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  • Chemistry  (38,657)
  • 42.75
  • 2010-2014  (65)
  • 1975-1979  (29,418)
  • 1950-1954  (9,223)
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  • 1
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.5
    Publication Date: 2017-03-16
    Description: Tweestaarten Diplura behoren met de springstaarten Collembola en beentasters Protura tot de Entognatha. Dat zijn kleine ongevleugelde bodemdieren met zes poten, die zich onderscheiden van de insecten door hun verzonken monddelen. Tot nu toe waren twee soorten voor Nederland gemeld, maar voor België 13. Tijdens een onderzoek naar in mierennesten levende organismen werden twee soorten gevonden die nog niet uit Nederland bekend waren. Verder onderzoek zal zeker nog meer nieuwe tweestaarten kunnen opleveren.
    Keywords: Diplura ; Nederland ; Campodea lubbocki ; Campodea plusiochaeta ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 2
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.67
    Publication Date: 2017-03-16
    Description: Larven van kriebelmuggen komen uitsluitend voor in stromend water, waar ze met hun waaiervormige monddelen deeltjes filteren uit het voorbij stromende water. Het zijn goede indicatoren voor zuurstofrijk water. Tot nu toe was niet duidelijk welke soorten precies voorkomen in Nederland en België en de determinatie van kriebelmuggen wordt vaak als lastig beschouwd. Om dit te verhelpen, presenteren we hier determinatietabellen voor alle in Nederland en België voorkomende soorten, zowel voor larven van het laatste stadium als voor poppen.
    Keywords: Diptera ; Simuliidae ; Nederland ; België ; herkenning ; verspreiding ; ecologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 3
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.17
    Publication Date: 2017-03-16
    Description: De catalogus van de Nederlandse kevers uit 2010 geeft het meest recente overzicht van de Nederlandse kevers. Er staan 372 soorten loopkevers op deze lijst. Per soort wordt een overzicht gegeven van de provincies waaruit waarnemingen bekend zijn. Voor elk zogenaamd provincierecord is een collectie-exemplaar aangeduid als bewijsexemplaar. Sinds 2010 is er veel nieuwe informatie over loopkevers bekend geworden. In dit artikel worden de wijzigingen in de lijst toegelicht.
    Keywords: Coleoptera ; Carabidae ; Nederland ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 4
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.1
    Publication Date: 2017-03-16
    Description: Hoe een leek op het gebied van wespen en bijen toch een leuke vondst kan doen. Op zonnige dagen gaat de auteur regelmatig op ‘tuinsafari’. Een tuin waarin rekening wordt gehouden met vogels en insecten, door keuze van beplanting en het ophangen van insectenhotels. De inspanningen leverden op 23 juli 2014 een opvallende wesp op. In een bijna automatische reactie werden snel foto’s gemaakt, in de hoop ze later te kunnen determineren. De wesp vloog daarna weg en werd niet meer gezien. Na determinatie blijkt het reuzenertswesp Leucospis dorsigera te zijn, een nieuwe soort bronswesp voor Nederland.
    Keywords: Hymenoptera ; Chalcidoidea ; Leucospis dorsigera ; Nederland ; herkenning ; biologie ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 5
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.27
    Publication Date: 2017-03-16
    Description: De gewone citroenzweefvlieg Xanthogramma pedissequum is een eenvoudig te herkennen zweefvlieg. Tenminste, dat dachten we tot voor kort. Nu blijkt dat de bijna identieke X. dives en X. stackelbergi ook in Nederland rondvliegen. Gelukkig zijn er enkele kenmerken waarmee deze drie soorten citroenzweefvlieg in het veld redelijk herkenbaar blijken. In dit artikel bespreken we deze kenmerken en geven we informatie over verspreiding en vliegtijden van de drie soorten.
    Keywords: Diptera ; Syrphidae ; Xanthogramma dives ; Xanthogramma stackelbergi ; Nederland ; herkenning ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 6
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.55
    Publication Date: 2017-03-16
    Description: Wespblaaskoppen Leopoldius worden ondanks hun opvallende uiterlijk maar weinig waargenomen. De soorten zijn lastig van elkaar te onderscheiden en bovendien werden tot voor kort variabele kenmerken gebruikt, wat tot veel verwarring heeft geleid. Nu blijkt dat alleen vrouwtjes met zekerheid te herkennen zijn aan de vorm van het klampje. Dit is een lepelvormig uitsteeksel onder het vijfde achterlijfsegment. Het wordt gebruikt bij het afzetten van eieren op een gastheer. Waarschijnlijk zijn limonadewespen de belangrijkste gastheer van Leopoldius. In dit artikel wordt een nieuwe soort voor België en een nieuwe soort voor Luxemburg gemeld. Daarnaast wordt een overzicht geboden van waarnemingen in Nederland, België en Luxemburg en een sleutel tot de Noordwest-Europese soorten.
    Keywords: Diptera ; Conopidae ; Leopoldius ; Nederland ; België ; Luxemburg ; herkenning ; biologie ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 7
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.93
    Publication Date: 2017-03-16
    Description: Ondanks de fors toegenomen aandacht voor watermacrofauna sinds begin jaren 1980 is de schietmot Molanna albicans maar sporadisch aangetroffen. In dit artikel wordt de eerste larvenvondst van M. albicans buiten Drenthe beschreven. Samen met de vindplaatsen in Drenthe is de soort nu van vijf vennen in Nederland bekend. Aanvullend worden de determinatiekenmerken aan de hand van foto’s geïllustreerd.
    Keywords: Trichoptera ; Molannidae ; Molanna albicans ; Nederland ; verspreiding ; biologie ; herkenning ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 8
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.81
    Publication Date: 2017-03-16
    Description: Caddisflies are a species rich insect order. The adults are moth-like, but their wings bear hairs instead of scales. The larvae are aquatic and live in self-constructed cases, made of plant material, sand or debris. The species are used as indicators of water quality, but much is still not known about their biology and ecology. In this paper the preferred substrates and phenology of the larvae of 13 species are described, using the data of a survey of two lowland streams in the east of the Netherlands.
    Keywords: Trichoptera ; ecology ; phenology ; Netherlands ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 9
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.37
    Publication Date: 2017-03-16
    Description: Slakkendodende vliegen danken hun naam aan hun roofzuchtige, parasitaire larven, die het op slakken gemunt hebben. Uit België en Nederland zijn circa 60 soorten uit deze familie bekend, maar er zijn er zeker meer te ontdekken. Dit artikel meldt een nieuwe soort voor de Nederlandse fauna uit het genus Psacadina, dat in beide landen drie soorten telt. De herkenning en het voorkomen van de drie soorten wordt uitgebreid besproken.
    Keywords: Diptera ; Sciomyzidae ; Psacadina ; Nederland ; België ; biologie ; herkenning ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 10
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.33
    Publication Date: 2017-03-16
    Description: Zwarte vliegen behoren tot de muggen, maar door hun korte antennen doen ze oppervlakkig aan vliegen denken. De mannetjes zien er met hun grote kop en grote ogen heel anders uit dan de vrouwtjes, die een kleine kop met kleine ogen hebben. In het voorjaar vormen sommige soorten opvallend grote zwermen op windluwe plekken. Aan de 17 soorten die reeds uit Nederland bekend waren, kan er nu één worden toegevoegd: Bibio venosus.
    Keywords: Diptera ; Bibionidae ; Bibio venosus ; herkenning ; biologie ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 11
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.11
    Publication Date: 2017-03-16
    Description: Astrobunus laevipes is een hooiwagen die via het Rijnbekken recentelijk ons land is binnengekomen. Er waren al vondsten langs de Waal en Nederrijn in Gelderland en het meest oostelijke puntje van de provincie Utrecht. Door gerichte inventarisaties kunnen wij de hooiwagen nu nieuw voor de provincies Zuid-Holland en Noord-Brabant melden. Daarnaast is er van A. laevipes nu ook een waarneming langs de IJssel en enkele westelijker in de provincie Utrecht. Allerlei rivierbegeleidende biotopen langs (uitlopers van) de Nederrijn en Waal worden al door deze opmerkelijke hooiwagen bevolkt, maar de noordelijke uitbreiding via de IJsselvallei lijkt veel trager te verlopen. De Maas lijkt nog niet bereikt.
    Keywords: Opiliones ; Astrobunus leavipes ; Nederland ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 12
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.43
    Publication Date: 2017-03-16
    Description: De familie der sluipvliegen is één der soortenrijkste vliegenfamilies in ons land. De larven ontwikkelen zich inwendig in ongewervelden, veelal vlinderrupsen. De familie is in ons land relatief goed bestudeerd. In dit artikel wordt wederom een soort voor het eerst uit ons land vermeld. Hiermee komt het totaal aantal soorten dat in Nederland ooit vastgesteld is op 334.
    Keywords: Diptera ; Tachinidae ; Pexopsis aprica ; Nederland ; verspreiding ; biologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 13
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.111
    Publication Date: 2017-03-16
    Description: Mariene borstelwormen vormen een ecologisch belangrijke, soortenrijke groep. Van diverse families is niet veel bekend over het voorkomen in Nederland en de bamboewormen (familie Maldanidae) behoren tot de slechtst bekende groepen. Bamboewormen danken hun naam aan de lange en aan het uiteinde verdikte segmenten. In dit artikel wordt een nieuwe bamboeworm voor Nederland besproken en een opsomming gegeven van de nu bekende inheemse soorten.
    Keywords: Polychaeta ; Maldanidae ; Micromaldane ornithochaeta ; Nederland ; herkenning ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 14
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.47
    Publication Date: 2017-03-16
    Description: Slakkendodende vliegen zijn nog relatief slecht onderzocht in ons land, zeker de kleine soorten. De vertegenwoordigers van het genus Anticheta zijn kleine vliegjes, waarvan slechts twee soorten uit ons land bekend waren. Uitgebreider onderzoek, zowel in collecties als in het veld, heeft twee nieuwe soorten voor de fauna aan het licht gebracht: Anticheta nigra en A. obliviosa. Van de eerste soort waren wereldwijd slechts acht exemplaren bekend.
    Keywords: Diptera ; Sciomyzidae ; Anticheta ; Nederland ; herkenning ; biologie ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 15
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.37
    Publication Date: 2017-03-16
    Description: Zelfs in een goed onderzochte insectengroep als de zweefvliegen zijn nog altijd nieuwe soorten voor de Nederlandse fauna te ontdekken. Ook in 2014 was het weer raak, dit keer in het fraaie natuurgebied rond de Drentsche Aa. Het lijkt niet toevallig dat deze aanvulling op de Nederlandse fauna juist hier werd gevonden. Deze vindplaats vult ecologische informatie uit het buitenland aan, waardoor langzamerhand een beeld begint te ontstaan van de levenswijze van deze zeldzame zweefvlieg, waarover tot voor kort weinig bekend was.
    Keywords: Diptera ; Syrphidae ; Cheilosia frontalis ; Nederland ; herkenning ; biologie ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 16
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.75
    Publication Date: 2017-03-16
    Description: De doornkaakzandbij ziet er in het voorjaar een beetje anders uit dan in de zomer. Daarom worden de voorjaarsdieren door sommigen tot een andere soort beschouwd dan de zomerdieren. Uit Nederland zijn slechts drie exemplaren bekend: twee uit het voorjaar en één uit de zomer. Toevallig komen alle exemplaren uit hetzelfde gebied. Of is dit geen toeval?
    Keywords: Hymenoptera ; Apoidea ; Andrenidae ; Andrena trimmerana ; Nederland ; herkenning ; verspreiding ; biologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 17
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.29
    Publication Date: 2017-03-16
    Description: Elfjes behoren tot de vroegste zweefvliegen die in het voorjaar uit de pop kruipen. Rond bloeiende wilgen wemelt het vaak van wilgenelfjes Melangyna lasiophthalma, waardoor het zoeken naar de zeldzamere soorten soms lastig is. Toch zijn de meeste soorten relatief makkelijk van elkaar te onderscheiden. Met de vondst van het Sachalinelfje M. pavlovskyi wordt het echter weer iets lastiger.
    Keywords: Diptera ; Syrphidae ; Melangyna pavlovskyi ; Nederland ; herkenning ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 18
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.19
    Publication Date: 2017-03-16
    Description: Steltmuggen lijken op langpootmuggen en zijn daar nauw aan verwant. Veel soorten zijn groot en karakteristiek gekleurd, maar toch zijn ze in Nederland nog weinig bestudeerd. Dit artikel bewijst dat er nog veel te ontdekken valt: in één jaar tijd zijn drie soorten gevonden die nog niet uit ons land bekend waren: Atypophthalmus inustus, Molophilus niger en Arctoconopa melampodia. Hiermee komt het totaal aantal soorten voor Nederland op 149. De nieuwe meldingen sluiten goed aan op het bekende verspreidingsgebied.
    Keywords: Diptera ; Limoniidae ; Nederland ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 19
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.9
    Publication Date: 2017-03-16
    Description: Jalla dumosa is een in Nederland zeer zeldzame pentatomide, die in 1969 voor het laatst was waargenomen op Terschelling. Na 45 jaren zonder waarnemingen werd ze in 2014 weer in klein aantal waargenomen in de Kooiduinen op Ameland. Rupsen van onder andere de duinparelmoervlinder en de sint-jansvlinder stonden daar op het menu. In deze bijdrage wordt informatie samengevat over de vondsten in Nederland, de biologie en de verspreiding van de soort.
    Keywords: Heteroptera ; Pentatomidae ; Jalla dumosa ; Nederland ; verspreiding ; biologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 20
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.103
    Publication Date: 2017-03-16
    Description: In August 2014 the exotic jellyfish Blackfordia virginica was captured in the harbour of Amsterdam. This is the first confirmed record of this species in the Netherlands, although in October 2013 a possible specimen was filmed and released. This indicates that the species might be established in the Amsterdam area, although repeated introduction with ballast water cannot be ruled out. In September 2014 hydrozoan polyp colonies closely resembling those of B. virginica were collected near IJmuiden in the Noordzeekanaal, a canal connecting Amsterdam with the North Sea at IJmuiden.
    Keywords: Cnidaria ; Hydrozoa ; Blackfordia virginica ; Netherlands ; exotic species ; distribution ; identification ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 21
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.1
    Publication Date: 2017-03-16
    Description: Wie een steen of boomstronk omkeert en voor het eerst een Trogulus opmerkt, zal dit bizarre beest niet direct associëren met een hooiwagen. Met de korte, stevige poten, het afgeplatte achterlijf dat overdekt is met strooisel en zand, en een trage manier van voortbewegen is het een ongewone verschijning. De soorten van dit geslacht zijn bodembewoners die zich voornamelijk voeden met kleine huisjesslakken. Uit ons land waren tot nu toe twee soorten bekend. De identiteit van een van die twee was lang onzeker, maar door nieuwe inzichten is nu duidelijk om welke soort het werkelijk gaat. In Nederland blijkt bovendien nog een derde soort voor te komen, die hier voor het eerst gemeld wordt.
    Keywords: Opiliones ; Trogulidae ; Trogulus ; Nederland ; herkenning ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 22
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.47
    Publication Date: 2017-03-16
    Description: Roofvliegen zijn met 40 Nederlandse soorten een vrij kleine groep, die behoorlijk goed is onderzocht. Het gebeurt dan ook niet vaak dat er een nieuwe soort voor de Nederlandse fauna kan worden opgetekend. De meeste roofvliegen zijn grijze vliegen, zo niet de stamjagers van het genus Choerades. Dit zijn juist vrij opvallend gekleurde vliegen. Zo heeft de rode dennenstamjager Choerades gilvus een rood gekleurd achterlijf. Opmerkelijk genoeg blijkt dat in Nederland juist onder deze opvallende verschijning twee soorten schuilgaan.
    Keywords: Diptera ; Asilidae ; Choerades igneus ; Nederland ; verspreiding ; biologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 23
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.43 (2014) p.23
    Publication Date: 2017-03-16
    Description: Onlangs werd op een braakliggend terrein in Roermond de zaadkever Bruchus brachialis verzameld. Dit is de eerste Nederlandse vondst van deze zuidelijke soort. Een reeks recente waarnemingen uit de ons omringende landen laat zien dat deze soort al enige jaren in een noordwaartse areaaluitbreiding verwikkeld is. Met deze ontdekking komt het aantal Nederlandse Bruchus-soorten op zeven.
    Keywords: Coleoptera ; Chrysomelidae ; Nederland ; herkenning ; biologie ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 24
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.63
    Publication Date: 2017-03-16
    Description: Nieuw gevormd landschap, zoals jonge duinvalleien, opgespoten polders en bedrijventerreinen in ontwikkeling vormen de habitat van gespecialiseerde soorten. Je moet tegen een stootje kunnen om in een dergelijke zandige, schaars begroeide omgeving te overleven. Vooral langdurig warme, droge perioden vormen een probleem voor vochtminnende bodemdieren. De springstaartsoorten die hier overleven zijn warmteminnend en droogteresistent, een bijzondere combinatie voor bodemdieren. Dit geldt ook voor Entomobrya unostrigata, een nieuwe aanwinst voor de fauna van Noordwest-Europa. Er is een aantal populaties van deze soort op de Tweede Maasvlakte gevonden. De dieren zaten hier onder stenen en hout op opgespoten zand.
    Keywords: Collembola ; Entomobryidae ; Entomobrya unostrigata ; Nederland ; herkenning ; verspreiding ; biologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 25
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.71
    Publication Date: 2017-03-16
    Description: De Polychaeta vormen een groep van vrijwel uitsluitend mariene wormen, gekenmerkt door een geleed lichaam met aan de meeste leden een tamelijk groot aantal borstels. Het is een soortenrijke groep; ze spelen een belangrijke rol in de ecologie en diversiteit van vooral zachte, maar ook harde zeebodems. In vergelijking met de kreeftachtigen en weekdieren, eveneens soortenrijke groepen in dezelfde biotoop, zijn borstelwormen minder goed onderzocht. In dit artikel wordt de zeerups Fimbriosthenelais minor nieuw voor ons land gemeld. Met name op stenige en schelprijke bodems zijn nog meer nieuwe borstelwormen voor ons land te verwachten.
    Keywords: Polychaeta ; Sigalionidae ; Fimbriosthenelais minor ; Nederland ; herkenning ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 26
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.42 (2014) p.55
    Publication Date: 2017-03-16
    Description: Het kalkdoorntje is een zeldzame sprinkhanensoort, die vooral bekend is uit Zuid-Limburg en van enkele locaties in het rivierengebied. Over het voorkomen van dit kleine sprinkhaantje binnen de Gelderse Poort was lange tijd weinig bekend. Pas vanaf 2007 worden regelmatig waarnemingen gedaan. Toevallige waarnemingen op, voor de auteur, onverwachte locaties vormden de aanleiding voor een grondige inventarisatie in de jaren 2011-2013. Hieruit komt naar voren dat het kalkdoorntje een ruime verspreiding heeft binnen de Gelderse Poort en een meer diverse biotoopkeuze heeft dan voorheen bekend was.
    Keywords: Orthoptera ; Tetrigidae ; Tetrix tenuicornis ; verspreiding ; biologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 27
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    Nature Publishing Group (NPG)
    Publication Date: 2014-12-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2014 Dec 18;516(7531):S72. doi: 10.1038/516S72a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25517243" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry ; China ; Cities ; Periodicals as Topic/statistics & numerical data ; Research/standards/*statistics & numerical data/trends ; Universities/statistics & numerical data
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 28
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    Nature Publishing Group (NPG)
    Publication Date: 2014-12-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2014 Dec 18;516(7531):S69. doi: 10.1038/516S69a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25517242" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry ; China ; Cities ; Periodicals as Topic/statistics & numerical data ; Physics ; Research/standards/*statistics & numerical data/trends ; Universities/statistics & numerical data
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 29
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2014-01-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brenner, Sydney -- New York, N.Y. -- Science. 2014 Jan 17;343(6168):262. doi: 10.1126/science.1249912.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institute of Molecular and Cell Biology, 61 Biopolis Drive, Singapore, 138673.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24436413" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry ; England ; History, 20th Century ; History, 21st Century ; Molecular Biology/*history ; *Nobel Prize ; Sequence Analysis, DNA/*history/methods
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 30
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.41 (2013) p.79
    Publication Date: 2015-12-09
    Description: The relative sensitivities of 309 common invertebrate species in Dutch marine waters are presented for environmental and anthropogenic pressures like organic enrichment, sedimentation and fisheries. The species were furthermore appointed to trophic groups like suspension and deposit feeders. The Dutch Ministry of Infrastructure and the Environment uses these data when calculating the Benthic Ecosystem Quality Index 2 and the Infaunal Trophic Index. These metrics aid in the mandatory monitoring of ecological quality for example for the European Water Framework Directive. The common Dutch species were selected based on their abundance according to, 1. the mwtl dataset including results of on-going monitoring programs issued by the Ministry, 2. the monitoring by volunteer scuba-divers for the anemoon Foundation and 3. the monitoring of fouling plates for the project setl.
    Keywords: macrozoobenthos ; marine ; Netherlands ; environment ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 31
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.41 (2013) p.43
    Publication Date: 2015-12-09
    Description: Onze fauna verandert en de mariene fauna is daarop geen uitzondering. Zuidelijke soorten koloniseren onze kustwateren en exotische soorten worden door de mens aangevoerd. Voor sommige soorten is niet duidelijk waarom ze hier opduiken. De sterk veranderende kustbiotopen spelen ongetwijfeld eveneens een rol. Een niet-aflatende stroom onverwachte soorten, soms zelfs behorend tot nieuwe genera en zelfs families maken faunistisch onderzoek in de kustwateren verrassend en boeiend. In het kader van een inventarisatie van kreeftachtigen in het Deltagebied werden in de Oosterschelde bij Zierikzee verscheidene kleine monsters genomen van diverse substraten. De monsters van roodwieren bevatten een aantal opmerkelijke soorten. Dit artikel behandelt Uromunna spec., een zeepissebeddensoort van een familie die in ons land nog niet was aangetroffen.
    Keywords: Isopoda ; Munnidae ; Nederland ; Uromunna ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 32
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.41 (2013) p.31
    Publication Date: 2015-12-09
    Description: This paper describes the discovery of a settled juvenile specimen of the stomatopod Platysquilla eusebia on the Dutch part of the Dogger Bank in the central North Sea. This is the northernmost record in Europe. The species is native to the Mediterranean and to the Atlantic coast from Portugal up to France. Further investigations have to show if the species already forms populations this far north. As the planktonic stages of P. eusebia have already been recorded in prior years, the establishment of the species should not be a problem, providing the circumstances are favourable.
    Keywords: Malacostraca ; Stomatopoda ; Platysquilla eusebia ; distribution ; Netherlands ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 33
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.40 (2013) p.1
    Publication Date: 2015-12-09
    Description: Met enige regelmaat duiken nieuwe springstaartsoorten op in ons land. Het vinden van een nieuwe soort is soms op toeval gebaseerd. Op een foto van een sprinkhaan was naast de linker voorpoot een klein, donker vlekje te zien. Uitvergroot bleek het om een klein springstaartje te gaan. Het zwart-wit gestreepte patroon liet geen ruimte voor twijfel over de determinatie: Fasciosminthurus quinquefasciatus, een nieuwe springstaart voor de Nederlandse fauna. In dit artikel wordt het genus en de soort voorgesteld, beschrijven we de habitat en geven we informatie over de verspreiding in de rest van Europa.
    Keywords: Collembola ; Bourletiellidae ; Fasciosminthurus quinquefasciatus ; Nederland ; verspreiding ; herkenning ; biologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 34
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.39 (2013) p.49
    Publication Date: 2015-12-09
    Description: De roodbruine heiderouwzwever Exoprosopa capucina is een fraaie en karakteristieke koffiebruine verschijning op de Nederlandse heideterreinen. Zoals veel wolzwevers is deze te herkennen aan de vleugeltekening en de kleur van de lichaamsbeharing. Echter naarmate de dieren ouder worden verliezen ze deze beharing en wordt de determinatie lastiger. Vermoedelijk heeft het verfomfaaide uiterlijk van een vrouwtje Exoprosopa cleomene er voor gezorgd dat deze ruim 50 jaar onopgemerkt tussen de exemplaren van E. capucina heeft gestaan.
    Keywords: Diptera ; Bombyliidae ; Exoprosopa cleomene ; Nederland ; verspreiding ; herkenning ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 35
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.39 (2013) p.7
    Publication Date: 2015-12-09
    Description: In de afgelopen jaren werd op verschillende plekken in Nederland een houtzwamkever gevonden die tot nu toe niet officieel gemeld werd: Sulcacis bidentulus. Deze soort valt binnen de zeer eenvormige familie Ciidae op door de kleur van de dekschilden, die duidelijk iets lichter bruin zijn dan de rest van het lichaam. De soort zou zich ontwikkelen in de bleke borstelkurkzwam, die voornamelijk op populieren groeit. Oudere vondsten ontbreken en de ontdekking van deze soort op meerdere locaties duidt op een recente vestiging in ons land. Dit sluit aan bij de geconstateerde uitbreiding in Midden-Europa.
    Keywords: Coleoptera ; Ciidae ; Sulcacis bidentulus ; Nederland ; verspreiding ; biologie ; herkenning ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 36
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.39 (2013) p.35
    Publication Date: 2015-12-09
    Description: De boomkrekel is een slanke geelbruine krekel, die vooral opvalt door zijn melodieuze zang. Vroeger moest je naar Frankrijk om dit geluid te horen, maar tegenwoordig heerst ook in het rivierengebied bij Nijmegen een mediterrane sfeer. De boomkrekel is in 2004 voor het eerst langs de Waal gevonden en heeft zich daarna uitgebreid. In 2010 en 2011 heeft de Flora- en faunawerkgroep Gelderse Poort met vele vrijwilligers onderzoek gedaan naar de precieze verspreiding. In totaal werd de boomkrekel in 57 kilometerhokken gevonden en de verwachting is dat de soort zich de komende jaren verder zal uitbreiden.
    Keywords: Orthoptera ; Oecanthus pellucens ; Nederland ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 37
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.39 (2013) p.55
    Publication Date: 2015-12-09
    Description: Hongerwespen behoren tot de grote groep van de sluipwespen. Het zijn slanke wespjes die typisch met hangende pootjes vliegen, waarbij de verbrede achterschenen opvallen. Ze parasiteren bijen en mogelijk ook bepaalde angeldragende wespen en worden daarom vaak bij bijenhotels waargenomen. In het kader van dit artikel zijn de meldingen van Nederlandse hongerwespen kritisch beschouwd. In totaal zijn nu negen soorten uit ons land bekend, waarvan er hier maar liefst zes voor het eerst worden gemeld.
    Keywords: Hymenoptera ; Evanioidea ; Gasteruptiidae ; Nederland ; verspreiding ; herkenning ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 38
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.41 (2013) p.69
    Publication Date: 2015-12-09
    Description: As most of the sea bottom in the Dutch part of the North Sea consists of sand, marine fauna that live in association with hard substrates are rarely monitored. We report here on the results of a species inventory in June 2011 done by scuba-diving while focusing on a wreck on the Dogger Bank and on rocky bottoms on the Cleaver Bank. This resulted in various new records of species for the Dutch part of the North Sea. This result appeared for a large part linked to the added value of monitoring with scuba-divers. It is therefore concluded that scuba-divers should be used in addition to the more traditional monitoring methods in which dredges and grabs are used, if one aims at getting an accurate view of the biodiversity present in marine regions like the North Sea.
    Keywords: biodiversity ; hard substrata ; Netherlands ; marine ; scuba-diving ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 39
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.41 (2013) p.59
    Publication Date: 2015-12-09
    Description: Five years after the commissioning of the offshore wind farm Egmond aan Zee, the monopiles and the rocks of the scour protection layers were covered by a wide variety of marine organisms. This paper describes the results of qualitative and quantitative assessments carried out in 2008 and 2011. The assessments were based on video footage, pictures and samples collected by divers at three different wind turbines. The ecological relevance of identified taxa is also discussed.
    Keywords: offshore wind farms ; Netherlands ; biodiversity ; benthic zone ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 40
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.40 (2013) p.39
    Publication Date: 2015-12-09
    Description: De gouden kegelbij Coelioxys aurolimbata is uit ons land recent alleen bekend uit de zuidelijke helft van Limburg. Vóór 1960 kwam deze parasiet van de lathyrusbij Chalicodoma ericetorum ook in het rivierengebied voor. In juli van dit jaar werd de gouden kegelbij gevangen in Duiven. Mogelijk is dit de voorbode van een herovering van het rivierengebied door deze bedreigde soort.
    Keywords: Hymenoptera ; Apoidea ; Megachilidae ; Nederland ; Coelioxys aurolimbata ; verspreiding ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 41
    Publication Date: 2015-12-09
    Description: During an expedition with scuba-divers to the Dutch part of the Brown Ridge in the central North Sea in June 2013, two colonies of the jewel anemone Corynactis viridis were found on the wreck Anna Graebe. With the jewel anemone both a new species and a new animal order, the Corallimorpharia, are added to the autochthonous fauna of the Netherlands. This species typically occurs in the Mediterranean and along the Atlantic coast from Portugal and the west British Isles up to Shetland. As other records of settled colonies of C. viridis in the North Sea were recently reported from Belgian, German and English waters, it is concluded that the jewel anemone, which used to be known as an occasional visitor, should now be considered autochthonous in the North Sea.
    Keywords: Cnidaria ; Corallimorpharia ; Netherlands ; Corynactis viridis ; distribution ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 42
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.41 (2013) p.15
    Publication Date: 2015-12-09
    Description: In de bodem van de Noordzee leeft een bijzondere groep van kreeften. Zij brengen hun leven door in een ondergronds gangenstelsel: de molkreeften. Het zijn algemene bewoners van het Friese Front, de Oestergronden en de Klaverbank. In, op en bij deze kreeften leven verschillende andere diersoorten: parasitaire pissebedden, een mosdiertje en twee soorten tweekleppigen. Deze bijdrage gaat in op de ecologie van de molkreeften en hun symbionten.
    Keywords: Decapoda ; Upogebiidae ; Upogebia ; Nederland ; biology ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 43
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.41 (2013) p.1
    Publication Date: 2015-12-09
    Description: Bryozoa or moss animals constitute a conspicuous and species-rich component of hardsubstrate benthic communities in marine and estuarine habitats. To gain insight into the biodiversity of these habitats, knowledge of bryozoan species is indispensable. Since the last comprehensive publication on Dutch species in 2004 much new information has become available. Particularly from the Dutch part of the Continental Flat of the North Sea, the largest natural area of the Netherlands, many new records have been collected. Other reasons to present an updated review are changes in nomenclature, the arrival of some exotic species and identification issues.
    Keywords: Bryozoa ; Netherlands ; checklist ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 44
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.40 (2013) p.35
    Publication Date: 2015-12-09
    Description: Heleomyzidae zijn kleine tot middelgrote vliegen. Ze krijgen niet veel aandacht, omdat de meeste soorten een nogal verborgen leven leiden en bovendien niet opvallend gekleurd of getekend zijn. De Nederlandse familienaam, afvalvliegen, is voor de meeste soorten niet echt passend, maar veel soorten van de subfamilie Heteromyzinae, waartoe Tephrochlaena oraria behoort, worden dan wel weer vaker rond afval aangetroffen. Tephrochlaena oraria is echter in meerdere opzichten een buitenbeentje. Met deze soort komt de lijst van Nederlandse Heleomyzidae op 49.
    Keywords: Diptera ; Heleomyzidae ; Tephrochlaena oraria ; Nederland ; verspreiding ; herkenning ; biologie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 45
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.40 (2013) p.9
    Publication Date: 2015-12-09
    Description: Cucujus cinnaberinus is een recent voor Nederland ontdekte soort. De kever staat op de Habitatrichtlijn, wat onder meer betekent dat hij beschermd is en dat de populatie gemonitord dient te worden. Inventarisatie en monitoring gebeurt in het algemeen door het weghalen van schors van recent gestorven bomen. Hierdoor wordt het leefgebied van de kever echter flink aangetast. Wij voerden een klein onderzoek uit naar de mogelijkheden om C. cinnaberinus te vangen in azijnzuurvallen, zodat de habitat intact gelaten kan worden en de soort toch geïnventariseerd kan worden. Tijdens het voorjaar van 2013 werden vier vallen opgehangen op een locatie waar zich een populatie van deze soort bevindt. Er werden slechts twee individuen verzameld; de vangmethode lijkt dus niet bijzonder geschikt.
    Keywords: Coleoptera ; Cucujidae ; Cucujus cinnaberinus ; methode ; inventarisatie ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 46
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.39 (2013) p.95
    Publication Date: 2015-12-09
    Description: The tanaid Zeuxo holdichi, described in 1990 from Arcachon Bay in southwest France, has since then been recorded from west Portugal to northern Brittany and southwest England. The species is recorded here from the Netherlands, a further northward expansion of the range. It is hypothesised that Z. holdichi may be non-native to Europe.
    Keywords: Crustacea ; Tanaidae ; Zeuxo holdichi ; Netherlands ; distribution ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 47
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.41 (2013) p.49
    Publication Date: 2015-12-09
    Description: This paper reports on observations made during wreck dive expeditions in 2010-2012, in order to investigate the ecological relevance of shipwrecks on the Dutch Continental Shelf (dcs). Shipwrecks are biodiversity hotspots. The number of species recorded on shipwrecks is similar to the number of species found in soft bottoms of the entire dcs. The soft substrates, however, represent a vastly larger habitat on the dcs than the shipwrecks. Amongst many other taxa, juvenile and large Atlantic cod, linear skeleton shrimp, goldsinny wrasses and leopard spotted gobies were found in the shipwreck habitats. The presence of these important species and their absence from many other habitats, illustrate that shipwrecks function as key habitats, nurseries, and refugia that are rare or absent anywhere else in the Netherlands.
    Keywords: shipwrecks ; Netherlands ; biodiversity ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 48
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.40 (2013) p.23
    Publication Date: 2015-12-09
    Description: Wolzwevers zijn vliegen waarvan de larven parasitair leven bij andere insecten. Wolzwevers van het genus Villa veroorzaken vaak determinatieproblemen. Deze problemen lijken verleden tijd met recent gepubliceerde taxonomische inzichten. Eindelijk konden nu ook de Nederlandse exemplaren van dit genus op naam gebracht worden. Deze bleken te behoren tot vier soorten, waarvan er twee vermoedelijk reeds zijn verdwenen.
    Keywords: Diptera ; Bombyliidae ; Villa hottentotta ; Nederland ; verspreiding ; herkenning ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 49
    Publication Date: 2015-12-09
    Description: Sluipwespen van de groep van de Polysphinctini hebben een bijzondere levenswijze. Het vrouwtje van wesp legt een eitje op het achterlijf van een spin. Wanneer het eitje is uitgekomen brengt de larve haar hele leven op het achterlijf van de spin door. Ze maakt kleine wondjes in de huid en voedt zich met lichaamsvloeistof van de spin. Na verloop van tijd ontwikkelt de larve bulten op de rug, een teken dat ze bijna volgroeid is. Ze zuigt dan de spin leeg, de ‘grote slurp’ genaamd, en verpopt zich in het web. In dit artikel wordt de levenswijze van één van deze soorten, Acrodactyla quadrisculpta, voor het eerst beschreven en geïllustreerd.
    Keywords: Hymenoptera ; Ichneumonidae ; Araneae ; Tetragnathidae ; biologie ; Nederland ; Acrodactyla quadrisculpta ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 50
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.39 (2013) p.15
    Publication Date: 2015-12-09
    Description: De bladwespgenera Phyllocolpa, Tubpontania, Pontania en Euura hebben gemeenschappelijk dat ze gallen vormen op wilg. Recentelijk is er veel vernieuwend taxonomisch werk verricht aan deze groepen. In dit artikel wordt de Nederlandse situatie samengevat. Uit oudere literatuur waren 18 soorten bekend en in het recent gepubliceerde gallenboek worden nog eens 11 soorten voor het eerst voor ons land vermeld. In dit artikel worden nog acht soorten aan de lijst toegevoegd en twee soorten worden van de lijst afgevoerd. In totaal zijn nu 35 soorten galvormende bladwespen van wilg uit Nederland bekend.
    Keywords: Hymenoptera ; Tenthredinidae ; Nematinae ; Nederland ; verspreiding ; herkenning ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
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  • 51
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.40 (2013) p.15
    Publication Date: 2015-12-09
    Description: Snuitvliegen zijn rare snuiters onder de zweefvliegen. Ze hebben een verlengd gezicht en een lange tong. Hiermee kunnen ze foerageren op bloemen met diepliggende nectar, in tegenstelling tot de meeste andere zweefvliegen. Als genus zijn de vliegen makkelijk herkenbaar, maar de zeer zeldzame soorten tussen de zeer algemene gewone snuitvlieg uithalen was niet altijd even makkelijk. In dit artikel wordt de herontdekking van de rode snuitvlieg beschreven en een tabel gegeven voor de drie Noordwest-Europese soorten.
    Keywords: Diptera ; Syrphidae ; Rhingia rostrata ; Nederland ; verspreiding ; herkenning ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 52
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    In:  Nederlandse Faunistische Mededelingen (0169-2453) vol.39 (2013) p.89
    Publication Date: 2015-12-09
    Description: De larven van Trichoptera heten kokerjuffers en leven in het water. Veel soorten bouwen een kokertje van zand, takjes of ander materiaal, vandaar de Nederlandse naam. De volwassen dieren lijken wel wat op nachtvlinders en worden schietmotten genoemd. De laatste jaren heeft het onderzoek naar deze dieren een grote vlucht genomen. Enerzijds spelen ze een rol als indicator voor de waterkwaliteit. De larven worden dan ook veel verzameld tijdens macrofaunabemonsteringen door waterschappen. Anderzijds is er een groeiende groep entomologen die schietmotten bestudeert. In dit artikel wordt Ecclisopteryx dalecarlica voorgesteld, een nieuwe soort voor Nederland.
    Keywords: Trichoptera ; Limnephilidae ; Ecclisopteryx dalecarlica ; Nederland ; Belgie ; verspreiding ; herkenning ; 42.75
    Repository Name: National Museum of Natural History, Netherlands
    Type: Article / Letter to the editor
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  • 53
    Publication Date: 2013-04-05
    Description: The technological demand to push the gigahertz (10(9) hertz) switching speed limit of today's magnetic memory and logic devices into the terahertz (10(12) hertz) regime underlies the entire field of spin-electronics and integrated multi-functional devices. This challenge is met by all-optical magnetic switching based on coherent spin manipulation. By analogy to femtosecond chemistry and photosynthetic dynamics--in which photoproducts of chemical and biochemical reactions can be influenced by creating suitable superpositions of molecular states--femtosecond-laser-excited coherence between electronic states can switch magnetic order by 'suddenly' breaking the delicate balance between competing phases of correlated materials: for example, manganites exhibiting colossal magneto-resistance suitable for applications. Here we show femtosecond (10(-15) seconds) photo-induced switching from antiferromagnetic to ferromagnetic ordering in Pr0.7Ca0.3MnO3, by observing the establishment (within about 120 femtoseconds) of a huge temperature-dependent magnetization with photo-excitation threshold behaviour absent in the optical reflectivity. The development of ferromagnetic correlations during the femtosecond laser pulse reveals an initial quantum coherent regime of magnetism, distinguished from the picosecond (10(-12) seconds) lattice-heating regime characterized by phase separation without threshold behaviour. Our simulations reproduce the nonlinear femtosecond spin generation and underpin fast quantum spin-flip fluctuations correlated with coherent superpositions of electronic states to initiate local ferromagnetic correlations. These results merge two fields, femtosecond magnetism in metals and band insulators, and non-equilibrium phase transitions of strongly correlated electrons, in which local interactions exceeding the kinetic energy produce a complex balance of competing orders.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Tianqi -- Patz, Aaron -- Mouchliadis, Leonidas -- Yan, Jiaqiang -- Lograsso, Thomas A -- Perakis, Ilias E -- Wang, Jigang -- England -- Nature. 2013 Apr 4;496(7443):69-73. doi: 10.1038/nature11934.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physics and Astronomy, Iowa State University, Ames, Iowa 50011, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23552945" target="_blank"〉PubMed〈/a〉
    Keywords: Biology ; Chemistry ; Circular Dichroism ; Electronics ; Iron/chemistry ; *Magnetic Phenomena ; Magnetics ; Optics and Photonics ; Photosynthesis ; *Quantum Theory ; Temperature ; Time Factors
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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    Nature Publishing Group (NPG)
    Publication Date: 2013-12-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉McGee, Harold -- England -- Nature. 2013 Dec 19;504(7480):372-4. doi: 10.1038/504372a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24352277" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Aspergillus/metabolism ; Beer/microbiology ; Cheese/microbiology ; Chemistry ; *Fermentation ; *Food Technology ; Microbiology ; Saccharomyces cerevisiae/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 55
    Publication Date: 2013-10-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Shechtman, Dan -- England -- Nature. 2013 Oct 17;502(7471):S54-5. doi: 10.1038/502S54a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24132333" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry ; Developing Countries ; Education/statistics & numerical data ; Entrepreneurship/*economics ; Leadership ; Nobel Prize ; Research ; Technology/*economics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 56
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution May 1998
    Description: Planktonic protozoan grazers have the potential to significantly affect the chemistry of particle-associated trace metals. This is due both to the importance of protists as consumers of bacterial-sized particles, and to the unique low-pH, enzyme-rich microenvironment of the grazer food vacuole. This thesis examines the role of protozoan grazers in the marine geochemistry of strongly hydrolyzed, particle-reactive trace metals, in particular Th and Fe. A series of tracer experiments was carried out in model systems in order to determine the effect of grazer-mediated transformations on the chemical speciation and partitioning of radioisotopes C9Fe, 234Th, 51Cr) associated with prey cells. Results indicate that protozoan grazers are equally able to mobilize intracellular and extracellular trace metals. In some cases, protozoan regeneration of trace metals appears to lead to the formation of metal-organic complexes. Protozoan grazing may generate colloidal material that can scavenge trace metals and, via aggregation, lead to an increase in the metal/organic carbon ratio of aggregated particles. Model system experiments were also conducted in order to determine the effect of grazers on mineral phases, specifically colloidal iron oxide (ferrihydrite). Several independent techniques were employed, including size fractionation ors9Fe-labeled colloids, competitive ligand exchange, and iron-limited diatoms as "probes" for bioavailable Fe. Experimental evidence strongly suggests that protozoan grazing can affect the surface chemistry and increase the dissolution rate of iron oxide phases through phagotrophic ingestion. In further work on protozoan-mediated dissolution of colloidal Fe oxides, a novel tracer technique was developed based on the synthesis of colloidal ferrihydrite impregnated with 133Ba as an inert tracer. This technique was shown to be a sensitive, quantitative indicator for the extent of ferrihydrite dissolution/alteration by a variety of mechanisms, including photochemical reduction and ligand-mediated dissolution. In field experiments using this technique, grazing by naturally occuring protistan assemblages was shown to significantly enhance the dissolution rate of colloidal ferrihydrite over that in non-grazing controls. Laboratory and field results indicate that, when integrated temporally over the entire euphotic zone, protozoan grazing may equal or exceed photoreduction as a pathway for the dissolution of iron oxides.
    Description: This work was financially supported by a Department of Defense ONR-NDSEG Graduate Fellowship, Office ofNaval Research AASERT Award (N00014-94-1-0711), and the National Science Foundation EGB Program (OCE-9523910).
    Keywords: Protozoa ; Water chemistry ; Trace elements in water ; Marine zooplankton ; Chemistry
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 57
    Publication Date: 2021-05-19
    Description: Daily topical application of the aqueous ethanolic extract of the marine sea grass, Thalassia testudinum, on mice skin exposed to UVB radiation resulted in a dose dependent recovery of the skin macroscopic alterations over a 6-day period. Maximal effect (90%) occurred at a dose of 240 μg/cm2, with no additional effects at higher doses. Bioassay-guided fractionation of the plant extract resulted in the isolation of thalassiolin B (1). Topical application of 1 (240 μg/cm2) markedly reduces skin UVB-induced damage. In addition, thalassiolin B scavenged 2,2-diphenyl-2-picrylhydrazyl radical with an EC50=100 μg/ml. These results suggest that thalassiolin B is responsible for the skin regenerating effects of the crude extract of T. testudinum
    Description: Published
    Description: Flavonoids, Thalassiolin B, DPPH scavenged, antioxidant activity, Skin regenerating activity, Thalassia testudinum
    Keywords: Chemistry ; Pharmacology ; Chemistry ; Pharmacology
    Repository Name: AquaDocs
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  • 58
    Publication Date: 2021-05-19
    Description: Bioguided fractionation of Agelas cerebrum crude extract resulted in isolation of four bromopyrrole and four bromopyrrole aminoimidazole alkaloids, identified as 5-bromopyrrole-2-carboxylic acid (1), 4-bromopyrrole-2-carboxylic acid (2), 3,4-bromopyrrole-2-carboxylic acid (3), 4,5-bromopyrrole-2-carboxylic acid (4), oroidin (5), bromoageliferin (6), dibromoageliferin (7) and dibromosceptrin (8) on the basis of spectroscopic data analyses (UV, IR, HRMS, 1D and 2D NMR) and comparison with literature data. This is the first report of compounds 2 and 3 in a marine sponge belonging to the Agelas genus and the first evidence of the presence of 1 from a natural source.
    Description: Published
    Description: Agelas cerebrum, bromopyrrole alkaloids, antitumoral, antiprotozoal activity
    Keywords: Chemistry ; Alkaloids ; Sponges ; Alkaloids ; Sponges ; Chemistry
    Repository Name: AquaDocs
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  • 59
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    Nature Publishing Group (NPG)
    Publication Date: 2011-10-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lehn, Jean-Marie -- England -- Nature. 2011 Oct 12;478(7368):S8-9. doi: 10.1038/478S8a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21993827" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry ; Exobiology ; Hippocratic Oath ; Knowledge ; Motivation ; *Nobel Prize ; *Research Personnel/ethics/psychology/standards
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 60
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    Nature Publishing Group (NPG)
    Publication Date: 2011-04-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Van Noorden, Richard -- England -- Nature. 2011 Apr 21;472(7343):270-1. doi: 10.1038/472270a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21512544" target="_blank"〉PubMed〈/a〉
    Keywords: *Accidents ; Chemistry ; *Laboratories ; Occupational Health/*statistics & numerical data ; Research Personnel ; Students ; Universities
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 61
    Publication Date: 2021-05-19
    Description: La velocidad de descomposición de tres fenólicos, el p-hidroxibenzoico, el protocatecúico y el gálico, los cuales se diferencian en el número de grupos OH, fue investigada en el suelo. Con el aumento de grupos OH aumenta también la velocidad de descomposición microbial. El ácido gálico se descompone más rápido que el protocatecúico y este a su vez más rápido que el phidroxibenzoico.
    Description: The rate of decomposition of the three phenolics, p-hydroxybenzoic acid, protocatechuic acid and gallic acid, whose difference is the amount of OH-groups, was investigated in the soil. With the increase in OH-groups increases the rate of microbial decomposition. Gallic acid decomposes faster than protocatecuic acid and this again faster than p-hydroxybenzoic acid.
    Description: Published
    Keywords: Chemical decomposition ; OH Groups ; Microbes ; Phenols ; Chemistry ; Phenols ; Chemistry
    Repository Name: AquaDocs
    Type: Journal Contribution
    Format: pp.141-143
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  • 62
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    Nature Publishing Group (NPG)
    Publication Date: 2010-09-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lok, Corie -- England -- Nature. 2010 Sep 2;467(7311):18-21. doi: 10.1038/467018a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20811430" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry ; Financing, Government/legislation & jurisprudence ; Nanostructures/chemistry ; *Nanotechnology/economics ; *Research Support as Topic
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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    Nature Publishing Group (NPG)
    Publication Date: 2010-10-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Agre, Peter -- England -- Nature. 2010 Oct 14;467(7317):S11. doi: 10.1038/467S11a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20944611" target="_blank"〉PubMed〈/a〉
    Keywords: Aquaporins/metabolism ; Chemistry ; Happiness ; Interdisciplinary Communication ; Mentors ; Neurosciences/trends ; *Nobel Prize ; Peer Review, Research ; Politics ; Public Policy ; Research/standards/trends ; *Research Personnel/psychology/standards
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 64
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    Nature Publishing Group (NPG)
    Publication Date: 2010-10-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Crutzen, Paul J -- England -- Nature. 2010 Oct 14;467(7317):S10. doi: 10.1038/467S10a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20944610" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Chemistry ; Human Activities ; Interdisciplinary Communication ; Mentors ; *Nobel Prize ; Ozone/analysis ; Politics ; Public Opinion ; Public Policy ; *Research Personnel
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 65
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    Nature Publishing Group (NPG)
    Publication Date: 2010-10-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kroto, Harold W -- England -- Nature. 2010 Oct 14;467(7317):S13. doi: 10.1038/467S13a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20944613" target="_blank"〉PubMed〈/a〉
    Keywords: Chemistry ; Conservation of Energy Resources/methods ; Freedom ; Interdisciplinary Communication ; *Nobel Prize ; Nuclear Fission ; Peer Review, Research ; Private Sector/economics ; Public Opinion ; Research/economics/education ; *Research Personnel/economics/education ; Research Support as Topic/economics/methods
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 66
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979), S. 35-45 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Dielectric measurements have been carried out on partially hydrated collagen in the frequency ranges 100 kHz-5 MHz, 100 MHz-1 GHz, and 8-23 GHz. In the low-frequency range, a dispersion was observed around 100 kHz which results from inhomogeneous conductivity of the samples. A dielectric relaxation was observed aroud 0.3 GHz using time-domain-spectroscopy techniques. This relaxation can be considered to originate from mobile side chains. Microwave measurements indicate that the water relaxation may extend into the 10-GHz region. An apparent discrepancy between the main water relaxation time and the average rotational correlation time of water as measured by nmr line widths was resolved by the assumption that a fraction of the water molecules is bound to the collagen with residence times on the order of 10-6 sec, whereas the remainder of the water is only weakly bound and exhibits rotational rates on the order of 10-10 sec.
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  • 67
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979), S. 83-100 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A model for the time dependence of DNA conformational state probabilities is formulated in the form of first-order differential equations. This model is applied to investigate the renaturation and denaturation rates for T2 and T7 DNA as reported in the series of experiments by Record and Zimm. Qualitative agreement is found in denaturation and for series of renaturation experiments with the same initial condition. However, partial agreement with series of renaturation experiments having the same final condition is obtained only by including an initial bimolecular step with properly matched pairs of strands. Comparison of all experiments with the calculated rates yields 5 × 104 min-1 as the step rate for melting a single base pair.
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  • 68
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conventionally protected oligopeptides of the two homologous series Boc-(L-Ile)n-OMe and Boc-(D-aIle)n-OMe (n = 2-6) were synthesized in a standard stepwise fashion and their uv and CD spectra in 2,2,2-trifluoroethanol, and solid-state ir spectra were investigated. In addition, two oligomeric products derived from the NCAs of L-isoleucine and of D-allo-isoleucine and having a DP of 20 and 12, respectively, were studied in the solid state by x-ray and ir. No substantial differences between the properties of the diastereomeric oligomers in the solid state were noticed, a β-structure being very likely at least for the Boc-protected hexapeptides and the higher oligomers. In contrast, differences were observed between the spectroscopic properties of the diastereomeric oligopeptides, and especially of the hexapeptides, in trifluoroethanol solution. The different properties of the hexapeptides in solution were related to the existence, in the case of Boc-(L-Ile)6-OMe, of soluble molecular aggregates in which the peptide chains assume the β-conformation. These results provide an additional example of the influence of the configuration of asymmetric carbon atoms of the side chains on the conformational properties of peptide molecules in solution.
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  • 69
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979), S. 285-297 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The 1H-nmr chemical shifts and the spin-spin coupling constants of the common amino acid residues were measured in solutions of the linear tetrapeptides H-Gly-Gly-X-L-Ala-OH in D2O and H2O, the influence of X on the nmr parameters of the neighboring residues Gly 2 and Ala 4 was investigated. The titration parameters for the side chains of Asp, Glu, Lys, Tyr, and His were determined. The pKa values obtained in D2O, with the use of pH-meter readings with a combination glass electrode uncorrected for istope effects, were 0.06 pH units higher in the acidic range and 0.10 pH units higher in the basic range than the corresponding pKa values in H2O. This suggests that the present data are suitable “random-coil” 1H-nmr parameters for conformational studies of polypeptide chains in D2O and H2O solutions.
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  • 70
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979), S. 299-311 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: This paper shows that backbone amide proton titration shifts in polypeptide chains are a very sensitive manifestation of intramolecular hydrogen bonding between carboxylate groups and backbone amide protons. The population of specific hydrogen-bonded structures in the ensemble of species that constitutes the conformation of a flexible nonglobular linear peptide can be determined from the extent of the titration shifts. As an illustration, an investigation of the molecular conformation of the linear peptide H-Gly-Gly-L-Glu-L-Ala-OH is described. The proposed use of amide proton titration shifts for investigating polypeptide conformation is based on 360-MHz 1H-nmr studies of selected linear oligopeptides in H2O solutions. It was found that only a very limited number of amide protons in a polypeptide chain show sizable intrinsic intration shifts arising from through-bond interactions with ionizable groups. These are the amide proton of the C-terminal amino acid residue, the amide protons of Asp and the residues following Asp, and possibly the amide proton of the residue next to the N-terminus. Since the intrinsic titration shifts are upfield, the downfield titration shifts arising from conformation-dependent through-space interactions, in particular hydrogen bonding between the amide protons and carboxylate groups, can readily be identified.
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  • 71
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979), S. 359-372 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We present a method that can reduce conformational energy calculations for an arbitrary peptide consisting of n residues (n-peptide) to the complexity of a computation for (Gly)n. This reduction, and the concomitant savings in computer time, is accomplished by replacing all side chains, as well as the backbone CαHα and CαH2α groups, by “interaction centers.” The backbone CONH group is left intact in order to preserve its directional character. The interaction centers “see” each other, and the atoms of the CONH group via Boltzmann and space-averaged effective center-center and center-atom potentials, respectively. This averaged-interaction method is tested on the repeat tetra-, penta-, and hexapeptides of elastin, Val-Pro-Gly-Gly (VPGG), Val-Pro-Gly-Val-Gly (VPGVP), and Ala-Pro-Gly-Val-Gly-Val (APGVGV), using the stereoalphabet strategy for the energy calculations. The excellent qualitative and quantitative agreement we obtain with both full atom-atom calculations and extensive nmr data, coupled with the order-of-magnitude reduction in computer time, augurs well for the potential usefulness of the method.
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  • 72
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979), S. 393-409 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Linear response theory in the decorrelation or random-phase approximation is used to calculate the absorption and CD spectra of model helical polymers, including single-stranded polyadenylic acid. The method, which makes use of infinite polymer selection rules for the linear response tensor, has the advantages that (1) only a few three-dimensional matrices need be inverted; (2) spectral band shapes of the polymer arise naturally from those of the monomer, as well as from the geometry-dependent interactions in the helix; and (3) the spectral dependence on geometrical factors of the helix is made transparent. It is found that the structure of the polymer CD spectrum depends critically on monomer bandshape. An asymmetric CD spectrum, similar to some experimental spectra, arises from either a Gaussian or a composite monomer band. Single-stranded polyadenylic acid spectra are sensitive to helix geometry in the region 200-240 nm, in reasonable agreement with experimental spectra. This sensitivity arises from the 207-nm monomer transition, and the results suggest that this region of the spectrum should be more fully exploited as a tool for helix geometry studies.
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  • 73
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: C24H34N2O9, orthorhombic, P212121; a = 39.432 (10), b = 14.061 (5), c = 4.850 (2) Å, M = 494 a.m.u., Z = 4, Dm = 1.22 g cm-3, Dx = 1.22 g cm-3, R = 0.13 for 1205 observed reflections after refinement with isotropic thermal factors. The urethane and amide bonds are in the trans configuration, as well as all the ester groups. The ϕ and ψ angles of the L-glutamyl residues fall in the β-structure region of the Ramachandran's plot; the molecule is rather flat with the amide plane almost parallel to the c axis along which two hydrogen bonds hold the molecules together to form long rows in a “parallel pleated-sheet” fashion.
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  • 74
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The far-ir absorption spectrum of lysozyme was measured at room and liquid-nitrogen temperatures. Dried layers of single crystals of tetragonal lysozyme chloride with a diameter of 100-300 μm were grown on a silicon plate. Such single-crystalline samples were considered to have the following advantages in obtaining far-ir spectra: (1) surface scattering is reduced, (2) the protein molecules are closely packed, and (3) air-drying of the crystals reduces the number of water molecules without considerably changing the original configuration. The spectrum obtained consisted of a strong background absorption and a number of absorption peaks that were not clearly observed with the sample in the form of lyophilized powder. The peaks were ascribed to various delocalized vibrations of the main and side chains in the molecule. The peaks were also compared with the positions of Raman lines. The uniform background was assigned to the water molecules remaining in the crystals.
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  • 75
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    Biopolymers 18 (1979), S. 553-569 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The duplex-to-strand transition of the self-complementary sequence dG-dC-dG-dC has been probed at the exchangeable and nonexchangeable protons and backbone phosphates by high-resolution nmr spectroscopy. The Watson-Crick imino and amino hydrogen-bonded protons, as well as the exposed amino protons, could be followed through the duplex-to-strand transition and provide information on base-pair stability at the tetranucleotide duplex level. The magnitudes of the experimental upfield nonexchangeable base-proton chemical shifts on duplex formation are consistent with calculations based on base-pair overlap geometries of the B-DNA type. The variation of the 31P chemical shifts in dG-dC-dG-dC with temperature appear to monitor changes in the ω,ω′ rotation angles about the O—P bonds in the postmelting transition temperature region. The complex formed between the antitumor anthracycline antibiotic daunomycin and the dG-dC-dG-dC duplex was probed at the nucleic acid and the antibiotic resonances as a function of temperature. The experimental complexation shifts of the observable daunomycin resonances have put constraints on possible overlap geometries between the intercalating anthracycline ring and adjacent base pairs.
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  • 76
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Conformational analyses of cyclic tetrapeptides consisting of alternating cis and trans peptide units have been made using contact criteria and energy calculations. This study has been restricted to those structures having a symmetry element in the backbone ring, such as a twofold axis (d) or a center of inversion (i). There are five main results. (1) There are two distinct types of conformations, which are stereochemically favorable corresponding to each of twofold and inversion-symmetrical structures, designated as d1, d2 (for twofold symmetrical) and i1, i2 (for inversion-symmetrical). Among these, the i1 type has the lowest energy when glycyl residues occur at all four α-carbon atoms. (2) With the glycyl residue at all four α-carbon atoms, methyl substitution at the cis peptide nitrogen atoms is possible in all the four types, whereas the substitution at trans peptide nitrogen atoms is possible only for the i1 type. Thus only in the i1 type can all the nitrogen atoms be methylated simultaneously. The conformation of the molecule in the crystal structure of cyclotetrasarcosyl belongs to the i1 type. (3) When alanyl residues occur at all four α-carbon atoms, the possible symmetrical type is dependent on the enantiomorphic form and the actual sequence of the alanyl residues. (4) The methyl substitution at peptide nitrogen atoms for cyclic tetrapeptides having alanyl residues causes more stereochemical restriction in the allowed conformations than with glycyl residues. (5) The prolyl residue can be incorporated favorably at the cis-trans junction of both d and i types of structures. The results of the present study are compared with the data on cyclic tetrapeptides available from the crystal structure and nmr studies. The results show an overall agreement both regarding the type of symmetry and the conformational parameters.
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  • 77
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Based on equilibrium binding studies, as well as on kinetic investigations, two types of interactions of Cu2+ ions with native DNA at low ionic strength could be characterized, namely, a nondenaturing and a denaturing complex formation. During a fast nondenaturing complex formation at low relative ligand concentrations and at low temperatures, different binding sites at the DNA bases become occupied by the metal ions. This type of interaction includes chelate formation of Cu2+ ions with atoms N(7) of purine bases and the oxygens of the corresponding phosphate groups, chelation between atoms N(7) and O of C(6) of the guanine bases, as well as the formation of specific intestrand crosslink complexes at adjacent G°C pairs of the sequence dGpC. CD spectra of the resulting nondenatured complex (DNA-Cu2+)nat may be interpreted in terms of a conformational change of DNA from the B-form to a C-like form on ligand binding. A slow cooperative denaturing complex formation occurs at increased copper concentrations and/or at increased temperatures. The uv absorption and CD spectra of the resulting complex, (DNA-Cu2+)denat, indicate DNA denaturation during this type of interaction. Such a conclusion is confirmed by microcalorimetric measurements, which show that the reaction consumes nearly the same amount of heat as acid denaturation of DNA.From these and the kinetic results, the following mechanism for the denaturing action of the ligands is suggested: binding of Cu2+ ions to atoms N(3) of the cytosine bases takes place when the cytosines come to the outside of the double helix as a result of statistical fluctuations. After the completion of the binding process, the bases cannot return to their initial positions, and thus local denaturation at the G·C pairs is brought about. The probability of the necessary fluctuations occurring is increased by chelation of Cu2+ ions between atoms N(7) and O of C(6) of the guanine bases during nondenaturing complex formation, which loosens one of the hydrogen bonds within the G·C pairs, as well as by raising the temperature. The implications of the new binding model, which comprises both the sequence-specific interstand crosslinks and the described mechanism of denaturing complex formation, are discussed and some predictions are made. The model is also used to explain the different renaturation properties of the denatured complexes of Cu2+, Cd2+, and Zn2+ ions with DNA.In temperature-jump experiments with the nondenatured complex (DNA-Cu2+)nat, a specific kinetic effect is observed, namely, the appearance of a lag in the response to the perturbation. The resulting sigmoidal shape of the kinetic curves is considered to be a consequence of the necessity of disrupting a certain number of the crosslinks existing in the nondenatured complex before the local unwinding of the binding regions (a main step of denaturing complex formation) may proceed.
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  • 78
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    Biopolymers 18 (1979), S. 931-938 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: A new analysis has been made on studies of the influence of imino acid content on the changes of collagen thermal stability (tm). It is shown that, for the interstitial vertebrate collagens, there is a strict regularity in the changes of tm depending on hydroxyproline content. No correlation is observed between tm and proline content. Also, no correlation between tm and hydroxyproline content is observed for invertebrate and basement membrane collagens. On the basis of the reported data, the dependence of tm on hydroxyproline content is considered to be not a correlation between tm and the total content of hydroxyproline, but only as the correlation between tm and the content of hydroxyproline occurring at the third position in the sequence (Gly-R2-R3)n. The results agree with the idea that the influence exerted by proline and hydroxyproline on the stabilization of the triple helix of collagen is different.
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  • 79
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformation and conformational transitions of poly(His-Ala-Glu) have been investigated by ir, nmr, and CD measurements. The results obtained - as well as the results of our previous investigations by potentiometric titration and hydrodynamic techniques [Goren et al., Biopolymers (1977) 16, 1541-1555] - indicate that when dissolved in water, the co-polymer assumes a disordered conformation. On changing the pH of the solution, the states of ionization of the side-chain imidazole and carboxyl groups change in the same manner as in low-molecular-weight model compounds. Concomitantly, the overall shape of the macromolecule is altered, while the conformation of the polypeptide backbone changes from one disordered state to another but never assumes a regular form. In water/methanol and water/trifluoroethanol mixtures, transitions from a disordered state to the α-helix conformation were observed on increasing the alcohol content of the system. The conformational transitions followed pathways which differ from one another according to the experimental conditions employed. Conformational landmarks (intermediates) have been identified along these pathways.
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  • 80
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    Biopolymers 18 (1979), S. 1023-1026 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 81
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    Biopolymers 18 (1979), S. 1821-1828 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The decrease in the limiting viscosity number [η] with temperature T for hyaluronic acid in nonalkaline solution and chondroitin 4-sulfate in neutral and alkaline solutions may be expressed in terms of the temperature coefficient of the Kratky-Porod persistence length a: d ln a/dT = -0.0040 (±0.0005). The result, while numerically somewhat smaller, resembles qualitatively that of cellulose derivatives. As in the latter case, standard conformational calculations underestimate the coefficient, which may be due to neglect of random occurrence of local conformational features of higher energy. In alkaline solution, large decreases in [η] of hyaluronic acid are accompanied by a positive temperature coefficient of [η]. This temperature effect is interpreted as an endothermal shift from the alkaline, low [η] form of the polymer to the neutral, high [η] form with increasing temperature.
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  • 82
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    Biopolymers 18 (1979), S. 1809-1820 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have considered whether or not the tertiary structure of a biomolecule is the same in a crystal (or an oriented film) as it is in solution. A methodology has been developed for comparing polarized absorption spectra obtained from a solid-state sample with those obtained from an oriented solute to further resolve this question. An electric dichroism instrument built in our laboratory was used to measure the solution dichroism signal which, along with the ordinary solution uv absorption spectra, yields polarized absorption spectra in the directions parallel and perpendicular to the applied electric field. These were then compared to polarized absorption data from oriented films of nucleic acids to determine whether the two sets of data could be rotated into coincidence. This rotation was accomplished using a computer program based on a nonlinear programming method. Four nucleic acids were studied and the film and solution data for three of these were found to be equivalent, requiring rotation through an angle of 3°-20°, depending on film humidity, to bring them into coincidence. For the fourth sample we were unable, perhaps because of signal-to-noise ratio limitations, to find a correlation. Flow dichroism and electric dichroism data were also found to be quite similar. Thus it is clear that the induced dipole moment is along the helical axis and that the physical, hydrodynamical, and electrical axes of the nucleic acid molecules are equivalent.
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  • 83
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: The effect of enzyme-inhibitor complex formation on the hydration properties of the macromolecular moiety was investigated on the model system of α-chymotrypsin and its Ser-195 tosyl derivative. The primary (A-shell) hydration of the native and modified enzyme was compared by sorption measurements. The secondary (B-shell) hydration water was investigated by differential scanning calorimetry. Tosylation is known to induce pronounced conformational changes in the chymotrypsin molecule. These structural modifications have the following effects on the hydration of the native enzyme.The water binding capacity of the protein surface is significantly increased, as shown by both the calorimetric and the sorption results. The amount of unfreezable water of primary hydration is increased by 50 mol H2O/mol chymotrypsin.The heats (ΔH) and entropies (ΔS) of the interaction of water with chymotrypsin are strongly reduced in the modified enzyme. This effect is interpretable by a reduction of the H bonding potential of the protein surface. Parallel to this decrease in δH, the heats of fusion of the secondary hydration water (Qfus) are significantly increased by tosylation (Qfus = 256.2 ± 7.8 and 294.2 ± 4.8 J g-1 H2O for the native and the tosylated enzyme, respectively). This increase in Qfus reflects an increase in the extent of H bonding in the B-shell hydration sphere.These changes in the hydration of the native enzyme, associated with the reaction: native chymotrypsin → tosylchymotrypsin, are interpreted by cooperative phase transitions of water molecules in the primary and secondary hydration water. One of these transitions was found to exhibit a significant, linear enthalpy-entropy compensation effect. The compensation temperature \documentclass{article}\pagestyle{empty}\begin{document}$ \hat{\beta} $\end{document} is 290.7 ± 2.8°K. This \documentclass{article}\pagestyle{empty}\begin{document}$ \hat{\beta} $\end{document} value agrees well with compensation temperatures reported in the literature for a series of biochemical reactions in aqueous solution (250-320° K). This agreement in \documentclass{article}\pagestyle{empty}\begin{document}$ \hat{\beta} $\end{document} may point to a common source of both compensation phenomena.
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    Biopolymers 18 (1979), S. 1829-1830 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
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  • 85
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    Biopolymers 18 (1979), S. 1831-1833 
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
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    Biopolymers 18 (1979) 
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    Keywords: Chemistry ; Polymer and Materials Science
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  • 87
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    Biopolymers 18 (1979), S. 1835-1848 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The conformations of melanostatin have been studied experimentally using CD spectroscopy and via calculations. In aqueous solution and 2,2,2-trifluoroethanol (TFE) there is no evidence that monomers of the tripeptide exist in an ordered (β-bend) structure. In water and TFE solutions (3-6 × 10-4M) the neutral molecules aggregate very slowly, taking about 3 days to attain equilibrium at room temperature. At equivalent concentrations in TFE, although not in water, the cationic molecules also slowly aggregate, although to a lesser extent. Calculations using rotational isomeric state theory give the most probable unperturbed end-to-end distance of the molecule at 9.3 ± 0.1 Å and indicate that a vast majority of the molecules exist in some extended conformation, end-to-end distance ≥6 Å. Only 0.4% of the molecules are calculated to have O…H separations compatible with a β-bend structure. An intramolecular hydrogen bond must have an energy at least 2 kcal/mol lower than that of an intermolecular hydrogen bond to solvent if a β-bend is to be experimentally observable.
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  • 88
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    Keywords: Chemistry ; Polymer and Materials Science
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    Topics: Chemistry and Pharmacology
    Notes: Nps-[Glu(OBzl)]6-NHEt has been prepared by coupling Nps-[Glu(OBzl)]2-OH with HCl,H-[Glu(OBzl)]4-NHEt by means of dicyclohexylcarbodiimide. The ir spectra of its nujol mull show that the hexapeptide has the β-structure of antiparallel chains. When it is dissolved in dioxane or ethylene dichloride, the hexapeptide consists of a mixture of the β-form and the solvated σ-form, but the β-form can exist only above a certain critical concentration. The critical concentration is about 0.4g dl-1 in dioxane and 0.08g dl-1 in ethylene dichloride, and the content of β-form increases with increasing concentration above it. The CD of the dioxane and ethylene dichloride solutions shows concentration dependence in visible and uv regions.
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  • 89
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    Biopolymers 18 (1979), S. 2115-2126 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Light scattering from the solutions of Nps-[Glu(OBzl)]6-NHEt in dioxane or ethylene dichloride has been measured at different concentrations, and a critical concentration of intermolecular association is found to exist, which is equal to the critical concentration of β-form formation. The Debye plot of light scattering leads to the molecular weight of aggregates at the critical concentration, which corresponds to an aggregation number 15 in dioxane and 53 in ethylene dichloride. In the latter solvent the aggregates further associate into a larger aggregate consisting of 330 molecules when the concentration is increased beyond the critical concentration. The content of β-form, which is a measure of number of hydrogen bonds, is derived from the ir data previously obtained. The results on the modes of intermolecular association and hydrogen bonding lead to possible structures of aggregates formed by both hydrogen bonds and other nonbonding side-chain interactions.
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  • 90
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    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Low shear viscosities have been determined for a 1 mg/ml poly(L-lysine) solution as a function of added salt concentration in the region of the previously reported ordinary-extraordinary phase transition. The measured viscosities indicate that the polyions are far from completely extended at the transition. Estimates of the longest internal relaxation time for an equivalent free-draining Rouse-Zimm chain give τ ≃ 10-5 sec, similar to that of the rapid, angle-independent component previously observed in the dynamic light-scattering correlation function at the transition. An unusual peak and valley are observed in the curve of [η]0 versus [NaBr] in the transition region. Possible interpretations of these features, and their bearing on the nature of the extraordinary phase, are discussed.
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  • 91
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The crystal structure of the valinomycin analog, cyclo-[(-D-Val-Hyi-Val-D-Hyi-)3-] (meso-valinomycin, C60H102N6O18) has been determined by direct x-ray diffraction procedures. The crystals are triclinic, space group P1, number of molecules per unit cell Z = 1, and cell parameters a = 11.831, b = 13.815, c = 14.889 Å, α = 109.54°, β = 116.10°, γ = 98.89°. The atomic coordinates for the C,N,O atoms were refined in the anisotropic thermal motion approximation and for the H atoms in the isotropic approximation to R = 0.07.The structure is centrosymmetric and has a threefold axis of pseudosymmetry. The depsipeptide chain is in the form of a bracelet stabilized by six identical intramolecular 4 → 1 hydrogen bonds between the amide C=O and NH groups. The ester carbonyls are oriented towards the symmetry axis, their O atoms forming an ellipsoidal molecular cavity. The isopropyl side chains are located on the molecular periphery. The structure found differs considerably from the conformation of the crystalline naturally occurring antibiotic, valinomycin, but completely resembles that of valinomycin and meso-valinomycin in nonpolar solvents. In the crystal, meso-valinomycin molecules form stacks. The molecular cavities situated in the stacks one above the other along the pseudo-C3 axis form a continuous channel, the internal surface of which is lined by O atoms. The possible conformations of depsipeptides of the valinomycin series and their mode of action in membranes are discussed in the light of the data obtained.
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  • 92
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    Biopolymers 18 (1979), S. 2353-2356 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Large molecular weight bacteriophage G DNA, about five times larger than T2 DNA, was used to test Zimm's theory [(1974) Biophys. Chem. 1, 279-291] for the effect of rotor speed on the sedimentation of large linear monodisperse DNA. Sedimentation profiles from neutral sucrose gradinets at low and high rotor speeds show G DNA sedimenting from 1.8 to 0.7 times as fast as T2 DNA. Experimental measurements indicate that the sedimentation coefficient of G DNA decreases with increasing rotor speed about as fast as predicted by theory.
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  • 93
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    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have examined the NH stretching frequencies of N-acetyl-N′-methyl-L-alanineamide (blocked Ala), N-acetyl-N′-methylglycineamide (block Gly), and N-acetyl-N′-methyl-L-leucineamide (blocked Leu) in chloroform using irspectroscopy. Their spectrum of blocked Leu in carbon tetrachloride was also obtained. A major absorption band at 3450 cm-1 is attributed to the unperturbed NH stretching frequency. Another major band at 3437 cm-1 (for Ala) or 3432 cm-1 (for Leu) is attributed to conformations in which the NH stretching frequency is perturbed by the spatial proximity of the Cβ atom. An absorption band between 3300 and 3370 cm-1, which has in the past been assigned to the intramolecular hydrogen-bonded NH in the C7eq conformation, was found to be concentration dependent and could not be observed below 5 × 10-4M in chloroform; thus we find no evidence for a strongly hydrogen-bonded NH in the C7eq conformation in chloroform. An absorption band at 3416 cm-1 was observed in chloroform solutions of blocked Gly, and a similar absorption appeared as a shoulder on the 3437- and 3432-cm-1 bands of blocked Ala and blocked Leu, respectively, in the same solvent. These bands, occurring near 3416 cm-1, may be assigned to extended (C5) conformations [Avignon et al., Biopolymers 8, 69 (1969)]. In CCl4 the spectrum of blocked Leu remained concentration dependent below 2.8 × 10-4M, with the 3300-3370-cm-1 band progressively weakening and shifting to higher frequencies on dilution from higher concentrations. Analysis of the spectra indicates that there is considerable flexibility in the blocked single residues, in agreement with the results of conformational energy calculations.
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  • 94
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    Biopolymers 18 (1979), S. 2523-2535 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Type I collagen fibrillogenesis in vitro has been studied by laser light scattering, and the results indicate that initiation of aggregation involves at least two steps. Step I of aggregation involves no change in the intensity of scattered light at an angle of 90° and is accompanied by a decrease in the diffusion coefficient. Step II is characterized by an increased intensity of scattered light and decreased diffusion coefficients. Theoretical calculations using the Stokes-Einstein equation for the translational diffusion coefficient and the Perrin equation for the frictional coefficient of a prolate ellipsoid indicate that the step I aggregates are 4D staggered linear dimers and trimers 570 and 845 nm long, whereas step II aggregates are greater than 950 nm in length. These dimensions are similar to those previously reported based on physicochemical measurements and electron microscopy. It is proposed that the rate and extent of fibrillogenesis in vitro is controlled by the concentration of the linear aggregates and that the effects of temperature and collagen concentration on fibrillogenesis previously observed are qualitatively explained in terms of their effects on the concentration of these aggregates.
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    Biopolymers 18 (1979), S. 2537-2547 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The method hitherto used for estimating the electrostatic term in empirical intramolecular calculations of stable conformations of biologically important molecules and macromolecules and intermolecular calculations of molecular associations or packing energy in molecular crystals had been analyzed. It has been shown that the contribution of atomic hybridization moments is omitted in the calculation of electrostatic interactions from net atomic charges localized on nuclei which have been determined by standard quantum-chemical methods. This contribution plays an important part in determining electrostatic interactions, mainly in molecules containing atoms with lone pairs. Simultaneously, a modified method for calculating the electrostatic term comprising the interaction of the lone pairs, which are represented by atomic hybridization moments, has been proposed. The relationship between the atomic hybridization moment and the bond angle has been expressed for some typical configurations occurring in biologically important molecules. Finally, this new approach is illustrated by results of the conformational analysis of some model compounds for biomolecules and compared with the approach used so far for the estimation of the electrostatic interaction in empirical methods of calculation of the intra- and intermolecular energy.
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    Biopolymers 18 (1979), S. 2549-2567 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Intensity fluctuations of laser light scattered from filamentous viruses Pf1 [length L (Å) × diameter d (Å) = 20,000 × 90], M13 (9000 × 90), potato virus X (5150 × 130), and tobacco mosaic virus (3000 × 180) in sucrose density gradients were measured with a photon correlation spectrometer over a range of scattering angles from 15° to 120°. The experimental data can be approximated by two exponential decays, “slow” and “fast.” The slow decay rate constant ts-1 corresponds to the translational diffusion D of the virus, i.e., ts-1 = K2D, where K is the magnitude of the scattering vector. The amplitude of the slow component, i.e., translational diffusion, remains greater than that of the fast component, even at high KL. The fast decay rate constant tf-1 is also proportional to K2 for viruses such as Pf1, M13, and even potato virus X. In the companion paper, we shall attribute the amplitude enhancement of the translational diffusion to the coupling of its anisotropy to the rotational diffusion modes. In order to explain the excessive decay rates in the fast component, we need to consider the bending mode of rodlike viruses, especially in the longer viruses such as M13 and Pf1, in addition to the usually expected rotational diffusion modes.
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    Biopolymers 18 (1979), S. 2569-2588 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: We have compared four theoretical effects of rodlike macromolecules with the fast components, i.e., components other than translational diffusion, of our experimental data, which are presented as amplitude autocorrelation functions of electric field scattered from dilute solutions of monodisperse rodlike viruses with lengths from 3300 Å for tobacco mosaic virus to 20,000 Å for Pf1. The four effects are (1) the optic anisotropy treated by Aragón and Pecora, (2) coupled translational-rotational diffusion due to anisotropy in translational mobility recently reformulated by Gierke, (3) anisotropic rotational diffusion with respect to the direction of translational displacement first discussed by Berne and Pecora, and (4) the bending mode of a rod by Fujime and Maruyama. We show that both the first and second effects are required to explain the enhancement of amplitude of the translational diffusion at the expense of fast components. The experimental decay rates of the fast component exceed that of the rotational diffusions. In order to explain the excessive decay rate in the fast component, we need to include a minute amount (∼1%) of bending mode of rodlike viruses, especially in longer viruses such as M13 and Pf1.
    Additional Material: 1 Ill.
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  • 98
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979), S. 2607-2623 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: The previous report that poly(L-glutamic acid) exhibits doubled resonances in the helix-coil transition region by either proton or carbon-13 nmr resolves the question of whether or not this behavior is limited to uncharged polypeptides in organic solvents, as had been previously thought. In the present work, we show that the underlying principle causing this anomalous double-peak behavior is due to molecular-weight polydispersity of the sample. The molecular-weight range in which this phenomenon is observed is largely dependent on the values of σ, the nucleation or cooperativity factor. The principles developed are shown to encompass all classes of polypeptides in a very natural way and to explain the key experimental data in the literature.
    Additional Material: 10 Ill.
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  • 99
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979), S. 2589-2606 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Notes: Empirical conformational energy calculations with the use of ECEPP energy functions have been carried out for linear dipeptides H-X-L-Pro-OH, with X = Gly, L-Ala, D-Ala, L-Leu, D-Leu, L-Phe, and D-Phe, in different states of protonation of the end groups. The results of these calculations are compared with the previously reported experimental equilibrium populations for the cis and trans isomers of the X-Pro bond in the different species. For all the protonation states of the seven dipeptides, the calculated nonbonded interactions and the conformational entropy term lead to a preference of the trans forms over the cis isomers by at least 1 kcal/mol. The electrostatic interactions stabilize the cis conformations in all species except the cationic forms of the D,L-peptides, and it could further be shown that only the carbonyl group of X and the two end groups contribute significantly to the total electrostatic energy. One of the principal results of the experimental studies, i.e., the occurrence of 5-15% cis-proline in all the peptides with an uncharged C-terminus, was corroborated by our investigation of the cationic species. A detailed assessment of the electrostatic contribution to the total energy of the different conformations of H-Gly-L-Pro-OH indicates that the standard ECEPP parameters tend to overestimate the electrostatic interactions in aqueous solutions of the X-Pro dipeptides.
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  • 100
    Electronic Resource
    Electronic Resource
    New York : Wiley-Blackwell
    Biopolymers 18 (1979) 
    ISSN: 0006-3525
    Keywords: Chemistry ; Polymer and Materials Science
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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