Foundation http://dx.doi.org/10.13039/501100001659
    Beschreibung: Soil and Water Research Institute, Agricultural Research, Education and Extension Organization, Karaj, Iran
    Schlagwort(e): 631.4 ; covariates ; imbalanced data ; machine learning ; random forest ; soil legacy data
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    Impact of biochar on nutrient supply, crop yield and microbial respiration on sandy soils of northern Germany (2021)
    Blackwell Publishing Ltd | Oxford, UK
    Details
    Publikationsdatum: 2021-06-16
    Beschreibung: The application of biochar to agricultural soils to increase nutrient availability, crop production and carbon sequestration has gained increasing interest but data from field experiments on temperate, marginal soils are still under‐represented. In the current study, biochar, produced from organic residues (digestates) from a biogas plant, was applied with and without digestates at low (3.4 t ha−1) and intermediate (17.1 t ha−1) rates to two acidic and sandy soils in northern Germany that are used for corn (Zea mays L.) production. Soil nutrient availability, crop yields, microbial biomass and carbon dioxide (CO2) emissions from heterotrophic respiration were measured over two consecutive years. The effects of biochar application depended on the intrinsic properties of the two tested soils and the biochar application rates. Although the soils at the fallow site, with initially low nutrient concentrations, showed a significant increase in pH, soil nutrients and crop yield after low biochar application rates, a similar response was found at the cornfield site only after application of substantially larger amounts of biochar. The effect of a single dose of biochar at the beginning of the experiment diminished over time but was still detectable after 2 years. Whereas plant available nutrient concentrations increased after biochar application, the availability of potentially phytotoxic trace elements (Zn, Pb, Cd, Cr) decreased significantly, and although slight increases in microbial biomass carbon and heterotrophic CO2 fluxes were observed after biochar application, they were mostly not significant. The results indicate that the application of relatively small amounts of biochar could have positive effects on plant available nutrients and crop yields of marginal arable soils and may decrease the need for mineral fertilizers while simultaneously increasing the sequestration of soil organic carbon. Highlights A low rate of biochar increased plant available nutrients and crop yield on marginal soils. Biochar application reduced the availability of potentially harmful trace elements. Heterotrophic respiration showed no clear response to biochar application. Biochar application may reduce fertilizer need and increase carbon sequestration on marginal soils.
    Beschreibung: German Academic Exchange Service http://dx.doi.org/10.13039/501100001655
    Beschreibung: Institute Strategic Programme grants, “Soils to Nutrition”
    Schlagwort(e): 631.4 ; black carbon ; carbon sequestration ; corn ; digestate ; heterotrophic respiration ; marginal soils ; microbial biomass
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    Self‐stated recovery from flooding: Empirical results from a survey in Central Vietnam (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2021-06-27
    Beschreibung: Social inequalities lead to flood resilience inequalities across social groups, a topic that requires improved documentation and understanding. The objective of this paper is to attend to these differences by investigating self‐stated flood recovery across genders in Vietnam as a conceptual replication of earlier results from Germany. This study employs a regression‐based analysis of 1,010 respondents divided between a rural coastal and an urban community in Thua Thien‐Hue province. The results highlight an important set of recovery process‐related variables. The set of relevant variables is similar across genders in terms of inclusion and influence, and includes age, social capital, internal and external support after a flood, perceived severity of previous flood impacts, and the perception of stress‐resilience. However, women were affected more heavily by flooding in terms of longer recovery times, which should be accounted for in risk management. Overall, the studied variables perform similarly in Vietnam and Germany. This study, therefore, conceptually replicates previous results suggesting that women display slightly slower recovery levels as well as that psychological variables influence recovery rates more than adverse flood impacts. This provides an indication of the results' potentially robust nature due to the different socio‐environmental contexts in Germany and Vietnam.
    Schlagwort(e): 333.7 ; flood recovery ; resilience ; societal equity ; vulnerability
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  • 26
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    The potential of ryegrass as cover crop to reduce soil N2O emissions and increase the population size of denitrifying bacteria (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2021-07-05
    Beschreibung: Nitrogen (N) fertilization is the major contributor to nitrous oxide (N2O) emissions from agricultural soil, especially in post‐harvest seasons. This study was carried out to investigate whether ryegrass serving as cover crop affects soil N2O emissions and denitrifier community size. A microcosm experiment was conducted with soil planted with perennial ryegrass (Lolium perenne L.) and bare soil, each with four levels of N fertilizer (0, 5, 10 and 20 g N m−2; applied as calcium ammonium nitrate). The closed‐chamber approach was used to measure soil N2O fluxes. Real‐time PCR was used to estimate the biomass of bacteria and fungi and the abundance of genes involved in denitrification in soil. The results showed that the presence of ryegrass decreased the nitrate content in soil. Cumulative N2O emissions of soil with grass were lower than in bare soil at 5 and 10 g N m−2. Fertilization levels did not affect the abundance of soil bacteria and fungi. Soil with grass showed greater abundances of bacteria and fungi, as well as microorganisms carrying narG, napA, nirK, nirS and nosZ clade I genes. It is concluded that ryegrass serving as a cover crop holds the potential to mitigate soil N2O emissions in soils with moderate or high NO3− concentrations. This highlights the importance of cover crops for the reduction of N2O emissions from soil, particularly following N fertilization. Future research should explore the full potential of ryegrass to reduce soil N2O emissions under field conditions as well as in different soils. Highlights This study was to investigate whether ryegrass serving as cover crop affects soil N2O emissions and denitrifier community size; Plant reduced soil N substrates on one side, but their root exudates stimulated denitrification on the other side; N2O emissions were lower in soil with grass than bare soil at medium fertilizer levels, and growing grass stimulated the proliferation of almost all the denitrifying bacteria except nosZ clade II; Ryegrass serving as a cover crop holds the potential to mitigate soil N2O emissions.
    Beschreibung: China Scholarship Council http://dx.doi.org/10.13039/501100004543
    Beschreibung: The National Science Project for University of Anhui Province
    Schlagwort(e): 551.9 ; 631.4 ; denitrification ; perennial ryegrass (Lolium perenne L.) ; soil bacteria ; soil CO2 emissions ; soil N2O emissions
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  • 27
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    ogs5py: A Python‐API for the OpenGeoSys 5 Scientific Modeling Package (2021)
    Blackwell Publishing Ltd | Malden, US
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    Publikationsdatum: 2021-07-04
    Beschreibung: High‐performance numerical codes are an indispensable tool for hydrogeologists when modeling subsurface flow and transport systems. But as they are written in compiled languages, like C/C++ or Fortran, established software packages are rarely user‐friendly, limiting a wider adoption of such tools. OpenGeoSys (OGS), an open‐source, finite‐element solver for thermo‐hydro‐mechanical–chemical processes in porous and fractured media, is no exception. Graphical user interfaces may increase usability, but do so at a dramatic reduction of flexibility and are difficult or impossible to integrate into a larger workflow. Python offers an optimal trade‐off between these goals by providing a highly flexible, yet comparatively user‐friendly environment for software applications. Hence, we introduce ogs5py, a Python‐API for the OpenGeoSys 5 scientific modeling package. It provides a fully Python‐based representation of an OGS project, a large array of convenience functions for users to interact with OGS and connects OGS to the scientific and computational environment of Python.
    Beschreibung: German Federal Environmental Foundation http://dx.doi.org/10.13039/100007636
    Beschreibung: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Schlagwort(e): 551.49 ; hydrogeology ; subsurface flow ; modeling ; software
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  • 28
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    High‐Resolution Integrated Transport Model for Studying Surface Water–Groundwater Interaction (2021)
    Blackwell Publishing Ltd | Malden, US
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    Publikationsdatum: 2021-06-27
    Beschreibung: Transport processes that lead to exchange of mass between surface water and groundwater play a significant role for the ecological functioning of aquatic systems, for hydrological processes and for biogeochemical transformations. In this study, we present a novel integral modeling approach for flow and transport at the sediment–water interface. The model allows us to simultaneously simulate turbulent surface and subsurface flow and transport with the same conceptual approach. For this purpose, a conservative transport equation was implemented to an existing approach that uses an extended version of the Navier–Stokes equations. Based on previous flume studies which investigated the spreading of a dye tracer under neutral, losing and gaining flow conditions the new solver is validated. Tracer distributions of the experiments are in close agreement with the simulations. The simulated flow paths are significantly affected by in‐ and outflowing groundwater flow. The highest velocities within the sediment are found for losing condition, which leads to shorter residence times compared to neutral and gaining conditions. The largest extent of the hyporheic exchange flow is observed under neutral condition. The new solver can be used for further examinations of cases that are not suitable for the conventional coupled models, for example, if Reynolds numbers are larger than 10. Moreover, results gained with the integral solver provide high‐resolution information on pressure and velocity distributions at the rippled streambed, which can be used to improve flow predictions. This includes the extent of hyporheic exchange under varying ambient groundwater flow conditions.
    Beschreibung: Technische Universität Berlin, Germany
    Beschreibung: German Research Foundation http://dx.doi.org/10.13039/501100001659
    Schlagwort(e): 551.4 ; aquatic systems ; sediment-water interface ; transport model
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    Iron isotope fractionation in soil and graminaceous crops after 100 years of liming in the long‐term agricultural experimental site at Berlin‐Dahlem, Germany (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2021-07-05
    Beschreibung: Sustainable arable cropping relies on repeated liming. Yet, the associated increase in soil pH can reduce the availability of iron (Fe) to plants. We hypothesized that repeated liming, but not pedogenic processes such as lessivage (i.e., translocation of clay particles), alters the Fe cycle in Luvisol soil, thereby affecting Fe isotope composition in soils and crops. Hence, we analysed Fe concentrations and isotope compositions in soil profiles and winter rye from the long‐term agricultural experimental site in Berlin‐Dahlem, Germany, where a controlled liming trial with three field replicates per treatment has been conducted on Albic Luvisols since 1923. Heterogeneity in subsoil was observed at this site for Fe concentration but not for Fe isotope composition. Lessivage had not affected Fe isotope composition in the soil profiles. The results also showed that almost 100 years of liming lowered the concentration of the HCl‐extractable Fe that was potentially available for plant uptake in the surface soil (0–15 cm) from 1.03 (standard error (SE) 0.03) to 0.94 (SE 0.01) g kg−1. This HCl‐extractable Fe pool contained isotopically lighter Fe (δ56Fe = −0.05 to −0.29‰) than the bulk soil (δ56Fe = −0.08 to 0.08‰). However, its Fe isotope composition was not altered by the long‐term lime application. Liming resulted in relatively lower Fe concentrations in the roots of winter rye. In addition, liming led to a heavier Fe isotope composition of the whole plants compared with those grown in the non‐limed plots (δ56FeWholePlant_ + Lime = −0.12‰, SE 0.03 vs. δ56FeWholePlant_‐Lime = −0.21‰, SE 0.01). This suggests that the elevated soil pH (increased by one unit due to liming) promoted the Fe uptake strategy through complexation of Fe(III) from the rhizosphere, which favoured heavier Fe isotopes. Overall, the present study showed that liming and a related increase in pH did not affect the Fe isotope compositions of the soil, but may influence the Fe isotope composition of plants grown in the soil if they alter their Fe uptake strategy upon the change of Fe availability. Highlights Fe concentrations and stocks, but not Fe isotope compositions, were more heterogeneous in subsoil than in topsoil. Translocation of clay minerals did not result in Fe isotope fractionation in the soil profile of a Luvisol. Liming decreased Fe availability in topsoil, but did not affect its δ56Fe values. Uptake of heavier Fe isotopes by graminaceous crops was more pronounced at elevated pH.
    Beschreibung: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Schlagwort(e): 551.9 ; liming ; plant‐available Fe pool in soil ; winter rye ; δ56Fe
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    How to Find Aquifer Statistics Utilizing Pumping Tests? Two Field Studies Using welltestpy (2021)
    Blackwell Publishing Ltd | Malden, US
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    Publikationsdatum: 2022-04-01
    Beschreibung: We present a workflow to estimate geostatistical aquifer parameters from pumping test data using the Python package welltestpy. The procedure of pumping test analysis is exemplified for two data sets from the Horkheimer Insel site and from the Lauswiesen site, Germany. The analysis is based on a semi‐analytical drawdown solution from the upscaling approach Radial Coarse Graining, which enables to infer log‐transmissivity variance and horizontal correlation length, beside mean transmissivity, and storativity, from pumping test data. We estimate these parameters of aquifer heterogeneity from type‐curve analysis and determine their sensitivity. This procedure, implemented in welltestpy, is a template for analyzing any pumping test. It goes beyond the possibilities of standard methods, for example, based on Theis' equation, which are limited to mean transmissivity and storativity. A sensitivity study showed the impact of observation well positions on the parameter estimation quality. The insights of this study help to optimize future test setups for geostatistical aquifer analysis and provides guidance for investigating pumping tests with regard to aquifer statistics using the open‐source software package welltestpy.
    Beschreibung: Article impact statement: We present a workflow to infer parameters of subsurface heterogeneity from pumping test data exemplified at two sites using welltestpy.
    Beschreibung: German Federal Environmental Foundation (DBU) http://dx.doi.org/10.13039/100007636
    Schlagwort(e): ddc:551.49
    Sprache: Englisch
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    Importance of sources of variability, scales and experimental design: A case study about the effects of biochar and slurry application on soil properties in agricultural silty loam soils (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2022-04-01
    Beschreibung: In designed experiments, different sources of variability and an adequate scale of measurement need to be considered, but not all approaches in common usage are equally valid. In order to elucidate the importance of sources of variability and choice of scale, we conducted an experiment where the effects of biochar and slurry applications on soil properties related to soil fertility were studied for different designs: (a) for a field‐scale sampling design with either a model soil (without natural variability) as an internal control or with composited soils, (b) for a design with a focus on amendment variabilities, and (c) for three individual field‐scale designs with true field replication and a combined analysis representative of the population of loess‐derived soils. Three silty loam sites in Germany were sampled and the soil macroaggregates were crushed. For each design, six treatments (0, 0.15 and 0.30 g slurry‐N kg−1 with and without 30 g biochar kg−1) were applied before incubating the units under constant soil moisture conditions for 78 days. CO2 fluxes were monitored and soils were analysed for macroaggregate yields and associated organic carbon (C). Mixed‐effects models were used to describe the effects. For all soil properties, results for the loess sites differed with respect to significant contributions of fixed effects for at least one site, suggesting the need for a general inclusion of different sites. Analysis using a multilevel model allowed generalizations for loess soils to be made and showed that site:slurry:biochar and site:slurry interactions were not negligible for macroaggregate yields. The use of a model soil as an internal control enabled observation of variabilities other than those related to soils or amendments. Experiments incorporating natural variability in soils or amendments resulted in partially different outcomes, indicating the need to include all important sources of variability. Highlights Effects of biochar and slurry applications were studied for different designs and mixed‐effects models were used to describe the effects. Including an internal control allowed observation of, e.g., methodological and analytical variabilities. The results suggested the need for a general inclusion of different sites. Analysis using a multilevel model allowed generalizations for loess soils. The results indicated the need to include all important sources of variability.
    Schlagwort(e): ddc:631.4
    Sprache: Englisch
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    Do tree species affect decadal changes in soil organic carbon and total nitrogen stocks in Danish common garden experiments? (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2022-04-01
    Beschreibung: Temperate forest soils are often considered as an important sink for atmospheric carbon (C), thereby buffering anthropogenic CO2 emissions. However, the effect of tree species composition on the magnitude of this sink is unclear. We resampled a tree species common garden experiment (six sites) a decade after initial sampling to evaluate whether forest floor (FF) and topsoil organic carbon (Corg) and total nitrogen (Nt) stocks changed in dependence of tree species (Norway spruce—Picea abies L., European beech—Fagus sylvatica L., pedunculate oak—Quercus robur L., sycamore maple—Acer pseudoplatanus L., European ash—Fraxinus excelsior L. and small‐leaved lime—Tilia cordata L.). Two groups of species were identified in terms of Corg and Nt distribution: (1) Spruce with high Corg and Nt stocks in the FF developed as a mor humus layer which tended to have smaller Corg and Nt stocks and a wider Corg:Nt ratio in the mineral topsoil, and (2) the broadleaved species, of which ash and maple distinguished most clearly from spruce by very low Corg and Nt stocks in the FF developed as mull humus layer, had greater Corg and Nt stocks, and narrow Corg:Nt ratios in the mineral topsoil. Over 11 years, FF Corg and Nt stocks increased most under spruce, while small decreases in bulk mineral soil (esp. in 0–15 cm and 0–30 cm depth) Corg and Nt stocks dominated irrespective of species. Observed decadal changes were associated with site‐related and tree species‐mediated soil properties in a way that hinted towards short‐term accumulation and mineralisation dynamics of easily available organic substances. We found no indication for Corg stabilisation. However, results indicated increasing Nt stabilisation with increasing biomass of burrowing earthworms, which were highest under ash, lime and maple and lowest under spruce. Highlights We studied if tree species differences in topsoil Corg and Nt stocks substantiate after a decade. The study is unique in its repeated soil sampling in a multisite common garden experiment. Forest floors increased under spruce, but topsoil stocks decreased irrespective of species. Changes were of short‐term nature. Nitrogen was most stable under arbuscular mycorrhizal species.
    Beschreibung: Deutsche Forschungsgemeinschaff (DFG)
    Schlagwort(e): ddc:551.9 ; ddc:631.41
    Sprache: Englisch
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    The ‘Flood Resilience Rose’: A management tool to promote transformation towards flood resilience (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2021-09-29
    Beschreibung: Coping with the growing impacts of flooding in EU countries, a paradigm shift in flood management can be observed, moving from safety‐based towards risk‐based approaches and holistic perspectives. Flood resilience is a common denominator of most of the approaches. In this article, we present the ‘Flood Resilience Rose’ (FRR), a management tool to promote harmonised action towards flood resilience in European regions and beyond. The FRR is a result of a two‐step process. First, based on scientific concepts as well as analysis of relevant policy documents, we identified three ‘levels of operation’. The first level refers to the EU Floods Directive and an extended multi‐layer safety approach, comprising the four different layers of protection, prevention, preparedness and recovery, and related measures to be taken. This level is not independent but depends both on the institutional (second level) and the wider (third level) context. Second, we used surveys, semi‐structured interviews and group discussions during workshops with experts from Belgium, Denmark, Germany, the Netherlands and the United Kingdom to validate the definitions and the FRR's practical relevance. The presented FRR is thus the result of rigorous theoretical and practical consideration and provides a tool capable to strengthen flood risk management practice.
    Beschreibung: European Regional Development Fund http://dx.doi.org/10.13039/501100008530
    Schlagwort(e): 551.48 ; flood defence measures ; governance and institutions ; integrated flood risk management ; resilience
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    Urban pluvial flood adaptation: Results of a household survey across four German municipalities (2021)
    Blackwell Publishing Ltd | Oxford, UK
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    Publikationsdatum: 2022-09-30
    Beschreibung: In recent years, German cities were heavily impacted by pluvial flooding and related damage is projected to increase due to climate change and urbanisation. It is important to ask how to improve urban pluvial flood risk management. To understand the current state of property level adaptation, a survey was conducted in four municipalities that had recently been impacted by pluvial flooding. A hybrid framework based on the Protection Motivation Theory (PMT) and the Protection Action Decision Model (PADM) was used to investigate drivers of adaptive behaviour through both descriptive and regression analyses. Descriptive statistics revealed that participants tended to instal more low‐ and medium‐cost measures than high‐cost measures. Regression analyses showed that coping appraisal increased protection motivation, but that the adaptive behaviour also depends on framing factors, particularly homeownership. We further found that, while threat appraisal solely affects protection motivation and responsibility appraisal affects solely maladaptive thinking, coping appraisal affects both. Our results indicate that PMT is a solid starting point to study adaptive behaviours in the context of pluvial flooding, but we need to go beyond that by, for instance, considering factors of the PADM, such as responsibility, ownership, or respondent age, to fully understand this complex decision‐making process.
    Beschreibung: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Schlagwort(e): ddc:551.489 ; ddc:363.34
    Sprache: Englisch
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    Differences in Leaf Chemistry and Glandular Trichome Density between Wild Southwestern American Hop ( Humulus neomexicanus ) and Commercial Hop Cultivars (2021)
    American Chemical Society
    In:  Journal of Agricultural and Food Chemistry, 69 (27). pp. 7798-7814.
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    Publikationsdatum: 2022-01-07
    Beschreibung: The female flowers (“cones”) of the hop plant (Humulus L.) produce compounds that contribute to the flavor and other properties of beer. Hop leaves and cones produce many of the same compounds, which also confer agronomic traits such as insect and disease resistance. Targeted and untargeted ultraperformance liquid chromatography-quadrupole time-of-flight–mass spectrometry with Waters MSE technology (UPLC-QTof-MSE) metabolomics were used to compare leaf phytochemical compositions of greenhouse-grown southwestern American wild Humulus neomexicanus (A. Nelson and Cockerell) Rydb. against a group of commercial hop cultivars consisting of both pure European Humulus lupulus L. and European–North American hybrids. Principal component analysis showed a clear distinction in chemical profiles between the two groups. H. neomexicanus leaves had a significantly higher content of total α acids (p = 4.4 × 10–9), total bitter acids (p = 2.6 × 10–6), cohumulone (p = 1.0 × 10–13), humulone + adhumulone (p = 9.1 × 10–4), and the prenylflavonoids xanthohumol (p = 0.013) and desmethylxanthohumol (p = 0.029) as well as significantly higher densities of glandular trichomes (p = 1.3 × 10–6), the biosynthetic site of those compounds. Most flavonol glycosides measured were also significantly more abundant in H. neomexicanus (p = 1.5 × 10–22 to 0.0027), whereas phenolic acids were consistently, but generally nonsignificantly (p 〉 0.05), more abundant in the cultivars. The higher bitter acid, prenylflavonoid, and flavonol glycoside content of H. neomexicanus leaves may help to confer more favorable insect and disease-resistance properties.
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    Iron Acquisition Systems of Gram-negative Bacterial Pathogens Define TonB-Dependent Pathways to Novel Antibiotics (2021)
    American Chemical Society
    In:  Chemical Reviews, 121 (9). pp. 5193-5239.
    Details
    Publikationsdatum: 2022-01-07
    Beschreibung: Iron is an indispensable metabolic cofactor in both pro- and eukaryotes, which engenders a natural competition for the metal between bacterial pathogens and their human or animal hosts. Bacteria secrete siderophores that extract Fe3+ from tissues, fluids, cells, and proteins; the ligand gated porins of the Gram-negative bacterial outer membrane actively acquire the resulting ferric siderophores, as well as other iron-containing molecules like heme. Conversely, eukaryotic hosts combat bacterial iron scavenging by sequestering Fe3+ in binding proteins and ferritin. The variety of iron uptake systems in Gram-negative bacterial pathogens illustrates a range of chemical and biochemical mechanisms that facilitate microbial pathogenesis. This document attempts to summarize and understand these processes, to guide discovery of immunological or chemical interventions that may thwart infectious disease.
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    Synthase-Selective Exploration of a Tunicate Microbiome by Activity-Guided Single-Cell Genomics (2021)
    American Chemical Society
    In:  ACS Chemical Biology .
    Details
    Publikationsdatum: 2022-01-07
    Beschreibung: While thousands of environmental metagenomes have been mined for the presence of novel biosynthetic gene clusters, such computational predictions do not provide evidence of their in vivo biosynthetic functionality. Using fluorescent in situ enzyme assay targeting carrier proteins common to polyketide (PKS) and nonribosomal peptide synthetases (NRPS), we applied fluorescence-activated cell sorting to tunicate microbiome to enrich for microbes with active secondary metabolic capabilities. Single-cell genomics uncovered the genetic basis for a wide biosynthetic diversity in the enzyme-active cells and revealed a member of marine Oceanospirillales harboring a novel NRPS gene cluster with high similarity to phylogenetically distant marine and terrestrial bacteria. Interestingly, this synthase belongs to a larger class of siderophore biosynthetic gene clusters commonly associated with pestilence and disease. This demonstrates activity-guided single-cell genomics as a tool to guide novel biosynthetic discovery.
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    Phytoplankton nutritional quality is altered by shifting Si:N ratios and selective grazing (2021)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: Diatoms often dominate phytoplankton in temperate, polar and upwelling regions. Decreases in silicate availability or silicon to nitrogen (Si:N) ratios may induce silicon limitation in diatoms and lower their proportion within phytoplankton communities. The effects of such changes on the nutritional quality of phytoplankton are not well understood. To examine how changing Si:N ratios affect plankton nutritional value, we applied a range of Si:N ratios on a natural plankton community and manipulated grazing pressure to assess top-down effects of copepod selective grazing. Diatom proportion in phytoplankton increased with increasing Si:N ratios and so did phytoplankton nutritional quality in terms of major fatty acid concentrations, such as polyunsaturated fatty acids, docosahexaenoic (DHA) and eicosapentaenoic (EPA) acids. However, stoichiometric quality (carbon to nitrogen and carbon to phosphorus ratios), DHA:EPA and omega 3:6 (omega 3:omega 6) ratios declined with increasing Si:N ratios, suggesting that proportions between essential compounds in copepod diet may be more favorable in lowered Si:N ratios. Copepods had a negative effect on DHA contents, DHA:EPA and omega 3:omega 6 ratios, indicating possible selective grazing on more nutritious plankton. Our findings show that declining silicate concentrations can affect stoichiometric and biochemical quality of phytoplankton, which copepods can also moderate by selective grazing.
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    Water Balance and Desiccation Tolerance of the Invasive South American Tomato Pinworm (2021)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: Temperature and dehydration stress are two major co-occurring environmental stressors threatening the physiology, biochemistry, and ecology of insects. As such, understanding adaptive responses to desiccation stress is critical for predicting climate change impacts, particularly its influence on insect invasions. Here, we assessed water balance and desiccation resistance of the invasive Tuta absoluta (Meyrick, 1917) (Lepidoptera: Gelechiidae), and infer how eco-physiology shapes its niche. We measured basal body water and lipid content, water loss rates (WLRs), and desiccation resistance in larvae (second to fourth instars) and adults. Body -water, -lipid, and WLRs significantly varied across life stages. Second instars recorded the lowest while fourth instars exhibited the highest body water and lipid content. Adult body water and lipid content were higher than second and third instars and lower than fourth instars while proportion of body water and lipid contents were highest in adults and second larval instars respectively. Water loss rates were significantly highest in fourth-instar larvae compared to other life stages, but differences among stages were less apparent at longer exposure durations (48 h). Desiccation resistance assays showed that second instars had greatest mortality while fourth-instar larvae and adults were the most desiccation tolerant. Our results show that T. absoluta fourth-instar larvae and adults are the most resilient developmental stages and potentially contribute most to the invasion success of the pest in arid environments. Incorporation of these species-specific eco-physiological traits in predictive models can help refine invasive species potential spread under changing climates.
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    Five centuries of cod catches in Eastern Canada (2021)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: The fishery for Northern Atlantic cod (Gadus morhua) off Newfoundland and Labrador, Eastern Canada, presents the most spectacular case of an exploited stock crashed in a few decades by an industrial bottom trawl fishery under a seemingly sophisticated management regime after half a millennium of sustainable fishing. The fishery, which had generated annual catches of 100000 to 200000 tonnes from the beginning of the 16th century to the 1950s, peaked in 1968 at 810000 tonnes, followed by a devastating collapse and closure 24 years later. Since then, stock recovery may have been hindered by premature openings, with vessels targeting the remains of the cod population. Previous research paid little attention towards using multicentury time series to inform sustainable catches and recovery plans. Here, we show that a simple stock assessment model can be used to model the cod population trajectory for the entire period from 1508 to 2019 for which catch estimates are available. The model suggests that if fishing effort and mortality had been stabilized in the 1980s, precautionary annual yields of about 200000 tonnes could have been sustained. Our analysis demonstrates the value of incorporating prior knowledge to counteract shifting baseline effects on reference points and contemporary perceptions of historical stock status.
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    Establishment of Host–Algal Endosymbioses: Genetic Response to Symbiont Versus Prey in a Sponge Host (2021)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: The freshwater sponge Ephydatia muelleri and its Chlorella-like algal partner is an emerging model for studying animal: algal endosymbiosis. The sponge host is a tractable laboratory organism, and the symbiotic algae are easily cultured. We took advantage of these traits to interrogate questions about mechanisms that govern the establishment of durable intracellular partnerships between hosts and symbionts in facultative symbioses. We modified a classical experimental approach to discern the phagocytotic mechanisms that might be co-opted to permit persistent infections, and identified genes differentially expressed in sponges early in the establishment of endosymbiosis. We exposed algal-free E. muelleri to live native algal symbionts and potential food items (bacteria and native heat-killed algae), and performed RNA-Seq to compare patterns of gene expression among treatments. We found a relatively small but interesting suite of genes that are differentially expressed in the host exposed to live algal symbionts, and a larger number of genes triggered by host exposure to heat-killed algae. The upregulated genes in sponges exposed to live algal symbionts were mostly involved in endocytosis, ion transport, metabolic processes, vesicle-mediated transport, and oxidation–reduction. One of the host genes, an ATP-Binding Cassette transporter that is downregulated in response to live algal symbionts, was further evaluated for its possible role in the establishment of the symbiosis. We discuss the gene expression profiles associated with host responses to living algal cells in the context of conditions necessary for long-term residency within host cells by phototrophic symbionts as well as the genetic responses to sponge phagocytosis and immune-driven pathways.
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    Marine sponges maintain stable bacterial communities between reef sites with different coral to algae cover ratios (2021)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: Marine sponges play a major ecological role in recycling resources on coral reef ecosystems. The cycling of resources may largely depend on the stability of the host-microbiome interactions and their susceptibility to altered environmental conditions. Given the current coral to algal phase shift on coral reefs, we investigated whether the sponge-associated bacterial communities of four sponge species, with either high or low microbial abundances (HMA and LMA), remain stable at two reefs sites with different coral to algae cover ratios. Additionally, we assessed the bacterial community composition of two of these sponge species before and after a reciprocal transplantation experiment between the sites. An overall stable bacterial community composition was maintained across the two sites in all sponge species, with a high degree of host-specificity. Furthermore, the core bacterial communities of the sponges remained stable also after a 21-day transplantation period, although a minor shift was observed in less abundant taxa (〈 1%). Our findings support the conclusion that host identity and HMA-LMA status are stronger traits in shaping bacterial community composition than habitat. Nevertheless, long-term microbial monitoring of sponges along with benthic biomass and water quality assessments are needed for identifying ecosystem tolerance ranges and tipping points in ongoing coral reef phase shifts.
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    MSY needs no epitaph—but it was abused (2021)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: The maximum sustainable yield (MSY) concept is widely considered to be outdated and misleading. In response, fisheries scientists have developed models that often diverge radically from the first operational version of the concept. We show that the original MSY concept was deeply rooted in ecology and that going back to that version would be beneficial for fisheries, not least because the various substitutes have not served us well.
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    Use of food web knowledge in environmental conservation and management of living resources in the Baltic Sea (2021)
    Oxford Univ. Press
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    Publikationsdatum: 2024-02-07
    Beschreibung: Food webs are central entities mediating processes and external pressures in marine ecosystems. They are essential to understand and predict ecosystem dynamics and provision of ecosystem services. Paradoxically, utilization of food web knowledge in marine environmental conservation and resource management is limited. To better understand the use of knowledge and barriers to incorporation in management, we assess its application related to the management of eutrophication, chemical contamination, fish stocks, and non-indigenous species. We focus on the Baltic, a severely impacted, but also intensely studied and actively managed semi-enclosed sea. Our assessment shows food web processes playing a central role in all four areas, but application varies strongly, from formalized integration in management decisions, to support in selecting indicators and setting threshold values, to informal knowledge explaining ecosystem dynamics and management performance. Barriers for integration are complexity of involved ecological processes and that management frameworks are not designed to handle such information. We provide a categorization of the multi-faceted uses of food web knowledge and benefits of future incorporation in management, especially moving towards ecosystem-based approaches as guiding principle in present marine policies and directives. We close with perspectives on research needs to support this move considering global and regional change.
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    Genetic and Biochemical Reconstitution of Bromoform Biosynthesis in Asparagopsis Lends Insights into Seaweed Reactive Oxygen Species Enzymology (2020)
    American Chemical Society
    In:  ACS Chemical Biology, 15 (6). pp. 1662-1670.
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    Publikationsdatum: 2022-01-07
    Beschreibung: Marine macroalgae, seaweeds, are exceptionally prolific producers of halogenated natural products. Biosynthesis of halogenated molecules in seaweeds is inextricably linked to reactive oxygen species (ROS) signaling as hydrogen peroxide serves as a substrate for haloperoxidase enzymes that participate in the construction these halogenated molecules. Here, using red macroalga Asparagopsis taxiformis, a prolific producer of the ozone depleting molecule bromoform, we provide the discovery and biochemical characterization of a ROS-producing NAD(P)H oxidase from seaweeds. This discovery was enabled by our sequencing of Asparagopsis genomes, in which we find the gene encoding the ROS-producing enzyme to be clustered with genes encoding bromoform-producing haloperoxidases. Biochemical reconstitution of haloperoxidase activities establishes that fatty acid biosynthesis can provide viable hydrocarbon substrates for bromoform production. The ROS production haloperoxidase enzymology that we describe here advances seaweed biology and biochemistry by providing the molecular basis for decades worth of physiological observations in ROS and halogenated natural product biosyntheses.
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    Mass Spectrometry-Based Metabolomics Reveals a Concurrent Action of Several Chemical Mechanisms in Arabidopsis-Fusarium oxysporum Compatible and Incompatible Interactions (2020)
    American Chemical Society
    In:  Journal of Agricultural and Food Chemistry, 68 (51). pp. 15335-15344.
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    Publikationsdatum: 2022-01-07
    Beschreibung: Fusarium oxysporum is a destructive root-infecting plant pathogen that causes significant yield losses in many economically important crop species. Hence, a deeper understanding of pathogen infection strategies is needed. With liquid chromatography-tandem mass spectrometry and gas chromatography-time of flight mass spectrometry platforms, we analyzed the metabolic changes in a time-course experiment with Arabidopsis accessions either resistant (Col-0) or susceptible (Ler-0) to isolates of Fusarium oxysporum forma specialis matthioli infection. We showed a concurrent effect of Fusarium-derived polyols and the mycotoxin beauvericin in the suppression of the immune response of susceptible hosts. A significant increase in oxidized glutathione in the resistant host was probably associated with effective reactive oxygen species-mediated resistance responses. Through a combination of targeted and untargeted metabolomics, we demonstrated the concurrent action of several Arabidopsis defense systems as well as the concurrent action of several virulence systems in the fungal attack of susceptible Arabidopsis.
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    Decrease in diatom dominance at lower Si:N ratios alters plankton food webs (2020)
    Oxford Univ. Press
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    Publikationsdatum: 2023-02-08
    Beschreibung: Many coastal oceans experience not only increased loads of nutrients but also changes in the stoichiometry of nutrient supply. Excess supply of nitrogen and stable or decreased supply of silicon lower silicon to nitrogen (Si:N) ratios, which may decrease diatom proportion in phytoplankton. To examine how Si:N ratios affect plankton community composition and food web structure, we performed a mesocosm experiment where we manipulated Si:N ratios and copepod abundance in a Baltic Sea plankton community. In high Si:N treatments, diatoms dominated. Some of them were likely spared from grazing unexpectedly resulting in higher diatom biomass under high copepod grazing. With declining Si:N ratios, dinoflagellates became more abundant under low and picoplankton under high copepod grazing. This altered plankton food web structure: under high Si:N ratios, edible diatoms were directly accessible food for copepods, while under low Si:N ratios, microzooplankton and phago-mixotrophs (mixoplankton) were a more important food source for mesograzers. The response of copepods to changes in the phytoplankton community was complex and copepod density-dependent. We suggest that declining Si:N ratios favor microzoo- and mixoplankton leading to increased complexity of planktonic food webs. Consequences on higher trophic levels will, however, likely be moderated by edibility, nutritional value or toxicity of dominant phytoplankton species.
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    Taxon-specific prey response to the invasion of a pelagic invertebrate predator, revealed by comparison of pre- and post-invasion time series (2020)
    Oxford Univ. Press
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    Publikationsdatum: 2023-02-08
    Beschreibung: Quantification and attribution of the food web changes associated with the invasion of non-indigenous species in the marine realm often remain a challenge. One of the pelagic non-indigenous species of concern in the recent history of aquatic bioinvasions is the predatory cladoceran Cercopagis pengoi, which invaded the Baltic Sea in the early 1990s. While several studies have reported immediate declines in abundances of its potential prey, the long-term effects of C. pengoi on the food webs remain to be examined. Based on the long-term time series (1968–2018) in the Gulf of Riga (Baltic Sea), we found significant declines in abundance of the cladoceran Pleopis spp. and copepod Eurytemora affinis by 90 and 80%, respectively, are associated with the invasion of C. pengoi as well as significant alterations in seasonal abundance patterns of Pleopis spp., E. affinis and cladoceran Bosmina spp. The invasion of the non-indigenous predator has led to the changed prey abundance–temperature relationships. Special caution was taken in data preprocessing, to minimize the likelihood that observed changes in the zooplankton prey could be associated with factors other than the invasion of C. pengoi, such as temperature and storminess.
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    Zooplankton growth and survival differentially respond to interactive warming and acidification effects (2020)
    Oxford Univ. Press
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    Publikationsdatum: 2023-02-08
    Beschreibung: The copepod Acartia tonsa is a key component of a wide range of marine ecosystems, linking energy transfer from phytoplankton to higher trophic levels, and has a central role in productivity and biogeochemistry. The interaction of end-of-century global warming and ocean acidification scenarios with testing moderate temperature effects on a seminatural copepod community is needed to understand future community functioning. Here, we deployed a mesocosm experimental set-up with a full factorial design using two temperatures (13°C and 19°C) crossed with a pCO2 gradient ranging from ambient (550 μatm) to 3000 μatm. We used the natural bacteria, phyto- and microzooplankton species composition and biomass of the Kiel Bight and tested the response of A. tonsa development, carbon growth, mortality, size and condition. The tested traits were differently affected by the interaction of temperature and acidification. Ocean acidification increased development, carbon growth, size and mortality under the warming scenario of 19°C. At 13°C mortality rates decreased, while carbon growth, size and condition increased with acidification. We conclude from our experimental approach that a single species shows a variety of responses depending on the focal functional trait. Trait-specific mesozooplankton responses need to be further investigated and compared between geographical regions, seasons and taxonomic groups.
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    Single-Cell Transcriptomics of Abedinium Reveals a New Early-Branching Dinoflagellate Lineage (2020)
    Oxford Univ. Press
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    Publikationsdatum: 2023-02-08
    Beschreibung: Dinoflagellates possess many cellular characteristics with unresolved evolutionary histories. These include nuclei with greatly expanded genomes and chromatin packaged using histone-like proteins and dinoflagellate-viral nucleoproteins instead of histones, highly reduced mitochondrial genomes with extensive RNA editing, a mix of photosynthetic and cryptic secondary plastids, and tertiary plastids. Resolving the evolutionary origin of these traits requires understanding their ancestral states and early intermediates. Several early-branching dinoflagellate lineages are good candidates for such reconstruction, however these cells tend to be delicate and environmentally sparse, complicating such analyses. Here, we employ transcriptome sequencing from manually isolated and microscopically documented cells to resolve the placement of two cells of one such genus, Abedinium, collected by remotely operated vehicle in deep waters off the coast of Monterey Bay, CA. One cell corresponds to the only described species, Abedinium dasypus, whereas the second cell is distinct and formally described as Abedinium folium, sp. nov. Abedinium has classically been assigned to the early-branching dinoflagellate subgroup Noctilucales, which is weakly supported by phylogenetic analyses of small subunit ribosomal RNA, the single characterized gene from any member of the order. However, an analysis based on 221 proteins from the transcriptome places Abedinium as a distinct lineage, separate from and basal to Noctilucales and the rest of the core dinoflagellates. The transcriptome also contains evidence of a cryptic plastid functioning in the biosynthesis of isoprenoids, iron–sulfur clusters, and heme, a mitochondrial genome with all three expected protein-coding genes (cob, cox1, and cox3), and the presence of some but not all dinoflagellate-specific chromatin packaging proteins.
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    Estimating stock status from relative abundance and resilience (2020)
    Oxford Univ. Press
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    Publikationsdatum: 2023-02-08
    Beschreibung: The Law of the Sea as well as regional and national laws and agreements require exploited populations or stocks to be managed so that they can produce maximum sustainable yields. However, exploitation level and stock status are unknown for most stocks because the data required for full stock assessments are missing. This study presents a new method (AMSY) that estimates relative population size when no catch data are available using time-series of catch-per-unit-effort or other relative abundance indices as the main input. AMSY predictions for relative stock size were not significantly different from the “true” values when compared with simulated data. Also, they were not significantly different from relative stock size estimated by data-rich models in 88% of the comparisons within 140 real stocks. Application of AMSY to 38 data-poor stocks showed the suitability of the method and led to the first assessments for 23 species. Given the lack of catch data as input, AMSY estimates of exploitation come with wide margins of uncertainty which may not be suitable for management. However, AMSY seems to be well suited for estimating productivity as well as relative stock size and may, therefore, aid in the management of data-poor stocks.
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    Tabernabovines A–C: Three Monoterpenoid Indole Alkaloids from the Leaves of Tabernaemontana bovina (2019)
    American Chemical Society
    In:  Organic Letters, 21 (15). pp. 5938-5942.
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    Publikationsdatum: 2020-06-15
    Beschreibung: Three monoterpenoid indole alkaloids (MIAs), tabernabovines A–C (1–3), were isolated from Tabernaemontana bovina. They were elucidated by spectroscopic data and computational calculations. Unlike precursors of MIAs, strictosidine and alstrostine A, alkaloid 1 consists of tryptamine and secologanin in a 2:1 ratio. Alkaloid 2 is a cage compound, and 3 possesses a bridged ring. Tabernabovine A exhibited inhibitory activity against NO production with IC50 44.1 μM compared to l-NMMA with IC50 of 48.6 μM.
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    Euphorkanlide A, a Highly Modified Ingenane Diterpenoid with a C24 Appendage from Euphorbia kansuensis (2019)
    American Chemical Society
    In:  Organic Letters . pp. 1-4.
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    Publikationsdatum: 2020-01-02
    Beschreibung: Euphorkanlide A (1), a highly modified ingenane diterpenoid with a C24 appendage forming an additional hexahydroisobenzofuran-fused 19-membered macrocyclic bis-lactone ring system was isolated from the roots of Euphorbia kansuensis. Its structure was determined by extensive spectroscopic analysis and quantum-chemical calculations. Compound 1 showed significant cytotoxicities against a panel of cancer cell lines (IC50s 〈 5 μM). Mechanistic study revealed that 1 could induce the generation of ROS, leading to cell cycle arrest and cell apoptosis in drug-resistant cancer cell line HCT-15/5-FU.
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    Separation and Analysis of Microplastics and Nanoplastics in Complex Environmental Samples (2019)
    American Chemical Society
    In:  Accounts of Chemical Research, 52 (4). pp. 858-866.
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    Publikationsdatum: 2020-01-02
    Beschreibung: The vast amount of plastic waste emitted into the environment and the increasing concern of potential harm to wildlife has made microplastic and nanoplastic pollution a growing environmental concern. Plastic pollution has the potential to cause both physical and chemical harm to wildlife directly or via sorption, concentration, and transfer of other environmental contaminants to the wildlife that ingest plastic. Small particles of plastic pollution, termed microplastics (〉100 nm and 〈5 mm) or nanoplastics (〈100 nm), can form through fragmentation of larger pieces of plastic. These small particles are especially concerning because of their high specific surface area for sorption of contaminants as well as their potential to translocate in the bodies of organisms. These same small particles are challenging to separate and identify in environmental samples because their size makes handling and observation difficult. As a result, our understanding of the environmental prevalence of nanoplastics and microplastics is limited. Generally, the smaller the size of the plastic particle, the more difficult it is to separate from environmental samples. Currently employed passive density and size separation techniques to isolate plastics from environmental samples are not well suited to separate microplastics and nanoplastics. Passive flotation is hindered by the low buoyancy of small particles as well as the difficulty of handling small particles on the surface of flotation media. Here we suggest exploring alternative techniques borrowed from other fields of research to improve separation of the smallest plastic particles. These techniques include adapting active density separation (centrifugation) from cell biology and taking advantage of surface-interaction-based separations from analytical chemistry. Furthermore, plastic pollution is often challenging to quantify in complex matrices such as biological tissues and wastewater. Biological and wastewater samples are important matrices that represent key points in the fate and sources of plastic pollution, respectively. In both kinds of samples, protocols need to be optimized to increase throughput, reduce contamination potential, and avoid destruction of plastics during sample processing. To this end, we recommend adapting digestion protocols to match the expected composition of the nonplastic material as well as taking measures to reduce and account for contamination. Once separated, plastics in an environmental sample should ideally be characterized both visually and chemically. With existing techniques, microplastics and nanoplastics are difficult to characterize or even detect. Their low mass and small size provide limited signal for visual, vibrational spectroscopic, and mass spectrometric analyses. Each of these techniques involves trade-offs in throughput, spatial resolution, and sensitivity. To accurately identify and completely quantify microplastics and nanoplastics in environmental samples, multiple analytical techniques applied in tandem are likely to be required.
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    Magnetite- and Iodine-Containing Nanoemulsion as a Dual Modal Contrast Agent for X-ray/Magnetic Resonance Imaging (2019)
    American Chemical Society
    In:  ACS Applied Materials & Interfaces, 11 (1). pp. 403-416.
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    Publikationsdatum: 2020-12-03
    Beschreibung: Noninvasive diagnostic by imaging combined with a contrast agent (CA) is by now the most used technique to get insight into human bodies. X-ray and magnetic resonance imaging (MRI) are widely used technologies providing complementary results. Nowadays, it seems clear that bimodal CAs could be an emerging approach to increase the patient compliance, accessing different imaging modalities with a single CA injection. Owing to versatile designs, targeting properties, and high payload capacity, nanocarriers are considered as a viable solution to reach this goal. In this study, we investigated efficient superparamagnetic iron oxide nanoparticle (SPION)-loaded iodinated nano-emulsions (NEs) as dual modal injectable CAs for X-ray imaging and MRI. The strength of this new CA lies not only in its dual modal contrasting properties and biocompatibility, but also in the simplicity of the nanoparticulate assembling: iodinated oily core was synthesized by the triiodo-benzene group grafting on vitamin E (41.7% of iodine) via esterification, and SPIONs were produced by thermal decomposition during 2, 4, and 6 h to generate SPIONs with different morphologies and magnetic properties. SPIONs with most anisotropic shape and characterized by the highest r2/r1 ratio once encapsulated into iodinated NE were used for animal experimentation. The in vivo investigation showed an excellent contrast modification because of the presence of the selected NEs, for both imaging techniques explored, that is, MRI and X-ray imaging. This work provides the description and in vivo application of a simple and efficient nanoparticulate system capable of enhancing contrast for both preclinical imaging modalities, MRI, and computed tomography.
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    Functional Metabolome Analysis of Penicillium roqueforti by Means of Differential Off-Line LC–NMR (2019)
    American Chemical Society
    In:  Journal of Agricultural and Food Chemistry, 67 (18). pp. 5135-5146.
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    Publikationsdatum: 2021-01-08
    Beschreibung: UPLC–TOF/MS profiling, followed by the recently reported differential off-line LC–NMR (DOLC–NMR) and quantitative 1H NMR spectroscopy (qHNMR), led to the differential qualitative analysis and accurate quantitation of l-tryptophan-induced metabolome alterations of Penicillium roqueforti, which is typically used in making blue-mold cheese. Among the 24 metabolites identified, two tetrapeptides, namely, d-Phe-l-Val-d-Val-l-Tyr and d-Phe-l-Val-d-Val-l-Phe, as well as cis-bis(methylthio)silvatin, are reported for the first time as metabolites of P. roqueforti. Antimicrobial activity tests showed strong effects of the catabolic l-tryptophan metabolites 3-hydroxyanthranilic acid, anthranilic acid, and 3-indolacetic acid against Saccharomyces cerevisiae, with IC50 values between 15.6 and 24.0 μg/mL, while roquefortine C and cis-bis(methylthio)silvatin inhibited the growth of Gram-negative Escherichia coli and Gram-positive Bacillus subtilis with IC50 values between 30.0 and 62.5 μg/mL.
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    Highly replicated sampling reveals no diurnal vertical migration but stable species-specific vertical habitats in planktonic foraminifera (2019)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 41 (2). pp. 127-141.
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    Publikationsdatum: 2022-01-31
    Beschreibung: Diurnal vertical migration (DVM) is a widespread phenomenon in the upper ocean, but it remains unclear to what degree it also involves passively transported micro- and meso-zooplankton. These organisms are difficult to monitor by in situ sensing and observations from discrete samples are often inconclusive. Prime examples of such ambiguity are planktonic foraminifera, where contradictory evidence for DVM continues to cast doubt on the stability of species vertical habitats, which introduces uncertainties in geochemical proxy interpretation. To provide a robust answer, we carried out highly replicated randomised sampling with 41 vertically resolved plankton net hauls taken within 26 hours in a confined area of 400 km2 in the tropical North Atlantic, where DVM in larger plankton occurs. Manual enumeration of planktonic foraminifera cell density consistently reveals the highest total cell concentrations in the surface mixed layer (top 50 m) and analysis of cell density in seven individual species representing different shell sizes, life strategies and presumed depth habitats reveals consistent vertical habitats not changing over the 26 hours sampling period. These observations robustly reject the existence of DVM in planktonic foraminifera in a setting where DVM occurs in other organisms.
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    Sponges from Zanzibar host diverse prokaryotic communities with potential for natural product synthesis (2019)
    Oxford Univ. Press
    In:  FEMS Microbiology Ecology, 95 (4). fiz026.
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    Publikationsdatum: 2022-01-31
    Beschreibung: Sponges are one of the most dominant organisms in marine ecosystems. One reason for their success is their association with microorganisms that are besides the host itself responsible for the chemical defence. Sponge abundances have been increasing on coral reefs in the Western Indian Ocean (WIO) and are predicted to increase further with rising anthropogenic impacts on coral reefs. However, there is a paucity of information on chemical ecology of sponges from the WIO and their prokaryotic community composition. We used a combination of Illumina sequencing and a predictive metagenomic analysis to (i) assess the prokaryotic community composition of sponges from Zanzibar, (ii) predict the presence of KEGG metabolic pathways responsible for bioactive compound production and (iii) relate their presence to the degree of observed chemical defence in their respective sponge host. We found that sponges from Zanzibar host diverse prokaryotic communities that are host species-specific. Sponge-species and respective specimens that showed strong chemical defences in previous studies were also predicted to be highly enriched in various pathways responsible for secondary metabolite production. Hence, the combined sequencing and predictive metagenomic approach proved to be a useful indicator for the metabolic potential of sponge holobionts
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  • 59
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    Hyperspectral lmaging Based Method for Rapid Detection of Microplastics in the Intestinal Tracts of Fish (2019)
    American Chemical Society
    In:  Environmental Science & Technology, 53 (9). pp. 5151-5158.
    Details
    Publikationsdatum: 2022-01-31
    Beschreibung: Microplastics (MPs) in aquatic organisms are raising increasing concerns regarding their potential damage to ecosystems. To date, Raman and Fourier transform infrared spectroscopy techniques have been widely used for detection of MPs in aquatic organisms, which requires complex protocols of tissue digestion and MP separation and are time- and reagentconsuming. This novel approach directly separates, identifies, and characterizes MPs from the hyperspectral image (HSI) of the intestinal tract content in combination with a support vector machine classification model, instead of using the real digestion/separation protocols. The procedures of HSI acquisition ( 1 min) and data analysis (5 min) can be completed within 6 min plus the sample preparation and drying time (30 min) where necessary. This method achieved a promising efficiency (recall 〉98.80%, precision 〉96.22%) for identifying five types of MPs (particles 〉0.2 mm). Moreover, the method was also demonstrated to be effective on field fish from three marine fish species, revealing satisfying detection accuracy (particles 〉0.2 mm) comparable to Raman analysis. The present technique omits the digestion protocol (reagent free), thereby significantly reducing reagent consumption, saving time, and providing a rapid and efficient method for MP analysis.
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  • 60
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    Bacterial communities associated with individual transparent exopolymer particles (TEP) (2019)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 41 (4). pp. 561-565.
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    Publikationsdatum: 2022-01-31
    Beschreibung: Transparent exopolymer particles (TEP) are polysaccharide-rich microgels that are prevalent in the marine environment and have important roles in the aggregation of organic matter and carbon export from the euphotic zone. TEP are readily colonized by bacteria and utilized by specialized taxa, such as Alteromonadaceae. However, bacterial community composition specifically attached to natural TEP remains largely unknown. In this study, we isolated individual TEP from Plymouth Sound (UK) and performed DNA sequencing of the TEP-attached bacterial communities. We also sampled the cognate bulk seawater total bacterial communities for comparison. The bacterial communities associated with individual TEP showed distinct differences compared to the total bulk bacterioplankton communities, with Alteromonadaceae significantly more abundant on TEP. The TEP-associated Alteromonadaceae consisted of two operational taxonomic units that were closely related to Marinobacter and Glaciecola, both previously associated with biogenic aggregates and microgel-rich habitats. This study provides novel insight into marine bacterial–microgel interactions.
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  • 61
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    Human Consumption of Microplastics (2019)
    American Chemical Society
    In:  Environmental Science & Technology, 53 (12). pp. 7068-7074.
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    Publikationsdatum: 2022-01-31
    Beschreibung: Microplastics are ubiquitous across ecosystems, yet the exposure risk to humans is unresolved. Focusing on the American diet, we evaluated the number of microplastic particles in commonly consumed foods in relation to their recommended daily intake. The potential for microplastic inhalation and how the source of drinking water may affect microplastic consumption were also explored. Our analysis used 402 data points from 26 studies, which represents over 3600 processed samples. Evaluating approximately 15% of Americans’ caloric intake, we estimate that annual microplastics consumption ranges from 39000 to 52000 particles depending on age and sex. These estimates increase to 74000 and 121000 when inhalation is considered. Additionally, individuals who meet their recommended water intake through only bottled sources may be ingesting an additional 90000 microplastics annually, compared to 4000 microplastics for those who consume only tap water. These estimates are subject to large amounts of variation; however, given methodological and data limitations, these values are likely underestimates.
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  • 62
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    Rigorous Physicochemical Framework for Metal Ion Binding by Aqueous Nanoparticulate Humic Substances: Implications for Speciation Modeling by the NICA-Donnan and WHAM Codes (2019)
    American Chemical Society
    In:  Environmental Science & Technology, 53 (15). pp. 8516-8532.
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    Publikationsdatum: 2022-01-31
    Beschreibung: Latest knowledge on the reactivity of charged nanoparticulate complexants toward aqueous metal ions is discussed in mechanistic detail. We present a rigorous generic description of electrostatic and chemical contributions to metal ion binding by nanoparticulate complexants, and their dependence on particle size, particle type (i.e., reactive sites distributed within the particle body or confined to the surface), ionic strength of the aqueous medium, and the nature of the metal ion. For the example case of soft environmental particles such as fulvic and humic acids, practical strategies are delineated for determining intraparticulate metal ion speciation, and for evaluating intrinsic chemical binding affinities and heterogeneity. The results are compared with those obtained by popular codes for equilibrium speciation modeling (namely NICA-Donnan and WHAM). Physicochemical analysis of the discrepancies generated by these codes reveals the a priori hypotheses adopted therein and the inappropriateness of some of their key parameters. The significance of the characteristic time scales governing the formation and dissociation rates of metal−nanoparticle complexes in defining the relaxation properties and the complete equilibration of the metal− nanoparticulate complex dispersion is described. The dynamic features of nanoparticulate complexes are also discussed in the context of predictions of the labilities and bioavailabilities of the metal species.
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  • 63
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    On the pile-up effect and priors for Linf and M/K: Response to a Comment by Hordyk et al. on “A new approach for estimating stock status from length frequency data” (2019)
    Oxford Univ. Press
    Details
    Publikationsdatum: 2023-01-12
    Beschreibung: There is a recognized need for new methods with modest data requirements to provide preliminary estimates of stock status for data-limited stocks (e.g. Rudd and Thorson, 2018). Froese et al. (2018) provide such a method, which derives estimates of relative stock size from length frequency (LF) data of exploited stocks. They show that their length-based Bayesian biomass estimation method (LBB) can reproduce the “true” parameters used in simulated data and can approximate the relative stock size as estimated independently by more data-demanding methods in 34 real stocks. However, in a comment on LBB, Hordyk et al. (2019) claim (i) that the master equation of LBB is incomplete because it does not correct for the pile-up effect caused by aggregating length measurements into length classes or “bins”, (ii) that LBB is highly sensitive to equilibrium assumptions and wrongly uses maximum observed length (Lmax) for guidance in setting a prior for the estimation of asymptotic length (Linf), and (iii) that the default prior used by LBB for the ratio between natural mortality and somatic growth rate (M/K) of 1.5 (SD = 0.15) is inadequate for many exploited species. These comments are addressed below
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  • 64
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    The Chiloé Mw 7.6 earthquake of 25 December 2016 in Southern Chile and its relation to the Mw 9.5 1960 Valdivia earthquake (2018)
    Oxford Univ. Press
    In:  Geophysical Journal International, 213 (1). pp. 210-221.
    Details
    Publikationsdatum: 2021-02-08
    Beschreibung: On 25 December 2016, a Mw 7.6 earthquake broke a portion of the Southern Chilean subduction zone south of Chiloé Island, located in the central part of the Mw 9.5 1960 Valdivia earthquake. This region is characterized by repeated earthquakes in 1960 and historical times with very sparse interseismic activity due to the subduction of a young (~15 Ma), and therefore hot, oceanic plate. We estimate the co-seismic slip distribution based on a kinematic finite fault source model, and through joint inversion of teleseismic body waves and strong motion data. The coseismic slip model yields a total seismic moment of 3.94×1020 Nm that occurred over ~30 s, with the rupture propagating mainly downdip, reaching a peak-slip of ~4.2 m. Regional moment tensor inversion of stronger aftershocks reveals thrust type faulting at depths of the plate interface. The fore- and aftershock seismicity is mostly related to the subduction interface with sparse seismicity in the overriding crust. The 2016 Chiloé event broke a region with increased locking and most likely broke an asperity of the 1960 earthquake. The updip limit of the main event, aftershocks, foreshocks and interseismic activity are spatially similar, located ~15 km offshore and parallel to Chiloé Islands west coast. The coseismic slip model of the 2016 Chiloé earthquake suggests a peak slip of 4.2 m that locally exceeds the 3.38 m slip deficit that has accumulated since 1960. Therefore, the 2016 Chiloé earthquake possibly released strain that has built up prior to the 1960 Valdivia earthquake.
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  • 65
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    Revision of the Ocinebrina aciculata species complex (Mollusca: Gastropoda: Muricidae) in the northeastern Atlantic Ocean and Mediterranean Sea (2018)
    Oxford Univ. Press
    In:  Journal of Molluscan Studies, 84 (1). pp. 19-29.
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    Publikationsdatum: 2021-02-08
    Beschreibung: We used a molecular phylogenetic approach to investigate species delimitation and diversification in the northeastern Atlantic and Mediterranean musseldrills of the Ocinebrina aciculata complex, based on molecular data from topotypical material of many of the nominal taxa. The complex is shown to consist of at least five species: Ocinebrina aciculata (Lamarck, 1822) from the Atlantic and western Mediterranean; O. cf. corallina (Scacchi, 1836) from the central Mediterranean Sea; O. reinai Bonomolo & Crocetta, 2012 from the Tyrrhenian Sea; O. corallinoides Pallary, 1912 from the Gulf of Gabès; and O. aegeensis n. sp. currently known from the Aegean Sea only. The new species is differentiated from the other taxa by very subtle morphological diagnostic features, although it is clearly identified by genetic distance and apomorphic DNA-sequence characters. The identity of Murex corallinus Scacchi, 1836 (type species of Ocinebrina Jousseaume, 1880) could not be defined with certainty, pending genetic comparison of specimens of the â €? large Tyrrhenian morphotype' (corresponding to the neotype, but not assayed herein) with the assayed â €? small morphotype'.
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  • 66
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    Metagenomic binning reveals versatile nutrient cycling and distinct adaptive features in alphaproteobacterial symbionts of marine sponges (2018)
    Oxford Univ. Press
    In:  FEMS Microbiology Ecology, 94 (6). fiy074.
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    Publikationsdatum: 2021-02-08
    Beschreibung: Marine sponges are early-branched metazoans known to harbor dense and diverse microbial communities. Yet the role of the so far uncultivable alphaproteobacterial lineages that populate these sessile invertebrates remains unclear. We applied a sequence composition-dependent binning approach to assemble one Rhodospirillaceae genome from the Spongia officinalis microbial metagenome and contrast its functional features with those of closely related sponge-associated and free-living genomes. Both symbiotic and free-living Rhodospirillaceae shared a suite of common features, possessing versatile carbon, nitrogen, sulfur and phosphorus metabolisms. Symbiotic genomes could be distinguished from their free-living counterparts by the lack of chemotaxis and motility traits, enrichment of genes required for the uptake and utilization of organic sulfur compounds—particularly taurine—, higher diversity and abundance of ABC transporters, and a distinct repertoire of genes involved in natural product biosynthesis, plasmid stability, cell detoxification and oxidative stress remediation. These sessile symbionts may more effectively contribute to host fitness via nutrient exchange, and also host detoxification and chemical defense. Considering the worldwide occurrence and high diversity of sponge-associated Rhodospirillaceae verified here using a tailored in silico approach, we suggest that these organisms are not only relevant to holobiont homeostasis but also to nutrient cycling in benthic ecosystems.
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  • 67
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    Resolving the fine-scale velocity structure of continental hyperextension at the Deep Galicia Margin using full-waveform inversion (2018)
    Oxford Univ. Press
    In:  Geophysical Journal International, 212 (1). pp. 244-263.
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    Publikationsdatum: 2021-02-08
    Beschreibung: Continental hyperextension during magma-poor rifting at the Deep Galicia Margin is characterised by a complex pattern of faulting, thin continental fault blocks, and the serpentinisation, with local exhumation, of mantle peridotites along the S-reflector, interpreted as a detachment surface. In order to understand fully the evolution of these features, it is important to image seismically the structure and to model the velocity structure to the greatest resolution possible. Travel-time tomography models have revealed the long-wavelength velocity structure of this hyperextended domain, but are often insufficient to match accurately the short-wavelength structure observed in reflection seismic imaging. Here we demonstrate the application of two-dimensional (2D) time-domain acoustic full-waveform inversion to deep water seismic data collected at the Deep Galicia Margin, in order to attain a high resolution velocity model of continental hyperextension. We have used several quality assurance procedures to assess the velocity model, including comparison of the observed and modelled waveforms, checkerboard tests, testing of parameter and inversion strategy, and comparison with the migrated reflection image. Our final model exhibits an increase in the resolution of subsurface velocities, with particular improvement observed in the westernmost continental fault blocks, with a clear rotation of the velocity field to match steeply dipping reflectors. Across the S-reflector there is a sharpening in the velocity contrast, with lower velocities beneath S indicative of preferential mantle serpentinisation. This study supports the hypothesis that normal faulting acts to hydrate the upper mantle peridotite, observed as a systematic decrease in seismic velocities, consistent with increased serpentinisation. Our results confirm the feasibility of applying the full-waveform inversion method to sparse, deep water crustal datasets.
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  • 68
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    Integrating population genomics and biophysical models towards evolutionary-based fisheries management (2018)
    Oxford Univ. Press
    In:  ICES Journal of Marine Science, 75 (4). pp. 1245-1257.
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    Publikationsdatum: 2021-02-08
    Beschreibung: Overfishing and rapid environmental shifts pose severe challenges to the resilience and viability of marine fish populations. To develop and implement measures that enhance species’ adaptive potential to cope with those pressures while, at the same time, ensuring sustainable exploitation rates is part of the central goal of fisheries management. Here, we argue that a combination of biophysical modelling and population genomic assessments offer ideal management tools to define stocks, their physical connectivity and ultimately, their short-term adaptive potential. To date, biophysical modelling has often been confined to fisheries ecology whereas evolutionary hypotheses remain rarely considered. When identified, connectivity patterns are seldom explored to understand the evolution and distribution of adaptive genetic variation, a proxy for species’ evolutionary potential. Here, we describe a framework that expands on the conventional seascape genetics approach by using biophysical modelling and population genomics. The goals are to identify connectivity patterns and selective pressures, as well as putative adaptive variants directly responding to the selective pressures and, ultimately, link both to define testable hypotheses over species response to shifting ecological conditions and overexploitation.
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  • 69
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    A new approach for estimating stock status from length frequency data (2018)
    Oxford Univ. Press
    In:  ICES Journal of Marine Science, 75 (6). pp. 2004-2015.
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    Publikationsdatum: 2021-02-08
    Beschreibung: This study presents a new method (LBB) for the analysis of length frequency data from commercial catches. LBB works for species that grow throughout their lives, such as most commercially-important fish and invertebrates, and requires no input in addition to length frequency data. It estimates asymptotic length, length at first capture, relative natural mortality, and relative fishing mortality. Standard fisheries equations can then be used to approximate current exploited biomass relative to unexploited biomass. In addition, these parameters allow the estimation of length at first capture that would maximize catch and biomass for a given fishing effort, and estimation of a proxy for the relative biomass capable of producing maximum sustainable yields. Relative biomass estimates of LBB were not significantly different from the “true” values in simulated data and were similar to independent estimates from full stock assessments. LBB also presents a new indicator for assessing whether an observed size structure is indicative of a healthy stock. LBB results will obviously be misleading if the length frequency data do not represent the size composition of the exploited size range of the stock or if length frequencies resulting from the interplay of growth and mortality are masked by strong recruitment pulses.
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  • 70
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    Application of the perfectly matched layer in 3-D marine controlled-source electromagnetic modelling (2018)
    Oxford Univ. Press
    In:  Geophysical Journal International, 212 (1). pp. 333-344.
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    Publikationsdatum: 2021-02-08
    Beschreibung: In this study, the complex frequency-shifted perfectly matched layer (CFS-PML) in stretching Cartesian coordinates, is successfully applied to three-dimensional (3D) frequency-domain marine controlled-source electromagnetic (CSEM) field modelling. The Dirichlet boundary, which is usually used within the traditional framework of EM modeling algorithms, assumes the electric or magnetic field values are zero at the boundaries. This requires the boundaries be sufficiently far away from the sources in the area of interest. To mitigate the boundary artifacts, a large modelling area may be necessary even though cell sizes are allowed to grow toward the boundaries due to the diffusion of the electromagnetic wave propagation. Compared with the conventional Dirichlet boundary, the PML boundary is preferred as the modelling area of interest could be restricted to the target region and only a few absorbing layers surrounding can effectively depress the artificial boundary effect without losing the numerical accuracy. Furthermore, for joint inversion of seismic and marine CSEM data, if we used the PML for CSEM field simulation instead of the conventional Dirichlet, the modeling area for these two different geophysical data collected from the same survey area could the same, which is convenient for joint inversion grid matching. We apply the CFS-PML boundary to 3D marine CSEM modelling by using the staggered finite-difference (SFD) discretization. Numerical test indicates that the modeling algorithm using the CFS-PML also shows good accuracy compared to the Dirichlet. Furthermore, the modeling algorithm using the CFS-PML shows advantages in computational time and memory saving than that using the Dirichlet boundary. For the 3D example in this study, the memory saving using the PML is nearly 42 % and the time saving is around 48% compared to using the Dirichlet.
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  • 71
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    Sustainable use of Baltic Sea resources (2018)
    Oxford Univ. Press
    In:  ICES Journal of Marine Science, 75 (7). pp. 2434-2438.
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    Publikationsdatum: 2021-02-08
    Beschreibung: The BONUS symposium “Science delivery for sustainable use of the Baltic Sea living resources” held in Tallinn, Estonia, in October 2017 was an opportunity for the presentation and discussion of 107 papers that examined the state and dynamics of living resources of the Baltic Sea, and associated management challenges. The symposium included a half-day stakeholder panel discussion that addressed the main challenges related to sustainable management and matching research and policy/management needs. Based on the five symposium papers published in this Special Issue as well as the stakeholder panel discussion, it can be concluded that (i) new observations about the feeding ecology of clupeids supports a more complete understanding of trophic interactions in the pelagic realm and improved calibration of ecosystem models, (ii) to safequard sustainable and diverse fisheries resources, one should take into account the specific local characteristics of the fish community, (iii) to safeguard sustainable use of marine resources and mitigate cross-sectoral and transboundary conflicts, a risk-based approach should be adopted, and (iv) incorporation of scientific advice into management faces several obstacles including the reality that not all readily available knowledge is currently being incorporated into the decision-making process.
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  • 72
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    A three-dimensional view on biodiversity changes: spatial, temporal, and functional perspectives on fish communities in the Baltic Sea (2018)
    Oxford Univ. Press
    In:  ICES Journal of Marine Science, 75 (7). pp. 2463-2475.
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    Publikationsdatum: 2021-02-08
    Beschreibung: Fisheries and marine ecosystem-based management requires a holistic understanding of the dynamics of fish communities and their responses to changes in environmental conditions. Environmental conditions can simultaneously shape the spatial distribution and the temporal dynamics of a population, which together can trigger changes in the functional structure of communities. Here, we developed a comprehensive framework based on complementary multivariate statistical methodologies to simultaneously investigate the effects of environmental conditions on the spatial, temporal and functional dynamics of species assemblages. The framework is tested using survey data collected during more than 4000 fisheries hauls over the Baltic Sea between 2001 and 2016. The approach revealed the Baltic fish community to be structured into three sub-assemblages along a strong and temporally stable salinity gradient decreasing from West to the East. Additionally, we highlight a mismatch between species and functional richness associated with a lower functional redundancy in the Baltic Proper compared with other sub-areas, suggesting an ecosystem more susceptible to external pressures. Based on a large dataset of community data analysed in an innovative and comprehensive way, we could disentangle the effects of environmental changes on the structure of biotic communities-key information for the management and conservation of ecosystems.
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  • 73
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    Comparison of Raman and Fourier Transform Infrared Spectroscopy for the Quantification of Microplastics in the Aquatic Environment (2018)
    American Chemical Society (ACS)
    In:  Environmental Science & Technology, 52 (22). pp. 13279-13288.
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    Publikationsdatum: 2020-01-02
    Beschreibung: Microplastics (MPs, 〈5 mm) have been reported as emerging environmental contaminants, but reliable data are still lacking. We compared the two most promising techniques for MP analysis, namely, Raman and Fourier transform infrared (FTIR) spectroscopy, by analyzing MPs extracted from North Sea surface waters. Microplastics 〉500 μm were visually sorted and manually analyzed by μ-Raman and attenuated total reflection (ATR)-FTIR spectroscopy. Microplastics ≤500 μm were concentrated on gold-coated filters and analyzed by automated single-particle exploration coupled to μ-Raman (ASPEx-μ-Raman) and FTIR imaging (reflection mode). The number of identified MPs 〉500 μm was slightly higher for μ-Raman (+23%) than ATR-FTIR analysis. Concerning MPs ≤500 μm, ASPEx-μ-Raman quantified two-times higher MP numbers but required a four-times higher analysis time compared to FTIR imaging. Because ASPEx-μ-Raman revealed far higher MP concentrations (38–2621 particles m–3) compared to the results of previous water studies (0–559 particles m–3), the environmental concentration of MPs ≤500 μm may have been underestimated until now. This may be attributed to the exceptional increase in concentration with decreasing MP size found in this work. Our results demonstrate the need for further research to enable time-efficient routine application of ASPEx-μ-Raman for reliable MP counting down to 1 μm.
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  • 74
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    Grand Canonical Monte Carlo Simulations on Phase Equilibria of Methane, Carbon Dioxide, and Their Mixture Hydrates (2018)
    American Chemical Society (ACS)
    In:  The Journal of Physical Chemistry B, 122 (42). pp. 9724-9737.
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    Publikationsdatum: 2021-01-08
    Beschreibung: The cage occupancy plays a crucial role in the thermodynamic stability of clathrate hydrates and is an important quantity for understanding the CO2–CH4 replacement phenomenon. In this work, the occupancy isotherms of pure CH4, pure CO2, and their mixture in sI and sII hydrates are studied by GCMC + MD simulations. The adsorption of CH4 and CO2 + CH4 in the sI and sII hydrates can be categorized as the one-site Langmuir type. The calculated occupancy ratio θL/θS and the abundance ratio of CO2 to CH4 vary with the temperature and pressure, which provide the prerequisite information for the prediction of CH4 recovery yield at different conditions in the CO2–CH4 gas exchange process. The phase equilibria of clathrate hydrates of pure gases and mixtures are explored and the corresponding heat of dissociation and hydration numbers are determined. The current investigation provides new perspectives to understand the mechanism behind the gas adsorption behavior of clathrate hydrates.
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  • 75
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    Vertical structure of plankton communities in areas of European eel larvae distribution in the Sargasso Sea (2018)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 40 (4). pp. 362-375.
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    Publikationsdatum: 2021-02-08
    Beschreibung: The European and American eels spawn in the subtropical convergence zone (STCZ) in the Sargasso Sea, a dynamic and relatively productive area that is strongly influenced by front and eddy formations and subducted high-saline water masses. To understand how the physical and biological environments may affect the early life history of eels, we conducted a detailed bio-physical investigation of the water column at a site of high eel larvae abundance. Diel measurements and sampling in the upper 300 m revealed strong variations in hydrographic conditions and mean depths of different taxonomic groups; however, characteristics patterns of distribution were apparent. Most species showed diel vertical migrations, ascending about 20-30 m at night, whereas examples of night-time downward migration were also seen. European eel larvae were among the species showing more extensive diel vertical migration: their population mean depth changed from 160 m at day to 100 m at night where abundance peaked at 45 m depth. Distribution and migration of eel larvae corresponded to patterns observed for small hydrozoans, supporting a proposed predator-prey linkage. The study demonstrates the diverse and vertically strongly structured plankton community of STCZ where larvae of eel and other fish find a wide range of potential niches.
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    Shift towards larger diatoms in a natural phytoplankton assemblage under combined high-CO2 and warming conditions (2018)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 40 (4). pp. 391-406.
    Details
    Publikationsdatum: 2021-03-19
    Beschreibung: An indoor mesocosm experiment was carried out to investigate the combined effects of ocean acidification and warming on the species composition and biogeochemical element cycling during a winter/spring bloom with a natural phytoplankton assemblage from the Kiel fjord, Germany. The experimental setup consisted of a "Control" (ambient temperature of similar to 4.8 degrees C and similar to 535 +/- 25 mu atm pCO(2)), a "High-CO2" treatment (ambient temperature and initially 1020 +/- 45 mu atm pCO(2)) and a "Greenhouse" treatment (similar to 8.5 degrees C and initially 990 +/- 60 mu atm pCO(2)). Nutrient replete conditions prevailed at the beginning of the experiment and light was provided at in situ levels upon reaching pCO(2) target levels. A diatom-dominated bloom developed in all treatments with Skeletonema costatum as the dominant species but with an increased abundance and biomass contribution of larger diatom species in the Greenhouse treatment. Conditions in the Greenhouse treatment accelerated bloom development with faster utilization of inorganic nutrients and an earlier peak in phytoplankton biomass compared to the Control and High CO2 but no difference in maximum concentration of particulate organic matter (POM) between treatments. Loss of POM in the Greenhouse treatment, however, was twice as high as in the Control and High CO2 treatment at the end of the experiment, most likely due to an increased proportion of larger diatom species in that treatment. We hypothesize that the combination of warming and acidification can induce shifts in diatom species composition with potential feedbacks on biogeochemical element cycling.
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  • 77
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    Light effects on phytoplankton morphometric traits influence nutrient utilization ability (2018)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 40 (5). pp. 568-579.
    Details
    Publikationsdatum: 2021-02-08
    Beschreibung: Light and nutrients are essential resources for phytoplankton growth and considered to shape the size structure and other morphometric traits (surface:volume ratio, deviation from spherical shape) of phytoplankton communities. If morphometric traits influence the growth and resource use, shifts by one of the two factors should influence the capability to utilize the other factor. We performed a two-step experiment, where a natural phytoplankton community was first exposed to three different light levels (supposed to be limiting, saturating and slightly inhibiting for the majority of species) and grown until stationary phase. Then, the pre-conditioned communities were split into two nutrient treatments (control and saturating nutrient pulse) and again grown until stationary phase under the medium light intensity. During the experimental light phase, community mean cell-size increased with light, but surface:volume ratio and deviation from spherical shape decreased. Moreover, in response to the following nutrient pulse, the low light pre-conditioned communities showed the highest initial growth rates in response to the nutrient pulse. The high light pre-conditioned communities showed the highest conversion of the nutrient pulse into biomass during the stationary phase. These results demonstrate how the imprint of one environmental factor on trait distribution influences the ability to cope with another.
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  • 78
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    Quantifying top-down control and ecological traits of the scyphozoan Aurelia aurita through a dynamic plankton model (2018)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 40 (6). pp. 678-692.
    Details
    Publikationsdatum: 2021-02-08
    Beschreibung: Aurelia aurita (Linneaus, 1758) is a cosmopolitan scyphozoan, probably the most investigated jellyfish in temperate and highly productive coastal ecosystems. Despite a prominent top-down control in plankton food webs, a mechanistic understanding of A. aurita population dynamics and trophic interactions has been barely addressed. Here we develop a food web dynamic model to assess A. aurita role in the seasonal plankton dynamics of the Kiel Fjord, southwestern Baltic Sea. The model couples low trophic level dynamics, based on a classical Nutrient Phytoplankton Zooplankton Detritus (NPZD) model, to a stage-resolved copepod model (referencing Pseudocalanus sp.) and a jellyfish model (A. aurita ephyra and medusa) as consumers and predators, respectively. Simulations showed the relevance of high abundances of A. aurita, which appear related with warm winter temperatures, promoting a shift from a copepod-dominated food web to a ciliate and medusa dominated one. The model captured the intraspecific competition triggered by the medusae abundance and characterized by a negative relationship between population density and individual size/weight. Our results provide a mechanistic understanding of an emergent trait such as size shaping the food web functioning, driving predation rates and population dynamics of A. aurita, driving its sexual reproductive strategy at the end of the pelagic phase.
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  • 79
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    Impact of Ocean Acidification and Warming on the bioenergetics of developing eggs of Atlantic herring Clupea harengus (2018)
    Oxford Univ. Press
    In:  Conservation Physiology, 6 (1). coy050.
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    Publikationsdatum: 2018-12-17
    Beschreibung: Atlantic herring (Clupea harengus) is a benthic spawner, therefore its eggs are prone to encounter different water conditions during embryonic development, with bottom waters often depleted of oxygen and enriched in CO2. Some Atlantic herring spawning grounds are predicted to be highly affected by ongoing Ocean Acidification and Warming with water temperature increasing by up to +3°C and CO2 levels reaching ca. 1000 μatm (RCP 8.5). Although many studies investigated the effects of high levels of CO2 on the embryonic development of Atlantic herring, little is known about the combination of temperature and ecologically relevant levels of CO2. In this study, we investigated the effects of Ocean Acidification and Warming on embryonic metabolic and developmental performance such as mitochondrial function, respiration, hatching success (HS) and growth in Atlantic herring from the Oslo Fjord, one of the spawning grounds predicted to be greatly affected by climate change. Fertilized eggs were incubated under combinations of two PCO2 conditions (400 μatm and 1100 μatm) and three temperatures (6, 10 and 14°C), which correspond to current and end-of-the-century conditions. We analysed HS, oxygen consumption (MO2) and mitochondrial function of embryos as well as larval length at hatch. The capacity of the electron transport system (ETS) increased with temperature, reaching a plateau at 14°C, where the contribution of Complex I to the ETS declined in favour of Complex II. This relative shift was coupled with a dramatic increase in MO2 at 14°C. HS was high under ambient spawning conditions (6–10°C), but decreased at 14°C and hatched larvae at this temperature were smaller. Elevated PCO2 increased larval malformations, indicating sub-lethal effects. These results indicate that energetic limitations due to thermally affected mitochondria and higher energy demand for maintenance occur at the expense of embryonic development and growth.
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  • 80
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    A benchmark study of numerical implementations of the sea level equation in GIA modelling (2018)
    Oxford Univ. Press
    In:  Geophysical Journal International, 215 (1). pp. 389-414.
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    Publikationsdatum: 2021-02-08
    Beschreibung: The ocean load in glacial isostatic adjustment (GIA) modelling is represented by the so-called sea level equation (SLE). The SLE describes the mass redistribution of water between ice sheets and oceans on a deforming Earth. Despite various teams independently investigating GIA, there has been no systematic intercomparison among the numerical solvers of the SLE through which the methods may be validated. The goal of this paper is to present a series of synthetic examples designed for testing and comparing the numerical implementations of the SLE in GIA modelling. The 10 numerical codes tested combine various temporal and spatial parametrizations. The time-domain or Laplace-domain discretizations are used to solve the SLE through time, while spherical harmonics, finite differences or finite elements parametrize the GIA-related field variables spatially. The surface ice-water load and solid Earth’s topography are represented spatially either on an equiangular grid, a Gauss–Legendre or an equiarea grid with icosahedron-shaped spherical pixels. Comparisons are made in a series of five benchmark examples with an increasing degree of complexity. Due to the complexity of the SLE, there is no analytical solution to it. The accuracy of the numerical implementations is therefore assessed by the differences of the individual solutions with respect to a reference solution. While the benchmark study does not result in GIA predictions for a realistic loading scenario, we establish a set of agreed-upon results that can be extended in the future by including more complex case studies, such as solutions with realistic loading scenarios, the rotational feedback in the linear-momentum equation, and by considering a 3-D viscosity structure of the Earth’s mantle. The test computations performed so far show very good agreement between the individual results and their ability to capture the main features of sea-surface variation and the surface vertical displacement. The differences found can often be attributed to the different approximations inherent in the various algorithms. This shows the accuracy that can be expected from different implementations of the SLE, which helps to assess differences noted in the literature between predictions for realistic loading cases.
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  • 81
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    Experimental Study on Methane Production from Hydrate-Bearing Sandstone by Flue Gas Swapping (2018)
    American Chemical Society
    In:  Energy & Fuels, 32 (8). pp. 8167-8174.
    Details
    Publikationsdatum: 2020-07-31
    Beschreibung: Methane recovery from artificial hydrate-bearing sandstones by simulated flue gas swapping was tested using a core flooding experimental setup. Seven groups of experiments were conducted to investigate the effect of hydrate saturation as well as the initial porosity and permeability of sandstones on methane production and carbon dioxide capture. The results show that the CH4 recovery efficiency and the amount of CO2 captured increase with the increase of hydrate saturation at the same initial porosity and permeability of sandstone. The highest CH4 recovery obtained is 51.6% and 99.4% of CO2 in simulated flue gas is sequestered in the hydrate phase after swapping at 9.2 MPa and 277.15 K. Hydrate saturation was 82.5% and the initial porosity and permeability of sandstone are 25.1% and 49 mD, respectively. With the increase of initial porosity and permeability of sandstone, the CH4 recovery efficiency and the amount of CO2 captured increase when other conditions (the hydrate saturation and reaction time) are similar. For investigating the CH4-flue gas swapping mechanism, a micro-differential scanning calorimetry was used to test the heat changes in the whole reaction. No noticeable endothermic or exothermic phenomenon was detected in the CH4-flue gas swapping, which indicates that CH4 hydrate would form mixed hydrates directly instead of going through a dissociation and reformation process. Based on the observed experimental results, a CH4-flue gas swapping mechanism is proposed and the reaction process is found to be essentially controlled by mass transfer.
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  • 82
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    Marine dipole–dipole controlled source electromagnetic and coincident-loop transient electromagnetic experiments to detect seafloor massive sulphides: effects of three-dimensional bathymetry (2018)
    Oxford Univ. Press
    In:  Geophysical Journal International, 215 (3). pp. 2156-2171.
    Details
    Publikationsdatum: 2021-02-08
    Beschreibung: Seafloor massive sulphides (SMSs) are regarded as a potential future resource to satisfy the growing global demand of metals including copper, zinc and gold. Aside from mining and retrieving profitable amounts of massive sulphides from the seafloor, the present challenge is to detect and delineate significant SMS accumulations, which are generally located near mid-ocean ridges and along submarine volcanic arc and backarc spreading centres. Currently, several geophysical technologies are being developed to detect and quantify SMS occurrences that often exhibit measurable contrasts in their physical parameters compared to the surrounding host rock. Here, we use a short, fixed-offset controlled source electromagnetic (CSEM) system and a coincident-loop transient electromagnetic (TEM) system, which in theory allow the detection of SMS in the shallow seafloor due to a significant electrical conductivity contrast to their surroundings. In 2016, CSEM and TEM experiments were carried out at several locations near the Trans- Atlantic Geotraverse hydrothermal field to investigate shallow occurrences of massive sulphides below the seafloor. Measurements were conducted in an area that contains distinct SMS sites located several kilometres off-axis from the Mid-Atlantic ridge, some of which are still connected to hydrothermal activity and others where hydrothermal activity has ceased. Based on the quality of the acquired data, both experiments were operationally successful. However, the data analysis indicates bias caused by three-dimensional (3D) effects of the rough bathymetry in the study area and, thus, data interpretation remains challenging. Therefore, we study the influence of 3D bathymetry for marine CSEM and TEM experiments, focusing on shallow 3D conductors located beneath mound-like structures.We analyse synthetic inversion models for attributes associated with 3D distortions of CSEM and TEM data that are not sufficiently accounted for in conventional 1D (TEM) and 2D (CSEM) interpretation schemes. Before an adequate quantification of SMS in the region is feasible, these 3D effects need to be studied to avoid over/underestimation of SMS using the acquired EM data. The sensitivity of CSEM and TEM to bathymetry is investigated by means of 3D forward modelling, followed by 1D (TEM) and 2D (CSEM) inversion of the synthetic data using realistic error conditions. Subsequently, inversion models of the synthetic 3D data are analysed and compared to models derived from the measured data to illustrate that 3D distortions are evident in the recorded data sets.
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  • 83
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    Caught in the act: Anatomy of an ongoing benthic-planktonic transition in a marine protist (2017)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 39 (3). pp. 436-449.
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    Publikationsdatum: 2020-02-06
    Beschreibung: The transition from benthos to plankton requires multiple adaptations, yet so far it remains unclear how these are acquired in the course of the transition. To investigate this process, we analyzed the genetic diversity and distribution patterns of a group of foraminifera of the genus Bolivina with a tychopelagic mode of life (same species occurring both in benthos and plankton). We assembled a global sequence data set for this group from single-cell DNA extractions and occurrences in metabarcodes from pelagic environmental samples. The pelagic sequences all cluster within a single monophyletic clade within Bolivina. This clade harbors three distinct genetic lineages, which are associated with incipient morphological differentiation. All lineages occur in the plankton and benthos, but only one lineage exhibits no limit to offshore dispersal and has been shown to grow in the plankton. These observations indicate that the emergence of buoyancy regulation within the clade preceded the evolution of pelagic feeding and that the evolution of both traits was not channeled into a full transition into the plankton. We infer that in foraminifera, colonization of the planktonic niche may occur by sequential cooptation of independently acquired traits, with holoplanktonic species being recruited from tychopelagic ancestors
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  • 84
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    Seasonal variations of the sea surface microlayer at the Boknis Eck Times Series Station (Baltic Sea) (2017)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 39 (6). pp. 943-961.
    Details
    Publikationsdatum: 2020-02-06
    Beschreibung: The sea surface microlayer (SML) is the uppermost layer of the water column that links the ocean and atmosphere. It accumulates a variety of biogenic surface-active and buoyant substances, including gelatinous material, such as transparent exopolymer particles (TEP) and Coomassie stainable particles (CSP), potentially affecting air–sea exchange processes. Here, we studied the influence of the annual cycle of phytoplankton production on organic matter (OM) accumulation in the SML relative to the subsurface water (SSW). Sampling was performed monthly from April 2012 to November 2013 at the Boknis Eck Time Series Station (Baltic Sea). For SML sampling, we used the Garrett screen, while SSW samples were collected by Niskin bottles at 1 m depth. Samples were analyzed for carbohydrates, amino acids, TEP, CSP, chlorophyll a (SSW only) and bacterial abundance. Our data showed that the SML reflected the SSW during most parts of the year, with changes mainly responding to bloom formation and decay. OM composition during phytoplankton blooms clearly differed from periods of higher bacterial abundance. Of all components investigated, only the enrichment of total carbohydrates in the SML was inversely related to the wind speed indicating that wind-driven mixing also affected the accumulation of OM in the SML during our study.
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  • 85
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    Key Findings of the World’s First Offshore Methane Hydrate Production Test off the Coast of Japan: Toward Future Commercial Production (2017)
    American Chemical Society
    In:  Energy & Fuels, 31 (3). pp. 2607-2616.
    Details
    Publikationsdatum: 2017-11-20
    Beschreibung: Marine methane hydrate in sands has huge potential as an unconventional gas resource; however, no field test of their production potential had been conducted. Here, we report the world’s first offshore methane hydrate production test conducted at the eastern Nankai Trough and show key findings toward future commercial production. Geological analysis indicates that hydrate saturation reaches 80% and permeability in the presence of hydrate ranges from 0.01 to 10 mdarcies. Permeable (1–10 mdarcies) highly hydrate-saturated layers enable depressurization-induced gas production of approximately 20,000 Sm3/D with water of 200 m3/D. Numerical analysis reveals that the dissociation zone expands laterally 25 m at the front after 6 days. Gas rate is expected to increase with time, owing to the expansion of the dissociation zone. It is found that permeable highly hydrate-saturated layers increase the gas–water ratio of the production fluid. The identification of such layers is critically important to increase the energy efficiency and the technical feasibility of depressurization-induced gas production from hydrate reservoirs.
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  • 86
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    Origin and Evolution of Silicic Magmas in Oceanic Arcs; an in situ Study from St Lucia, Lesser Antilles (2017)
    Oxford Univ. Press
    In:  Journal of Petrology, 58 (7). pp. 1279-1318.
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    Publikationsdatum: 2020-02-06
    Beschreibung: Processes linked with the genesis, evolution and emplacement of silicic complexes in arcs are still poorly constrained. Of particular interest are the depth of magma production, the relative contribution of crystal fractionation versus crustal partial melting and the timescales involved. The Soufrière Volcanic Complex (SVC) on St Lucia is one of the largest silicic centres in the Lesser Antilles arc. Here we present the results of a detailed mineralogical study, including in situ Sr isotopes in plagioclase and in situ δ18O in dated zircons, of both SVC and Pre-SVC volcanic rocks to place constraints on the processes intrinsic to the development and evolution of the silicic complex. These data suggest that the production of silicic magma in the SVC occurs in two stages. The first stage involves differentiation of mafic magma by crustal assimilation and mineral fractionation in the middle–lower crust of the arc to produce magmas with intermediate compositions. These intermediate magmas are water-rich (∼7 wt %) and have high 87Sr/86Sr, Ba, Sr and La/Sm (∼5) compared with Pre-SVC lavas. Near-constant trace element and isotopic compositions throughout the SVC lifespan indicate that the same process was persistent over the last 600 kyr. In the second stage, the intermediate magmas are transferred to a shallower and more differentiated chamber (∼6 km depth). During ascent, any crystals or xenocrysts residual from stage one in the deeper chamber become fully resorbed and the magma crystallizes calcic amphibole microphenocrysts, followed by anorthite-rich plagioclase close to or at the water saturation depth. During mixing upon recharge within the shallow chamber, anorthite-rich plagioclase from the recharging magma is partially resorbed; so are the crystals in equilibrium with the resident differentiated magma. The recharge event probably causes chamber-wide convection. Mixing is thought to trigger eruption of the silicic complex magmas.
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  • 87
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    Phase-Controlled Colloidal Syntheses of Iron Sulfide Nanocrystals via Sulfur Precursor Reactivity and Direct Pyrite Precipitation (2017)
    American Chemical Society
    In:  Chemistry of Materials, 29 (19). pp. 8521-8530.
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    Publikationsdatum: 2020-07-27
    Beschreibung: In the colloidal synthesis of iron sulfides, a series of dialkyl disulfides, alkyl thiols, and dialkyl disulfides (allyl, benzyl, tert-butyl, and phenyl) were employed as sulfur sources. Their reactivity was found to tune the phase between pyrite (FeS2), greigite (Fe3S4), and pyrrhotite (Fe7S8). DFT was used to show that sulfur-rich phases were favored when the C–S bond strength was low in the organosulfurs, yet temperature dependent studies and other observations indicated the reasons for phase selectivity were more nuanced; the different precursors decomposed through different reaction mechanisms, some involving the oleylamine solvent. The formation of pyrite from diallyl disulfide was carefully studied as it was the only precursor to yield FeS2. Raman spectroscopy indicated that FeS2 forms directly without an FeS intermediate, unlike most synthetic procedures to pyrite. Diallyl disulfide releases persulfide (S–S)2– due to the lower C–S bond strength relative to the S–S bond strength, as well as facile decomposition in the presence of amines through SN2′ mechanisms at elevated temperatures.
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  • 88
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    Genetic diversity and evolution in eukaryotic phytoplankton: revelations from population genetic studies (2017)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 39 (2). pp. 165-179.
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    Publikationsdatum: 2020-02-06
    Beschreibung: Eukaryotic phytoplankton exhibit an enormous species richness, displaying a range of phylogenetic, morphological and physiological diversity. Yet, until recently, very little was known about the diversity, genetic variation and evolutionary processes within species and populations. An approach to explore this diversity and to understand evolution of phytoplankton is to use population genetics as a conceptual framework and methodology. Here, we discuss the patterns, processes and questions that population genetic studies have revealed in eukaryotic phytoplankton. First, we describe the main biological processes generating genetic variation. We specifically discuss the importance of life-cycle complexity for genetic and phenotypic diversity and consider how such diversity can be maintained during blooms when rapid asexual proliferation dominates. Next, we explore how genetic diversity is partitioned over time and space, with a focus on the processes shaping this structure, in particular selection and genetic exchange. Our aim is also to show how population genetics can be used to make inferences about realized dispersal and sexual recombination, as these processes are so difficult to study directly. Finally, we highlight important open questions and suggest promising avenues for future studies that will be made possible by new sequencing technologies
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  • 89
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    Spatial prediction of demersal fish diversity in the Baltic Sea: comparison of machine learning and regression-based techniques (2017)
    Oxford Univ. Press
    In:  ICES Journal of Marine Science, 74 (1). pp. 102-111.
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    Publikationsdatum: 2020-02-06
    Beschreibung: Marine spatial planning (MSP) is considered a valuable tool in the ecosystem-based management of marine areas. Predictive modelling may be applied in the MSP framework to obtain spatially explicit information about biodiversity patterns. The growing number of statistical approaches used for this purpose implies the urgent need for comparisons between different predictive techniques. In this study, we evaluated the performance of selected machine learning and regression-based methods that were applied for modelling fish community indices. We hypothesized that habitat features can influence fish assemblage and investigated the effect of environmental gradients on demersal fish diversity (species richness and Shannon–Weaver Index). We used fish data from the Baltic International Trawl Surveys (2001–2014) and maps of six potential predictors: bottom salinity, depth, seabed slope, growth season bottom temperature, seabed sediments and annual mean bottom current velocity. We compared the performance of six alternative modelling approaches: generalized linear models, generalized additive models, multivariate adaptive regression splines, support vector machines, boosted regression trees and random forests. We applied repeated 10-fold cross-validation, using accuracy as the measure of model quality. Finally, we selected random forest as the best performing algorithm and implemented it for the spatial prediction of fish diversity from the Baltic Proper to the Kattegat. To obtain information on the data reliability and confidence of the developed models, which are essential for MSP, we estimated the uncertainty of predictions with standard deviation of predictions obtained from all the trees in the ensemble random forest method. We showed how state-of-the-art predictive techniques, based on easily available data and simple Geographic Information System tools, can be used to obtain reliable spatial information about fish diversity. Our comparative work highlighted the potential of machine learning method to reduce prediction error in modelling of demersal fish diversity in the framework of MSP.
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  • 90
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    The Mozambique Ridge: a document of massive multistage magmatism (2017)
    Oxford Univ. Press
    In:  Geophysical Journal International, 208 (1). pp. 449-467.
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    Publikationsdatum: 2020-02-06
    Beschreibung: The Mozambique Ridge, a prominent basement high in the southwestern Indian Ocean, consists of four major geomorphological segments associated with numerous phases of volcanic activity in the Lower Cretaceous. The nature and origin of the Mozambique Ridge have been intensely debated with one hypothesis suggesting a Large Igneous Province origin. High-resolution seismic reflection data reveal a large number of extrusion centres with a random distribution throughout the southern Mozambique Ridge and the nearby Transkei Rise. Intrabasement reflections emerge from the extrusion centres and are interpreted to represent massive lava flow sequences. Such lava flow sequences are characteristic of eruptions leading to the formation of continental and oceanic flood basalt provinces, hence supporting a Large Igneous Province origin of the Mozambique Ridge. We observe evidence for widespread post-sedimentary magmatic activity that we correlate with a southward propagation of the East African Rift System. Based on our volumetric analysis of the southern Mozambique Ridge we infer a rapid sequential emplacement between ∼131 and ∼125 Ma, which is similar to the short formation periods of other Large Igneous Provinces like the Agulhas Plateau.
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  • 91
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    Magmatic Evolution and Source Variations at the Nifonea Ridge (New Hebrides Island Arc) (2017)
    Oxford Univ. Press
    In:  Journal of Petrology, 58 (3). pp. 473-494.
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    Publikationsdatum: 2020-02-06
    Beschreibung: The Nifonea submarine volcano rises 1000 m above the seafloor of the Vate Trough back-arc basin behind the New Hebrides island arc. This large volcanic edifice has a caldera of ∼8 km diameter and is connected to two ∼20 km long volcanic rift zones in the back-arc basin. We present new chemical and isotope data for volcanic glasses and whole-rocks from both the volcano and its rift zones. Lavas from Nifonea volcano show an evolution towards more incompatible element enrichment, with the most enriched lavas being the youngest eruption products on the caldera floor. These are products of significant fractional crystallization, show minor contamination by hydrothermal fluids (〈0·3%) and reflect mixing of melts derived from depleted upper mantle and melts from an enriched source similar to those occurring in the North Fiji Basin. The enrichment in Nb of these lavas is comparable with that of some lavas from the New Hebrides island arc (e.g. Mota Lava island), where these coexist with typical island arc basalts. The lavas erupted along the rift zones in the Vate Trough back-arc basin are relatively depleted in incompatible elements, indicating melting of depleted upper mantle with a minor addition of a sediment-derived fluid. Our observations suggest that the mantle beneath Vate Trough is heterogeneous on a small scale (〈20 km) and that the occurrence of these enriched and fertile mantle portions has a stronger control on melting processes than the influx from the subducting slab, as all samples were recovered at a similar distance from the trench.
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  • 92
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    Overwintering effects on the spring bloom dynamics of phytoplankton (2017)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 39 (5). pp. 772-780.
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    Publikationsdatum: 2020-02-06
    Beschreibung: The influence of winter on the selection of dominant taxa for the phytoplankton spring bloom was studied in batch culture experiments. Different natural phytoplankton assemblages from different phases of the temperate zone winter were exposed to varying periods of darkness (0, 6/7, 13 and 19 weeks) followed by a re-exposure to saturating light intensity for 14 days to experimentally simulate the onset of spring. The results showed that dark incubation has a strong effect on shaping the phytoplankton community composition. Many taxa disappeared in the absolute darkness. Dark survival ability might be an important contributing factor for the success of diatoms in spring. Different phytoplankton starting assemblages were dominated by the same bloom-forming diatoms, Skeletonema marinoi and Thalassosira spp., after dark incubation for only 6 weeks, irrespective of the high dissimilarities between phytoplankton communities. The growth capacity of surviving phytoplankton is almost unimpaired by darkness. Similar growth rates as that before darkness could be resumed for the surviving taxa with a potential lag time of 1–7 days dependent on taxon and the duration of darkness.
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  • 93
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    Use of Waste-Derived Biochar to Remove Copper from Aqueous Solution in a Continuous-Flow System (2017)
    American Chemical Society (ACS)
    In:  Industrial & Engineering Chemistry Research, 56 (44). pp. 12755-12762.
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    Publikationsdatum: 2020-02-06
    Beschreibung: The discharges from industrial processes constitute the main source of copper contamination in aqueous ecosystems. In this study we investigated the capacity of different types of biochar (derived from chicken manure, eucalyptus, corncob, olive mill and pine sawdust) to remove copper from aqueous solution in a continuous-flow system. The flow rate of the system strongly influenced the amount of copper retained. The adsorption to the corncob biochar varied from 5.51 to 3.48 mg Cu g-1 as the flux decreased from 13 to 2.5 mL min-1. The physicochemical characteristics of biochar determine the copper retention capacity and the underlying immobilization mechanisms. Biochars with high inorganic contents retain the largest amounts of copper and may be suitable for using in water treatment systems to remove heavy metals. The copper retention capacity of the biochars ranged between ~1.3 and 26 mg g-1 and varied in the following order: chicken manure 〉 olive mill 〉〉 corncob 〉 eucalyptus 〉 sawdust pine.
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  • 94
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    Winter–spring climate effects on small-sized copepods in the coastal Baltic Sea (2017)
    Oxford Univ. Press
    In:  ICES Journal of Marine Science, 74 (7). pp. 1855-1864.
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    Publikationsdatum: 2020-02-06
    Beschreibung: The general positive effect of warmer winters on the abundance of small-sized zooplankton in the following spring and early summer has been reported from different parts of the Baltic Sea, but the mechanism of this link is not clear. Although causal links cannot be deduced with confidence from observational data, sufficiently detailed analyses can nevertheless provide insights to the potential mechanisms. We present an example of such an analysis, scrutinizing the effects of winter and spring hydroclimate on the abundance of small-sized dominant calanoid copepods (Eurytemora affinis and Acartia spp.), using data from 2080 zooplankton samples collected over 55 years (1957–2012) from a shallow coastal habitat (Pärnu Bay, Gulf of Riga) in the Baltic Sea. Our results indicated that the milder winters brought about higher abundances, and reduced seasonality of small-sized copepods, whereas ambient sea surface temperature (SST) mostly affected the relative abundance of adult stages. The sliding window correlation tests revealed temporal shifts in the effects of controlling variables: with the continuous increase in SST, the effect of winter temperature on the abundance of Acartia spp. weakened. In contrast, E. affinis was consistently affected by SST, but the effect of winter temperature was more pronounced during the period of on average colder winters.
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  • 95
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    The sponge microbiome project (2017)
    Oxford Univ. Press
    In:  GigaScience, 6 (8).
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    Publikationsdatum: 2020-02-06
    Beschreibung: Marine sponges (phylum Porifera) are a diverse, phylogenetically deep-branching clade known for forming intimate partnerships with complex communities of microorganisms. To date, 16S rRNA gene sequencing studies have largely utilised different extraction and amplification methodologies to target the microbial communities of a limited number of sponge species, severely limiting comparative analyses of sponge microbial diversity and structure. Here, we provide an extensive and standardised dataset that will facilitate sponge microbiome comparisons across large spatial, temporal and environmental scales. Samples from marine sponges (n = 3569 specimens), seawater (n = 370), marine sediments (n = 65) and other environments (n = 29) were collected from different locations across the globe. This dataset incorporates at least 269 different sponge species, including several yet unidentified taxa. The V4 region of the 16S rRNA gene was amplified and sequenced from extracted DNA using standardised procedures. Raw sequences (total of 1.1 billion sequences) were processed and clustered with a) a standard protocol using QIIME closed-reference picking resulting in 39,543 Operational Taxonomic Units (OTU) at 97% sequence identity, b) a de novo protocol using Mothur resulting in 518,246 OTUs, and c) a new high-resolution Deblur protocol resulting in 83,908 unique bacterial sequences. Abundance tables, representative sequences, taxonomic classifications and metadata are provided. This dataset represents a comprehensive resource of sponge-associated microbial communities based on 16S rRNA gene sequences that can be used to address overarching hypotheses regarding host-associated prokaryotes, including host-specificity, convergent evolution, environmental drivers of microbiome structure and the sponge-associated rare biosphere.
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  • 96
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    Benefits, costs and taxonomic distribution of marine phytoplankton body size (2017)
    Oxford Univ. Press
    In:  Journal of Plankton Research, 39 (3). pp. 494-508.
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    Publikationsdatum: 2020-02-06
    Beschreibung: Phytoplankton cell or colony sizes range from 〈1 µm to several cm, i.e. 4–5 orders of magnitude in linear dimensions, which is roughly equivalent to the log-size span within terrestrial vegetation. It is commonplace to assume that smaller phytoplankton have an advantage in growth related traits while larger ones are more resistant to losses. However, the current state of literature calls for a more differentiated view. It is still controversial, whether smaller phytoplankton have higher maximal growth rates (µmax) or if there is a peak of µmax at intermediate size (102 µm3 cell volume). Smaller phytoplankton have an advantage in nutrient acquisition at low concentrations while larger phytoplankton have an advantage in utilizing nutrient pulses and exploiting vertical gradients. At equal density, larger phytoplankton experience bigger sinking losses. Small phytoplankton (〈5–10 µm) are more affected mostly from grazing by protists and tunicates, while larger phytoplankton are more affected by copepod and krill grazing. Size spectra within the most important higher taxa show some conspicuous differences between marine and lake phytoplankton, e.g. the absence of very large diatoms (〉105 µm3) in lake phytoplankton and the absence of large (〉103 µm3) green algae in marine plankton. Overall, size is one of the most important traits for the performance of phytoplankton, but it is overly simplistic to equate small size with metabolic advantages
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    Disentangling Incomplete Lineage Sorting and Introgression to Refine Species-Tree Estimates for Lake Tanganyika Cichlid Fishes (2017)
    Oxford Univ. Press
    In:  Systematic Biology, 66 (4). pp. 531-550.
    Details
    Publikationsdatum: 2020-10-26
    Beschreibung: Adaptive radiation is thought to be responsible for the evolution of a great portion of the past and present diversity of life. Instances of adaptive radiation, characterized by the rapid emergence of an array of species as a consequence to their adaptation to distinct ecological niches, are important study systems in evolutionary biology. However, because of the rapid lineage formation in these groups, and occasional gene flow between the participating species, it is often difficult to reconstruct the phylogenetic history of species that underwent an adaptive radiation. In this study, we present a novel approach for species-tree estimation in rapidly diversifying lineages, where introgression is known to occur, and apply it to a multimarker data set containing up to 16 specimens per species for a set of 45 species of East African cichlid fishes (522 individuals in total), with a main focus on the cichlid species flock of Lake Tanganyika. We first identified, using age distributions of most recent common ancestors in individual gene trees, those lineages in our data set that show strong signatures of past introgression. This led us to formulate three hypotheses of introgression between different lineages of Tanganyika cichlids: the ancestor of Boulengerochromini (or of Boulengerochromini and Bathybatini) received genomic material from the derived H-lineage; the common ancestor of Cyprichromini and Perissodini experienced, in turn, introgression from Boulengerochromini and/or Bathybatini; and the Lake Tanganyika Haplochromini and closely related riverine lineages received genetic material from Cyphotilapiini. We then applied the multispecies coalescent model to estimate the species tree of Lake Tanganyika cichlids, but excluded the lineages involved in these introgression events, as the multispecies coalescent model does not incorporate introgression. This resulted in a robust species tree, in which the Lamprologini were placed as sister lineage to the H-lineage (including the Eretmodini), and we identify a series of rapid splitting events at the base of the H-lineage. Divergence ages estimated with the multispecies coalescent model were substantially younger than age estimates based on concatenation, and agree with the geological history of the Great Lakes of East Africa. Finally, we formally tested the three hypotheses of introgression using a likelihood framework, and find strong support for introgression between some of the cichlid tribes of Lake Tanganyika. [Adaptive radiation; Cichlidae; introgression; Lake Tanganyika; species network.]
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  • 98
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    Methane Bubble Size Distributions, Flux, and Dissolution in a Freshwater Lake (2017)
    American Chemical Society (ACS)
    In:  Environmental Science & Technolog, 51 (23). pp. 13733-13739.
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    Publikationsdatum: 2020-02-06
    Beschreibung: The majority of methane produced in many anoxic sediments is released via ebullition. These bubbles are subject to dissolution as they rise, and dissolution rates are strongly influenced by bubble size. Current understanding of natural methane bubble size distributions is limited by the difficulty in measuring bubble sizes over wide spatial or temporal scales. Our custom optical bubble size sensors recorded bubble sizes and release timing at 8 locations in Upper Mystic Lake, MA continuously for 3 months. Bubble size distributions were spatially heterogeneous even over relatively small areas experiencing similar flux, suggesting that localized sediment conditions are important to controlling bubble size. There was no change in bubble size distributions over the 3 month sampling period, but mean bubble size was positively correlated with daily ebullition flux. Bubble data was used to verify the performance of a widely used bubble dissolution model, and the model was then used to estimate that bubble dissolution accounts for approximately 10% of methane accumulated in the hypolimnion during summer stratification, and at most 15% of the diffusive air–water–methane flux from the epilimnion.
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  • 99
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    Synthesis of 12,12′-azo-13,13′-diepi-Ritterazine N (2017)
    American Chemical Society
    In:  The Journal of Organic Chemistry, 82 (1). pp. 269-275.
    Details
    Publikationsdatum: 2020-01-02
    Beschreibung: A synthesis of the 12,12′-azo-analogue of ritterazine N from hecogenin is reported. Ring contraction of two 6/5 bicyclic ring systems, one trans-fused and another spiro, to 5/5 spiro ring systems is accomplished with excellent stereochemical control. Key transformations include an abnormal Baeyer–Villiger oxidation, a Norrish type I cleavage, an intramolecular dipolar [3 + 2] cycloaddition, and an intramolecular oxymecuration. Failing to uncover the β-OH ketone from the isoxazoline ring, we end up with a synthesis of a cyclic analogue of ritterazine N.
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    Lost, but Found with Nile Red: A Novel Method for Detecting and Quantifying Small Microplastics (1 mm to 20 μm) in Environmental Samples (2017)
    American Chemical Society
    In:  Environmental Science & Technology, 51 (23). pp. 13641-13648.
    Details
    Publikationsdatum: 2020-09-02
    Beschreibung: Marine plastic debris is a global environmental problem. Surveys have shown that 〈5 mm plastic particles, known as microplastics, are significantly more abundant in surface seawater and on shorelines than larger plastic particles are. Nevertheless, quantification of microplastics in the environment is hampered by a lack of adequate high-throughput methods for distinguishing and quantifying smaller size fractions (〈1 mm), and this has probably resulted in an underestimation of actual microplastic concentrations. Here we present a protocol that allows high-throughput detection and automated quantification of small microplastic particles (20–1000 μm) using the dye Nile red, fluorescence microscopy, and image analysis software. This protocol has proven to be highly effective in the quantification of small polyethylene, polypropylene, polystyrene, and nylon-6 particles, which frequently occur in the water column. Our preliminary results from sea surface tows show a power-law increase in small microplastics (i.e., 〈1 mm) with a decreasing particle size. Hence, our data help to resolve speculation about the “apparent” loss of this fraction from surface waters. We consider that this method presents a step change in the ability to detect small microplastics by substituting the subjectivity of human visual sorting with a sensitive and semiautomated procedure.
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