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  • American Meteorological Society
  • American Association for the Advancement of Science (AAAS)
  • 2015-2019  (31,324)
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  • 1
    Publication Date: 2019-03-27
    Description: The first in situ measurements of seawater density that referred to a geographical position at sea and time of the year were carried out by Count Luigi Ferdinando Marsili between 1679 and 1680 in the Adriatic Sea, Aegean Sea, Marmara Sea, and the Bosporus. Not only was this the first investigation with documented oceanographic measurements carried out at stations, but themeasurements were described in such an accurateway that the authorswere able to reconstruct the observations in modern units. These first measurements concern the ‘‘specific gravity’’ of seawaters (i.e., the ratio between fluid densities). The data reported in the historical oceanographic treatise Osservazioni intorno al Bosforo Tracio (Marsili) allowed the reconstruction of the seawater density at different geographic locations between 1679 and 1680. Marsili’s experimental methodology included the collection of surface and deep water samples, the analysis of the samples with a hydrostatic ampoule, and the use of a reference water to standardize the measurements.Acomparison of reconstructed densities with present-day values shows an agreement within 10%–20% uncertainty, owing to various aspects of the measurement methodology that are difficult to reconstruct from the documentary evidence. Marsili also measured the current speed and the depth of the current inversion in the Bosporus, which are consistent with the present-day knowledge. The experimental data collected in the Bosporus enabledMarsili to enunciate a theory on the cause of the two-layer flow at the strait, demonstrated by his laboratory experiment and later confirmed by many analytical and numerical studies.
    Description: American Meteorological Society.
    Description: Published
    Description: 845 - 860
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: Ocean ; Density currents ; Measurements ; Ship observations
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in he balance of salinity variance in a partially stratified estuary: Implications for exchange flow, mixing, and stratification. Journal of Physical Oceanography, 48(12), (2018) 2887-2899., doi: 10.1175/JPO-D-18-0032.1.
    Description: Salinity variance dissipation is related to exchange flow through the salinity variance balance equation, and meanwhile its magnitude is also proportional to the turbulence production and stratification inside the estuary. As river flow increases, estuarine volume-integrated salinity variance dissipation increases owing to more variance input from the open boundaries driven by exchange flow and river flow. This corresponds to the increased efficient conversion of turbulence production to salinity variance dissipation due to the intensified stratification with higher river flow. Through the spring–neap cycle, the temporal variation of salinity variance dissipation is more dependent on stratification than turbulence production, so it reaches its maximum during the transition from neap to spring tides. During most of the transition time from spring to neap tides, the advective input of salinity variance from the open boundaries is larger than dissipation, resulting in the net increase of variance, which is mainly expressed as vertical variance, that is, stratification. The intensified stratification in turn increases salinity variance dissipation. During neap tides, a large amount of enhanced salinity variance dissipation is induced by the internal shear stress near the halocline. During most of the transition time from neap to spring tides, dissipation becomes larger than the advective input, so salinity variance decreases and the stratification is destroyed.
    Description: TW was supported by the National Key R&D Program of China (Grant 2017YFA0604104), National Natural Science Foundation of China (Grant 41706002), Natural Science Foundation of Jiangsu Province (Grant BK20170864), and MEL Visiting Fellowship (MELRS1617). WRG was supported by NSF Grant OCE 1736539. Part of this work is finished during TW’s visit in MEL and WHOI. We would like to acknowledge John Warner for providing the codes of the Hudson estuary model, and Parker MacCready, the editor, and two reviewers for their insightful suggestions on improving the manuscript.
    Description: 2019-06-06
    Keywords: Estuaries ; Dynamics ; Mixing ; Density Currents
    Repository Name: Woods Hole Open Access Server
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  • 3
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 147(1), (2019): 389-406. doi: 10.1175/MWR-D-18-0158.1.
    Description: The quasi-biennial oscillation (QBO) is stratified by stratospheric zonal wind direction and height into four phase pairs [easterly midstratospheric winds (QBOEM), easterly lower-stratospheric winds, westerly midstratospheric winds (QBOWM), and westerly lower-stratospheric winds] using an empirical orthogonal function analysis of daily stratospheric (100–10 hPa) zonal wind data during 1980–2017. Madden–Julian oscillation (MJO) events in which the MJO convective envelope moved eastward across the Maritime Continent (MC) during 1980–2017 are identified using the Real-time Multivariate MJO (RMM) index and the outgoing longwave radiation (OLR) MJO index (OMI). Comparison of RMM amplitudes by the QBO phase pair over the MC (RMM phases 4 and 5) reveals that boreal winter MJO events have the strongest amplitudes during QBOEM and the weakest amplitudes during QBOWM, which is consistent with QBO-driven differences in upper-tropospheric lower-stratospheric (UTLS) static stability. Additionally, boreal winter RMM events over the MC strengthen during QBOEM and weaken during QBOWM. In the OMI, those amplitude changes generally shift eastward to the eastern MC and western Pacific Ocean, which may result from differences in RMM and OMI index methodologies. During boreal summer, as the northeastward-propagating boreal summer intraseasonal oscillation (BSISO) becomes the dominant mode of intraseasonal variability, these relationships are reversed. Zonal differences in UTLS stability anomalies are consistent with amplitude changes of eastward-propagating MJO events across the MC during boreal winter, and meridional stability differences are consistent with amplitude changes of northeastward-propagating BSISO events during boreal summer. Results remain consistent when stratifying by neutral ENSO phase.
    Description: The authors are grateful for the funding provided by the Office of Naval Research Propagation of Intra-Seasonal Tropical Oscillations (ONR PISTON) Award N0001416WX01752 and the USNA Trident Scholar program. The authors also appreciate the helpful comments of the two external reviewers.
    Description: 2019-07-07
    Keywords: Maritime Continent ; Madden-Julian oscillation ; Quasibiennial oscillation
    Repository Name: Woods Hole Open Access Server
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  • 4
    Publication Date: 2019-10-29
    Description: The ozonesonde is a small balloon-borne instrument that is attached to a standard radiosonde to measure profiles of ozone from the surface to 35 km with ∼100-m vertical resolution. Ozonesonde data constitute a mainstay of satellite calibration and are used for climatologies and analysis of trends, especially in the lower stratosphere where satellites are most uncertain. The electrochemical concentration cell (ECC) ozonesonde has been deployed at ∼100 stations worldwide since the 1960s, with changes over time in manufacture and procedures, including details of the cell chemical solution and data processing. As a consequence, there are biases among different stations and discontinuities in profile time series from individual site records. For 22 years the Jülich (Germany) Ozonesonde Intercomparison Experiment (JOSIE) has periodically tested ozonesondes in a simulation chamber designated the World Calibration Centre for Ozonesondes (WCCOS) by WMO. During October–November 2017 a JOSIE campaign evaluated the sondes and procedures used in Southern Hemisphere Additional Ozonesondes (SHADOZ), a 14-station sonde network operating in the tropics and subtropics. A distinctive feature of the 2017 JOSIE was that the tests were conducted by operators from eight SHADOZ stations. Experimental protocols for the SHADOZ sonde configurations, which represent most of those in use today, are described, along with preliminary results. SHADOZ stations that follow WMO-recommended protocols record total ozone within 3% of the JOSIE reference instrument. These results and prior JOSIEs demonstrate that regular testing is essential to maintain best practices in ozonesonde operations and to ensure high-quality data for the satellite and ozone assessment communities.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 5
    Publication Date: 2023-02-23
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(5) (2019): 1551-1571. doi:10.1175/JCLI-D-18-0444.1.
    Description: Previous studies have documented a poleward shift in the subsiding branches of Earth’s Hadley circulation since 1979 but have disagreed on the causes of these observed changes and the ability of global climate models to capture them. This synthesis paper reexamines a number of contradictory claims in the past literature and finds that the tropical expansion indicated by modern reanalyses is within the bounds of models’ historical simulations for the period 1979–2005. Earlier conclusions that models were underestimating the observed trends relied on defining the Hadley circulation using the mass streamfunction from older reanalyses. The recent observed tropical expansion has similar magnitudes in the annual mean in the Northern Hemisphere (NH) and Southern Hemisphere (SH), but models suggest that the factors driving the expansion differ between the hemispheres. In the SH, increasing greenhouse gases (GHGs) and stratospheric ozone depletion contributed to tropical expansion over the late twentieth century, and if GHGs continue increasing, the SH tropical edge is projected to shift further poleward over the twenty-first century, even as stratospheric ozone concentrations recover. In the NH, the contribution of GHGs to tropical expansion is much smaller and will remain difficult to detect in a background of large natural variability, even by the end of the twenty-first century. To explain similar recent tropical expansion rates in the two hemispheres, natural variability must be taken into account. Recent coupled atmosphere–ocean variability, including the Pacific decadal oscillation, has contributed to tropical expansion. However, in models forced with observed sea surface temperatures, tropical expansion rates still vary widely because of internal atmospheric variability.
    Description: We thank Ori Adam, Nick Davis, Isaac Held, Tim Merlis, Lorenzo Polvani, and one anonymous reviewer for helpful comments and suggestions. We thank U.S. CLIVAR and the International Space Science Institute (ISSI) for funding working groups that stimulated this project. We thank all members of the working groups for helpful discussions, and the U.S. CLIVAR and ISSI offices and their sponsoring agencies (NASA,NOAA,NSF,DOE, ESA, Swiss Confederation, Swiss Academy of Sciences, and University of Bern) for supporting these groups and activities.We acknowledge WCRP’sWorking Group on CoupledModelling, which is responsible for CMIP, and we thank the climate modeling groups (Table 2) for producing and making available their model output. For CMIP, the U.S. DOE PCMDI provides coordinating support and led development of software infrastructure in partnership with the Global Organization for Earth System Science Portals.
    Description: 2019-08-06
    Keywords: Hadley circulation ; Climate models ; Reanalysis data ; Multidecadal variability ; Pacific decadal oscillation ; Trends
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(7), (2019): 1889-1904, doi:10.1175/JPO-D-19-0053.1.
    Description: A high-resolution numerical model, together with in situ and satellite observations, is used to explore the nature and dynamics of the dominant high-frequency (from one day to one week) variability in Denmark Strait. Mooring measurements in the center of the strait reveal that warm water “flooding events” occur, whereby the North Icelandic Irminger Current (NIIC) propagates offshore and advects subtropical-origin water northward through the deepest part of the sill. Two other types of mesoscale processes in Denmark Strait have been described previously in the literature, known as “boluses” and “pulses,” associated with a raising and lowering of the overflow water interface. Our measurements reveal that flooding events occur in conjunction with especially pronounced pulses. The model indicates that the NIIC hydrographic front is maintained by a balance between frontogenesis by the large-scale flow and frontolysis by baroclinic instability. Specifically, the temperature and salinity tendency equations demonstrate that the eddies act to relax the front, while the mean flow acts to sharpen it. Furthermore, the model reveals that the two dense water processes—boluses and pulses (and hence flooding events)—are dynamically related to each other and tied to the meandering of the hydrographic front in the strait. Our study thus provides a general framework for interpreting the short-time-scale variability of Denmark Strait Overflow Water entering the Irminger Sea.
    Description: MAS was supported by the National Science Foundation (NSF) under Grants OCE-1558742 and OCE-1534618. RSP, PL, and DM were supported by NSF under Grants OCE-1558742 and OCE-1259618. WJvA was supported by the Helmholtz Infrastructure Initiative FRAM. TWNH and MA were supported by NSF under Grants OCE-1633124 and OCE-118123.
    Description: 2020-07-01
    Keywords: Baroclinic flows ; Frontogenesis/frontolysis ; Meridional overturning circulation ; Ocean dynamics ; Topographic effects
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-10-27
    Description: Author Posting. © American Meteorological Society, 2018. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Marine Science and Engineering 6(4), (2018): 144. doi:10.3390/jmse6040144.
    Description: Geochronologies derived from sediment cores in coastal locations are often used to infer event bed characteristics such as deposit thicknesses and accumulation rates. Such studies commonly use naturally occurring, short-lived radioisotopes, such as Beryllium-7 (7Be) and Thorium-234 (234Th), to study depositional and post-depositional processes. These radioisotope activities, however, are not generally represented in sediment transport models that characterize coastal flood and storm deposition with grain size patterns and deposit thicknesses. We modified the Community Sediment Transport Modeling System (CSTMS) to account for reactive tracers and used this capability to represent the behavior of these short-lived radioisotopes on the sediment bed. This paper describes the model and presents results from a set of idealized, one-dimensional (vertical) test cases. The model configuration represented fluvial deposition followed by periods of episodic storm resuspension. Sensitivity tests explored the influence on seabed radioisotope profiles by the intensities of bioturbation and wave resuspension and the thickness of fluvial deposits. The intensity of biodiffusion affected the persistence of fluvial event beds as evidenced by 7Be. Both resuspension and biodiffusion increased the modeled seabed inventory of 234Th. A thick fluvial deposit increased the seabed inventory of 7Be and 234Th but mixing over time greatly reduced the difference in inventory of 234Th in fluvial deposits of different thicknesses.
    Description: The Bureau of Ocean Energy Management (BOEM) provided funding for Birchler, Harris, and Kniskern. During his M.S. program Birchler received additional funds from VIMS’ Office of Academic Studies. This work was partially supported by the U.S. Geological Survey, Coastal and Marine Geology Program.
    Keywords: Numerical model ; Sediment transport ; Marine ; Short-lived radioisotopes
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(2), (2019): 549-573. doi: 10.1175/JCLI-D-18-0413.1.
    Description: Time series of surface meteorology and air–sea fluxes from the northern Bay of Bengal are analyzed, quantifying annual and seasonal means, variability, and the potential for surface fluxes to contribute significantly to variability in surface temperature and salinity. Strong signals were associated with solar insolation and its modulation by cloud cover, and, in the 5- to 50-day range, with intraseasonal oscillations (ISOs). The northeast (NE) monsoon (DJF) was typically cloud free, with strong latent heat loss and several moderate wind events, and had the only seasonal mean ocean heat loss. The spring intermonsoon (MAM) was cloud free and had light winds and the strongest ocean heating. Strong ISOs and Tropical Cyclone Komen were seen in the southwest (SW) monsoon (JJA), when 65% of the 2.2-m total rain fell, and oceanic mean heating was small. The fall intermonsoon (SON) initially had moderate convective systems and mean ocean heating, with a transition to drier winds and mean ocean heat loss in the last month. Observed surface freshwater flux applied to a layer of the observed thickness produced drops in salinity with timing and magnitude similar to the initial drops in salinity in the summer monsoon, but did not reproduce the salinity variability of the fall intermonsoon. Observed surface heat flux has the potential to cause the temperature trends of the different seasons, but uncertainty in how shortwave radiation is absorbed in the upper ocean limits quantifying the role of surface forcing in the evolution of mixed layer temperature.
    Description: The deployment of the Woods Hole Oceanographic Institution (WHOI) mooring and RW and JTF were supported by the U.S. Office of Naval Research, Grant N00014-13-1-0453. DS acknowledges support from the Ministry of Earth Sciences under India’s National Monsoon Mission. HS acknowledges support from the Office of Naval Research Grants N00014-13-1-0453 and N00014-17-12398. The deployment of the WHOI mooring was done by RV Sagar Nidhi and the recovery by RV Sagar Kanya; the help of the crew and science parties is gratefully acknowledged as is the ongoing support at NIOT in Chennai and by other colleagues in India of this mooring work. The work of the staff of the WHOI Upper Ocean Process Group in the design, building, deployment, and recovery of the mooring and in processing the data is gratefully acknowledged. The software for the wavelet analysis was provided by Torrence and Compo (1998). Feedback on the paper by Dr. Amit Tandon and two anonymous reviewers is gratefully acknowledged. This paper is dedicated to Dr. Frank Bradley.
    Description: 2019-06-28
    Keywords: Atmosphere-ocean interaction ; Monsoons ; Air-sea interaction ; Surface fluxes
    Repository Name: Woods Hole Open Access Server
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  • 9
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    American Meteorological Society
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography, 49 (2), (2019): 607-630, doi:10.1175/JPO-D-18-0166.1.
    Description: The Lagrangian motion in the eddy field produced from an unstable retrograde jet along the shelf break is studied from idealized numerical experiments with a primitive equation model. The jet is initially in thermal wind balance with a cross-isobath density gradient and is not subjected to any atmospheric forcing. Over the course of the model integration, the jet becomes unstable and produces a quasi-stationary eddy field over a 2-month period. During this period, the cross-slope flow at the shelf break is characterized by along-slope correlation scales of O(10) km and temporal correlation scales of a few days. The relative dispersion of parcels across isobaths is found to increase with time as tb, where 1 〈 b 〈 2. This mixed diffusive–ballistic regime appears to reflect the combined effects of (i) the short length scales of velocity correlation at the shelf break and (ii) the seaward excursion of monopolar and dipolar vortices. Cross-slope dispersion is greater offshore of the front than inshore of the front, as offshore parcels are both subducted onshore below density surfaces and translated offshore with eddies. Nonetheless, the exchange of parcels across the jet remains very limited on the monthly time scale. Particles originating from the bottom experience upward displacements of a few tens of meters and seaward displacements of O(100) km, suggesting that the eddy activity engendered by an unstable along-slope jet provides another mechanism for bottom boundary layer detachment near the shelf edge.
    Description: The author expresses his gratitude to the researchers who contributed to the development and public dissemination of POM [for a list of contributors, see Mellor (2002) and comments in the source code]. Discussions with Kenneth Brink, Hyodae Seo, and Weifeng Zhang have been helpful. Comments provided by Kenneth Brink on a draft are gratefully acknowledged. The criticism from two anonymous reviewers allowed us to better focus the manuscript and to significantly improve its clarity. This work has been supported by Grant OCE-1556400 from the U.S. National Science Foundation.
    Description: 2020-02-18
    Keywords: Dispersion ; Eddies ; Frontogenesis/frontolysis ; Instability ; Lagrangian circulation/transport ; Jets
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019): 1577-1592, doi:10.1175/JPO-D-18-0124.1.
    Description: The main source feeding the abyssal circulation of the North Pacific is the deep, northward flow of 5–6 Sverdrups (Sv; 1 Sv ≡ 106 m3 s−1) through the Samoan Passage. A recent field campaign has shown that this flow is hydraulically controlled and that it experiences hydraulic jumps accompanied by strong mixing and dissipation concentrated near several deep sills. By our estimates, the diapycnal density flux associated with this mixing is considerably larger than the diapycnal flux across a typical isopycnal surface extending over the abyssal North Pacific. According to historical hydrographic observations, a second source of abyssal water for the North Pacific is 2.3–2.8 Sv of the dense flow that is diverted around the Manihiki Plateau to the east, bypassing the Samoan Passage. This bypass flow is not confined to a channel and is therefore less likely to experience the strong mixing that is associated with hydraulic transitions. The partitioning of flux between the two branches of the deep flow could therefore be relevant to the distribution of Pacific abyssal mixing. To gain insight into the factors that control the partitioning between these two branches, we develop an abyssal and equator-proximal extension of the “island rule.” Novel features include provisions for the presence of hydraulic jumps as well as identification of an appropriate integration circuit for an abyssal layer to the east of the island. Evaluation of the corresponding circulation integral leads to a prediction of 0.4–2.4 Sv of bypass flow. The circulation integral clearly identifies dissipation and frictional drag effects within the Samoan Passage as crucial elements in partitioning the flow.
    Description: This work was supported by the National Science Foundation under Grants OCE-1029268, OCE-1029483, OCE-1657264, OCE-1657870, OCE-1658027, and OCE-1657795. We thank the captain, crew, and engineers at APL/UW for their hard work and skill.
    Description: 2020-06-11
    Keywords: Abyssal circulation ; Bottom currents ; Boundary currents ; Channel flows ; Mixing ; Transport
    Repository Name: Woods Hole Open Access Server
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  • 11
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(9), (2019): 2337-2343, doi:10.1175/JPO-D-19-0097.1.
    Description: The weakly unstable, two-layer model of baroclinic instability is studied in a configuration in which the flow is perturbed at the inflow section of a channel by a slow and periodic perturbation. In a parameter regime where the governing equation would be the Lorenz equations for chaos if the development occurs only in time, the solution behavior becomes considerably more complex as a function of time and downstream coordinate. In the absence of the beta effect it has earlier been shown that the chaotic behavior along characteristics renders the solution nearly discontinuous in the slow downstream coordinate of the asymptotic model. The additional presence of the beta effect, although expunging the chaos for large enough values of the beta parameter, also provides an additional mechanism for abrupt spatial change.
    Description: 2020-02-28
    Keywords: Cyclogenesis/cyclolysis ; Eddies ; Microscale processes/variability ; Stability
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  • 12
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric Sciences 76(10), (2019): 3013-3027, doi:10.1175/JAS-D-19-0095.1.
    Description: Recently Nakamura and Huang proposed a semiempirical, one-dimensional model of atmospheric blocking based on the observed budget of local wave activity in the boreal winter. The model dynamics is akin to that of traffic flow, wherein blocking manifests as traffic jams when the streamwise flux of local wave activity reaches capacity. Stationary waves modulate the jet stream’s capacity to transmit transient waves and thereby localize block formation. Since the model is inexpensive to run numerically, it is suited for computing blocking statistics as a function of climate variables from large-ensemble, parameter sweep experiments. We explore sensitivity of blocking statistics to (i) stationary wave amplitude, (ii) background jet speed, and (iii) transient eddy forcing, using frequency, persistence, and prevalence as metrics. For each combination of parameters we perform 240 runs of 180-day simulations with aperiodic transient eddy forcing, each time randomizing the phase relations in forcing. The model climate shifts rapidly from a block-free state to a block-dominant state as the stationary wave amplitude is increased and/or the jet speed is decreased. When eddy forcing is increased, prevalence increases similarly but frequency decreases as blocks merge and become more persistent. It is argued that the present-day climate lies close to the boundary of the two states and hence its blocking statistics are sensitive to climate perturbations. The result underscores the low confidence in GCM-based assessment of the future trend of blocking under a changing climate, while it also provides a theoretical basis for evaluating model biases and understanding trends in reanalysis data.
    Description: The main results of this paper emerged from a group project during Rossbypalooza, a student-led summer school at the University of Chicago in June 2018, with the theme of “Understanding climate through simple models.” The authors thank the participants of the summer school for their valuable feedback. Constructive criticisms of the two anonymous reviewers greatly improved the quality of the manuscript. The work is supported by NSF Grants AGS1563307 and AGS1810964
    Keywords: Blocking ; Nonlinear dynamics ; Planetary waves ; Potential vorticity ; Wave breaking ; Climate variability
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  • 13
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(7), (2019): 1973-1994, doi: 10.1175/JPO-D-18-0194.1.
    Description: Using 18 days of field observations, we investigate the diurnal (D1) frequency wave dynamics on the Tasmanian eastern continental shelf. At this latitude, the D1 frequency is subinertial and separable from the highly energetic near-inertial motion. We use a linear coastal-trapped wave (CTW) solution with the observed background current, stratification, and shelf bathymetry to determine the modal structure of the first three resonant CTWs. We associate the observed D1 velocity with a superimposed mode-zero and mode-one CTW, with mode one dominating mode zero. Both the observed and mode-one D1 velocity was intensified near the thermocline, with stronger velocities occurring when the thermocline stratification was stronger and/or the thermocline was deeper (up to the shelfbreak depth). The CTW modal structure and amplitude varied with the background stratification and alongshore current, with no spring–neap relationship evident for the observed 18 days. Within the surface and bottom Ekman layers on the shelf, the observed velocity phase changed in the cross-shelf and/or vertical directions, inconsistent with an alongshore propagating CTW. In the near-surface and near-bottom regions, the linear CTW solution also did not match the observed velocity, particularly within the bottom Ekman layer. Boundary layer processes were likely causing this observed inconsistency with linear CTW theory. As linear CTW solutions have an idealized representation of boundary dynamics, they should be cautiously applied on the shelf.
    Description: An Australian Research Council Discovery Project (DP 140101322), and a UWA Research Collaboration Award funded this work. T. L. Schlosser acknowledges the support of an Australian Government Research Training Program (RTP) Scholarship. We thank the crew, volunteers and scientists who aided in the field data collection aboard the R/V Revelle, which was funded by the National Science Foundation (OCE-1129763). The continental slope moorings, T4 (M32) and T3 (M44), were also funded by the National Science Foundation (OCE-1129763) and were conceived, planned, and executed by Matthew Alford, Jennifer Mackinnon, Jonathan Nash, Harper Simmons, and Gunnar Voet. We also thank Harper Simmons for the combined R/V Revelle multibeam and Geoscience Australia bathymetry used in this study. We thank the two anonymous reviewers whose comments improved this work.
    Description: 2020-01-16
    Keywords: Australia ; Continental shelf/slope ; Boundary currents ; Dynamics ; Waves, oceanic
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  • 14
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Semper, S., Vage, K., Pickart, R. S., Valdimarsson, H., Torres, D. J., & Jonsson, S. The emergence of the North Icelandic Jet and its evolution from northeast Iceland to Denmark Strait. Journal of Physical Oceanography, 49(10), (2019): 2499-2521, doi:10.1175/JPO-D-19-0088.1.
    Description: The North Icelandic Jet (NIJ) is an important source of dense water to the overflow plume passing through Denmark Strait. The properties, structure, and transport of the NIJ are investigated for the first time along its entire pathway following the continental slope north of Iceland, using 13 hydrographic/velocity surveys of high spatial resolution conducted between 2004 and 2018. The comprehensive dataset reveals that the current originates northeast of Iceland and increases in volume transport by roughly 0.4 Sv (1 Sv ≡ 106 m3 s−1) per 100 km until 300 km upstream of Denmark Strait, at which point the highest transport is reached. The bulk of the NIJ transport is confined to a small area in Θ–S space centered near −0.29° ± 0.16°C in Conservative Temperature and 35.075 ± 0.006 g kg−1 in Absolute Salinity. While the hydrographic properties of this transport mode are not significantly modified along the NIJ’s pathway, the transport estimates vary considerably between and within the surveys. Neither a clear seasonal signal nor a consistent link to atmospheric forcing was found, but barotropic and/or baroclinic instability is likely active in the current. The NIJ displays a double-core structure in roughly 50% of the occupations, with the two cores centered at the 600- and 800-m isobaths, respectively. The transport of overflow water 300 km upstream of Denmark Strait exceeds 1.8 ± 0.3 Sv, which is substantially larger than estimates from a year-long mooring array and hydrographic/velocity surveys closer to the strait, where the NIJ merges with the separated East Greenland Current. This implies a more substantial contribution of the NIJ to the Denmark Strait overflow plume than previously envisaged.
    Description: Six different research vessels were involved in the collection of the data used in this study: RRS James Clark Ross, R/V Knorr, R/V Bjarni Sæmundsson, R/V Håkon Mosby, NRV Alliance, and R/V Kristine Bonnevie. We thank the captain and crew of each of these vessels for their hard work as well as the many watch standers who have sailed on the cruises and helped collect the measurements. We also thank Frank Bahr for processing the VMADCP data collected on NRV Alliance and Magnús Danielsen for the processing of the hydrographic data collected on R/V Bjarni Sæmundsson. We acknowledge Leah Trafford McRaven for assistance with Fig. 1 and two anonymous reviewers for their helpful comments, which improved the manuscript. Funding for the project was provided by the Bergen Research Foundation Grant BFS2016REK01 (K. Våge and S. Semper), the Norwegian Research Council under Grant Agreement 231647 (K. Våge), and the U.S. National Science Foundation Grants OCE-1259618 and OCE-1756361 (R. S. Pickart and D. J. Torres), as well as OCE-1558742 (R. S. Pickart). The dataset is available on PANGAEA under https://doi.pangaea.de/10.1594/PANGAEA.903535.
    Keywords: Ocean ; Continental shelf/slope ; Ocean circulation ; Transport ; Intermediate waters ; In situ oceanic observations
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  • 15
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(13), (2019): 3883-3898, doi:10.1175/JCLI-D-18-0735.1.
    Description: While it has generally been understood that the production of Labrador Sea Water (LSW) impacts the Atlantic meridional overturning circulation (MOC), this relationship has not been explored extensively or validated against observations. To explore this relationship, a suite of global ocean–sea ice models forced by the same interannually varying atmospheric dataset, varying in resolution from non-eddy-permitting to eddy-permitting (1°–1/4°), is analyzed to investigate the local and downstream relationships between LSW formation and the MOC on interannual to decadal time scales. While all models display a strong relationship between changes in the LSW volume and the MOC in the Labrador Sea, this relationship degrades considerably downstream of the Labrador Sea. In particular, there is no consistent pattern among the models in the North Atlantic subtropical basin over interannual to decadal time scales. Furthermore, the strong response of the MOC in the Labrador Sea to LSW volume changes in that basin may be biased by the overproduction of LSW in many models compared to observations. This analysis shows that changes in LSW volume in the Labrador Sea cannot be clearly and consistently linked to a coherent MOC response across latitudes over interannual to decadal time scales in ocean hindcast simulations of the last half century. Similarly, no coherent relationships are identified between the MOC and the Labrador Sea mixed layer depth or the density of newly formed LSW across latitudes or across models over interannual to decadal time scales.
    Description: FL and MSL are thankful for the financial support from the National Science Foundation (NSF) Physical Oceanography Program (NSF-OCE-12-59102, NSF-OCE-12-59103). The NCAR contribution was supported by the National Oceanic and Atmospheric Administration (NOAA) Climate Program Office (CPO) under Climate Variability and Predictability Program (CVP) Grant NA13OAR4310138 and by the NSF Collaborative Research EaSM2 Grant OCE-1243015. NCAR is sponsored by the NSF. NPH is supported by NERC programs U.K. OSNAP (NE/K010875) and ACSIS (National Capability, NE/N018044/1). Y-OK is supported by NOAA CPO CVP (NA17OAR4310111) and NSF EaSM2 grant (OCE-1242989). AR is supported by NASA-ROSES Modeling, Analysis and Prediction 2016 NNX16AC93G-MAP. RZ is supported by NOAA/OAR. Argo data were collected and made freely available by the International Argo Program and the national programs that contribute to it (http://www.argo.ucsd.edu, http://argo.jcommops.org). The Argo Program is part of the Global Ocean Observing System (http://doi.org/10.17882/42182). Data from the RAPID-MOCHA-WBTS array funded by NERC, NSF and NOAA are freely available from www.rapid.ac.uk/rapidmoc. We thank Stephen Griffies for providing access to the GFDL-MOM025 COREII simulation output and Matthew Harrison and Xiaoqin Yan for their comments on the manuscript. We also thank the anonymous reviewers for their valuable comments.
    Description: 2020-06-11
    Keywords: North Atlantic Ocean ; Deep convection ; Meridional overturning circulation ; Model comparison
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  • 16
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(9), (2019): 2237-2254, doi: 10.1175/JPO-D-18-0181.1.
    Description: A cluster of 45 drifters deployed in the Bay of Bengal is tracked for a period of four months. Pair dispersion statistics, from observed drifter trajectories and simulated trajectories based on surface geostrophic velocity, are analyzed as a function of drifter separation and time. Pair dispersion suggests nonlocal dynamics at submesoscales of 1–20 km, likely controlled by the energetic mesoscale eddies present during the observations. Second-order velocity structure functions and their Helmholtz decomposition, however, suggest local dispersion and divergent horizontal flow at scales below 20 km. This inconsistency cannot be explained by inertial oscillations alone, as has been reported in recent studies, and is likely related to other nondispersive processes that impact structure functions but do not enter pair dispersion statistics. At scales comparable to the deformation radius LD, which is approximately 60 km, we find dynamics in agreement with Richardson’s law and observe local dispersion in both pair dispersion statistics and second-order velocity structure functions.
    Description: This research was supported by the Air Sea Interaction Regional Initiative (ASIRI) under ONR Grant N00014-13-1-0451 (SE and AM) and ONR Grant N00014-13-1-0477 (VH and LC). Additionally, AM and SE thank NSF (Grant OCE-I434788) and ONR (Grant N00014-16-1-2470) for support; VH and LC were further supported by ONR Grant N00014-15-1-2286 and NOAA GDP Grant NA10OAR4320156. We thank Joe LaCasce, Dhruv Balwada, and one anonymous reviewer for helpful comments and discussions that significantly improved this manuscript. The authors thank the captain and crew of the R/V Roger Revelle. The SVP-type drifters are part of the Global Drifter Program and supported by ONR Grant N00014-15-1-2286 and NOAA GDP Grant NA10OAR4320156 and are available under http://www.aoml.noaa.gov/phod/dac/. The Ssalto/Duacs altimeter products were produced and distributed by the Copernicus Marine and Environment Monitoring Service (CMEMS, http://www.marine.copernicus.eu).
    Keywords: Dispersion ; Fronts ; Mesoscale processes ; Subgrid-scale processes ; Trajectories ; Turbulence
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  • 17
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of the Atmospheric and Oceanic Technology 36(10), (2019): 1997-2014, doi: 10.1175/JTECH-D-19-0029.1.
    Description: While land-based high-frequency (HF) radars are the only instruments capable of resolving both the temporal and spatial variability of surface currents in the coastal ocean, recent high-resolution views suggest that the coastal ocean is more complex than presently deployed radar systems are able to reveal. This work uses a hybrid system, having elements of both phased arrays and direction finding radars, to improve the azimuthal resolution of HF radars. Data from two radars deployed along the U.S. East Coast and configured as 8-antenna grid arrays were used to evaluate potential direction finding and signal, or emitter, detection methods. Direction finding methods such as maximum likelihood estimation generally performed better than the well-known multiple signal classification (MUSIC) method given identical emitter detection methods. However, accurately estimating the number of emitters present in HF radar observations is a challenge. As MUSIC’s direction-of-arrival (DOA) function permits simple empirical tests that dramatically aid the detection process, MUSIC was found to be the superior method in this study. The 8-antenna arrays were able to provide more accurate estimates of MUSIC’s noise subspace than typical 3-antenna systems, eliminating the need for a series of empirical parameters to control MUSIC’s performance. Code developed for this research has been made available in an online repository.
    Description: This analysis was supported by NSF Grants OCE-1657896 and OCE-1736930 to Kirincich, OCE-1658475 to Emery and Washburn and OCE-1736709 to Flament. Flament is also supported by NOAA’s Integrated Ocean Observing System through Award NA11NOS0120039. The authors thank Lindsey Benjamin, Alma Castillo, Ken Constantine, Benedicte Dousset, Ian Fernandez, Mael Flament, Dave Harris, Garrett Hebert, Ben Hodges, Victoria Futch, Matt Guanci, and Philip Moravcik for assistance in building, deploying, and operating the radars.
    Description: 2020-04-11
    Keywords: Ocean ; Coastal flows ; Algorithms ; Radars/Radar observations ; Remote sensing
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  • 18
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 32(8), (2019): 2185-2205. doi:10.1175/JCLI-D-18-0538.1.
    Description: Much attention has been paid to the climatic impacts of changes in the Kuroshio Extension, instead of the Kuroshio in the East China Sea (ECS). This study, however, reveals the prominent influences of the lateral shift of the Kuroshio at interannual time scale in late spring [April–June (AMJ)] on the sea surface temperature (SST) and precipitation in summer around the ECS, based on high-resolution satellite observations and ERA-Interim. A persistent offshore displacement of the Kuroshio during AMJ can result in cold SST anomalies in the northern ECS and the Japan/East Sea until late summer, which correspondingly causes anomalous cooling of the lower troposphere. Consequently, the anomalous cold SST in the northern ECS acts as a key driver to robustly enhance the precipitation from the Yangtze River delta to Kyushu in early summer (May–August) and over the central ECS in late summer (July–September). In view of the moisture budget analysis, two different physical processes modulated by the lateral shift of the Kuroshio are identified to account for the distinct responses of precipitation in early and late summer, respectively. First, the anomalous cold SST in the northern ECS induced by the Kuroshio offshore shift is likely conducive to the earlier arrival of the mei-yu–baiu front at 30°–32°N and its subsequent slower northward movement, which may prolong the local rainy season, leading to the increased rain belt in early summer. Second, the persistent cold SST anomalies in late summer strengthen the near-surface baroclinicity and the associated strong atmospheric fronts embedded in the extratropical cyclones over the central ECS, which in turn enhances the local rainfall.
    Description: We appreciate three anonymous reviewers for their thoughtful and constructive comments. This work is supported by the National Key Research and Development Program of China (2016YFA0601804), the National Natural Science Foundation of China (NSFC) Projects (91858102, 41490643, 41490640, 41506009, U1606402) and the OUC–WHOI joint research program (21366).
    Description: 2019-10-01
    Keywords: Continental shelf/slope ; Atmosphere-ocean interaction ; Boundary currents ; Precipitation ; Interannual variability
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  • 19
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(4), (2019): 1035-1053, doi:10.1175/JPO-D-18-0136.1.
    Description: Ocean stratification and the vertical extent of the mixed layer influence the rate at which the ocean and atmosphere exchange properties. This process has direct impacts for anthropogenic heat and carbon uptake in the Southern Ocean. Submesoscale instabilities that evolve over space (1–10 km) and time (from hours to days) scales directly influence mixed layer variability and are ubiquitous in the Southern Ocean. Mixed layer eddies contribute to mixed layer restratification, while down-front winds, enhanced by strong synoptic storms, can erode stratification by a cross-frontal Ekman buoyancy flux. This study investigates the role of these submesoscale processes on the subseasonal and interannual variability of the mixed layer stratification using four years of high-resolution glider data in the Southern Ocean. An increase of stratification from winter to summer occurs due to a seasonal warming of the mixed layer. However, we observe transient decreases in stratification lasting from days to weeks, which can arrest the seasonal restratification by up to two months after surface heat flux becomes positive. This leads to interannual differences in the timing of seasonal restratification by up to 36 days. Parameterizing the Ekman buoyancy flux in a one-dimensional mixed layer model reduces the magnitude of stratification compared to when the model is run using heat and freshwater fluxes alone. Importantly, the reduced stratification occurs during the spring restratification period, thereby holding important implications for mixed layer dynamics in climate models as well as physical–biological coupling in the Southern Ocean.
    Description: MdP acknowledges numerous research visits to the Department of Marine Science, University of Gothenburg, and a visit to Woods Hole Oceanographic Institution, which greatly enhanced this work. We thank SANAP and the captain and crew of the S.A. Agulhas II for their assistance in the deployment and retrieval of the gliders. We acknowledge the work of SAMERC-STS for housing, managing, and piloting the gliders. SS was supported by NRF-SANAP Grant SNA14071475720 and a Wallenberg Academy Fellowship (WAF 2015.0186). Lastly, SS thanks the numerous technical assistance, advice, and IOP hosting provided by Geoff Shilling and Craig Lee of the Applied Physics Laboratory, University of Washington.
    Description: 2020-04-11
    Keywords: Atmosphere-ocean interaction ; Fronts ; Oceanic mixed layer ; In situ oceanic observations ; Interannual variability ; Seasonal cycle
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  • 20
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019): 1639-1649, doi: 10.1175/JPO-D-18-0154.1.
    Description: Using a recently developed asymptotic theory of internal solitary wave propagation over a sloping bottom in a rotating ocean, some new qualitative and quantitative features of this process are analyzed for internal waves in a two-layer ocean. The interplay between different singularities—terminal damping due to radiation and disappearing quadratic nonlinearity, and reaching an “internal beach” (e.g., zero lower-layer depth)—is discussed. Examples of the adiabatic evolution of a single solitary wave over a uniformly sloping bottom under realistic conditions are considered in more detail and compared with numerical solutions of the variable-coefficient, rotation-modified Korteweg–de Vries (rKdV) equation.
    Description: LAO is thankful to Yu. Stepanyants for broad discussions of mutual benefit. KRH was supported by Grant N00014-18-1-2542 from the Office of Naval Research.
    Description: 2020-06-13
    Keywords: Internal waves ; Differential equations ; Nonlinear models ; Ocean models
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  • 21
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society, 100(5), (2019): 897-908, doi:10.1175/BAMS-D-19-0130.1.
    Description: As states, cities, tribes, and private interests cope with climate damages and seek to increase preparedness and resilience, they will need to navigate myriad choices and options available to them. Making these choices in ways that identify pathways for climate action that support their development objectives will require constructive public dialogue, community participation, and flexible and ongoing access to science- and experience-based knowledge. In 2016, a Federal Advisory Committee (FAC) was convened to recommend how to conduct a sustained National Climate Assessment (NCA) to increase the relevance and usability of assessments for informing action. The FAC was disbanded in 2017, but members and additional experts reconvened to complete the report that is presented here. A key recommendation is establishing a new nonfederal “climate assessment consortium” to increase the role of state/local/tribal government and civil society in assessments. The expanded process would 1) focus on applied problems faced by practitioners, 2) organize sustained partnerships for collaborative learning across similar projects and case studies to identify effective tested practices, and 3) assess and improve knowledge-based methods for project implementation. Specific recommendations include evaluating climate models and data using user-defined metrics; improving benefit–cost assessment and supporting decision-making under uncertainty; and accelerating application of tools and methods such as citizen science, artificial intelligence, indicators, and geospatial analysis. The recommendations are the result of broad consultation and present an ambitious agenda for federal agencies, state/local/tribal jurisdictions, universities and the research sector, professional associations, nongovernmental and community-based organizations, and private-sector firms.
    Description: This report would not have been possible without the support and participation of numerous organizations and individuals. We thank New York State Governor Andrew M. Cuomo for announcing in his 2018 State of the State agenda that the IAC would be reconvened. The New York State Energy Research and Development Authority (Contract ID 123416), Columbia University’s Earth Institute, and the American Meteorological Society provided essential financial support and much more, including sage advice and moral support from John O’Leary, Shara Mohtadi, Steve Cohen, Alex Halliday, Peter deMenocal, Keith Seitter, Paul Higgins, and Bill Hooke. We thank the attendees of a workshop, generously funded by the Kresge Foundation in November of 2017, that laid a foundation for the idea to establish a civil-society-based assessment consortium. During the course of preparing the report, IAC members consulted with individuals too numerous to list here—state, local, and tribal officials; researchers; experts in nongovernmental and community-based organizations; and professionals in engineering, architecture, public health, adaptation, and other areas. We are so grateful for their time and expertise. We thank the members and staff of the National Academy of Sciences, Engineering, and Medicine’s Committee to Advise the U.S. Global Change Research Program for providing individual comments on preliminary recommendations during several discussions in open sessions of their meetings. The following individuals provided detailed comments on an earlier version of this report, which greatly sharpened our thinking and recommendations: John Balbus, Tom Dietz, Phil Duffy, Baruch Fischhoff, Brenda Hoppe, Melissa Kenney, Linda Mearns, Claudia Nierenberg, Kathleen Segerson, Soroosh Sorooshian, Chris Weaver, and Brian Zuckerman. Mary Black provided insightful copy editing of several versions of the report. We also thank four anonymous reviewers for their effort and care in critiquing and improving the report. It is the dedication, thoughtful feedback, expertise, care, and commitment of all these people and more that not only made this report possible, but allow us all to continue to support smart and insightful actions in a changing climate. We are grateful as authors and as global citizens. Author contributions: RM, SA, KB, MB, AC, JD, PF, KJ, AJ, KK, JK, ML, JM, RP, TR, LS, JS, JW, and DZ were members of the IAC and shared in researching, discussing, drafting, and approving the report. BA, JF, AG, LJ, SJ, PK, RK, AM, RM, JN, WS, JS, PT, GY, and RZ contributed to specific sections of the report.
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  • 22
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019):1463-1483, doi: 10.1175/JPO-D-18-0213.1.
    Description: A set of float trajectories, deployed at 1500- and 2500-m depths throughout the deep Gulf of Mexico from 2011 to 2015, are analyzed for mesoscale processes under the Loop Current (LC). In the eastern basin, December 2012–June 2014 had 〉40 floats per month, which was of sufficient density to allow capturing detailed flow patterns of deep eddies and topographic Rossby waves (TRWs), while two LC eddies formed and separated. A northward advance of the LC front compresses the lower water column and generates an anticyclone. For an extended LC, baroclinic instability eddies (of both signs) develop under the southward-propagating large-scale meanders of the upper-layer jet, resulting in a transfer of eddy kinetic energy (EKE) to the lower layer. The increase in lower-layer EKE occurs only over a few months during meander activity and LC eddy detachment events, a relatively short interval compared with the LC intrusion cycle. Deep EKE of these eddies is dispersed to the west and northwest through radiating TRWs, of which examples were found to the west of the LC. Because of this radiation of EKE, the lower layer of the eastern basin becomes relatively quiescent, particularly in the northeastern basin, when the LC is retracted and a LC eddy has departed. A mean west-to-east, anticyclone–cyclone dipole flow under a mean LC was directly comparable to similar results from a previous moored LC array and also showed connections to an anticlockwise boundary current in the southeastern basin.
    Description: The authors were supported by the Department of the Interior, Bureau of Ocean Energy Management (BOEM), Contract M08PC20043 to Leidos, Inc., Raleigh, NC. The authors also wish to acknowledge the enthusiastic support of Dr. Alexis Lugo-Fernández, the BOEM Contracting Officer’s Technical Representative, during the study into the Deep Circulation of the Gulf of Mexico, using Lagrangian Methods. Thanks go to the captains and crews of the R/V Pelican and B/O Justo Sierra, J. Malbrough (LUMCON), J. Singer (Leidos), J. Valdes (WHOI), B. Guest (WHOI), and the CANEK group (CICESE).
    Description: 2020-05-29
    Keywords: Bottom currents ; Eddies ; Instability ; Lagrangian circulation/transport ; Mesoscale processes ; Topographic effects
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  • 23
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 36(4), (2019): 733-744, doi:10.1175/JTECH-D-18-0050.1.
    Description: Sea-Bird Scientific SBE 41CP CTDs are used on autonomous floats in the global Argo ocean observing program to measure the temperature and salinity of the upper ocean. While profiling, the sensors are subject to dynamic errors as they profile through vertical gradients. Applying dynamic corrections to the temperature and conductivity data reduces these errors and improves sensor accuracy. A series of laboratory experiments conducted in a stratified tank are used to characterize dynamic errors and determine corrections. The corrections are adapted for Argo floats, and recommendations for future implementation are presented.
    Description: 2020-04-23
    Keywords: Data processing ; In situ oceanic observations ; Instrumentation/sensors ; oceanic ; Profilers, oceanic
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  • 24
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Weather Climate and Society 11(3), (2019):465-487, doi: 10.1175/WCAS-D-18-0134.1.
    Description: As states, cities, tribes, and private interests cope with climate damages and seek to increase preparedness and resilience, they will need to navigate myriad choices and options available to them. Making these choices in ways that identify pathways for climate action that support their development objectives will require constructive public dialogue, community participation, and flexible and ongoing access to science- and experience-based knowledge. In 2016, a Federal Advisory Committee (FAC) was convened to recommend how to conduct a sustained National Climate Assessment (NCA) to increase the relevance and usability of assessments for informing action. The FAC was disbanded in 2017, but members and additional experts reconvened to complete the report that is presented here. A key recommendation is establishing a new nonfederal “climate assessment consortium” to increase the role of state/local/tribal government and civil society in assessments. The expanded process would 1) focus on applied problems faced by practitioners, 2) organize sustained partnerships for collaborative learning across similar projects and case studies to identify effective tested practices, and 3) assess and improve knowledge-based methods for project implementation. Specific recommendations include evaluating climate models and data using user-defined metrics; improving benefit–cost assessment and supporting decision-making under uncertainty; and accelerating application of tools and methods such as citizen science, artificial intelligence, indicators, and geospatial analysis. The recommendations are the result of broad consultation and present an ambitious agenda for federal agencies, state/local/tribal jurisdictions, universities and the research sector, professional associations, nongovernmental and community-based organizations, and private-sector firms.
    Description: This report would not have been possible without the support and participation of numerous organizations and individuals. We thank New York State Governor Andrew M. Cuomo for announcing in his 2018 State of the State agenda that the IAC would be reconvened. The New York State Energy Research and Development Authority (Contract ID 123416), Columbia University’s Earth Institute, and the American Meteorological Society provided essential financial support and much more, including sage advice and moral support from John O’Leary, Shara Mohtadi, Steve Cohen, Alex Halliday, Peter deMenocal, Keith Seitter, Paul Higgins, and Bill Hooke. We thank the attendees of a workshop, generously funded by the Kresge Foundation in November of 2017, that laid a foundation for the idea to establish a civil-society-based assessment consortium. During the course of preparing the report, IAC members consulted with individuals too numerous to list here—state, local, and tribal officials; researchers; experts in nongovernmental and community-based organizations; and professionals in engineering, architecture, public health, adaptation, and other areas. We are so grateful for their time and expertise. We thank the members and staff of the National Academy of Sciences, Engineering, and Medicine’s Committee to Advise the U.S. Global Change Research Program for providing individual comments on preliminary recommendations during several discussions in open sessions of their meetings. The following individuals provided detailed comments on an earlier version of this report, which greatly sharpened our thinking and recommendations: John Balbus, Tom Dietz, Phil Duffy, Baruch Fischhoff, Brenda Hoppe, Melissa Kenney, Linda Mearns, Claudia Nierenberg, Kathleen Segerson, Soroosh Sorooshian, Chris Weaver, and Brian Zuckerman. Mary Black provided insightful copy editing of several versions of the report. We also thank four anonymous reviewers for their effort and care in critiquing and improving the report. It is the dedication, thoughtful feedback, expertise, care, and commitment of all these people and more that not only made this report possible, but allow us all to continue to support smart and insightful actions in a changing climate. We are grateful as authors and as global citizens. Author contributions: RM, SA, KB, MB, AC, JD, PF, KJ, AJ, KK, JK, ML, JM, RP, TR, LS, JS, JW, and DZ were members of the IAC and shared in researching, discussing, drafting, and approving the report. BA, JF, AG, LJ, SJ, PK, RK, AM, RM, JN, WS, JS, PT, GY, and RZ contributed to specific sections of the report.
    Description: 2020-05-21
    Keywords: North America ; Climate prediction ; Planning ; Policy ; Risk assessment ; Societal impacts
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  • 25
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019):1619-1637, doi:10.1175/JPO-D-18-0175.1.
    Description: Although the hydrodynamics of river meanders are well studied, the influence of curvature on flow in estuaries, with alternating tidal flow and varying water levels and salinity gradients, is less well understood. This paper describes a field study on curvature effects in a narrow salt-marsh creek with sharp bends. The key observations, obtained during times of negligible stratification, are 1) distinct differences between secondary flow during ebb and flood, with helical circulation as in rivers during ebb and a reversed circulation during flood, and 2) maximum (ebb and flood) streamwise velocities near the inside of the bend, unlike typical river bend flow. The streamwise velocity structure is explained by the lack of a distinct point bar and the relatively deep cross section in the estuary, which means that curvature-induced inward momentum redistribution is not overcome by outward redistribution by frictional and topographic effects. Through differential advection of the along-estuary salinity gradient, the laterally sheared streamwise velocity generates lateral salinity differences, with the saltiest water near the inside during flood. The resulting lateral baroclinic pressure gradient force enhances the standard helical circulation during ebb but counteracts it during flood. This first leads to a reversed secondary circulation during flood in the outer part of the cross section, which triggers a positive feedback mechanism by bringing slower-moving water from the outside inward along the surface. This leads to a reversal of the vertical shear in the streamwise flow, and therefore in the centrifugal force, which further enhances the reversed secondary circulation.
    Description: This project was funded by NSF Grant OCE-1634490. During this work W.M. Kranenburg was supported as USGS Postdoctoral Scholar at Woods Hole Oceanographic Institution. A.M.P. Garcia was supported by the Michael J. Kowalski Fellowship in Ocean Science and Engineering (AMPG), and the Diversity Fellowship of the MIT Office of the Dean of Graduate Education (AMPG). The authors thank Jay Sisson for the technical support and Peter Traykovski for providing the bathymetric data. Also, the suggestions for improvement by Dr. K. Blanckaert and an anonymous reviewer are thankfully acknowledged.
    Keywords: Estuaries ; Advection ; Baroclinic flows ; Barotropic flows
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 100(5), (2019): 909-912, doi: 10.1175/BAMS-D-18-0319.1.
    Description: The open availability and wide accessibility of digital scientific resources, such as articles and datasets, is becoming the norm for twenty-first-century science. Geoscience researchers are now being asked by funding agencies and scientific publishers to archive and cite data to support open access but often struggle to understand, interpret, and fulfill these requirements. To fulfill the promise of new open data initiatives, 1) scientific resources (e.g., data and software) must be collected and documented properly; 2) repository services, including preservation and storage capabilities, must be maintained, supported, and improved over time; and 3) governance institutions must be established. These issues were discussed in the Geoscience Digital Data Resource and Repository Service (GeoDaRRS) workshop,1 held in August 2018, at NCAR. The workshop brought together more than 60 geoscience researchers, technology experts, scientific publishers, funders, and data repository personnel to discuss data management challenges and opportunities within the geosciences. This included exploring whether new services are needed to complement existing data facilities, particularly in the areas of 1) data management planning support resources and 2) repository services for geoscience researchers who have data that do not fit in any existing repository. More details on the workshop agenda and recommendations are available in the final workshop report (Mayernik et al. 2018).
    Description: The National Science Foundation (NSF) provided the funding support for this workshop. We also thank Cecilia Banner and Elizabeth Faircloth of NCAR for administrative and logistical support.
    Description: 2020-06-04
    Repository Name: Woods Hole Open Access Server
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  • 27
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 49(6), (2019): 1561-1575, doi:10.1175/JPO-D-19-0002.1.
    Description: Within the pycnocline, where diapycnal mixing is suppressed, both the vertical movement (uplift) of isopycnal surfaces and upward motion along sloping isopycnals supply nutrients to the euphotic layer, but the relative importance of each of these mechanisms is unknown. We present a method for decomposing vertical velocity w into two components in a Lagrangian frame: vertical velocity along sloping isopycnal surfaces and the adiabatic vertical velocity of isopycnal surfaces . We show that , where is the isopycnal slope and is the geometric aspect ratio of the flow, and that accounts for 10%–25% of the total vertical velocity w for isopycnal slopes representative of the midlatitude pycnocline. We perform the decomposition of w in a process study model of a midlatitude eddying flow field generated with a range of isopycnal slopes. A spectral decomposition of the velocity components shows that while is the largest contributor to vertical velocity, is of comparable magnitude at horizontal scales less than about 10 km, that is, at submesoscales. Increasing the horizontal grid resolution of models is known to increase vertical velocity; this increase is disproportionately due to better resolution of , as is shown here by comparing 1- and 4-km resolution model runs. Along-isopycnal vertical transport can be an important contributor to the vertical flux of tracers, including oxygen, nutrients, and chlorophyll, although we find weak covariance between vertical velocity and nutrient anomaly in our model.
    Description: MAF was supported by a National Defense Science and Engineering Graduate Fellowship and AM by NSF OCE-I434788. The authors thank Glenn Flierl and Ruth Curry for helpful conversations, and three anonymous reviewers for comments that improved the manuscript.
    Description: 2020-06-11
    Keywords: Baroclinic flows ; Mesoscale processes ; Small scale processes ; Subgrid-scale processes ; Vertical motion
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  • 28
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2019. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 36(9), (2019): 1789-1812, doi:10.1175/JTECH-D-18-0223.1.
    Description: Temporal vertical eddy viscosity coefficient (VEVC) in an Ekman layer model is estimated using an adjoint method. Twin experiments are carried out to investigate the influences of several factors on inversion results, and the conclusions of twin experiments are 1) the adjoint method is a capable method to estimate different kinds of temporal distributions of VEVCs; 2) the gradient descent algorithm is better than CONMIN and L-BFGS for the present problem, although the posterior two algorithms perform better on convergence efficiency; 3) inversion results are sensitive to initial guesses; 4) the model is applicable to different wind conditions; 5) the inversion result with thick boundary layer depth (BLD) is slightly better than thin BLD; 6) inversion results are more sensitive to observations in upper layers than those in lower layers; 7) inversion results are still acceptable when data noise exists, indicating the method can sustain noise to a certain degree; 8) a regularization method is proved to be useful to improve the results for present problem; and 9) the present method can tolerate the existence of balance errors due to the imperfection of governing equations. The methodology is further validated in practical experiments where Ekman currents are derived from Bermuda Testbed Mooring data and assimilated. Modeled Ekman currents coincide well with observed ones, especially for upper layers. The results demonstrate that the assumptions of depth dependence and time dependence are equally important for VEVCs. The feasibility of the typical Ekman model, the imperfection of Ekman balance equations, and the deficiencies of the present method are discussed. This method provides a potential way to realize the time variations of VEVCs in ocean models.
    Description: The authors thank the seven reviewers for the constructive suggestions which have greatly improved the manuscript. Financial support is provided by the National Key Research and Development Plan of China (Grants 2017YFA0604100 and 2017YFC1404000), the National Natural Science Foundation of China (Grants 41876086 and 41806012), Scientific Research Fund of the Second Institute of Oceanography, MNR (Grant JG1819), and the Fundamental Research Funds for the Central Universities of China. Jicai thanks the support of China Scholarship Council for the visiting research in WHOI, and he also thanks the host of WHOI. BTM data are provided by Ocean Physics Laboratory, University of California, Santa Barbara (http://opl.ucsb.edu).
    Description: 2020-03-10
    Keywords: Data assimilation ; Parameterization
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    Publication Date: 2019-01-01
    Description: We describe the historical evolution of the conceptualization, formulation, quantification, application, and utilization of “radiative forcing” (RF) of Earth’s climate. Basic theories of shortwave and longwave radiation were developed through the nineteenth and twentieth centuries and established the analytical framework for defining and quantifying the perturbations to Earth’s radiative energy balance by natural and anthropogenic influences. The insight that Earth’s climate could be radiatively forced by changes in carbon dioxide, first introduced in the nineteenth century, gained empirical support with sustained observations of the atmospheric concentrations of the gas beginning in 1957. Advances in laboratory and field measurements, theory, instrumentation, computational technology, data, and analysis of well-mixed greenhouse gases and the global climate system through the twentieth century enabled the development and formalism of RF; this allowed RF to be related to changes in global-mean surface temperature with the aid of increasingly sophisticated models. This in turn led to RF becoming firmly established as a principal concept in climate science by 1990. The linkage with surface temperature has proven to be the most important application of the RF concept, enabling a simple metric to evaluate the relative climate impacts of different agents. The late 1970s and 1980s saw accelerated developments in quantification, including the first assessment of the effect of the forcing due to the doubling of carbon dioxide on climate (the “Charney” report). The concept was subsequently extended to a wide variety of agents beyond well-mixed greenhouse gases (WMGHGs; carbon dioxide, methane, nitrous oxide, and halocarbons) to short-lived species such as ozone. The WMO and IPCC international assessments began the important sequence of periodic evaluations and quantifications of the forcings by natural (solar irradiance changes and stratospheric aerosols resulting from volcanic eruptions) and a growing set of anthropogenic agents (WMGHGs, ozone, aerosols, land surface changes, contrails). From the 1990s to the present, knowledge and scientific confidence in the radiative agents acting on the climate system have proliferated. The conceptual basis of RF has also evolved as both our understanding of the way radiative forcing drives climate change and the diversity of the forcing mechanisms have grown. This has led to the current situation where “effective radiative forcing” (ERF) is regarded as the preferred practical definition of radiative forcing in order to better capture the link between forcing and global-mean surface temperature change. The use of ERF, however, comes with its own attendant issues, including challenges in its diagnosis from climate models, its applications to small forcings, and blurring of the distinction between rapid climate adjustments (fast responses) and climate feedbacks; this will necessitate further elaboration of its utility in the future. Global climate model simulations of radiative perturbations by various agents have established how the forcings affect other climate variables besides temperature (e.g., precipitation). The forcing–response linkage as simulated by models, including the diversity in the spatial distribution of forcings by the different agents, has provided a practical demonstration of the effectiveness of agents in perturbing the radiative energy balance and causing climate changes. The significant advances over the past half century have established, with very high confidence, that the global-mean ERF due to human activity since preindustrial times is positive (the 2013 IPCC assessment gives a best estimate of 2.3 W m−2, with a range from 1.1 to 3.3 W m−2; 90% confidence interval). Further, except in the immediate aftermath of climatically significant volcanic eruptions, the net anthropogenic forcing dominates over natural radiative forcing mechanisms. Nevertheless, the substantial remaining uncertainty in the net anthropogenic ERF leads to large uncertainties in estimates of climate sensitivity from observations and in predicting future climate impacts. The uncertainty in the ERF arises principally from the incorporation of the rapid climate adjustments in the formulation, the well-recognized difficulties in characterizing the preindustrial state of the atmosphere, and the incomplete knowledge of the interactions of aerosols with clouds. This uncertainty impairs the quantitative evaluation of climate adaptation and mitigation pathways in the future. A grand challenge in Earth system science lies in continuing to sustain the relatively simple essence of the radiative forcing concept in a form similar to that originally devised, and at the same time improving the quantification of the forcing. This, in turn, demands an accurate, yet increasingly complex and comprehensive, accounting of the relevant processes in the climate system.
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    Publication Date: 2019-01-01
    Description: Today’s global Earth system models began as simple regional models of tropospheric weather systems. Over the past century, the physical realism of the models has steadily increased, while the scope of the models has broadened to include the global troposphere and stratosphere, the ocean, the vegetated land surface, and terrestrial ice sheets. This chapter gives an approximately chronological account of the many and profound conceptual and technological advances that made today’s models possible. For brevity, we omit any discussion of the roles of chemistry and biogeochemistry, and terrestrial ice sheets.
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    Publication Date: 2019-01-01
    Description: This chapter reviews the history of the discovery of cloud nuclei and their impacts on cloud microphysics and the climate system. Pioneers including John Aitken, Sir John Mason, Hilding Köhler, Christian Junge, Sean Twomey, and Kenneth Whitby laid the foundations of the field. Through their contributions and those of many others, rapid progress has been made in the last 100 years in understanding the sources, evolution, and composition of the atmospheric aerosol, the interactions of particles with atmospheric water vapor, and cloud microphysical processes. Major breakthroughs in measurement capabilities and in theoretical understanding have elucidated the characteristics of cloud condensation nuclei and ice nucleating particles and the role these play in shaping cloud microphysical properties and the formation of precipitation. Despite these advances, not all their impacts on cloud formation and evolution have been resolved. The resulting radiative forcing on the climate system due to aerosol–cloud interactions remains an unacceptably large uncertainty in future climate projections. Process-level understanding of aerosol–cloud interactions remains insufficient to support technological mitigation strategies such as intentional weather modification or geoengineering to accelerating Earth-system-wide changes in temperature and weather patterns.
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    Publication Date: 2019-01-01
    Description: Over the past 100 years, the collaborative effort of the international science community, including government weather services and the media, along with the associated proliferation of environmental observations, improved scientific understanding, and growth of technology, has radically transformed weather forecasting into an effective global and regional environmental prediction capability. This chapter traces the evolution of forecasting, starting in 1919 [when the American Meteorological Society (AMS) was founded], over four eras separated by breakpoints at 1939, 1956, and 1985. The current state of forecasting could not have been achieved without essential collaboration within and among countries in pursuing the common weather and Earth-system prediction challenge. AMS itself has had a strong role in enabling this international collaboration.
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    Publication Date: 2019-01-01
    Description: The year 1919 was important in meteorology, not only because it was the year that the American Meteorological Society was founded, but also for two other reasons. One of the foundational papers in extratropical cyclone structure by Jakob Bjerknes was published in 1919, leading to what is now known as the Norwegian cyclone model. Also that year, a series of meetings was held that led to the formation of organizations that promoted the international collaboration and scientific exchange required for extratropical cyclone research, which by necessity involves spatial scales spanning national borders. This chapter describes the history of scientific inquiry into the structure, evolution, and dynamics of extratropical cyclones, their constituent fronts, and their attendant jet streams and storm tracks. We refer to these phenomena collectively as the centerpiece of meteorology because of their central role in fostering meteorological research during this century. This extremely productive period in extratropical cyclone research has been possible because of 1) the need to address practical challenges of poor forecasts that had large socioeconomic consequences, 2) the intermingling of theory, observations, and diagnosis (including dynamical modeling) to provide improved physical understanding and conceptual models, and 3) strong international cooperation. Conceptual frameworks for cyclones arise from a desire to classify and understand cyclones; they include the Norwegian cyclone model and its sister the Shapiro–Keyser cyclone model. The challenge of understanding the dynamics of cyclones led to such theoretical frameworks as quasigeostrophy, baroclinic instability, semigeostrophy, and frontogenesis. The challenge of predicting explosive extratropical cyclones in particular led to new theoretical developments such as potential-vorticity thinking and downstream development. Deeper appreciation of the limits of predictability has resulted from an evolution from determinism to chaos. Last, observational insights led to detailed cyclone and frontal structure, storm tracks, and rainbands.
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    Publication Date: 2019-01-01
    Description: Mountains significantly influence weather and climate on Earth, including disturbed surface winds; altered distribution of precipitation; gravity waves reaching the upper atmosphere; and modified global patterns of storms, fronts, jet streams, and climate. All of these impacts arise because Earth’s mountains penetrate deeply into the atmosphere. This penetration can be quantified by comparing mountain heights to several atmospheric reference heights such as density scale height, water vapor scale height, airflow blocking height, and the height of natural atmospheric layers. The geometry of Earth’s terrain can be analyzed quantitatively using statistical, matrix, and spectral methods. In this review, we summarize how our understanding of orographic effects has progressed over 100 years using the equations for atmospheric dynamics and thermodynamics, numerical modeling, and many clever in situ and remote sensing methods. We explore how mountains disturb the surface winds on our planet, including mountaintop winds, severe downslope winds, barrier jets, gap jets, wakes, thermally generated winds, and cold pools. We consider the variety of physical mechanisms by which mountains modify precipitation patterns in different climate zones. We discuss the vertical propagation of mountain waves through the troposphere into the stratosphere, mesosphere, and thermosphere. Finally, we look at how mountains distort the global-scale westerly winds that circle the poles and how varying ice sheets and mountain uplift and erosion over geologic time may have contributed to climate change.
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    Publication Date: 2019-01-01
    Description: The stratosphere contains ~17% of Earth’s atmospheric mass, but its existence was unknown until 1902. In the following decades our knowledge grew gradually as more observations of the stratosphere were made. In 1913 the ozone layer, which protects life from harmful ultraviolet radiation, was discovered. From ozone and water vapor observations, a first basic idea of a stratospheric general circulation was put forward. Since the 1950s our knowledge of the stratosphere and mesosphere has expanded rapidly, and the importance of this region in the climate system has become clear. With more observations, several new stratospheric phenomena have been discovered: the quasi-biennial oscillation, sudden stratospheric warmings, the Southern Hemisphere ozone hole, and surface weather impacts of stratospheric variability. None of these phenomena were anticipated by theory. Advances in theory have more often than not been prompted by unexplained phenomena seen in new stratospheric observations. From the 1960s onward, the importance of dynamical processes and the coupled stratosphere–troposphere circulation was realized. Since approximately 2000, better representations of the stratosphere—and even the mesosphere—have been included in climate and weather forecasting models. We now know that in order to produce accurate seasonal weather forecasts, and to predict long-term changes in climate and the future evolution of the ozone layer, models with a well-resolved stratosphere with realistic dynamics and chemistry are necessary.
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    Publication Date: 2019-01-01
    Description: Satellite meteorology is a relatively new branch of the atmospheric sciences. The field emerged in the late 1950s during the Cold War and built on the advances in rocketry after World War II. In less than 70 years, satellite observations have transformed the way scientists observe and study Earth. This paper discusses some of the key advances in our understanding of the energy and water cycles, weather forecasting, and atmospheric composition enabled by satellite observations. While progress truly has been an international achievement, in accord with a monograph observing the centennial of the American Meteorological Society, as well as limited space, the emphasis of this chapter is on the U.S. satellite effort.
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    Publication Date: 2019-01-01
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    Publication Date: 2019-01-01
    Description: This chapter outlines the development of our understanding of several examples of mesoscale atmospheric circulations that are tied directly to surface forcings, starting from thermally driven variations over the ocean and progressing inland to man-made variations in temperature and roughness, and ending with forced boundary layer circulations. Examples include atmospheric responses to 1) overocean temperature variations, 2) coastlines (sea breezes), 3) mesoscale regions of inland water (lake-effect storms), and 4) variations in land-based surface usage (urban land cover). This chapter provides brief summaries of the historical evolution of, and tools for, understanding such mesoscale atmospheric circulations and their importance to the field, as well as physical processes responsible for initiating and determining their evolution. Some avenues of future research we see as critical are provided. The American Meteorological Society (AMS) has played a direct and important role in fostering the development of understanding mesoscale surface-forced circulations. The significance of AMS journal publications and conferences on this and interrelated atmospheric, oceanic, and hydrological fields, as well as those by sister scientific organizations, are demonstrated through extensive relevant citations.
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    Publication Date: 2019-01-01
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    Publication Date: 2019-01-01
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    Publication Date: 2019-01-01
    Description: The history of over 100 years of observing the ocean is reviewed. The evolution of particular classes of ocean measurements (e.g., shipboard hydrography, moorings, and drifting floats) are summarized along with some of the discoveries and dynamical understanding they made possible. By the 1970s, isolated and “expedition” observational approaches were evolving into experimental campaigns that covered large ocean areas and addressed multiscale phenomena using diverse instrumental suites and associated modeling and analysis teams. The Mid-Ocean Dynamics Experiment (MODE) addressed mesoscale “eddies” and their interaction with larger-scale currents using new ocean modeling and experiment design techniques and a suite of developing observational methods. Following MODE, new instrument networks were established to study processes that dominated ocean behavior in different regions. The Tropical Ocean Global Atmosphere program gathered multiyear time series in the tropical Pacific to understand, and eventually predict, evolution of coupled ocean–atmosphere phenomena like El Niño–Southern Oscillation (ENSO). The World Ocean Circulation Experiment (WOCE) sought to quantify ocean transport throughout the global ocean using temperature, salinity, and other tracer measurements along with fewer direct velocity measurements with floats and moorings. Western and eastern boundary currents attracted comprehensive measurements, and various coastal regions, each with its unique scientific and societally important phenomena, became home to regional observing systems. Today, the trend toward networked observing arrays of many instrument types continues to be a productive way to understand and predict large-scale ocean phenomena.
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    Publication Date: 2019-01-01
    Description: In situ observation networks and reanalyses products of the state of the atmosphere and upper ocean show well-defined, large-scale patterns of coupled climate variability on time scales ranging from seasons to several decades. We summarize these phenomena and their physics, which have been revealed by analysis of observations, by experimentation with uncoupled and coupled atmosphere and ocean models with a hierarchy of complexity, and by theoretical developments. We start with a discussion of the seasonal cycle in the equatorial tropical Pacific and Atlantic Oceans, which are clearly affected by coupling between the atmosphere and the ocean. We then discuss the tropical phenomena that only exist because of the coupling between the atmosphere and the ocean: the Pacific and Atlantic meridional modes, the El Niño–Southern Oscillation (ENSO) in the Pacific, and a phenomenon analogous to ENSO in the Atlantic. For ENSO, we further discuss the sources of irregularity and asymmetry between warm and cold phases of ENSO, and the response of ENSO to forcing. Fundamental to variability on all time scales in the midlatitudes of the Northern Hemisphere are preferred patterns of uncoupled atmospheric variability that exist independent of any changes in the state of the ocean, land, or distribution of sea ice. These patterns include the North Atlantic Oscillation (NAO), the North Pacific Oscillation (NPO), and the Pacific–North American (PNA) pattern; they are most active in wintertime, with a temporal spectrum that is nearly white. Stochastic variability in the NPO, PNA, and NAO force the ocean on days to interannual times scales by way of turbulent heat exchange and Ekman transport, and on decadal and longer time scales by way of wind stress forcing. The PNA is partially responsible for the Pacific decadal oscillation; the NAO is responsible for an analogous phenomenon in the North Atlantic subpolar gyre. In models, stochastic forcing by the NAO also gives rise to variability in the strength of the Atlantic meridional overturning circulation (AMOC) that is partially responsible for multidecadal anomalies in the North Atlantic climate known as the Atlantic multidecadal oscillation (AMO); observations do not yet exist to adequately determine the physics of the AMO. We review the progress that has been made in the past 50 years in understanding each of these phenomena and the implications for short-term (seasonal-to-interannual) climate forecasts. We end with a brief discussion of advances of things that are on the horizon, under the rug, and over the rainbow.
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  • 43
    Publication Date: 2019-01-01
    Description: s The history of severe thunderstorm research and forecasting over the past century has been a remarkable story involving interactions between technological development of observational and modeling capabilities, research into physical processes, and the forecasting of phenomena with the goal of reducing loss of life and property. Perhaps more so than any other field of meteorology, the relationship between researchers and forecasters has been particularly close in the severe thunderstorm domain, with both groups depending on improved observational capabilities. The advances that have been made have depended on observing systems that did not exist 100 years ago, particularly radar and upper-air systems. They have allowed scientists to observe storm behavior and structure and the environmental setting in which storms occur. This has led to improved understanding of processes, which in turn has allowed forecasters to use those same observational systems to improve forecasts. Because of the relatively rare and small-scale nature of many severe thunderstorm events, severe thunderstorm researchers have developed mobile instrumentation capabilities that have allowed them to collect high-quality observations in the vicinity of storms. Since much of the world is subject to severe thunderstorm hazards, research has taken place around the world, with the local emphasis dependent on what threats are perceived in that area, subject to the availability of resources to study the threat. Frequently, the topics of interest depend upon a single event, or a small number of events, of a particular kind that aroused public or economic interests in that area. International cooperation has been an important contributor to collecting and disseminating knowledge. As the AMS turns 100, the range of research relating to severe thunderstorms is expanding. The time scale of forecasting or projecting is increasing, with work going on to study forecasts on the seasonal to subseasonal time scales, as well as addressing how climate change may influence severe thunderstorms. With its roots in studying weather that impacts the public, severe thunderstorm research now includes significant work from the social science community, some as standalone research and some in active collaborative efforts with physical scientists. In addition, the traditional emphases of the field continue to grow. Improved radar and numerical modeling capabilities allow meteorologists to see and model details that were unobservable and not understood a half century ago. The long tradition of collecting observations in the field has led to improved quality and quantity of observations, as well as the capability to collect them in locations that were previously inaccessible. Much of that work has been driven by the gaps in understanding identified by theoretical and operational practice.
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    Publication Date: 2019-01-01
    Description: Remarkable progress has occurred over the last 100 years in our understanding of atmospheric chemical composition, stratospheric and tropospheric chemistry, urban air pollution, acid rain, and the formation of airborne particles from gas-phase chemistry. Much of this progress was associated with the developing understanding of the formation and role of ozone and of the oxides of nitrogen, NO and NO2, in the stratosphere and troposphere. The chemistry of the stratosphere, emerging from the pioneering work of Chapman in 1931, was followed by the discovery of catalytic ozone cycles, ozone destruction by chlorofluorocarbons, and the polar ozone holes, work honored by the 1995 Nobel Prize in Chemistry awarded to Crutzen, Rowland, and Molina. Foundations for the modern understanding of tropospheric chemistry were laid in the 1950s and 1960s, stimulated by the eye-stinging smog in Los Angeles. The importance of the hydroxyl (OH) radical and its relationship to the oxides of nitrogen (NO and NO2) emerged. The chemical processes leading to acid rain were elucidated. The atmosphere contains an immense number of gas-phase organic compounds, a result of emissions from plants and animals, natural and anthropogenic combustion processes, emissions from oceans, and from the atmospheric oxidation of organics emitted into the atmosphere. Organic atmospheric particulate matter arises largely as gas-phase organic compounds undergo oxidation to yield low-volatility products that condense into the particle phase. A hundred years ago, quantitative theories of chemical reaction rates were nonexistent. Today, comprehensive computer codes are available for performing detailed calculations of chemical reaction rates and mechanisms for atmospheric reactions. Understanding the future role of atmospheric chemistry in climate change and, in turn, the impact of climate change on atmospheric chemistry, will be critical to developing effective policies to protect the planet.
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  • 45
    Publication Date: 2019-01-01
    Description: The human population on Earth has increased by a factor of 4.6 in the last 100 years and has become more centered in urban environments. This expansion and migration pattern has resulted in stresses on the environment. Meteorological applications have helped to understand and mitigate those stresses. This chapter describes several applications that enable the population to interact with the environment in more sustainable ways. The first topic treated is urbanization itself and the types of stresses exerted by population growth and its attendant growth in urban landscapes—buildings and pavement—and how they modify airflow and create a local climate. We describe environmental impacts of these changes and implications for the future. The growing population uses increasing amounts of energy. Traditional sources of energy have taxed the environment, but the increase in renewable energy has used the atmosphere and hydrosphere as its fuel. Utilizing these variable renewable resources requires meteorological information to operate electric systems efficiently and economically while providing reliable power and minimizing environmental impacts. The growing human population also pollutes the environment. Thus, understanding and modeling the transport and dispersion of atmospheric contaminants are important steps toward regulating the pollution and mitigating impacts. This chapter describes how weather information can help to make surface transportation more safe and efficient. It is explained how these applications naturally require transdisciplinary collaboration to address these challenges caused by the expanding population.
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    Electronic ISSN: 1943-3646
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  • 46
    Publication Date: 2019-01-01
    Description: Applied meteorology is an important and rapidly growing field. This chapter concludes the three-chapter series of this monograph describing how meteorological information can be used to serve society’s needs while at the same time advancing our understanding of the basics of the science. This chapter continues along the lines of Part II of this series by discussing ways that meteorological and climate information can help to improve the output of the agriculture and food-security sector. It also discusses how agriculture alters climate and its long-term implications. It finally pulls together several of the applications discussed by treating the food–energy–water nexus. The remaining topics of this chapter are those that are advancing rapidly with more opportunities for observation and needs for prediction. The study of space weather is advancing our understanding of how the barrage of particles from other planetary bodies in the solar system impacts Earth’s atmosphere. Our ability to predict wildland fires by coupling atmospheric and fire-behavior models is beginning to impact decision-support systems for firefighters. Last, we examine how artificial intelligence is changing the way we predict, emulate, and optimize our meteorological variables and its potential to amplify our capabilities. Many of these advances are directly due to the rapid increase in observational data and computer power. The applications reviewed in this series of chapters are not comprehensive, but they will whet the reader’s appetite for learning more about how meteorology can make a concrete impact on the world’s population by enhancing access to resources, preserving the environment, and feeding back into a better understanding how the pieces of the environmental system interact.
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  • 47
    Publication Date: 2019-01-01
    Description: Some of the advances of the past century in our understanding of the general circulation of the atmosphere are described, starting with a brief summary of some of the key developments from the first half of the twentieth century, but with a primary focus on the period beginning with the midcentury breakthrough in baroclinic instability and quasigeostrophic dynamics. In addition to baroclinic instability, topics touched upon include the following: stationary wave theory, the role played by the two-layer model, scaling arguments for the eddy heat flux, the subtlety of large-scale eddy momentum fluxes, the Eliassen–Palm flux and the transformed Eulerian mean formulation, the structure of storm tracks, and the controls on the Hadley cell.
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  • 48
    Publication Date: 2019-01-01
    Description: Over the last 100 years, boundary layer meteorology grew from the subject of mostly near-surface observations to a field encompassing diverse atmospheric boundary layers (ABLs) around the world. From the start, researchers drew from an ever-expanding set of disciplines—thermodynamics, soil and plant studies, fluid dynamics and turbulence, cloud microphysics, and aerosol studies. Research expanded upward to include the entire ABL in response to the need to know how particles and trace gases dispersed, and later how to represent the ABL in numerical models of weather and climate (starting in the 1970s–80s); taking advantage of the opportunities afforded by the development of large-eddy simulations (1970s), direct numerical simulations (1990s), and a host of instruments to sample the boundary layer in situ and remotely from the surface, the air, and space. Near-surface flux-profile relationships were developed rapidly between the 1940s and 1970s, when rapid progress shifted to the fair-weather convective boundary layer (CBL), though tropical CBL studies date back to the 1940s. In the 1980s, ABL research began to include the interaction of the ABL with the surface and clouds, the first ABL parameterization schemes emerged; and land surface and ocean surface model development blossomed. Research in subsequent decades has focused on more complex ABLs, often identified by shortcomings or uncertainties in weather and climate models, including the stable boundary layer, the Arctic boundary layer, cloudy boundary layers, and ABLs over heterogeneous surfaces (including cities). The paper closes with a brief summary, some lessons learned, and a look to the future.
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  • 49
    Publication Date: 2019-01-01
    Description: The development of the technologies of remote sensing of the ocean was initiated in the 1970s, while the ideas of observing the ocean from space were conceived in the late 1960s. The first global view from space revealed the expanse and complexity of the state of the ocean that had perplexed and inspired oceanographers ever since. This paper presents a glimpse of the vast progress made from ocean remote sensing in the past 50 years that has a profound impact on the ways we study the ocean in relation to weather and climate. The new view from space in conjunction with the deployment of an unprecedented amount of in situ observations of the ocean has led to a revolution in physical oceanography. The highlights of the achievement include the description and understanding of the global ocean circulation, the air–sea fluxes driving the coupled ocean–atmosphere system that is most prominently illustrated in the tropical oceans. The polar oceans are most sensitive to climate change with significant consequences, but owing to remoteness they were not accessible until the space age. Fundamental discoveries have been made on the evolution of the state of sea ice as well as the circulation of the ice-covered ocean. Many surprises emerged from the extraordinary accuracy and expanse of the space observations. Notable examples include the determination of the global mean sea level rise as well as the role of the deep ocean in tidal mixing and dissipation.
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  • 50
    Publication Date: 2019-06-01
    Print ISSN: 0003-0007
    Electronic ISSN: 1520-0477
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  • 51
    Publication Date: 2019-06-01
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  • 52
    Publication Date: 2019-06-01
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  • 53
    Publication Date: 2019-06-01
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  • 54
    Publication Date: 2019-06-01
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  • 55
    Publication Date: 2019-06-01
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  • 56
    Publication Date: 2019
    Description: 〈p〉The compatibility of free boronic acid building blocks in multicomponent reactions to readily create large libraries of diverse and complex small molecules was investigated. Traditionally, boronic acid synthesis is sequential, synthetically demanding, and time-consuming, which leads to high target synthesis times and low coverage of the boronic acid chemical space. We have performed the synthesis of large libraries of boronic acid derivatives based on multiple chemistries and building blocks using acoustic dispensing technology. The synthesis was performed on a nanomole scale with high synthesis success rates. The discovery of a protease inhibitor underscores the usefulness of the approach. Our acoustic dispensing–enabled chemistry paves the way to highly accelerated synthesis and miniaturized reaction scouting, allowing access to unprecedented boronic acid libraries.〈/p〉
    Electronic ISSN: 2375-2548
    Topics: Natural Sciences in General
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  • 57
    Publication Date: 2019
    Description: 〈p〉Humans are adept in simultaneously following multiple goals, but the neural mechanisms for maintaining specific goals and distinguishing them from other goals are incompletely understood. For short time scales, working memory studies suggest that multiple mental contents are maintained by theta-coupled reactivation, but evidence for similar mechanisms during complex behaviors such as goal-directed navigation is scarce. We examined intracranial electroencephalography recordings of epilepsy patients performing an object-location memory task in a virtual environment. We report that large-scale electrophysiological representations of objects that cue for specific goal locations are dynamically reactivated during goal-directed navigation. Reactivation of different cue representations occurred at stimulus-specific hippocampal theta phases. Locking to more distinct theta phases predicted better memory performance, identifying hippocampal theta phase coding as a mechanism for separating competing goals. Our findings suggest shared neural mechanisms between working memory and goal-directed navigation and provide new insights into the functions of the hippocampal theta rhythm.〈/p〉
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  • 58
    Publication Date: 2019
    Description: 〈p〉Voters may be unable to hold politicians to account if they lack basic information about their representatives’ performance. Civil society groups and international donors therefore advocate using voter information campaigns to improve democratic accountability. Yet, are these campaigns effective? Limited replication, measurement heterogeneity, and publication biases may undermine the reliability of published research. We implemented a new approach to cumulative learning, coordinating the design of seven randomized controlled trials to be fielded in six countries by independent research teams. Uncommon for multisite trials in the social sciences, we jointly preregistered a meta-analysis of results in advance of seeing the data. We find no evidence overall that typical, nonpartisan voter information campaigns shape voter behavior, although exploratory and subgroup analyses suggest conditions under which informational campaigns could be more effective. Such null estimated effects are too seldom published, yet they can be critical for scientific progress and cumulative, policy-relevant learning.〈/p〉
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  • 59
    Publication Date: 2019
    Description: 〈p〉The canonical view is that touch is signaled by fast-conducting, thickly myelinated afferents, whereas pain is signaled by slow-conducting, thinly myelinated ("fast" pain) or unmyelinated ("slow" pain) afferents. While other mammals have thickly myelinated afferents signaling pain (ultrafast nociceptors), these have not been demonstrated in humans. Here, we performed single-unit axonal recordings (microneurography) from cutaneous mechanoreceptive afferents in healthy participants. We identified A-fiber high-threshold mechanoreceptors (A-HTMRs) that were insensitive to gentle touch, encoded noxious skin indentations, and displayed conduction velocities similar to A-fiber low-threshold mechanoreceptors. Intraneural electrical stimulation of single ultrafast A-HTMRs evoked painful percepts. Testing in patients with selective deafferentation revealed impaired pain judgments to graded mechanical stimuli only when thickly myelinated fibers were absent. This function was preserved in patients with a loss-of-function mutation in mechanotransduction channel PIEZO2. These findings demonstrate that human mechanical pain does not require PIEZO2 and can be signaled by fast-conducting, thickly myelinated afferents.〈/p〉
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  • 60
    Publication Date: 2019
    Description: 〈p〉Mineralization is the most fundamental process in vertebrates. It is predominantly mediated by osteoblasts, which secrete mineral precursors, most likely through matrix vesicles (MVs). These vesicular structures are calcium and phosphate rich and contain organic material such as acidic proteins. However, it remains largely unknown how intracellular MVs are transported and secreted. Here, we use scanning electron-assisted dielectric microscopy and super-resolution microscopy for assessing live osteoblasts in mineralizing conditions at a nanolevel resolution. We found that the calcium-containing vesicles were multivesicular bodies containing MVs. They were transported via lysosome and secreted by exocytosis. Thus, we present proof that the lysosome transports amorphous calcium phosphate within mineralizing osteoblasts.〈/p〉
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  • 61
    Publication Date: 2019
    Description: 〈p〉Over 140 Mha of restoration commitments have been pledged across the global tropics, yet guidance is needed to identify those landscapes where implementation is likely to provide the greatest potential benefits and cost-effective outcomes. By overlaying seven recent, peer-reviewed spatial datasets as proxies for socioenvironmental benefits and feasibility of restoration, we identified restoration opportunities (areas with higher potential return of benefits and feasibility) in lowland tropical rainforest landscapes. We found restoration opportunities throughout the tropics. Areas scoring in the top 10% (i.e., restoration hotspots) are located largely within conservation hotspots (88%) and in countries committed to the Bonn Challenge (73%), a global effort to restore 350 Mha by 2030. However, restoration hotspots represented only a small portion (19.1%) of the Key Biodiversity Area network. Concentrating restoration investments in landscapes with high benefits and feasibility would maximize the potential to mitigate anthropogenic impacts and improve human well-being.〈/p〉
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  • 62
    Publication Date: 2019
    Description: 〈p〉In engineering, the "softness" of an object, as measured by an indenter, manifests as two measurable parameters: (i) indentation depth and (ii) contact area. For humans, softness is not well defined, although it is believed that perception depends on the same two parameters. Decoupling their relative contributions, however, has not been straightforward because most bulk—"off-the-shelf"—materials exhibit the same ratio between the indentation depth and contact area. Here, we decoupled indentation depth and contact area by fabricating elastomeric slabs with precise thicknesses and microstructured surfaces. Human subject experiments using two-alternative forced-choice and magnitude estimation tests showed that the indentation depth and contact area contributed independently to perceived softness. We found an explicit relationship between the perceived softness of an object and its geometric properties. Using this approach, it is possible to design objects for human interaction with a desired level of perceived softness.〈/p〉
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  • 63
    Publication Date: 2019
    Description: 〈p〉The electronic energy and dynamics of solvated electrons, the simplest yet elusive chemical species, is of interest in chemistry, physics, and biology. Here, we present the electron binding energy distributions of solvated electrons in liquid water, methanol, and ethanol accurately measured using extreme ultraviolet (EUV) photoelectron spectroscopy of liquids with a single-order high harmonic. The distributions are Gaussian in all cases. Using the EUV and UV photoelectron spectra of solvated electrons, we succeeded in retrieving sharp electron kinetic energy distributions from the spectra broadened and energy shifted by inelastic scattering in liquids, overcoming an obstacle in ultrafast UV photoelectron spectroscopy of liquids. The method is demonstrated for the benchmark systems of charge transfer to solvent reaction and ultrafast internal conversion of hydrated electron from the first excited state.〈/p〉
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  • 64
    Publication Date: 2019
    Description: 〈p〉Topological surface states (TSSs) in a topological insulator are expected to be able to produce a spin-orbit torque that can switch a neighboring ferromagnet. This effect may be absent if the ferromagnet is conductive because it can completely suppress the TSSs, but it should be present if the ferromagnet is insulating. This study reports TSS-induced switching in a bilayer consisting of a topological insulator Bi〈sub〉2〈/sub〉Se〈sub〉3〈/sub〉 and an insulating ferromagnet BaFe〈sub〉12〈/sub〉O〈sub〉19〈/sub〉. A charge current in Bi〈sub〉2〈/sub〉Se〈sub〉3〈/sub〉 can switch the magnetization in BaFe〈sub〉12〈/sub〉O〈sub〉19〈/sub〉 up and down. When the magnetization is switched by a field, a current in Bi〈sub〉2〈/sub〉Se〈sub〉3〈/sub〉 can reduce the switching field by ~4000 Oe. The switching efficiency at 3 K is 300 times higher than at room temperature; it is ~30 times higher than in Pt/BaFe〈sub〉12〈/sub〉O〈sub〉19〈/sub〉. These strong effects originate from the presence of more pronounced TSSs at low temperatures due to enhanced surface conductivity and reduced bulk conductivity.〈/p〉
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  • 65
    Publication Date: 2019
    Description: 〈p〉The in situ two-dimensional (2D) and 3D imaging of the chemical speciation of organic fossils is an unsolved problem in paleontology and cultural heritage. Here, we use x-ray Raman scattering (XRS)–based imaging at the carbon K-edge to form 2D and 3D images of the carbon chemistry in two exceptionally preserved specimens, a fossil plant dating back from the Carboniferous and an ancient insect entrapped in 53-million-year-old amber. The 2D XRS imaging of the plant fossil reveals a homogeneous chemical composition with micrometric "pockets" of preservation, likely inherited from its geological history. The 3D XRS imaging of the insect cuticle displays an exceptionally well preserved remaining chemical signature typical of polysaccharides such as chitin around a largely hollowed-out inclusion. Our results open up new perspectives for in situ chemical speciation imaging of fossilized organic materials, with the potential to enhance our understanding of organic specimens and their paleobiology.〈/p〉
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  • 66
    Publication Date: 2019
    Description: 〈p〉The regeneration of tooth enamel, the hardest biological tissue, remains a considerable challenge because its complicated and well-aligned apatite structure has not been duplicated artificially. We herein reveal that a rationally designed material composed of calcium phosphate ion clusters can be used to produce a precursor layer to induce the epitaxial crystal growth of enamel apatite, which mimics the biomineralization crystalline-amorphous frontier of hard tissue development in nature. After repair, the damaged enamel can be recovered completely because its hierarchical structure and mechanical properties are identical to those of natural enamel. The suggested phase transformation–based epitaxial growth follows a promising strategy for enamel regeneration and, more generally, for biomimetic reproduction of materials with complicated structure.〈/p〉
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  • 67
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    Publication Date: 2019
    Description: 〈sec〉〈st〉Electron energy bands of crystalline solids generically exhibit degeneracies called band-structure nodes. Here, we introduce non-Abelian topological charges that characterize line nodes inside the momentum space of〈/st〉〈p〉〈b〉-symmetric crystalline metals with weak spin-orbit coupling. We show that these are quaternion charges, similar to those describing disclinations in biaxial nematics. Starting from two-band considerations, we develop the complete many-band description of nodes in the presence of 〈/b〉 〈b〉and mirror symmetries, which allows us to investigate the topological stability of nodal chains in metals. The non-Abelian charges put strict constraints on the possible nodal line configurations. Our analysis goes beyond the standard approach to band topology, and implies the existence of 1D topological phases not present in existing classifications.〈/b〉〈/p〉〈/sec〉
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  • 68
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  • 69
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  • 72
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  • 73
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  • 74
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  • 75
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  • 76
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  • 77
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  • 78
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  • 79
    Publication Date: 2019
    Description: 〈p〉Investigating slow earthquake activity in subduction zones provides insight into the slip behavior of megathrusts, which can provide important clues about the rupture extent of future great earthquakes. Using the S-net ocean-bottom seismograph network along the Japan Trench, we mapped a detailed distribution of tectonic tremors, which coincided with very-low-frequency earthquakes and a slow slip event. Compiling these and other related observations, including repeating earthquakes and earthquake swarms, we found that the slow earthquake distribution is complementary to the Tohoku-Oki earthquake rupture. We used our observations to divide the megathrust in the Japan Trench into three along-strike segments characterized by different slip behaviors. We found that the rupture of the Tohoku-Oki earthquake, which nucleated in the central segment, was terminated by the two adjacent segments.〈/p〉
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  • 80
    Publication Date: 2019
    Description: 〈p〉Stimuli-responsive materials activated by biological signals play an increasingly important role in biotechnology applications. We exploit the programmability of CRISPR-associated nucleases to actuate hydrogels containing DNA as a structural element or as an anchor for pendant groups. After activation by guide RNA–defined inputs, Cas12a cleaves DNA in the gels, thereby converting biological information into changes in material properties. We report four applications: (i) branched poly(ethylene glycol) hydrogels releasing DNA-anchored compounds, (ii) degradable polyacrylamide-DNA hydrogels encapsulating nanoparticles and live cells, (iii) conductive carbon-black–DNA hydrogels acting as degradable electrical fuses, and (iv) a polyacrylamide-DNA hydrogel operating as a fluidic valve with an electrical readout for remote signaling. These materials allow for a range of in vitro applications in tissue engineering, bioelectronics, and diagnostics.〈/p〉
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  • 82
    Publication Date: 2019
    Description: 〈p〉Understanding genomic variation and population structure of 〈i〉Plasmodium falciparum〈/i〉 across Africa is necessary to sustain progress toward malaria elimination. Genome clustering of 2263 〈i〉P. falciparum〈/i〉 isolates from 24 malaria-endemic settings in 15 African countries identified major western, central, and eastern ancestries, plus a highly divergent Ethiopian population. Ancestry aligned to these regional blocs, overlapping with both the parasite’s origin and with historical human migration. The parasite populations are interbred and shared genomic haplotypes, especially across drug resistance loci, which showed the strongest recent identity-by-descent between populations. A recent signature of selection on chromosome 12 with candidate resistance loci against artemisinin derivatives was evident in Ghana and Malawi. Such selection and the emerging substructure may affect treatment-based intervention strategies against 〈i〉P. falciparum〈/i〉 malaria.〈/p〉
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  • 85
    Publication Date: 2019
    Description: 〈p〉In insects, rapidly evolving primary sex-determining signals are transduced by a conserved regulatory module controlling sexual differentiation. In the agricultural pest 〈i〉Ceratitis capitata〈/i〉 (Mediterranean fruit fly, Medfly) we identified a Y-linked gene, 〈i〉Maleness-on the-Y〈/i〉 (〈i〉MoY〈/i〉), encoding a small protein that is necessary and sufficient for male development. Silencing or disruption of 〈i〉MoY〈/i〉 in XY embryos causes feminization whereas overexpression of 〈i〉MoY〈/i〉 in XX embryos induces masculinization. Crosses between transformed XY females and XX males give rise to males and females, indicating that a Y chromosome can be transmitted by XY females. 〈i〉MoY〈/i〉 is Y-linked and functionally conserved in other species of the Tephritidae family, highlighting its potential to serve as a tool for developing more effective control strategies against these major agricultural insect pests.〈/p〉
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  • 86
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 87
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 88
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 89
    Publication Date: 2019
    Description: 〈p〉Membraneless organelles involved in RNA processing are biomolecular condensates assembled by phase separation. Despite the important role of intrinsically disordered protein regions (IDRs), the specific interactions underlying IDR phase separation and its functional consequences remain elusive. To address these questions, we used minimal condensates formed from the C-terminal disordered regions of two interacting translational regulators, FMRP and CAPRIN1. Nuclear magnetic resonance spectroscopy of FMRP-CAPRIN1 condensates revealed interactions involving arginine-rich and aromatic-rich regions. We found that different FMRP serine/threonine and CAPRIN1 tyrosine phosphorylation patterns control phase separation propensity with RNA, including subcompartmentalization, and tune deadenylation and translation rates in vitro. The resulting evidence for residue-specific interactions underlying co–phase separation, phosphorylation-modulated condensate architecture, and enzymatic activity within condensates has implications for how the integration of signaling pathways controls RNA processing and translation.〈/p〉
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  • 90
    Publication Date: 2019
    Description: 〈p〉SARM1 (sterile alpha and TIR motif containing 1) is responsible for depletion of nicotinamide adenine dinucleotide in its oxidized form (NAD〈sup〉+〈/sup〉) during Wallerian degeneration associated with neuropathies. Plant nucleotide-binding leucine-rich repeat (NLR) immune receptors recognize pathogen effector proteins and trigger localized cell death to restrict pathogen infection. Both processes depend on closely related Toll/interleukin-1 receptor (TIR) domains in these proteins, which, as we show, feature self-association–dependent NAD〈sup〉+〈/sup〉 cleavage activity associated with cell death signaling. We further show that SARM1 SAM (sterile alpha motif) domains form an octamer essential for axon degeneration that contributes to TIR domain enzymatic activity. The crystal structures of ribose and NADP〈sup〉+〈/sup〉 (the oxidized form of nicotinamide adenine dinucleotide phosphate) complexes of SARM1 and plant NLR RUN1 TIR domains, respectively, reveal a conserved substrate binding site. NAD〈sup〉+〈/sup〉 cleavage by TIR domains is therefore a conserved feature of animal and plant cell death signaling pathways.〈/p〉
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  • 91
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 92
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 93
    Publication Date: 2019
    Description: 〈p〉The near-Earth asteroid (162173) Ryugu is a 900-m-diameter dark object expected to contain primordial material from the solar nebula. The Mobile Asteroid Surface Scout (MASCOT) landed on Ryugu’s surface on 3 October 2018. We present images from the MASCOT camera (MASCam) taken during the descent and while on the surface. The surface is covered by decimeter- to meter-sized rocks, with no deposits of fine-grained material. Rocks appear either bright, with smooth faces and sharp edges, or dark, with a cauliflower-like, crumbly surface. Close-up images of a rock of the latter type reveal a dark matrix with small, bright, spectrally different inclusions, implying that it did not experience extensive aqueous alteration. The inclusions appear similar to those in carbonaceous chondrite meteorites.〈/p〉
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  • 94
    Publication Date: 2019
    Description: 〈p〉Van Meter 〈i〉et al〈/i〉. (Reports, 27 April 2018, p. 427) warn that achieving nitrogen reduction goals in the Gulf of Mexico will take decades as a result of legacy nitrogen effects. We discuss limitations of the modeling approach and demonstrate that legacy effects ranging from a few years to decades are equally consistent with observations. The presented time scales for system recovery are therefore highly uncertain.〈/p〉
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  • 95
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 96
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 97
    Publication Date: 2019
    Description: 〈p〉Malaria parasites adopt a remarkable variety of morphological life stages as they transition through multiple mammalian host and mosquito vector environments. We profiled the single-cell transcriptomes of thousands of individual parasites, deriving the first high-resolution transcriptional atlas of the entire 〈i〉Plasmodium berghei〈/i〉 life cycle. We then used our atlas to precisely define developmental stages of single cells from three different human malaria parasite species, including parasites isolated directly from infected individuals. The Malaria Cell Atlas provides both a comprehensive view of gene usage in a eukaryotic parasite and an open-access reference dataset for the study of malaria parasites.〈/p〉
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  • 98
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 99
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 100
    Publication Date: 2019
    Description: 〈p〉Soil organisms represent the most biologically diverse community on land and govern the turnover of the largest organic matter pool in the terrestrial biosphere. The highly complex nature of these communities at local scales has traditionally obscured efforts to identify unifying patterns in global soil biodiversity and biogeochemistry. As a result, environmental covariates have generally been used as a proxy to represent the variation in soil community activity in global biogeochemical models. Yet over the past decade, broad-scale studies have begun to see past this local heterogeneity to identify unifying patterns in the biomass, diversity, and composition of certain soil groups across the globe. These unifying patterns provide new insights into the fundamental distribution and dynamics of organic matter on land.〈/p〉
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