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  • Other Sources  (225)
  • Nature Publishing Group  (155)
  • AGU  (68)
  • American Institute of Physics (AIP)
  • Institute of Electrical and Electronics Engineers (IEEE)
  • PANGAEA
  • 2010-2014  (142)
  • 1985-1989  (43)
  • 1980-1984  (33)
  • 1970-1974  (4)
  • 1965-1969  (3)
  • 1925-1929
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Year
  • 1
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    AGU
    In:  Washington D. C., AGU, vol. 1, pp. 6322, (ISBN 0-521-79203-7)
    Publication Date: 1986
    Keywords: Textbook of geophysics ; Seismics (controlled source seismology) ; Earth model, also for more shallow analyses !
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  • 2
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    AGU
    In:  Professional Paper, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 16, pp. 367-376, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Earthquake precursor: Vp/Vs anomalies ; Dual Induction Latero logAT
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  • 3
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    AGU
    In:  Professional Paper, Dynamics of Plate Interiors, Roma, AGU, vol. 1, no. 231, pp. 145-153, (ISBN: 3-540-23712-7)
    Publication Date: 1980
    Keywords: Review article ; Stress
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  • 4
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. Subvol. b, pp. 43-51, (ISBN 0080419208)
    Publication Date: 1981
    Keywords: Seismicity ; Earthquake precursor: prediction research
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  • 5
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    AGU
    In:  Washington D. C., AGU, vol. 14, pp. 6322, (ISBN 0-521-79203-7)
    Publication Date: 1986
    Keywords: Textbook of geophysics ; Seismics (controlled source seismology) ; Earth model, also for more shallow analyses ! ; Reflection seismics
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  • 6
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    AGU
    In:  Washington D. C., AGU, vol. 4, no. 3, pp. 2-203, (ISBN: 3-540-41598-X)
    Publication Date: 1989
    Keywords: Plate tectonics ; Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Stress ; Vanicek
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  • 7
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    AGU
    In:  Washington D.C., AGU, vol. 6, no. XVI:, pp. 227-235, (ISBN 3-342-00685-4)
    Publication Date: 1986
    Keywords: Stress ; Earthquake precursor: statistical anal. of seismicity ; Source parameters ; Stress drop
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  • 8
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    AGU
    In:  Washington D.C., AGU, vol. 6, no. Publ. No. 12, pp. 81-89, (ISBN 0-444-50971-2)
    Publication Date: 1986
    Keywords: Rock mechanics ; Fluids ; Source
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  • 9
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    AGU
    In:  Washington, D.C., AGU, vol. 4, no. Publ. No. 12, pp. 9, (3-540-24165-5, XXVI + 228 p.)
    Publication Date: 1981
    Keywords: Handbook of geophysics ; Earthquake precursor: prediction research ; Earthquake precursor: deformation or strain ; Seismicity ; Seismology
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  • 10
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    AGU
    In:  Washington D. C., AGU, vol. 3, no. ALEX(01)-FR-77-01, AFTAC Contract F08606-76-C-0025, pp. 329, (ISBN 1-903544-06-8)
    Publication Date: 1989
    Keywords: Textbook of geology ; Volcanology ; Earthquake hazard
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  • 11
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    AGU
    In:  Professional Paper, Earthquake Source Mechanics, Washington, D.C., AGU, vol. 6, no. 16, pp. 91-96, (ISBN 1-4020-1729-4)
    Publication Date: 1986
    Keywords: Earthquake precursor: prediction research
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  • 12
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 4, pp. 579-592, (ISBN 0080419208)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Earthquake asperities ; Recurrence of earthquakes ; Fault zone
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  • 13
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Composition, Structure and Dynamics of the Lithosphere-Asthenosphere System, Washington, D.C., AGU, vol. 16, no. Subvol. a, pp. 111-123, (ISBN 0080419208)
    Publication Date: 1987
    Keywords: Review article ; Anisotropy ; Physical properties of rocks
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  • 14
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    AGU
    In:  Professional Paper, Open-File Rept., Chin. Geophys., Washington, D.C., AGU, vol. 2, no. 1, pp. 157-172, (ISBN 0080419208)
    Publication Date: 1982
    Keywords: Earthquake precursor: prediction research ; China
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  • 15
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    AGU
    In:  Bull., Open-File Rept., Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 16, pp. 181-207, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Earthquake precursor: deformation or strain
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  • 16
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    AGU
    In:  Bull., Open-File Rept., Earthquake Source Mechanics, Maurice Ewing Ser., Washington D.C., AGU, vol. 6, no. 16, pp. 209-216, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1986
    Keywords: Seismicity ; Subduction zone ; scaling ; Magnitude ; seismic Moment ; nokms
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  • 17
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    AGU
    In:  Bull., Open-File Rept., Earthquake Source Mechanics, Maurice Ewing Ser., Washington D.C., AGU, vol. 6, no. 16, pp. 157-167, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1986
    Keywords: Fracture ; Fault zone ; Source
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  • 18
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    AGU
    In:  Bull., Open-File Rept., Chin. Geophys., Washington, D.C., AGU, vol. 2, no. 1, pp. 109-138, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1982
    Keywords: Earthquake precursor: prediction research
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  • 19
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    AGU
    In:  Washington, D.C., 341 pp., AGU, vol. 231, no. 3, pp. 2-203, (ISBN 0-470-02298-1)
    Publication Date: 1986
    Keywords: Earthquake precursor: prediction research
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  • 20
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    AGU
    In:  Washington D. C., AGU, vol. 5, no. XVI:, pp. 1-14, (ISBN 0-89871-521-0)
    Publication Date: 1989
    Keywords: Earth model, also for more shallow analyses ! ; Plate tectonics ; Geol. aspects ; Deep seismic sounding (espec. cont. crust)
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  • 21
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    AGU
    In:  Washington, D.C., AGU, vol. 12, no. ALEX(01)-FR-77-01, AFTAC Contract F08606-76-C-0025, pp. 329, (ISBN: 0-444-50309-9)
    Publication Date: 1984
    Keywords: Plate tectonics ; Geomagnetics ; Handbook of geophysics
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  • 22
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    AGU
    In:  Professional Paper, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 16, pp. 543-565, (ISBN 1-4020-1729-4)
    Publication Date: 1981
    Keywords: Earthquake precursor: chemical (Rn, water(-level,...) ; China ; Earthquake precursor: others (animal behav., wobble, tides) ; Earthquake precursor: prediction research
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  • 23
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    AGU
    In:  Professional Paper, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 16, pp. 141-151, (ISBN 1-4020-1729-4)
    Publication Date: 1981
    Keywords: Plate tectonics ; Seismicity ; Volcanology ; Earthquake precursor: prediction research ; Earthquake precursor: statistical anal. of seismicity ; Stefansson
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  • 24
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Origin and Evolution of Sedimentary Basins and Their Energy, Washington, D.C., AGU, vol. 48, no. 4, pp. 65-71, (ISBN 0080419208)
    Publication Date: 1989
    Keywords: Geol. aspects ; Modelling ; Crustal deformation (cf. Earthquake precursor: deformation or strain) ; 8110 ; Tectonophysics ; Continental ; tectonics ; 8165 ; Structural ; geology ; (crustal ; structure ; and ; mechanics) ; 8194 ; Instruments ; and ; techniques
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  • 25
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Plate Tectonics. Selected Papers from Publications of the AGU, Washington, D.C., AGU, vol. 22, no. 4, pp. 444-455, (ISBN 0080419208)
    Publication Date: 1980
    Keywords: Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Plate tectonics
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  • 26
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    AGU
    In:  Chinese Geophysics, Washington, D.C., AGU, vol. 2, no. 2, pp. 383-403, pp. L24604, (ISSN: 1340-4202)
    Publication Date: 1983
    Keywords: Earthquake ; Induced seismicity ; JAPAN
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  • 27
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    AGU
    In:  Washington D. C., AGU, vol. 8, no. XVI:, pp. 1-14, (ISBN: 0-387-30752-4)
    Publication Date: 1989
    Keywords: Data analysis / ~ processing ; Statistical investigations
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  • 28
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    AGU
    In:  Washington D.C., AGU, vol. 6, no. XVI:, pp. 65-70, (ISBN: 3486274473, 2. Auflage 2004, xxiv, 244 Seiten)
    Publication Date: 1986
    Keywords: Friction ; Fault zone ; Elasticity
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  • 29
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    AGU
    In:  Washington D.C., AGU, vol. 6, no. 22, pp. 71-80, (ISBN 0-87590-422-X)
    Publication Date: 1986
    Keywords: Fracture ; Inelastic ; Fault zone ; Source mechanics
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  • 30
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    AGU
    In:  Washington, D.C., AGU, vol. Developments in Petroleum Science vol. 15B, no. Publ. No. 12, pp. 9, (ISBN: 3-540-31080-0)
    Publication Date: 1988
    Keywords: Handbook of physics ; Handbook of mineralogy ; Physical properties of rocks ; Mineralogy
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  • 31
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    AGU
    In:  Washington D. C., AGU, vol. 8, no. Publ. No. 12, pp. 9, (3-540-24165-5, XXVI + 228 p.)
    Publication Date: 1989
    Keywords: Earth model, also for more shallow analyses ! ; Plate tectonics
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  • 32
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    AGU
    In:  Professional Paper, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 16, pp. 348-356, (ISBN 0080419208)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Seismicity ; Earthquake precursor: stresses ; Fault plane solution, focal mechanism ; Source
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  • 33
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    AGU
    In:  Professional Paper, Earthquake Source Mechanics, Washington, D.C., AGU, vol. 6, no. 16, pp. 237-245, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1986
    Keywords: Earthquake precursor: prediction research ; Stress drop ; Seismic arrays ; Source parameters
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  • 34
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. XVI:, pp. 457-472, (ISBN: 3-540-23712-7)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Earthquake precursor: deformation or strain ; Geodesy
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  • 35
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 1, pp. 1-19, (ISBN: 3-540-23712-7)
    Publication Date: 1981
    Keywords: Seismicity ; Earthquake precursor: prediction research ; FROTH ; (abstract)
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  • 36
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Reflection Seismology: A Global Perspective, Washington, D.C., AGU, vol. 13, no. Subvol. a, pp. 167-182, (ISBN 0080419208)
    Publication Date: 1986
    Keywords: Review article ; Deep seismic sounding (espec. cont. crust) ; Refraction seismics ; Muller
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  • 37
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    AGU
    In:  Bull., Polar Proj. OP-O3A4, Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. Subvol. a, pp. 20-28, (ISBN 0080419208)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Earthquake precursor: statistical anal. of seismicity ; FROTH ; (book)
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  • 38
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    AGU
    In:  Bull., Open-File Rept., Geodynamics of the Eastern Pacific Region, Caribbean and Scotia Arcs, Washington, D.C., AGU, vol. 9, no. 1, pp. 113-125, (ISBN 0080419208)
    Publication Date: 1983
    Keywords: Plate tectonics ; Crustal deformation (cf. Earthquake precursor: deformation or strain) ; Subduction zone ; Review article ; Cabre
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  • 39
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    AGU
    In:  Bull., Open-File Rept., Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 1, pp. 422-440, (ISBN 0080419208)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Geodesy ; Earthquake precursor: deformation or strain
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  • 40
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    AGU
    In:  Professional Paper, Open-File Rept., Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 16, pp. 209-216, (ISBN 0080419208)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Earthquake precursor: deformation or strain
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  • 41
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    AGU
    In:  Bull., Open-File Rept., Earthquake Source Mechanics, Washington D. C., AGU, vol. 6, no. 16, pp. 147-155, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1986
    Keywords: FractureT ; Fault zone ; Geol. aspects
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  • 42
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    AGU
    In:  Bull., Open-File Rept., Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 16, pp. 441-456, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1981
    Keywords: Tectonics ; Earthquake precursor: prediction research ; Earthquake precursor: deformation or strain ; Geodesy
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  • 43
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    AGU
    In:  Bull., Open-File Rept., Earthquake Source Mechanics, Washington, D.C., AGU, vol. 6, no. 1, pp. 131-145, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1986
    Keywords: Earthquake ; Stress ; Geothermics ; CRUST ; Inelastic ; HGROSSER ; FROTH
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  • 44
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    AGU
    In:  Bull., Open-File Rept., Earthquake Prediction, Washington, D. C., AGU, vol. 65, no. 1, pp. 217-247, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1981
    Keywords: Recurrence of earthquakes ; Fault zone ; Earthquake
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  • 45
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    AGU
    In:  Professional Paper, Open-File Rept., Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 2, pp. 117-125, (ISBN 0080419208)
    Publication Date: 1981
    Keywords: Seismicity
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  • 46
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    AGU
    In:  AGU Spring Meeting, S22A-13, Baltimore, AGU, vol. 11, no. CUED/C/Mats/Tr 51, pp. 1414-1415
    Publication Date: 1989
    Keywords: Seismic networks ; Seismic arrays ; Filter- ; Polarization ; Shear waves
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  • 47
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    AGU
    In:  Professional Paper, Open-File Rept., Earthquake Prediction, Washington, D.C., AGU, vol. 4, no. 16, pp. 394-410, (ISBN 1-86239-165-3, vi + 330 pp.)
    Publication Date: 1981
    Keywords: Earthquake precursor: prediction research ; Earthquake precursor: deformation or strain
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  • 48
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    Nature Publishing Group
    In:  Nature Reviews Microbiology, 12 (10). pp. 686-698.
    Publication Date: 2020-06-23
    Description: Marine phytoplankton blooms are annual spring events that sustain active and diverse bloom-associated bacterial populations. Blooms vary considerably in terms of eukaryotic species composition and environmental conditions, but a limited number of heterotrophic bacterial lineages — primarily members of the Flavobacteriia, Alphaproteobacteria and Gammaproteobacteria — dominate these communities. In this Review, we discuss the central role that these bacteria have in transforming phytoplankton-derived organic matter and thus in biogeochemical nutrient cycling. On the basis of selected field and laboratory-based studies of flavobacteria and roseobacters, distinct metabolic strategies are emerging for these archetypal phytoplankton-associated taxa, which provide insights into the underlying mechanisms that dictate their behaviours during blooms.
    Type: Article , PeerReviewed
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  • 49
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    Nature Publishing Group
    In:  Nature Geoscience, 6 (8). pp. 608-612.
    Publication Date: 2017-10-24
    Description: Owing to the turbulent nature of the ocean, mesoscale eddies are omnipresent. The impact of these transitory and approximately circular sea surface temperature fronts on the overlying atmosphere is not well known. Stationary fronts such as the Gulf Stream have been reported to lead to pronounced atmospheric changes1, 2. However, the impact of transient ocean eddies on the atmosphere has not been determined systematically, except on winds and to some extent clouds3, 4, 5, 6. Here, we examine the atmospheric conditions associated with over 600,000 individual eddies in the Southern Ocean, using satellite data. We show that ocean eddies locally affect near-surface wind, cloud properties and rainfall. The observed pattern of atmospheric change is consistent with a mechanism in which sea surface temperature anomalies associated with the oceanic eddies modify turbulence in the atmospheric boundary layer. In the case of cyclonic eddies, this modification triggers a slackening of near-surface winds, a decline in cloud fraction and water content, and a reduction in rainfall. We conclude that transient mesoscale ocean structures can significantly affect much larger atmospheric low-pressure systems that swiftly pass by at the latitudes investigated.
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  • 50
    Publication Date: 2017-03-27
    Description: An influence of solar irradiance variations on Earth’s surface climate has been repeatedly suggested, based on correlations between solar variability and meteorological variables1. Specifically, weaker westerly winds have been observed in winters with a less active sun, for example at the minimum phase of the 11-year sunspot cycle2, 3, 4. With some possible exceptions5, 6, it has proved difficult for climate models to consistently reproduce this signal7, 8. Spectral Irradiance Monitor satellite measurements indicate that variations in solar ultraviolet irradiance may be larger than previously thought9. Here we drive an ocean–atmosphere climate model with ultraviolet irradiance variations based on these observations. We find that the model responds to the solar minimum with patterns in surface pressure and temperature that resemble the negative phase of the North Atlantic or Arctic Oscillation, of similar magnitude to observations. In our model, the anomalies descend through the depth of the extratropical winter atmosphere. If the updated measurements of solar ultraviolet irradiance are correct, low solar activity, as observed during recent years, drives cold winters in northern Europe and the United States, and mild winters over southern Europe and Canada, with little direct change in globally averaged temperature. Given the quasiregularity of the 11-year solar cycle, our findings may help improve decadal climate predictions for highly populated extratropical regions
    Type: Article , PeerReviewed
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  • 51
    Publication Date: 2017-06-20
    Description: The anaerobic oxidation of methane (AOM) with sulphate, an area currently generating great interest in microbiology, is accomplished by consortia of methanotrophic archaea (ANME) and sulphate-reducing bacteria1, 2. The enzyme activating methane in methanotrophic archaea has tentatively been identified as a homologue of methyl-coenzyme M reductase (MCR) that catalyses the methane-forming step in methanogenic archaea3, 4. Here we report an X-ray structure of the 280 kDa heterohexameric ANME-1 MCR complex. It was crystallized uniquely from a protein ensemble purified from consortia of microorganisms collected with a submersible from a Black Sea mat catalysing AOM with sulphate4. Crystals grown from the heterogeneous sample diffract to 2.1 Å resolution and consist of a single ANME-1 MCR population, demonstrating the strong selective power of crystallization. The structure revealed ANME-1 MCR in complex with coenzyme M and coenzyme B, indicating the same substrates for MCR from methanotrophic and methanogenic archaea. Differences between the highly similar structures of ANME-1 MCR and methanogenic MCR include a F430 modification, a cysteine-rich patch and an altered post-translational amino acid modification pattern, which may tune the enzymes for their functions in different biological contexts.
    Type: Article , PeerReviewed
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  • 52
    Publication Date: 2017-08-28
    Description: Iron limits phytoplankton growth and hence the biological carbon pump in the Southern Ocean1. Models assessing the impacts of iron on the global carbon cycle generally rely on dust input and sediment resuspension as the predominant sources2, 3. Although it was previously thought that most iron from deep-ocean hydrothermal activity was inaccessible to phytoplankton because of the formation of particulates4, it has been suggested that iron from hydrothermal activity5, 6, 7 may be an important source of oceanic dissolved iron8, 9, 10, 11, 12, 13. Here we use a global ocean model to assess the impacts of an annual dissolved iron flux of approximately 9×108 mol, as estimated from regional observations of hydrothermal activity11, 12, on the dissolved iron inventory of the world’s oceans. We find the response to the input of hydrothermal dissolved iron is greatest in the Southern Hemisphere oceans. In particular, observations of the distribution of dissolved iron in the Southern Ocean3 (Chever et al., manuscript in preparation; Bowie et al., manuscript in preparation) can be replicated in our simulations only when our estimated iron flux from hydrothermal sources is included. As the hydrothermal flux of iron is relatively constant over millennial timescales14, we propose that hydrothermal activity can buffer the oceanic dissolved iron inventory against shorter-term fluctuations in dust deposition.
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  • 53
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    Nature Publishing Group
    In:  Nature Reviews Microbiology, 9 (7). pp. 499-508.
    Publication Date: 2020-06-23
    Description: Biological N2 fixation is an important part of the marine nitrogen cycle as it provides a source of new nitrogen that can support biological carbon export and sequestration. Research in the past decade has focused on determining the patterns of distribution and abundance of diazotrophs, defining the environmental features leading to these patterns and characterizing the factors that constrain marine N2 fixation overall. In this Review, we describe how variations in the deposition of iron from dust to different ocean basins affects the limiting nutrient for N2 fixation and the distribution of different diazotrophic species. However, many questions remain about marine N2 fixation, including the role of temperature, fixed nitrogen species, CO2 and physical forcing in controlling N2 fixation, as well as the potential for heterotrophic N2 fixation.
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  • 54
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    AGU
    In:  Journal of Geophysical Research, 78 (17). pp. 3340-3355.
    Publication Date: 2020-07-24
    Description: The application of plagioclase geothermometry to plagioclase-bearing volcanic ash layers and to the glassy margins of pillow basalts from the fast-spreading East Pacific rise, the moderately spreading Gorda and Juan de Fuca ridges, and the slow-spreading mid-Atlantic ridge has shown that magma temperatures, as well as average An contents of plagioclases, are negatively correlated with spreading rates. A detailed investigation of the major element chemistry of volcanic glasses from each of these areas suggests that the observed consistent element-element covariances among individual populations of samples have been caused by fractional crystallization of the magmas. The regularity of chemical variation and the similarity of magma temperatures within each population of samples suggest that magmas ascending from beneath each ridge have had similar evolutionary histories. Vector analysis of the chemical data of all samples of volcanic glasses indicate that each population of samples from each of the spreading centers is chemically distinct, even though all samples have been subjected to similar amounts of fractional crystallization. The compositional distinctiveness of each population of oceanic tholeiites probably reflects differences in the depths at which the magmas were generated. Calculated magma temperatures and geothermal gradients calculated from published heat flow measurements can be used to estimate depths of magma generation of about 16 km beneath the East Pacific rise and about 23 km beneath the mid-Atlantic ridge.
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  • 55
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    Nature Publishing Group
    In:  Nature Geoscience, 4 (6). pp. 398-403.
    Publication Date: 2017-05-11
    Description: The Pacific sector of Antarctica, including both the Antarctic Peninsula and continental West Antarctica, has experienced substantial warming in the past 30 years. An increase in the circumpolar westerlies, owing in part to the decline in stratospheric ozone concentrations since the late 1970s, may account for warming trends in the peninsula region in austral summer and autumn. The more widespread warming in continental West Antarctica (Ellsworth Land and Marie Byrd Land) occurs primarily in austral winter and spring, and remains unexplained. Here we use observations of Antarctic surface temperature and global sea surface temperature, and atmospheric circulation data to show that recent warming in continental West Antarctica is linked to sea surface temperature changes in the tropical Pacific. Over the past 30 years, anomalous sea surface temperatures in the central tropical Pacific have generated an atmospheric Rossby wave response that influences atmospheric circulation over the Amundsen Sea, causing increased advection of warm air to the Antarctic continent. General circulation model experiments show that the central tropical Pacific is a critical region for producing the observed high latitude response. We conclude that, by affecting the atmospheric circulation at high southern latitudes, increasing tropical sea surface temperatures may account for West Antarctic warming through most of the twentieth century.
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  • 56
    Publication Date: 2020-06-24
    Description: The synthetic production of monodisperse single magnetic domain nanoparticles at ambient temperature is challenging. In nature, magnetosomes--membrane-bound magnetic nanocrystals with unprecedented magnetic properties--can be biomineralized by magnetotactic bacteria. However, these microbes are difficult to handle. Expression of the underlying biosynthetic pathway from these fastidious microorganisms within other organisms could therefore greatly expand their nanotechnological and biomedical applications. So far, this has been hindered by the structural and genetic complexity of the magnetosome organelle and insufficient knowledge of the biosynthetic functions involved. Here, we show that the ability to biomineralize highly ordered magnetic nanostructures can be transferred to a foreign recipient. Expression of a minimal set of genes from the magnetotactic bacterium Magnetospirillum gryphiswaldense resulted in magnetosome biosynthesis within the photosynthetic model organism Rhodospirillum rubrum. Our findings will enable the sustainable production of tailored magnetic nanostructures in biotechnologically relevant hosts and represent a step towards the endogenous magnetization of various organisms by synthetic biology.
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  • 57
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    Nature Publishing Group
    In:  Nature Reviews Microbiology, 12 (10). pp. 686-698.
    Publication Date: 2020-06-23
    Description: Marine phytoplankton blooms are annual spring events that sustain active and diverse bloom-associated bacterial populations. Blooms vary considerably in terms of eukaryotic species composition and environmental conditions, but a limited number of heterotrophic bacterial lineages — primarily members of the Flavobacteriia, Alphaproteobacteria and Gammaproteobacteria — dominate these communities. In this Review, we discuss the central role that these bacteria have in transforming phytoplankton-derived organic matter and thus in biogeochemical nutrient cycling. On the basis of selected field and laboratory-based studies of flavobacteria and roseobacters, distinct metabolic strategies are emerging for these archetypal phytoplankton-associated taxa, which provide insights into the underlying mechanisms that dictate their behaviours during blooms.
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  • 58
    Publication Date: 2018-03-02
    Description: RECENT advances in 40Ar/39Ar dating1,2 have made it possible to date individual K-feldspar grains from Pleistocene tephra, a capability that greatly improves the reliability and temporal resolving power of the method. Here we apply these new techniques to the dating of a phonolite tephra from the East Eifel volcanic field in West Germany, which is sandwiched between loess and palaeosol (alfisol) deposits, and which was therefore erupted during the transition from a glacial to an interglacial period. Our age estimate for this transition is 215±4 kyr (1 σ), which has important implications for the marine δ18O timescale and for models of global climate change during the Pleistocene. The results show that single-grain dating can detect and compensate for the large quantities of xenocrystic contaminants which are found in many tephra deposits. This technique could be used to date the tephra layers found in marine sediment cores and the results could greatly enhance the reliability of the marine δ18O timescale for more rigorous Fourier analysis testing of the Milankovitch hypothesis.
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  • 59
    Publication Date: 2018-04-03
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  • 60
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    Nature Publishing Group
    In:  Nature Reviews Immunology, 12 (2). pp. 89-100.
    Publication Date: 2020-06-23
    Description: Vertebrates have evolved a sophisticated adaptive immune system that relies on an almost infinite diversity of antigen receptors that are clonally expressed by specialized immune cells that roam the circulatory system. These immune cells provide vertebrates with extraordinary antigen-specific immune capacity and memory, while minimizing self-reactivity. Plants, however, lack specialized mobile immune cells. Instead, every plant cell is thought to be capable of launching an effective immune response. So how do plants achieve specific, self-tolerant immunity and establish immune memory? Recent developments point towards a multilayered plant innate immune system comprised of self-surveillance, systemic signalling and chromosomal changes that together establish effective immunity.
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  • 61
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    AGU
    In:  Journal of Geophysical Research: Solid Earth, 91 (B12). pp. 12711-12721.
    Publication Date: 2020-07-23
    Description: Four major NE trending postglacial volcanic and tectonic fissure swarms (volcanic systems) occur on the Reykjanes Peninsula, and the westernmost three are the main subject of this paper. Two main types of basaltic volcanoes are associated with these systems: shields of picrite and olivine tholeiite and tholeiite fissures. The average volume of 26 shields is 1.11 km3, and the total production is 29 km3, whereas the corresponding figures for lavas from 101 volcanic fissures are 0.11 km3 and 11 km3. The tectonic fractures are either tension fractures or normal faults of widths up to 20 m, throws up to 10 m, and lengths up to several kilometers. The volcanism and tectonics can be explained by magmatic pressure changes in ellipsoidal magma reservoirs located beneath the fissure swarms. A magmatic pressure increase of the order of 10 MPa is found to be sufficient for an excess uplift of the order of several meters, which is all that is needed to account for the fractures and measured dilation in the fissure swarms. It is concluded that most shield volcanoes, in particular the picrite shields and the large olivine tholeiite shields, formed during the early postglacial period and that their formation was facilitated by the stress field generated as a result of rapid uplift and bending of the crust above the reservoirs. Since that time the reservoirs have become independent systems, the volcanism has been confined to fissures, and the production rate has decreased significantly. During typical fissure eruptions (0.015 km3), only the uppermost several hundred meters of the source reservoir, depending on its magma content, supply magma to the eruption.
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  • 62
    Publication Date: 2017-07-18
    Description: To survey hepatitis B virus (HBV) integration in liver cancer genomes, we conducted massively parallel sequencing of 81 HBV-positive and 7 HBV-negative hepatocellular carcinomas (HCCs) and adjacent normal tissues. We found that HBV integration is observed more frequently in the tumors (86.4%) than in adjacent liver tissues (30.7%). Copy-number variations (CNVs) were significantly increased at HBV breakpoint locations where chromosomal instability was likely induced. Approximately 40% of HBV breakpoints within the HBV genome were located within a 1,800-bp region where the viral enhancer, X gene and core gene are located. We also identified recurrent HBV integration events (in ≥4 HCCs) that were validated by RNA sequencing (RNA-seq) and Sanger sequencing at the known and putative cancer-related TERT, MLL4 and CCNE1 genes, which showed upregulated gene expression in tumor versus normal tissue. We also report evidence that suggests that the number of HBV integrations is associated with patient survival.
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  • 63
    Publication Date: 2017-06-16
    Description: Climate warming at the end of the last glaciation caused ice caps on Icelandic volcanoes to retreat. Removal of surface ice load is thought to have decreased pressures in the underlying mantle, triggering decompression melting, enhanced magma generation and increased volcanic activity1–3. Present-day climate change could have the same effect, although there may be a time lag of hundreds of years between magma generation and eruption4,5. However, in addition to increased magma generation, pressure changes associated with ice retreat should also alter the capacity for storing magma within the crust. Here we use a numerical model to evaluate the effect of the current decrease in ice load on magma storage in the crust at the Kverkfjöll volcanic system, located partially beneath Iceland’s largest ice cap. We compare the model results with radar and global positioning system measurements of surface displacement and changes in crustal stress between 2007 and 2008, during the intrusion of a deep dyke at Upptyppingar. We find that although the main component of stress recorded during dyke intrusion relates to plate extension, another component of stress is consistent with the stress field caused by the retreating ice cap. We conclude that the retreating ice cap led to enhanced capture of magma within the crust. We suggest that ice-cap retreat can promote magma storage, rather than eruption, at least in the short term.
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  • 64
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    Nature Publishing Group
    In:  Nature Geoscience, 3 (6). pp. 412-416.
    Publication Date: 2017-12-21
    Description: The elemental stoichiometry of sea water and particulate organic matter is remarkably similar. This observation led Redfield to hypothesize that the oceanic ratio of nitrate to phosphate is controlled by the remineralization of phytoplankton biomass1. The Redfield ratio is used universally to quantitatively link the marine nitrogen and phosphorus cycles in numerous biogeochemical applications2,3,4. Yet, empirical and theoretical studies show that the ratio of nitrogen to phosphorus in phytoplankton varies greatly with taxa5,6 and growth conditions7,8,9. Here we present a dynamic five-box ecosystem model showing that non-Redfield utilization of dissolved nitrogen and phosphorus by non-nitrogen-fixing phytoplankton controls the magnitude and distribution of nitrogen fixation. In our simulations, systems dominated by rapidly growing phytoplankton with low nitrogen to phosphorus uptake ratios reduce the phosphorus available for nitrogen fixation. In contrast, in systems dominated by slow-growing phytoplankton with high nitrogen to phosphorus uptake ratios nitrogen deficits are enhanced, and nitrogen fixation is promoted. We show that estimates of nitrogen fixation are up to fourfold too high when non-Redfield uptake stoichiometries are ignored. We suggest that the relative abundance of fast- and slow-growing phytoplankton controls the amount of new nitrogen added to the ocean.
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  • 65
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    Nature Publishing Group
    In:  Nature Methods, 10 (9). pp. 881-884.
    Publication Date: 2020-06-24
    Description: The exponentially increasing number of sequenced genomes necessitates fast, accurate, universally applicable and automated approaches for the delineation of prokaryotic species. We developed specI (species identification tool; http://www.bork.embl.de/software/specI/), a method to group organisms into species clusters based on 40 universal, single-copy phylogenetic marker genes. Applied to 3,496 prokaryotic genomes, specI identified 1,753 species clusters. Of 314 discrepancies with a widely used taxonomic classification, 〉62% were resolved by literature support.
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  • 66
    Publication Date: 2018-01-05
    Description: There have been decades, such as 2000–2009, when the observed globally averaged surface-temperature time series shows little increase or even a slightly negative trend1 (a hiatus period). However, the observed energy imbalance at the top-of-atmosphere for this recent decade indicates that a net energy flux into the climate system of about 1 W m−2 (refs 2, 3) should be producing warming somewhere in the system4,5. Here we analyse twenty-first-century climate-model simulations that maintain a consistent radiative imbalance at the top-of-atmosphere of about 1 W m−2 as observed for the past decade. Eight decades with a slightly negative global mean surface-temperature trend show that the ocean above 300 m takes up significantly less heat whereas the ocean below 300 m takes up significantly more, compared with non-hiatus decades. The model provides a plausible depiction of processes in the climate system causing the hiatus periods, and indicates that a hiatus period is a relatively common climate phenomenon and may be linked to La Niña-like conditions.
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  • 67
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    Nature Publishing Group
    In:  Nature Immunology, 12 (1). pp. 5-9.
    Publication Date: 2020-06-25
    Description: The fields of immunology, microbiology, nutrition and metabolism are rapidly converging. Here we expand on a diet-microbiota model as the basis for the greater incidence of asthma and autoimmunity in developed countries.
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  • 68
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    Nature Publishing Group
    In:  Nature Immunology, 14 (7). pp. 676-684.
    Publication Date: 2020-06-25
    Description: The mammalian gastrointestinal tract, the site of digestion and nutrient absorption, harbors trillions of beneficial commensal microbes from all three domains of life. Commensal bacteria, in particular, are key participants in the digestion of food, and are responsible for the extraction and synthesis of nutrients and other metabolites that are essential for the maintenance of mammalian health. Many of these nutrients and metabolites derived from commensal bacteria have been implicated in the development, homeostasis and function of the immune system, suggesting that commensal bacteria may influence host immunity via nutrient- and metabolite-dependent mechanisms. Here we review the current knowledge of how commensal bacteria regulate the production and bioavailability of immunomodulatory, diet-dependent nutrients and metabolites and discuss how these commensal bacteria–derived products may regulate the development and function of the mammalian immune system.
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  • 69
    Publication Date: 2020-06-25
    Description: To the Editor: Mass spectrometry–based proteomics has become an important component of biological research. Numerous proteomics methods have been developed to identify and quantify the proteins in biological and clinical samples1, identify pathways affected by endogenous and exogenous perturbations2 and characterize protein complexes3. Despite successes, the interpretation of vast proteomics data…
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  • 70
    Publication Date: 2016-04-11
    Description: Marine Upper Jurassic sediments have recently been reported from South Africa (Knysna Outlier, Cape Province) for the first time1. They occur as shallow water, sandy clays (Brenton Beds) in association with terrestrial/fluviatile conglomerates and sandstones, which were deposited in an approximately east-west elongate intermontane basin between the Cape Fold mountains (formed of Lower Palaeozoic sediments). Post-Cretaceous erosion has reduced the original deposits to a series of small, isolated outliers, only two of which have been reported to contain marine sediments (Knysna, lower Upper Jurassic; Algoa, Valanginian2) (Fig. 1). Extensive Neocomian-Maas-trichtian outcrops are known from the continental shelf off to the south of South Africa3, and a complete mid-Jurassic to Upper Cretaceous marine succession is suspected on the Agulhas Bank infilling and overlying east-west striking, fault bounded folds of Lower Palaeozoic Cape Supergroup rocks as shown in Fig. 1 (R. V. D., in preparation and refs. 1 and 4).
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  • 71
    Publication Date: 2020-06-25
    Description: In bacteria, foreign nucleic acids are silenced by clustered, regularly interspaced, short palindromic repeats (CRISPR)--CRISPR-associated (Cas) systems. Bacterial type II CRISPR systems have been adapted to create guide RNAs that direct site-specific DNA cleavage by the Cas9 endonuclease in cultured cells. Here we show that the CRISPR-Cas system functions in vivo to induce targeted genetic modifications in zebrafish embryos with efficiencies similar to those obtained using zinc finger nucleases and transcription activator-like effector nucleases.
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  • 72
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    Nature Publishing Group
    In:  Nature, 326 (6111). pp. 373-375.
    Publication Date: 2018-03-02
    Description: Hurricanes and other strong storms can cause important decreases in sea surface temperature by means of vertical mixing within the upper ocean, and by air–sea heat exchange. Here we use satellite-derived infrared images of the western North Atlantic to study sea surface cooling caused by hurricane Gloria (1985). Significant regional variations in sea surface cooling are well correlated with hydrographic conditions. The greatest cooling (up to 5°C) occurred in slope waters north of the Gulf Stream where the seasonal thermocline is shallowest and most compressed; moderate cooling (up to 3 °C) occurred in the open Sargasso Sea where the thermocline is deeper and more diffused; little or no cooling occurred in shallow coastal waters (bottom depth less than 20 m) which were isothermal before the passage of hurricane Gloria. There is a pronounced right-side asymmetry of sea surface cooling with stronger (by a factor of 4) and more extensive (by a factor of 3) cooling found on the right side of the hurricane track. These qualitative results are consistent with the notion that vertical mixing within the upper ocean is the dominant sea surface cooling mechanism of hurricanes.
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  • 73
    Publication Date: 2016-04-11
    Description: There has been concern about recent temperature trends and the future effects of CO2 concentrations in the atmosphere1,2; but instrumental records only cover a few decades to a few centuries and it is essential that proxy data sources, such as pollen spectra from peats and lake sediments, be carefully interpreted as climate records. Several workers have shown statistically significant associations between the modern pollen rain and climatic parameters, an approach that by-passes the recognition of pollen/vegetation units. Statistically defined equations that associate abiotic and biotic elements are called transfer functions. We report here on the application of transfer function equations to nine middle and late Holocene peat and lake sediment sequences from northern Canada (Fig. 1).
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  • 74
    Publication Date: 2016-04-27
    Description: Hydrothermal vents emit sulphur and metals to the ocean1. Particular attention has been paid to hydrothermal fluxes of iron2–4, a limiting micronutrient of marine primary production5. Vent-derived ironwas previously thought to rapidly oxidize and precipitate around vents6. However, organic matter can bind to and stabilize dissolved and particulate iron in hydrothermal plumes7–9, facilitating its dispersion into the open ocean10. Here, we report measurements of the chemical speciation of sulphide and iron in high-temperature fluids emanating from vents in the East Pacific Rise and the Eastern Lau Spreading Center. We show that pyrite nanoparticles—composed of iron and sulphur—account for up to 10% of the filterable iron (less than 200nm in size) in these fluids. We suggest that these particles form before the discharge of the vent fluid. We estimate that pyrite nanoparticles sink more slowly than larger plume particles, and are more resistant to oxidation than dissolved Fe(II) and FeS.We suggest that the discharge of iron in the form of pyrite nanoparticles increases the probability that vent-derived iron will be transported over long distances in the deep ocean.
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  • 75
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    Nature Publishing Group
    In:  The ISME Journal, 6 (8). pp. 1526-1534.
    Publication Date: 2016-04-29
    Description: The microenvironmental dynamics of the microbial mat of black band disease (BBD) and its less virulent precursor, cyanobacterial patch (CP), were extensively profiled using microsensors under different light intensities with respect to O(2), pH and H(2)S. BBD mats exhibited vertical stratification into an upper phototrophic and lower anoxic and sulphidic zone. At the progression front of BBD lesions, high sulphide levels up to 4977 μM were measured in darkness along with lower than ambient levels of pH (7.43±0.20). At the base of the coral-BBD microbial mat, conditions were hypoxic or anoxic depending on light intensity exposure. In contrast, CP mats did not exhibit strong microchemical stratification with mostly supersaturated oxygen conditions throughout the mats at all light intensities and with levels of pH generally higher than in BBD. Two of three replicate CP mats were devoid of sulphide, while the third replicate showed only low levels of sulphide (up to 42 μM) present in darkness and at intermediate light levels. The level of oxygenation and sulphide correlated well with lesion migration rates, that is virulence of the mats, which were greater in BBD than in CP. The results suggest that biogeochemical microgradients of BBD shaped by the complex microbial community, rather than a defined pathogen, are the major trigger for high virulence and the associated derived coral mortality of this disease.
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  • 76
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    Nature Publishing Group
    In:  Nature, 320 (6058). pp. 107-108.
    Publication Date: 2016-03-01
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  • 77
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    Nature Publishing Group
    In:  Nature, 288 (5788). pp. 260-263.
    Publication Date: 2016-03-01
    Description: Organic detritus passing from the sea surface through the water column to the sea floor controls nutrient regeneration, fuels benthic life and affects burial of organic carbon in the sediment record. Particle trap systems have enabled the first quantification of this important process. The results suggest that the dominant mechanism of vertical transport is by rapid settling of rare large particles, most likely of faecal pellets or marine snow of the order of 〉200 μm in diameter, whereas the more frequent small particles have an insignificant role in vertical mass flux4–6. The ultimate source of organic detritus is biological production in surface waters of the oceans. I determine here an empirical relationship that predicts organic carbon flux at any depth in the oceans below the base of the euphotic zone as a function of the mean net primary production rate at the surface and depth-dependent consumption. Such a relationship aids in estimating rates of decay of organic matter in the water column, benthic and water column respiration of oxygen in the deep sea and burial of organic carbon in the sediment record.
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  • 78
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    Nature Publishing Group
    In:  Nature Geoscience, 3 (8). pp. 537-541.
    Publication Date: 2015-06-02
    Description: Concerns about the slow pace of climate mitigation have led to renewed dialogue about solar-radiation management, which could be achieved by adding reflecting aerosols to the stratosphere1, 2, 3, 4, 5, 6. Modelling studies suggest that solar-radiation management could produce stabilized global temperatures and reduced global precipitation4, 5, 6. Here we present an analysis of regional differences in a climate modified by solar-radiation management, using a large-ensemble modelling experiment that examines the impacts of 54 scenarios for global temperature stabilization. Our results confirm that solar-radiation management would generally lead to less extreme temperature and precipitation anomalies, compared with unmitigated greenhouse gas emissions. However, they also illustrate that it is physically not feasible to stabilize global precipitation and temperature simultaneously as long as atmospheric greenhouse gas concentrations continue to rise. Over time, simulated temperature and precipitation in large regions such as China and India vary significantly with different trajectories for solar-radiation management, and they diverge from historical baselines in different directions. Hence, it may not be possible to stabilize the climate in all regions simultaneously using solar-radiation management. Regional diversity in the response to different levels of solar-radiation management could make consensus about the optimal level of geoengineering difficult, if not impossible, to achieve.
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  • 79
    Publication Date: 2016-05-25
    Description: Marine sponges are well known for their associations with highly diverse, yet very specific and often highly similar microbiota. The aim of this study was to identify potential bacterial sub-populations in relation to sponge phylogeny and sampling sites and to define the core bacterial community. 16S ribosomal RNA gene amplicon pyrosequencing was applied to 32 sponge species from eight locations around the world's oceans, thereby generating 2567 operational taxonomic units (OTUs at the 97% sequence similarity level) in total and up to 364 different OTUs per sponge species. The taxonomic richness detected in this study comprised 25 bacterial phyla with Proteobacteria, Chloroflexi and Poribacteria being most diverse in sponges. Among these phyla were nine candidate phyla, six of them found for the first time in sponges. Similarity comparison of bacterial communities revealed no correlation with host phylogeny but a tropical sub-population in that tropical sponges have more similar bacterial communities to each other than to subtropical sponges. A minimal core bacterial community consisting of very few OTUs (97%, 95% and 90%) was found. These microbes have a global distribution and are probably acquired via environmental transmission. In contrast, a large species-specific bacterial community was detected, which is represented by OTUs present in only a single sponge species. The species-specific bacterial community is probably mainly vertically transmitted. It is proposed that different sponges contain different bacterial species, however, these bacteria are still closely related to each other explaining the observed similarity of bacterial communities in sponges in this and previous studies. This global analysis represents the most comprehensive study of bacterial symbionts in sponges to date and provides novel insights into the complex structure of these unique associations.
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  • 80
    Publication Date: 2015-07-03
    Description: In this study, we present a single-cell genomics approach for the functional characterization of the candidate phylum Poribacteria, members of which are nearly exclusively found in marine sponges. The microbial consortia of the Mediterranean sponge Aplysina aerophoba were singularized by fluorescence-activated cell sorting, and individual microbial cells were subjected to phi29 polymerase-mediated 'whole-genome amplification'. Pyrosequencing of a single amplified genome (SAG) derived from a member of the Poribacteria resulted in nearly 1.6 Mb of genomic information distributed among 554 contigs analyzed in this study. Approximately two-third of the poribacterial genome was sequenced. Our findings shed light on the functional properties and lifestyle of a possibly ancient bacterial symbiont of marine sponges. The Poribacteria are mixotrophic bacteria with autotrophic CO(2)-fixation capacities through the Wood-Ljungdahl pathway. The cell wall is of Gram-negative origin. The Poribacteria produce at least two polyketide synthases (PKSs), one of which is the sponge-specific Sup-type PKS. Several putative symbiosis factors such as adhesins (bacterial Ig-like domains, lamininin G domain proteins), adhesin-related proteins (ankyrin, fibronectin type III) and tetratrico peptide repeat domain-encoding proteins were identified, which might be involved in mediating sponge-microbe interactions. The discovery of genes coding for 24-isopropyl steroids implies that certain fossil biomarkers used to date the origins of metazoan life on earth may possibly be of poribacterial origin. Single-cell genomic approaches, such as those shown herein, contribute to a better understanding of beneficial microbial consortia, of which most members are, because of the lack of cultivation, inaccessible by conventional techniques.
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  • 81
    Publication Date: 2015-09-07
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  • 82
    Publication Date: 2020-07-23
    Description: The Denmark Strait overflow provides about half of the total dense water overflow from the Nordic Seas into the North Atlantic Ocean. The velocity of the overflow has been monitored in the Strait with two moored Acoustic Doppler Current Profilers since 1996 with several interruptions due to mooring losses or instrument failure. So far, overflow transports were only calculated when data from both moorings were available. In this work, we introduce a linear model to fill gaps in the time series when data from only one instrument is available. The mean overflow transport is 3.4 Sv and exhibits a variance of 2.0 Sv2. No significant trend was detected in the time series. The highest variability in the transport is associated with the passage of mesoscale eddies with time scales of 2–10 days (associated with a variance of 1.5 Sv2). Seasonal variability is weak and explains less than 5% of the variance in all time series, which is in contrast to the strong seasonal cycle found in high resolution model simulations. Interannual variability is on the order of 10% of the mean. A relation to atmospheric forcing such as the local wind stress curl, as well as to larger scale phenomena, e.g. the North Atlantic Oscillation, is not detected. Since 2005 data from moored temperature, conductivity and pressure recorders have been available as well, monitoring the hydrographic variability at the bottom of Denmark Strait. In recent years the temperature time series of the Denmark Strait overflow revealed a cooling, while the salinity stayed nearly constant.
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  • 83
    Publication Date: 2015-09-28
    Description: Abyssal temperature and velocity observations performed within the framework of the Neutrino Mediterranean Observatory, a project devoted to constructing a km3-scale underwater telescope for the detection of high-energy cosmic neutrinos, demonstrate cross-fertilization between subnuclear physics and experimental oceanography. Here we use data collected south of Sicily in the Ionian abyssal plain of the Eastern Mediterranean (EM) basin to show for the first time that abyssal vortices exist in the EM, at depths exceeding 2,500 m. The eddies consist of chains of near-inertially pulsating mesoscale cyclones/anticyclones. They are embedded in an abyssal current flowing towards North-Northwest. The paucity of existing data does not allow for an unambiguous determination of the vortex origin. A local generation mechanism seems probable, but a remote genesis cannot be excluded a priori. The presence of such eddies adds further complexity to the discussion of structure and evolution of water masses in the EM.
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  • 84
    Publication Date: 2020-07-23
    Description: This study presents aspects of the spatial and temporal variability of abyssal water masses in the Ionian Sea, as derived from recent temperature, salinity, dissolved oxygen and velocity observations and from comparisons between these and former observations. Previous studies showed how in the Southern Adriatic Sea the Adriatic Deep Water (AdDW) became fresher (ΔS ≈ −0.08) and colder (ΔT ≈ −0.1°C) after experiencing warming and salinification between 2003 and 2007. Our data, collected from October 2009 to July 2010 from two bottom moorings, one within the Strait of Otranto and the other in the northern Ionian, confirm this tendency: a bottom vein of southward-flowing AdDW, whose temperature and salinity continuously decreased during the observation time, was detected there. Typically, the vein travel time between the two stations ranged between 45 and 50 days. This gave us a temporal estimate for AdDW anomaly propagation towards the Ionian abyss from their Adriatic generation region. The density excess of the observed vein was always enough to enable its existence as a bottom-arrested current. This evidence confirms that, at that time (2009 and 2010), the Adriatic Sea was greatly contributing to the formation of Eastern Mediterranean Deep Water (EMDW), the bottom water of the Eastern Mediterranean. Hence, based on these results and on the evidence that, from 2003 to 2009, abyssal Ionian waters became saltier and warmer under the time-lagged influence of AdDW, possible future changes in the EMDW characteristics, as a response to Adriatic variability, are discussed.
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  • 85
    Publication Date: 2016-05-25
    Description: Salinity is a major factor controlling the distribution of biota in aquatic systems, and most aquatic multicellular organisms are either adapted to life in saltwater or freshwater conditions. Consequently, the saltwater–freshwater mixing zones in coastal or estuarine areas are characterized by limited faunal and floral diversity. Although changes in diversity and decline in species richness in brackish waters is well documented in aquatic ecology, it is unknown to what extent this applies to bacterial communities. Here, we report a first detailed bacterial inventory from vertical profiles of 60 sampling stations distributed along the salinity gradient of the Baltic Sea, one of world's largest brackish water environments, generated using 454 pyrosequencing of partial (400 bp) 16S rRNA genes. Within the salinity gradient, bacterial community composition altered at broad and finer-scale phylogenetic levels. Analogous to faunal communities within brackish conditions, we identified a bacterial brackish water community comprising a diverse combination of freshwater and marine groups, along with populations unique to this environment. As water residence times in the Baltic Sea exceed 3 years, the observed bacterial community cannot be the result of mixing of fresh water and saltwater, but our study represents the first detailed description of an autochthonous brackish microbiome. In contrast to the decline in the diversity of multicellular organisms, reduced bacterial diversity at brackish conditions could not be established. It is possible that the rapid adaptation rate of bacteria has enabled a variety of lineages to fill what for higher organisms remains a challenging and relatively unoccupied ecological niche.
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  • 86
    Publication Date: 2015-09-23
    Description: The Denmark Strait overflow water is the largest dense water plume from the Nordic seas to feed the lower limb of the Atlantic Meridional Overturning Circulation. Its primary source is commonly thought to be the East Greenland Current. However, the recent discovery of the North Icelandic Jet—a deep-reaching current that flows along the continental slope of Iceland—has called this view into question. Here we present high-resolution measurements of hydrography and velocity north of Iceland, taken during two shipboard surveys in October 2008 and August 2009. We find that the North Icelandic Jet advects overflow water into the Denmark Strait and constitutes a pathway that is distinct from the East Greenland Current. We estimate that the jet supplies about half of the total overflow transport, and infer that it is the primary source of the densest overflow water. Simulations with an ocean general circulation model suggest that the import of warm, salty water from the North Icelandic Irminger Current and water-mass transformation in the interior Iceland Sea are critical to the formation of the jet. We surmise that the timescale for the renewal of the deepest water in the meridional overturning cell, and its sensitivity to changes in climate, could be different than presently envisaged.
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  • 87
    Publication Date: 2020-07-23
    Description: A high-resolution near-bottom survey has been conducted of the Clipperton transform fault and adjoining segments of the East Pacific Rise (EPR), using the Sea MARC I side-looking sonar system and the Lamont-Doherty Geological Observatory Olympus-based camera system. The transform fault zone (TFZ) is a narrow, well-defined belt of transform-parallel lineaments, which varies along strike from a single, sharp-edged notch to a complex band of subparallel lineaments up to 1 km wide. The TFZ is set within a 5-km-wide band of unusually fine-grained side scan texture, which could indicate nonbasaltic seafloor and/or pervasively sheared and mass-wasted basaltic crust The fine-grained swath is surrounded by constructional volcanic terrain with no hint of strike-slip motion; this observation puts an upper limit of 5 km on the extent of lateral migration of the TFZ in the last 1.5 m.y. Both ridge transform intersections (RTIs) are dominated by bathymetric highs located on the old plate opposite the spreading center. A mantling of fresh-looking constructional volcanic terrain on side scan images suggests that the highs are built in part by recent extrusive and intrusive volcanism; thermal expansion may also play a part. The EPR south of Clipperton has recently experienced extrusion of high effusion rate basalts, burial of faults and fissures by lava flows, and development of vigorous hydrothermal circulation. On the EPR north of Clipperton, the axial zone of faults and fissures tapers toward the transform fault; this may reflect a change in the shape or size of the underlying shallow level magma feeders as a function of distance from the site of magma upwelling or distance toward the transform fault.
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  • 88
    Publication Date: 2015-06-24
    Description: The Messina Strait, that separates peninsular Italy from Sicily, is one of the most seismically active areas of the Mediterranean. The structure and seismotectonic setting of the region are poorly understood, although the area is highly populated and important infrastructures are planned there. New seismic reflection data have identified a number of faults, as well as a crustal scale NE-trending anticline few km north of the strait. These features are interpreted as due to active right-lateral transpression along the north-eastern Sicilian offshore, coexisting with extensional and right-lateral transtensional tectonics in the southern Messina Strait. This complex tectonic network appears to be controlled by independent and overlapping tectonic settings, due to the presence of a diffuse transfer zone between the SE-ward retreating Calabria subduction zone relative to slab advance in the western Sicilian side.
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  • 89
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    AGU
    In:  Journal of Geophysical Research: Solid Earth, 119 (4). pp. 3601-3626.
    Publication Date: 2020-07-23
    Description: The dynamics of accretionary convergent margins are severely influenced by intense deformation and fluid expulsion. To quantify the fluid pressure and fluid flow velocities in the Hellenic subduction system, we set up 2-D hydrogeological numerical models following two seismic reflection lines across the Mediterranean Ridge. These profiles bracket the along-strike variation in wedge geometry: moderate compression and a 〉4 km thick underthrust sequence in the west versus enhanced compression and 〈1 km of downgoing sediment in the center. Input parameters were obtained from preexisting geophysical data, drill cores, and new geotechnical laboratory experiments. A permeability-porosity relationship was determined by a sensitivity analysis, indicating that porosity and intrinsic permeability are small. This hampers the expulsion of fluids and leads to the build up of fluid overpressure in the deeper portion of the wedge and in the underthrust sediment. The loci of maximum fluid pressure are mainly controlled by the compactional fluid source, which generally decreases toward the backstop. However, pore pressure is still high at the decollement level at distances 〈100 km from the deformation front, either by the incorporation of low permeability evaporites or additional compaction of the wedge sediments in the two profiles. In the west, however, formation of a wide accretionary complex is facilitated by high pore pressure zones. When compared to other large accretionary complexes such as Nankai or Barbados, our results not only show broad similarities but also that near-lithostatic pore pressures may be easier to maintain in the Hellenic Arc because of accentuated collision, some underthrust evaporates, and a thicker underthrust sequence.
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  • 90
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    AGU
    In:  Journal of Geophysical Research: Solid Earth, 90 (B8). p. 6709.
    Publication Date: 2020-07-23
    Description: Heat flow in the Imperial Valley and adjacent crystalline rocks is very high (∼140 mW m−2). Gravity and seismic studies suggest the crust is about 23.5 km thick with the lower half composed of gabbro and the upper fourth composed of low-density sediments. Conduction through such a crust resting directly on asthenosphere would give the observed heat flow if there were no extension or sedimentation. However, both processes must have been active, as the Imperial Valley is part of the Salton Trough, a pull-apart sedimentary basin that evolved over the past 4 or 5 m.y. To investigate the interrelations of these factors, we consider a one-dimensional model of basin formation in which the lower crustal gabbro and upper crustal sediments accumulated simultaneously as the crust extended and sedimentation kept pace with isostatic subsidence. For parameters appropriate for the Salton Trough, increasing the extension rate has little effect on surface heat flow because it increases effects of heating by intrusion and cooling by sedimentation in a compensating manner; it does, however, result in progressively increasing lower crustal temperatures. Analytical results suggest that the average extensional strain rate during formation of the trough was ∼20–50%/m.y. (∼1014 s−1); slower rates are inadequate to account for the present composition of the crust, and faster rates would probably cause massive crustal melting. To achieve the differential velocities of the Pacific plate at one end of the trough and North American plate at the other with this strain rate, extension must have, on the average, been distributed (or shifted about) over a spreading region ∼150 km wide. This is about 10 times wider than the present zone of active seismicity, suggesting that the seismic pattern is ephemeral on the time scale for the trough's formation. Narrow spreading zones are typical where sustained spreading is compensated by basaltic intrusion to form the thin oceanic crust, but where such spreading occurs in thicker continental crust, broader zones of distributed extension (with smaller strain rates) may be required for heat balance. The Salton Trough model suggests that distributed extension can be associated with substantial magmatic additions to the crust; their effect on crustal buoyancy has important implications for the relation between crustal extension and subsidence.
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  • 91
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    Nature Publishing Group
    In:  Nature Reviews Genetics, 14 (6). pp. 368-369.
    Publication Date: 2020-06-23
    Description: Population genomics — in which genetic variation across the genome is studied in many individuals — has so far been limited to species for which reference genomes are available. A recent study shows how transcriptomics can be used to extend population genomics research across a far greater range of organisms. This advance promises important new insights int…
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  • 92
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    Nature Publishing Group
    In:  Nature Geoscience, 3 (4). pp. 286-292.
    Publication Date: 2016-02-16
    Description: The growth of oceanic plates at mid-ocean ridges, crustal accretion, occurs by a combination of magmatic and tectonic processes. Magmatic processes along ridges spreading at fast, intermediate and slowrates, continually add volcanic material to a centrally located spreading axis. This creates a narrowband of young volcanic rocks. However, at ridges spreading at ultraslow rates, diminished volcanism allows entire blocks of mantle to spread on the sea floor by tectonic processes. Remote imaging has advanced our observational understanding of crustal accretion, but temporal constraints are required to quantitatively understand ultraslow-spreading ridge construction. Here, we use U-series eruption ages of volcanic rocks collected from the ultraslow-spreading Southwest Indian Ridge. Unexpectedly, we find young volcanic eruption ages that are broadly dispersed throughout the rift valley, indicating that crustal accretion of young volcanic rocks is not confined to a narrow central spreading axis. As areas of young volcanism are observed close to distinct fault surfaces, we propose that the widely dispersed volcanism may result frommagma rising along faults. Our results indicate that axial-centric spreading models may not accurately describe crustal accretion at ultraslow-spreading ridges, prompting the re-evaluation of these models.
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  • 93
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    AGU
    In:  Journal of Geophysical Research: Oceans, 91 (C12). pp. 14192-14206.
    Publication Date: 2020-07-23
    Description: In the western tropical Atlantic, seasonal variations in the surface winds and in the ocean are dominated by an annual harmonic. A simulation with a general circulation model indicates that the response in the western side of the basin is an equilibrium one practically in phase with the local winds. It includes the following: large vertical excursions of the thermocline that have a 180° change in phase across 8°N approximately; a change in the direction of the North Brazilian Coastal Current, which flows continuously along the coast between December and May but which veers offshore near 5°N to feed the North Equatorial Countercurrent during the other months; and a seasonal reversal of the countercurrent. To the east of 30°W, seasonal changes in the model have a prominent semiannual harmonic in phase with the local winds but only partially attributable to forcing at that frequency. The transients excited by the abrupt intensification of the southeast tradewinds in May happen to have a phase essentially the same as that of the semiannual forcing. These transients decay by the end of the calendar year, so that the seasonal cycle that starts with the intensification of the winds in May can be treated as an initial value problem as far as the upper ocean, above the thermocline, is concerned. The winds along the equator determine the response of the surface equatorial layer in the Gulf of Guinea but play a minor role in the seasonal upwelling along the coast near 5°N. That upwelling is strongly influenced by changes in both components of the wind, and in the curl of the wind, over the Gulf of Guinea.
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  • 94
    Publication Date: 2020-06-24
    Description: Marine-derived fungi have been shown in recent years to produce a plethora of new bioactive secondary metabolites, some of them featuring new carbon frameworks hitherto unprecedented in nature. These compounds are of interest as new lead structures for medicine as well as for plant protection. The aim of this protocol is to give a detailed description of methods useful for the isolation and cultivation of fungi associated with various marine organisms (sponges, algae and mangrove plants) for the extraction, characterization and structure elucidation of biologically active secondary metabolites produced by these marine-derived endophytic fungi, and for the preliminary evaluation of their pharmacological properties based on rapid 'in house' screening systems. Some results exemplifying the positive outcomes of the protocol are given at the end. From sampling in marine environment to completion of the structure elucidation and bioactivity screening, a period of at least 3 months has to be scheduled.
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  • 95
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    AGU
    In:  Journal of Geophysical Research: Oceans, 117 (C8).
    Publication Date: 2020-07-23
    Description: Large-scale budget calculations and numerical model process studies suggest that lateral eddy heat fluxes have an important cooling effect on the Norwegian Atlantic Current (NwAC) as it flows through the Nordic Seas. But observational estimates of such fluxes have been lacking. Here, wintertime surface eddy heat fluxes in the eastern Nordic Seas are estimated from surface drifter data, satellite data and an eddy-permitting numerical model. Maps of the eddy heat flux divergence suggest advective cooling along the path of the NwAC. Integrating the flux divergence over temperature classes yields consistent estimates for the three data sets; the waters warmer than about 6°C are cooled while the cooler waters are warmed. Similar integrations over bottom depth classes show that regions shallower than about 2000 m are cooled while deeper regions are warmed. Finally, integrating the flux divergence along the core of the NwAC suggests that the highest eddy-induced heat loss at the surface is along the steepest part of the continental slope, east of the Lofoten Basin. The model fields indicate that cooling of the current by lateral eddy fluxes is comparable to or larger than the local heat loss to the atmosphere.
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  • 96
    Publication Date: 2020-05-11
    Description: Many marine sponges are hosts to dense and phylogenetically diverse microbial communities that are located in the extracellular matrix of the animal. The candidate phylum Poribacteria is a predominant member of the sponge microbiome and its representatives are nearly exclusively found in sponges. Here we used single-cell genomics to obtain comprehensive insights into the metabolic potential of individual poribacterial cells representing three distinct phylogenetic groups within Poribacteria. Genome sizes were up to 5.4 Mbp and genome coverage was as high as 98.5%. Common features of the poribacterial genomes indicated that heterotrophy is likely to be of importance for this bacterial candidate phylum. Carbohydrate-active enzyme database screening and further detailed analysis of carbohydrate metabolism suggested the ability to degrade diverse carbohydrate sources likely originating from seawater and from the host itself. The presence of uronic acid degradation pathways as well as several specific sulfatases provides strong support that Poribacteria degrade glycosaminoglycan chains of proteoglycans, which are important components of the sponge host matrix. Dominant glycoside hydrolase families further suggest degradation of other glycoproteins in the host matrix. We therefore propose that Poribacteria are well adapted to an existence in the sponge extracellular matrix. Poribacteria may be viewed as efficient scavengers and recyclers of a particular suite of carbon compounds that are unique to sponges as microbial ecosystems.
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  • 97
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    Nature Publishing Group
    In:  Nature Reviews Microbiology, 10 (9). pp. 641-654.
    Publication Date: 2020-06-23
    Description: Marine sponges (phylum Porifera) often contain dense and diverse microbial communities, which can constitute up to 35% of the sponge biomass. The genome of one sponge, Amphimedon queenslandica, was recently sequenced, and this has provided new insights into the origins of animal evolution. Complementary efforts to sequence the genomes of uncultivated sponge symbionts have yielded the first glimpse of how these intimate partnerships are formed. The remarkable microbial and chemical diversity of the sponge–microorganism association, coupled with its postulated antiquity, makes sponges important model systems for the study of metazoan host–microorganism interactions, and their evolution, as well as for enabling access to biotechnologically important symbiont-derived natural products. In this Review, we discuss our current understanding of the interactions between marine sponges and their microbial symbiotic consortia, and highlight recent insights into these relationships from genomic studies.
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  • 98
    Publication Date: 2015-07-24
    Description: Collectively, marine sediments comprise the largest reservoir of methane on Earth. The flux of methane from the sea bed to the overlying water column is mitigated by the sulphate-dependent anaerobic oxidation of methane by marine microbes within a discrete sedimentary horizon termed the sulphate–methane transition zone. According to conventional isotope systematics, the biological consumption of methane leaves a residue of methane enriched in 13C (refs 1, 2, 3). However, in many instances the methane within sulphate–methane transition zones is depleted in 13C, consistent with the production of methane, and interpreted as evidence for the intertwined anaerobic oxidation and production of methane4, 5, 6. Here, we report results from experiments in which we incubated cultures of microbial methane consumers with methane and low levels of sulphate, and monitored the stable isotope composition of the methane and dissolved inorganic carbon pools over time. Residual methane became progressively enriched in 13C at sulphate concentrations above 0.5 mM, and progressively depleted in 13C below this threshold. We attribute the shift to 13C depletion during the anaerobic oxidation of methane at low sulphate concentrations to the microbially mediated carbon isotope equilibration between methane and carbon dioxide. We suggest that this isotopic effect could help to explain the 13C-depletion of methane in subseafloor sulphate–methane transition zones.
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  • 99
    Publication Date: 2015-09-10
    Description: Whether the characteristics of tropical cyclones have changed or will change in a warming climate — and if so, how — has been the subject of considerable investigation, often with conflicting results. Large amplitude fluctuations in the frequency and intensity of tropical cyclones greatly complicate both the detection of long-term trends and their attribution to rising levels of atmospheric greenhouse gases. Trend detection is further impeded by substantial limitations in the availability and quality of global historical records of tropical cyclones. Therefore, it remains uncertain whether past changes in tropical cyclone activity have exceeded the variability expected from natural causes. However, future projections based on theory and high-resolution dynamical models consistently indicate that greenhouse warming will cause the globally averaged intensity of tropical cyclones to shift towards stronger storms, with intensity increases of 2–11% by 2100. Existing modelling studies also consistently project decreases in the globally averaged frequency of tropical cyclones, by 6–34%. Balanced against this, higher resolution modelling studies typically project substantial increases in the frequency of the most intense cyclones, and increases of the order of 20% in the precipitation rate within 100 km of the storm centre. For all cyclone parameters, projected changes for individual basins show large variations between different modelling studies.
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  • 100
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    Nature Publishing Group
    In:  Nature Methods, 10 (10). pp. 996-998.
    Publication Date: 2020-06-24
    Description: Amplified marker-gene sequences can be used to understand microbial community structure, but they suffer from a high level of sequencing and amplification artifacts. The UPARSE pipeline reports operational taxonomic unit (OTU) sequences with ≤1% incorrect bases in artificial microbial community tests, compared with 〉3% incorrect bases commonly reported by other methods. The improved accuracy results in far fewer OTUs, consistently closer to the expected number of species in a community.
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