ALBERT

Description: Marine phytoplankton blooms are annual spring events that sustain active and diverse bloom-associated bacterial populations. Blooms vary considerably in terms of eukaryotic species composition and environmental conditions, but a limited number of heterotrophic bacterial lineages — primarily members of the Flavobacteriia, Alphaproteobacteria and Gammaproteobacteria — dominate these communities. In this Review, we discuss the central role that these bacteria have in transforming phytoplankton-derived organic matter and thus in biogeochemical nutrient cycling. On the basis of selected field and laboratory-based studies of flavobacteria and roseobacters, distinct metabolic strategies are emerging for these archetypal phytoplankton-associated taxa, which provide insights into the underlying mechanisms that dictate their behaviours during blooms.

Description: Owing to the turbulent nature of the ocean, mesoscale eddies are omnipresent. The impact of these transitory and approximately circular sea surface temperature fronts on the overlying atmosphere is not well known. Stationary fronts such as the Gulf Stream have been reported to lead to pronounced atmospheric changes1, 2. However, the impact of transient ocean eddies on the atmosphere has not been determined systematically, except on winds and to some extent clouds3, 4, 5, 6. Here, we examine the atmospheric conditions associated with over 600,000 individual eddies in the Southern Ocean, using satellite data. We show that ocean eddies locally affect near-surface wind, cloud properties and rainfall. The observed pattern of atmospheric change is consistent with a mechanism in which sea surface temperature anomalies associated with the oceanic eddies modify turbulence in the atmospheric boundary layer. In the case of cyclonic eddies, this modification triggers a slackening of near-surface winds, a decline in cloud fraction and water content, and a reduction in rainfall. We conclude that transient mesoscale ocean structures can significantly affect much larger atmospheric low-pressure systems that swiftly pass by at the latitudes investigated.

Description: Mud diapirism has recently been recognized in several modern accretionary wedges. It provides an important means of dewatering accretionary wedges and should be regarded as an important process for producing the melanges found in both modern and ancient accretionary terranes. Mud diapirism affects a large area of the Barbados Ridge Accretionary Complex. The distribution of the mud diapirs appears to be primarily controlled by the presence of underconsolidated terrigenous submarine fan deposits that are being accreted to the complex. The frequency of diapir occurrence decreases northward as the fan becomes thinner. Mud diapirs are absent from the very eastern most part of the complex formed from sediments accreted at its toe, with the exception of a few mud volcanoes on the ocean floor in front of the complex. The initiation of diapirism appears to be spatially coincident with the onset of subcretion, or underplating, of sediment to the base of the complex at a ramp between two levels of decollement. It is proposed that the release of mud and pore water from the subcreted sediments is a direct or indirect cause of most of the mud diapirism in the accretionary complex. There is a range of diapiric form dependent on the viscosity of the mud, from mud volcanoes fed by low viscosity mud, to higher viscosity mud ridges. The diapirs in the eastern areas of the complex are generally mud volcanoes with narrow conduits feeding a surface mound. Mud ridges are prominent in the western parts of the complex. This is interpreted as reflecting a general westward decrease in the fluid content of the accretionary complex. Bottom-simulating seismic reflectors formed by gas hydrate are commonly developed in the areas of mud volcano occurrences. The presence of the hydrate indicates that large volumes of methane are being generated at depth in these regions. The generation of methane may be contributing to zones of overpressuring in the wedge. Methane may also be partly responsible for driving the diapiric material to the surface to form mud volcanoes. Ridges in the subducting oceanic crust beneath the accretionary complex locally enhance diapirism above their crests and southern flanks. Faults formed later in the development of the complex are more commonly associated with diapirism than those resulting from accretion at the toe of the wedge. These later faults play an important role in controlling the sites of individual mud volcanoes, chains of mud volcanoes, and mud ridges.

Description: An influence of solar irradiance variations on Earth’s surface climate has been repeatedly suggested, based on correlations between solar variability and meteorological variables1. Specifically, weaker westerly winds have been observed in winters with a less active sun, for example at the minimum phase of the 11-year sunspot cycle2, 3, 4. With some possible exceptions5, 6, it has proved difficult for climate models to consistently reproduce this signal7, 8. Spectral Irradiance Monitor satellite measurements indicate that variations in solar ultraviolet irradiance may be larger than previously thought9. Here we drive an ocean–atmosphere climate model with ultraviolet irradiance variations based on these observations. We find that the model responds to the solar minimum with patterns in surface pressure and temperature that resemble the negative phase of the North Atlantic or Arctic Oscillation, of similar magnitude to observations. In our model, the anomalies descend through the depth of the extratropical winter atmosphere. If the updated measurements of solar ultraviolet irradiance are correct, low solar activity, as observed during recent years, drives cold winters in northern Europe and the United States, and mild winters over southern Europe and Canada, with little direct change in globally averaged temperature. Given the quasiregularity of the 11-year solar cycle, our findings may help improve decadal climate predictions for highly populated extratropical regions

Description: A total of 96 species of sponge were recorded in a bathymetric survey conducted within the iSimangaliso Wetland Park. Non-random processes are hypothesised to account for the decline in species richness with increasing depth, and the data add support to Rapoport’s rule. Morphological and colour diversity were strongly correlated and decreased with depth. Five communities could be identified at the 30% level of similarity using cluster analysis, and these correspond to intertidal and shallow subtidal (to 10 m), deep sub-photic zone (coral reefs: 10–30 m), deep reefs (40–90 m), canyon margin (100–140 m) and canyon (140–360 m). The data add support to recently hypothesised bathymetric zones around South Africa.

Description: Cold-water coral (CWC) reefs constitute one of the most complex deep-sea habitats harboring a vast diversity of associated species. Like other tropical or temperate framework builders, these systems are facing an uncertain future due to several threats, such as global warming and ocean acidification. In the case of Mediterranean CWC communities, the effect may be exacerbated due to the greater capacity of these waters to absorb atmospheric CO2 compared to the global ocean. Calcification in these organisms is an energy-demanding process, and it is expected that energy requirements will be greater as seawater pH and the availability of carbonate ions decrease. Therefore, studies assessing the effect of a pH decrease in skeletal growth, and metabolic balance are critical to fully understand the potential responses of these organisms under a changing scenario. In this context, the present work aims to investigate the medium- to long-term effect of a low pH scenario on calcification and the biochemical composition of two CWCs from the Mediterranean, Dendrophyllia cornigera and Desmophyllum dianthus. After 314 d of exposure to acidified conditions, a significant decrease of 70 % was observed in Desmophyllum dianthus skeletal growth rate, while Dendrophyllia cornigera showed no differences between treatments. Instead, only subtle differences between treatments were observed in the organic matter amount, lipid content, skeletal microdensity, or porosity in both species, although due to the high variability of the results, these differences were not statistically significant. Our results also confirmed a heterogeneous effect of low pH on the skeletal growth rate of the organisms depending on their initial weight, suggesting that those specimens with high calcification rates may be the most susceptible to the negative effects of acidification.

Description: In the Mediterranean deep-sea, scleractinian cold-water corals (CWC) are observed to survive at the uppermost end of their presumed thermal distribution range (4–13 °C). Here, we show that 2 common CWC species (i.e. Dendrophyllia cornigera and Desmophyllum dianthus) maintained in aquaria can indeed tolerate considerably elevated seawater temperatures (17.5 ± 0.1 °C), while growing at similar (D. dianthus) or significantly higher (D. cornigera) rates than conspecifics cultured in parallel for 87 days at ambient Mediterranean deep-sea temperature (12.5 ± 0.1 °C). Neither differences in coral appearance nor mortality were evident for both species at either temperature. D. dianthus grew significantly faster (0.23 ± 0.08 % day−1) than D. cornigera (0.05 ± 0.01 % day−1) under ambient thermal conditions. Growth of D. cornigera increased significantly (0.14 ± 0.07 % day−1) at elevated temperature, while Desmophyllum dianthus growth showed no significant difference under both conditions. These findings suggest that D. dianthus and D. cornigera may be capable of surviving in warmer environments than previously reported, and thus challenge temperature as the paramount limiting environmental factor for the occurrence of some CWC species.

Description: The anaerobic oxidation of methane (AOM) with sulphate, an area currently generating great interest in microbiology, is accomplished by consortia of methanotrophic archaea (ANME) and sulphate-reducing bacteria1, 2. The enzyme activating methane in methanotrophic archaea has tentatively been identified as a homologue of methyl-coenzyme M reductase (MCR) that catalyses the methane-forming step in methanogenic archaea3, 4. Here we report an X-ray structure of the 280 kDa heterohexameric ANME-1 MCR complex. It was crystallized uniquely from a protein ensemble purified from consortia of microorganisms collected with a submersible from a Black Sea mat catalysing AOM with sulphate4. Crystals grown from the heterogeneous sample diffract to 2.1 Å resolution and consist of a single ANME-1 MCR population, demonstrating the strong selective power of crystallization. The structure revealed ANME-1 MCR in complex with coenzyme M and coenzyme B, indicating the same substrates for MCR from methanotrophic and methanogenic archaea. Differences between the highly similar structures of ANME-1 MCR and methanogenic MCR include a F430 modification, a cysteine-rich patch and an altered post-translational amino acid modification pattern, which may tune the enzymes for their functions in different biological contexts.

Description: Iron limits phytoplankton growth and hence the biological carbon pump in the Southern Ocean1. Models assessing the impacts of iron on the global carbon cycle generally rely on dust input and sediment resuspension as the predominant sources2, 3. Although it was previously thought that most iron from deep-ocean hydrothermal activity was inaccessible to phytoplankton because of the formation of particulates4, it has been suggested that iron from hydrothermal activity5, 6, 7 may be an important source of oceanic dissolved iron8, 9, 10, 11, 12, 13. Here we use a global ocean model to assess the impacts of an annual dissolved iron flux of approximately 9×108 mol, as estimated from regional observations of hydrothermal activity11, 12, on the dissolved iron inventory of the world’s oceans. We find the response to the input of hydrothermal dissolved iron is greatest in the Southern Hemisphere oceans. In particular, observations of the distribution of dissolved iron in the Southern Ocean3 (Chever et al., manuscript in preparation; Bowie et al., manuscript in preparation) can be replicated in our simulations only when our estimated iron flux from hydrothermal sources is included. As the hydrothermal flux of iron is relatively constant over millennial timescales14, we propose that hydrothermal activity can buffer the oceanic dissolved iron inventory against shorter-term fluctuations in dust deposition.

Description: Uraninite solubility in 0.001–2.0 m HCl solutions was experimentally studied at 500°C, 1000 bar, and hydrogen fugacity corresponding to the Ni/NiO buffer. It was shown that the following U(IV) species dominate in the aqueous solution: U(OH)40, U(OH)2Cl20, and UOH Cl30 Using the results of uraninite solubility measurement, the Gibbs free energies of U(IV) species at 500°C and 1000 bar were calculated (kJ/mol): −9865.55 for UO2(aq), −1374.57 for U(OH)2 Cl20, and −1265.49 for UOH Cl30, and the equilibrium constants of uraninite dissolution in water and aqueous HCl solutions were estimated: UO2(cr) = UO2(aq), pK0 = 6.64; UO2(cr) + 2HCl0 = U(OH)2 Cl20, pK2 = 3.56; and UO2(cr) + 3HCl0 = UOHcl30 + H2O, pK3 = 3.05. The value pK1 ≈ 5.0 was obtained as a first approximation for the equilibrium UO2(cr) + H2O + HCl0 = U(OH)3Cl0. The constant of the reaction UO2(cr) + 4HCl0 = UCl40 + 2H2O (pK4 = 7.02) was calculated taking into account the ionization constants of U Cl40 and U(OH)40, obtained by extrapolation from 25 to 500°C at 1000 bar using the BR model. Intense dissolution and redeposition of gold (material of experimental capsules) was observed in our experiments. The analysis and modeling of this phenomenon suggested that the UO2 + x/UO2 redox pair oxidized Au(cr) to Au+(aq), which was then reduced under the influence of stronger reducers.

Description: Since the discovery of dense animal communities associated with deep-sea hydrothermal venting (Lonsdale 1977), biological knowledge of those animals has accumulated (Van Dover 2000). Some unique animals associated with vent fields were found to depend on chemosynthetic primary production (Corliss et al. 1979). Subsequently, similar chemosynthetic animal assemblages were also discovered associated with deep-sea methane-seep areas, whale falls, and sunken wood (Pauli et al. 1984; Smith et al. 1989). To understand the pathways of adaptation to these environments, species shared between different habitats are of particular interest (Distel et al. 2000; Lorion et al. 2008). On a global scale, the number of species shared between vents and seeps is less than 10% of the total recorded vent or seep species (e.g. Tunnicliffe et al. 1998, 2003; Sibuet and Olu 1998). In the vent and seep communities around Japan, however, this figure exceeds 20% (based on a faunal list provided by Fujikura et al. 2008), although the Identification of species is still in progress. This relatively high abundance of both vent- and seep-inhabiting species suggests close relationships between vent and seep communities around Japan. A high similarity between megafaunal communities at vents and seeps around Japan was already noted by Fujikura et al. (1995); however, that study was based on species abundances investigated at only a single vent and two methane-seep communities. To date, at least 55 vent and seep communities have been discovered around Japan (Fujikura et al. 2008), and further analyses are required to elucidate the nature of this similarity. In this chapter, we focus on similarities between megafaunal communities inhabiting vents and seeps. As Kojima (2002) has already provided an review with an almost complete list of studies on vent and seep animals around Japan as of the time of publication, here we only provide brief, essential Information on their geologic settings and ecologic characteristics. Then, we summarize the species distributional records with Statistical analyses based on previous studies of those communities around Japan and discuss their proximity. In addition, we also summarize recent genetic studies of both vent- and seep-inhabiting species, i.e., three Calyptogena clams, Lamellibrachia and Paraescarpia tubeworms, and Bathymodiolus musseis, and discuss the Connectivity among populations of these species. Finally, we discuss whether the similarity of communities is accompanied by population Connectivity.

Description: SLC26A11 (human)/Slc26a11 (mouse), also known as kidney brain anion transporter (KBAT), is a member of the SLC26 anion transporter family and shows abundant mRNA expression in the brain. However, its exact cellular distribution and subcellular localization in the brain and its functional identity and possible physiological roles remain unknown. Expression and immunostaining studies demonstrated that Slc26a11 is abundantly expressed in the cerebellum, with a predominant expression in Purkinje cells. Lower expression levels were detected in hippocampus, olfactory bulb, cerebral cortex, and subcortical structures. Patch clamp studies in HEK293 cells transfected with mouse cDNA demonstrated that Slc26a11 can function as a chloride channel that is active under basal conditions and is not regulated by calcium, forskolin, or co-expression with cystic fibrosis transmembrane regulator. Single and double immunofluorescent labeling studies demonstrated the localization of vacuolar (V) H+-ATPase and Slc26a11 (KBAT) in the plasma membrane in Purkinje cells. Functional studies in HEK293 cells indicated that transfection with Slc26a11 stimulated acid transport via endogenous V H+-ATPase. We conclude that Slc26a11 (KBAT) is prominently distributed in output neurons of various subcortical and cortical structures in the central nervous system, with specific expression in Purkinje cells and that it may operate as a chloride channel regulating acid translocation by H+-ATPase across the plasma membrane and in intracellular compartments.

Description: Biological N2 fixation is an important part of the marine nitrogen cycle as it provides a source of new nitrogen that can support biological carbon export and sequestration. Research in the past decade has focused on determining the patterns of distribution and abundance of diazotrophs, defining the environmental features leading to these patterns and characterizing the factors that constrain marine N2 fixation overall. In this Review, we describe how variations in the deposition of iron from dust to different ocean basins affects the limiting nutrient for N2 fixation and the distribution of different diazotrophic species. However, many questions remain about marine N2 fixation, including the role of temperature, fixed nitrogen species, CO2 and physical forcing in controlling N2 fixation, as well as the potential for heterotrophic N2 fixation.

Description: The relationship between the biomass of reproductively mature individuals (spawning stock) and the resulting offspring added to the population (recruitment), the stock–recruitment relationship, is a fundamental and challenging problem in all of population biology. The steepness of this relationship is commonly defined as the fraction of recruitment from an unfished population obtained when the spawning stock biomass is 20% of its unfished level. Since its introduction about 20 years ago, steepness has become widely used in fishery management, where it is usually treated as a statistical quantity. Here, we investigate the reproductive ecology of steepness, using both unstructured and age‐structured models. We show that if one has sufficient information to construct a density‐independent population model (maximum per capita productivity and natural mortality for the unstructured case or maximum per capita productivity, natural mortality and schedules of size and maturity at age for the structured model) then one can construct a point estimate for steepness. Thus, steepness cannot be chosen arbitrarily. If one assumes that the survival of recruited individuals fluctuates within populations, it is possible, by considering the early life history, to construct a prior distribution for steepness from this same demographic information. We develop the ideas for both compensatory (Beverton–Holt) and over‐compensatory (Ricker) stock–recruitment relationships. We illustrate our ideas with an example concerning bluefin tuna (Thunnus thynnus/orientalis, Scombridae). We show that assuming that steepness is unity when recruitment is considered to be environmentally driven is not biologically consistent, is inconsistent with a precautionary approach, and leads to the wrong scientific inference (which also applies for assigning steepness any other single value).

Description: The future demands on professional archaeological prospection will be its ability to cover large areas in a time and cost efficient manner with very high spatial resolution and accuracy. The objective of the 2010 in Vienna established Ludwig Boltzmann Institute for Archaeological Prospection and Virtual Archaeology in collaboration with its nine European partner organizations is the advancement of the state-of-the-art by focusing on the development of remote sensing, geophysical prospection and virtual reality applications, as well as of novel integrated interpretation approaches dedicated to non-invasive spatial archaeology combining cutting-edge near-surface prospection methods with advanced computer science. Within the institute’s research program different areas for distinct case studies in Austria, Germany, Norway, Sweden and the UK have been selected as basis for the development and testing of new concepts for efficient and universally applicable tools for spatial, non-invasive archaeology. The collective resources and expertise available amongst the new research institute and associated partners permit innovative approaches to the archaeological exploration, documentation and investigation of the cultural heritage contained in entire archaeological landscapes. First promising results illustrate the potential of the proposed methodology and concepts.

Description: The emission rates of eight volatile halogenated compounds by three tropical brown seaweed species collected from Cape Rachado, west coast Peninsular Malaysia, under different irradiances have been determined. A purge-and-trap sample preparation system with a gas chromatograph and mass-selective detector was used to measure a suite of halocarbons released by Sargassum binderi Sonder ex J. Agardh, Padina australis Hauck, and Turbinaria conoides (J. Agardh) Kützing. All species are widely distributed in Peninsular Malaysia, with S. binderi a dominant seaweed species at our survey site. Release of few halocarbons was found to be influenced by irradiance. Correlations were also observed between emission of certain halocarbons with photosynthetic activity, especially bromo-and iodinated compounds (0.6 〈 r 〈0.9; p 〈 0.01) suggesting that environmental factors such as light can affect the release of these volatile halogenated compounds by the seaweeds into the atmosphere. Compared with temperate and polar brown seaweeds, tropical species, such as T. conoides, may emit higher levels of bromoform, CHBr3, and other halocarbons. It is therefore important to investigate the contribution of tropical seaweeds towards the local atmospheric composition of halocarbons.

Description: The total length, the dorsal mantle length and the weight of the lens of Octopus vulgaris Lamarck have been related to the live body weight. The effect of fixation on the body weight and dorsal mantle length has been tested on six small octopuses.

Description: The Pacific sector of Antarctica, including both the Antarctic Peninsula and continental West Antarctica, has experienced substantial warming in the past 30 years. An increase in the circumpolar westerlies, owing in part to the decline in stratospheric ozone concentrations since the late 1970s, may account for warming trends in the peninsula region in austral summer and autumn. The more widespread warming in continental West Antarctica (Ellsworth Land and Marie Byrd Land) occurs primarily in austral winter and spring, and remains unexplained. Here we use observations of Antarctic surface temperature and global sea surface temperature, and atmospheric circulation data to show that recent warming in continental West Antarctica is linked to sea surface temperature changes in the tropical Pacific. Over the past 30 years, anomalous sea surface temperatures in the central tropical Pacific have generated an atmospheric Rossby wave response that influences atmospheric circulation over the Amundsen Sea, causing increased advection of warm air to the Antarctic continent. General circulation model experiments show that the central tropical Pacific is a critical region for producing the observed high latitude response. We conclude that, by affecting the atmospheric circulation at high southern latitudes, increasing tropical sea surface temperatures may account for West Antarctic warming through most of the twentieth century.

Description: The crystalline parts of the Bergsträsser (western) Odenwald and the southern Spessart expose Variscan I-type granitoids of the mid-German crystalline rise that formed during subduction of the Rheic ocean and collision of Avalonia and Armorica about 365 and 330 Ma ago. We present geochemical, Sr-Nd isotopic, single zircon 207Pb/206Pb evaporation and conventional U-Pb data from a diorite-granodiorite complex of the southern Spessart and from a flasergranitoid of the Bergsträsser Odenwald unit II. Both intrusions provide almost identical zircon ages (332.4 ± 1.6 Ma for Odenwald and 330.4 ± 2.0 Ma for Spessart). Lack of inherited or pre-magmatic zircon components connotes magma genesis in deep crustal hot zones despite low temperature estimates (758–786 °C) derived from zircon saturation thermometry. Investigated rock samples display normal- to high-K calc-alkaline metaluminous (Spessart) and weakly peraluminous (Odenwald) geochemical characteristics. The Spessart pluton has lower εNd(T) values (−2.3 to −3.0) and higher 87Sr/86Sri ratios (0.7060 to 0.7066) compared to Odenwald flasergranitoid (εNd(T) = −0.8 and 87Sr/86Sri = 0.7048). In terms of the tectonic setting, the diorite-granodiorite complex of the southern Spessart forms the continuation of the north Armorican arc segment exposed in the Bergsträsser Odenwald. Taking into account previously reported geochemical and isotopic results, it is concluded that the Spessart pluton does not match compositions of Odenwald unit II granitoids but likely represents the north-eastward extension of unit III.

Description: Two discontinuous tephra layers were discovered at Burney Spring Mountain, northern California. Stratigraphic relationships suggest that they are two distinct primary fall tephras. The geochemistries of these tephras from electron probe microanalysis were compared with those of known layers found in the area to test for potential correlations, using clustering analysis on geochemistry. In most cases, geochemical data from a tephra layer can be assigned to a single cluster, but in some cases the analyses are spread over several clusters. This spreading is a direct result of mixing and reworking of several tephra layers. The mixing, in turn, appears to be related to the influence of wind in a marshy environment.

Description: Four primary glass populations, well defined by their Sr, Ba and Y concentrations, occur in the Youngest Toba Tuff (YTT), which was deposited during a Supereruption of the Toba caldera complex in northern Sumatra 75 ka. Average concentrations of major and trace elements indicate a coherent, systematic Variation of glass composition across populations. No clear pattern in the areal distribution of these four glass groups can be discerned. The multiple glass populations of the YTT easily distinguish it from the single homogeneous glass population of the Middle Toba Tuff (~500 ka), as represented by its basal vitrophyre, and that of the Oldest Toba Tuff (~800 ka), as represented by ash Layer D at the Ocean Drilling Program site 758 in the Indian Ocean.

Description: The synthetic production of monodisperse single magnetic domain nanoparticles at ambient temperature is challenging. In nature, magnetosomes--membrane-bound magnetic nanocrystals with unprecedented magnetic properties--can be biomineralized by magnetotactic bacteria. However, these microbes are difficult to handle. Expression of the underlying biosynthetic pathway from these fastidious microorganisms within other organisms could therefore greatly expand their nanotechnological and biomedical applications. So far, this has been hindered by the structural and genetic complexity of the magnetosome organelle and insufficient knowledge of the biosynthetic functions involved. Here, we show that the ability to biomineralize highly ordered magnetic nanostructures can be transferred to a foreign recipient. Expression of a minimal set of genes from the magnetotactic bacterium Magnetospirillum gryphiswaldense resulted in magnetosome biosynthesis within the photosynthetic model organism Rhodospirillum rubrum. Our findings will enable the sustainable production of tailored magnetic nanostructures in biotechnologically relevant hosts and represent a step towards the endogenous magnetization of various organisms by synthetic biology.

Description: Marine phytoplankton blooms are annual spring events that sustain active and diverse bloom-associated bacterial populations. Blooms vary considerably in terms of eukaryotic species composition and environmental conditions, but a limited number of heterotrophic bacterial lineages — primarily members of the Flavobacteriia, Alphaproteobacteria and Gammaproteobacteria — dominate these communities. In this Review, we discuss the central role that these bacteria have in transforming phytoplankton-derived organic matter and thus in biogeochemical nutrient cycling. On the basis of selected field and laboratory-based studies of flavobacteria and roseobacters, distinct metabolic strategies are emerging for these archetypal phytoplankton-associated taxa, which provide insights into the underlying mechanisms that dictate their behaviours during blooms.

Description: The relationship between the biomass of reproductively mature individuals (spawning stock) and the resulting offspring added to the population (recruitment), the stock–recruitment relationship, is a fundamental and challenging problem in all of population biology. The steepness of this relationship is commonly defined as the fraction of recruitment from an unfished population obtained when the spawning stock biomass is 20% of its unfished level. Since its introduction about 20 years ago, steepness has become widely used in fishery management, where it is usually treated as a statistical quantity. Here, we investigate the reproductive ecology of steepness, using both unstructured and age‐structured models. We show that if one has sufficient information to construct a density‐independent population model (maximum per capita productivity and natural mortality for the unstructured case or maximum per capita productivity, natural mortality and schedules of size and maturity at age for the structured model) then one can construct a point estimate for steepness. Thus, steepness cannot be chosen arbitrarily. If one assumes that the survival of recruited individuals fluctuates within populations, it is possible, by considering the early life history, to construct a prior distribution for steepness from this same demographic information. We develop the ideas for both compensatory (Beverton–Holt) and over‐compensatory (Ricker) stock–recruitment relationships. We illustrate our ideas with an example concerning bluefin tuna (Thunnus thynnus/orientalis, Scombridae). We show that assuming that steepness is unity when recruitment is considered to be environmentally driven is not biologically consistent, is inconsistent with a precautionary approach, and leads to the wrong scientific inference (which also applies for assigning steepness any other single value).

Description: Stock‐based and ecosystem‐based indicators are used to provide a new diagnosis of the fishing impact and environmental status of European seas. In the seven European marine ecosystems covering the Baltic and the North‐east Atlantic, (i) trends in landings since 1950 were examined; (ii) syntheses of the status and trends in fish stocks were consolidated at the ecosystem level; and (iii) trends in ecosystem indicators based on landings and surveys were analysed. We show that yields began to decrease everywhere (except in the Baltic) from the mid‐1970s, as a result of the over‐exploitation of some major stocks. Fishermen adapted by increasing fishing effort and exploiting a wider part of the ecosystems. This was insufficient to compensate for the decrease in abundance of many stocks, and total landings have halved over the last 30 years. The highest fishing impact took place in the late 1990s, with a clear decrease in stock‐based and ecosystem indicators. In particular, trophic‐based indicators exhibited a continuous decreasing trend in almost all ecosystems. Over the past decade, a decrease in fishing pressure has been observed, the mean fishing mortality rate of assessed stocks being almost halved in all the considered ecosystems, but no clear recovery in the biomass and ecosystem indicators is yet apparent. In addition, the mean recruitment index was shown to decrease by around 50% in all ecosystems (except the Baltic). We conclude that building this kind of diagnosis is a key step on the path to implementing an ecosystem approach to fisheries management.

Description: Teleost fish grow continuously throughout their lifespan, and this growth includes visual system components: eyes, optic nerves, and brain. As fish grow, the optic nerve lengthens and neural signals must travel increasing distances from the eye to the optic tectum along thousands of retinal ganglion cell (RGC) axons. Larger fish have better vision that enhances their ability to capture prey, but they are faced with the potential computational problem of changes in the relative timing of visual information arriving at the brain. Optic nerve conduction delays depend on RGC axon conduction velocities, and velocity is primarily determined by axon diameters. If axon diameters do not increase in proportion to body length, then absolute and relative conduction delays will vary with fish size. We have measured optic nerve lengths and axon diameter distributions in different sized zebrafish (Danio rerio) and goldfish (Carassius auratus) and find that, as both species of fish grow, axon diameters increase to reduce average conduction delays by about half and to keep relative delays constant. This invariance of relative conduction delays simplifies computational problems faced by the optic tectum.

Description: Regression trees represent one of the most popular tools in predictive data mining applications. However, previous studies have shown that their performances are not completely satisfactory when the dependent variable is highly skewed, and severely degrade in the presence of heavy-tailed error distributions, especially for grossly mis-measured values of the dependent variable. In this paper the lack of robustness of some classical regression trees is investigated by addressing the issue of highly-skewed and contaminated error distributions. In particular, the performances of some non robust regression trees are evaluated through a Monte Carlo experiment and compared to those of some trees, based on M-estimators, recently proposed in order to robustify this kind of methods. In conclusion, the results obtained from the analysis of a real dataset are presented.

Description: Overpressure generation due to rapid sediment deposition can result in low effective stresses within the sediment column. It has been proposed that these large overpressures are the main preconditioning factor for causing large-scale submarine slope failure on passive continental margins, such as those in the Gulf of Mexico and offshore Norway. The rate of overpressure generation depends on the sedimentation rate, sediment compressibility and permeability. The Gulf of Mexico and the Norwegian continental slope have experienced comparatively high sediment input, but large-scale slope failure also occurs in locations with very low sedimentation rates such as the Northwest African continental margin. Here we show results from 2D numerical modelling of a 2° continental slope subjected to deposition rates of 0.15 m/ka. These results do not indicate any evidence for significant overpressure or slope instability. We conclude that factors other than overpressure must be fundamental for initiating slope failure, at least in locations with low sedimentation rates.

Description: As sessile filter feeders, sponges rely on a highly efficient fluid transport system. Their physiology depends on efficient water exchange, which is performed by the aquiferous system. This prominent poriferan anatomical character represents a dense network of incurrent and excurrent canals on which we lack detailed 3D models. To overcome this, we investigated the complex leucon‐type architecture in the demosponge Tethya wilhelma using corrosion casting, microtomography, and 3D reconstructions. Our integrative qualitative and quantitative approach allowed us to create, for the first time, high‐resolution 3D representations of entire canal systems which were used for detailed geometric and morphometric measurements. Canal diameters lack distinct size classes, and bifurcations are non‐uniformly ramified. A relatively high number of bifurcations show previously unknown and atypical cross‐sectional area ratios. Scaling properties and topological patterns of the canals indicate a more complex overall architecture than previously assumed. As a consequence, it might be more convenient to group canals into functional units rather than hierarchical clusters. Our data qualify the leucon canal system architecture of T. wilhelma as a highly efficient fluid transport system adapted toward minimal flow resistance. Our results and approach are relevant for a better understanding of sponge biology and cultivation techniques.

Description: There has been a good deal of interest in the potential of marine vegetation as a sink for anthropogenic C emissions (“Blue Carbon”). Marine primary producers contribute at least 50% of the world’s carbon fixation and may account for as much as 71% of all carbon storage. In this paper, we analyse the current rate of harvesting of both commercially grown and wild-grown macroalgae, as well as their capacity for photosynthetically driven CO2 assimilation and growth. We suggest that CO2 acquisition by marine macroalgae can represent a considerable sink for anthropogenic CO2 emissions and that harvesting and appropriate use of macroalgal primary production could play a significant role in C sequestration and amelioration of greenhouse gas emissions.

Description: Am Süd-Ausgang des Roten Meeres entstehen unter idealen Wachstumsbedingungen fast reine Korallen-Saumriffe, die als dünne Platten oft kilometerweit mit einer Geschwindigkeit von Zentimetern pro Jahr auf ihrem Schutt von der Küste horizontal gegen das Meer vorwachsen. Aufgetauchte Saumrifte, ein flacher Bootskanal oder abradierte Riffoberflächen weisen auf pleistozäne und jüngere Meeresspiegelschwankungen bzw. tektonische Verstellungen hin. Von einer gewissen Breite an bilden sich auf den Riffen Inseln in Form langgestreckter Rücken aus Korallensand, hinter denen sich stellenweise Mangrove ansiedelt oder Salze in flachen Lagunen abscheiden. Schließlich kann der Strand auf das Saumriff vorverlegt und dieses in die Küstenebene einbezogen werden.

Description: Vertebrates have evolved a sophisticated adaptive immune system that relies on an almost infinite diversity of antigen receptors that are clonally expressed by specialized immune cells that roam the circulatory system. These immune cells provide vertebrates with extraordinary antigen-specific immune capacity and memory, while minimizing self-reactivity. Plants, however, lack specialized mobile immune cells. Instead, every plant cell is thought to be capable of launching an effective immune response. So how do plants achieve specific, self-tolerant immunity and establish immune memory? Recent developments point towards a multilayered plant innate immune system comprised of self-surveillance, systemic signalling and chromosomal changes that together establish effective immunity.

Description: To survey hepatitis B virus (HBV) integration in liver cancer genomes, we conducted massively parallel sequencing of 81 HBV-positive and 7 HBV-negative hepatocellular carcinomas (HCCs) and adjacent normal tissues. We found that HBV integration is observed more frequently in the tumors (86.4%) than in adjacent liver tissues (30.7%). Copy-number variations (CNVs) were significantly increased at HBV breakpoint locations where chromosomal instability was likely induced. Approximately 40% of HBV breakpoints within the HBV genome were located within a 1,800-bp region where the viral enhancer, X gene and core gene are located. We also identified recurrent HBV integration events (in ≥4 HCCs) that were validated by RNA sequencing (RNA-seq) and Sanger sequencing at the known and putative cancer-related TERT, MLL4 and CCNE1 genes, which showed upregulated gene expression in tumor versus normal tissue. We also report evidence that suggests that the number of HBV integrations is associated with patient survival.

Description: Inhibitors of bacterial quorum sensing have been proposed as potentially novel therapeutics for the treatment of certain bacterial diseases. We recently reported a marine Halobacillus salinus isolate that secretes secondary metabolites capable of quenching quorum sensing phenotypes in several Gram-negative reporter strains. To investigate how widespread the production of such compounds may be in the marine bacterial environment, 332 Gram-positive isolates from diverse habitats were tested for their ability to interfere with Vibrio harveyi bioluminescence, a cell signaling-regulated phenotype. Rapid assay methods were employed where environmental isolates were propagated alongside the reporter strain. “Actives” were defined as bacteria that interfered with bioluminescence without visible cell-killing effects (antibiotic activity). A total of 49 bacterial isolates interfered with bioluminescence production in the assays. Metabolite extracts were generated from cultures of the active isolates, and 28 reproduced the bioluminescence inhibition against V. harveyi. Of those 28, five extracts additionally inhibited violacein production by Chromobacterium violaceum. Chemical investigations revealed that phenethylamides and a cyclic dipeptide are two types of secondary metabolites responsible for the observed activities. The active bacterial isolates belonged primarily to either the genus Bacillus or Halobacillus. The results suggest that Gram-positive marine bacteria are worthy of further investigation for the discovery of quorum sensing antagonists.

Description: The tephrostratigraphy of lake sediments in the Endinger Bruch provides the first robust age model for the Lateglacial palynological records of Vorpommern (north-east Germany). Cryptotephra investigations revealed six tephra layers within sediments spanning from Open vegetation phase I (∼Bølling, ∼15 ka) to the Early Holocene Betula/Pinus forest phase (∼Pre-boreal, ∼10.5 ka). Four of these layers have been correlated with previously described tephra layers found in sites across Europe. The Laacher See Tephra (Eifel Volcanic Field) is present in very high concentrations within sediments of the Lateglacial Betula (/Pinus) forest phase (∼Allerød). The Vedde Ash (Iceland) lies midway through Open vegetation phase III (∼Younger Dryas). The Hässeldalen and the Askja tephras (Iceland) lie in the Early Holocene Betula/Pinus forest phase (∼Preboreal). These tephra layers have independently derived age estimates, which have been imported into the Endinger Bruch record. Furthermore, the layers facilitate direct correlation of the regional vegetation record with other palaeoenvironmental archives, which contain one or more of the same tephra layers, from Greenland to Southern Europe. In doing this, localized variations are confirmed in some aspects of the pollen stratigraphy; however, transitions between the main vegetation phases appear to occur synchronously (within centennial errors) with the equivalent environmental transitions observed in sites across the European continent.

Description: North Pacific flatfishes are gaining increased popularity on the German market. Isoelectric focusing of sarcoplasmic proteins and PCR-based DNA analysis were applied to identify fillets of nine Alaskan Flatfish species: Artheresthes stomias (Arrow-tooth flounder), Limanda aspera (Yellowfin sole), Isopsetta isolepis (Butter sole), Lepidopsetta bilineata (Southern rock sole), Lepidopsetta polyxystra (Northern rock sole), Hippoglossus stenolepis (Pacific halibut), Hippoglossoides elassodon (Flathead sole), Platichthys stellatus (Starry flounder), and Glyptocephalus zachirus (Rex sole). Characteristic protein patterns were obtained for raw fillets of several species. Reactivity of flatfish DNA against five pairs of primers was tested, amplifying segments of the mitochondrial cytochrome b, cytochrome oxidase subunit I, 16S rRNA gene, as well as the nuclear parvalbumin gene. Amplicons of the cytochrome b gene were sequenced and used for single-strand conformation polymorphism analysis. The survey of deep-frozen commercial yellowfin sole fillets resulted in the detection of 17% of the fillets being mislabelled; Northern rock sole, butter sole and flathead sole had been used as substitutes.

Description: Marine habitats worldwide are increasingly pressurized by climate change, especially along the Antarctic Peninsula. Well-studied areas in front of rapidly retreating tidewater glaciers like Potter Cove are representative for similar coastal environments and, therefore, shed light on habitat formation and development on not only a local but also regional scale. The objective of this study was to provide insights into habitat distribution in Potter Cove, King George Island, Antarctica, and to evaluate the associated environmental processes. Furthermore, an assessment concerning the future development of the habitats is provided. To describe the seafloor habitats in Potter Cove, an acoustic seabed discrimination system (RoxAnn) was used in combination with underwater video images and sediment samples. Due to the absence of wave and current measurements in the study area, bed shear stress estimates served to delineate zones prone to sediment erosion. On the basis of the investigations, two habitat classes were identified in Potter Cove, namely soft-sediment and stone habitats that, besides influences from sediment supply and coastal morphology, are controlled by sediment erosion. A future expansion of the stone habitat is predicted if recent environmental change trends continue. Possible implications for the Potter Cove environment, and other coastal ecosystems under similar pressure, include changes in biomass and species composition.

Description: Climate warming at the end of the last glaciation caused ice caps on Icelandic volcanoes to retreat. Removal of surface ice load is thought to have decreased pressures in the underlying mantle, triggering decompression melting, enhanced magma generation and increased volcanic activity1–3. Present-day climate change could have the same effect, although there may be a time lag of hundreds of years between magma generation and eruption4,5. However, in addition to increased magma generation, pressure changes associated with ice retreat should also alter the capacity for storing magma within the crust. Here we use a numerical model to evaluate the effect of the current decrease in ice load on magma storage in the crust at the Kverkfjöll volcanic system, located partially beneath Iceland’s largest ice cap. We compare the model results with radar and global positioning system measurements of surface displacement and changes in crustal stress between 2007 and 2008, during the intrusion of a deep dyke at Upptyppingar. We find that although the main component of stress recorded during dyke intrusion relates to plate extension, another component of stress is consistent with the stress field caused by the retreating ice cap. We conclude that the retreating ice cap led to enhanced capture of magma within the crust. We suggest that ice-cap retreat can promote magma storage, rather than eruption, at least in the short term.

Description: A polyphasic analysis was carried out to clarify the taxonomic status of four marine actinomycete strains that share a phylogenetic relationship and phenotypic characteristics with the genus Salinispora. These strains formed a distinct lineage within the Salinispora 16S rRNA and gyrB trees and were found to possess a range of phenotypic properties and DNA:DNA hybridization values that distinguished them from the type strains of the two validly named species in this genus, Salinisporatropica (CNB-440T, ATCC BAA-916T) and Salinispora arenicola (CNH-643T, ATCC BAA-917T). The combined genotypic and phenotypic data support this conclusion. It is proposed that the strains be designated as Salinisporapacifica sp. nov., the type strain of which is CNR-114T (DSMZ YYYYT = KACC 17160T).

Description: Human disturbances, such as overfishing, may disrupt predator-prey interactions and modify food webs. Underwater surveys were carried out at six shallow-water reef barrens in temperate waters of northern-central Chile from October to December 2010 to describe the effects of predation, habitat complexity (low, medium and high) and refuge availability on the abundance and population structure of the rock shrimp Rhynchocinetes typus (Rhynchocinetidae), an important mesoconsumer on subtidal hard substrata. Three sites were within managed (restricted access) areas for fishermen, and three were unmanaged (open-access). Field observations and tethering experiments were conducted to examine the relationship between fish and shrimp abundances, and the relative predation rates on shrimps. Direct effects of predation on R. typus body-size distribution were examined from shrimps collected in the field and fish stomachs. The presence and the abundance of R. typus increased with habitat reef complexity and refuge availability. Shrimp abundance was negatively related to fish abundance in managed areas, but not in open-access areas, where shrimp densities were the highest. Also, predation rates and body-size distribution of shrimps were unrelated, although fish consumed more large shrimps than should be expected from their distribution in the field. R. typus occurred most often in shelters with wide openings, offering limited protection against predators, but providing potential aggregation sites for shrimps. Overall, direct effects of predation on shrimp densities and population structure were weak, but indirect effects on shrimp distribution within reefs appear to have been mediated through behavioural responses. Our study highlights the need to assess both numerical and behavioural responses of prey to determine the effects of predator loss on mesoconsumer populations.

Description: Whilst a range of animals have been shown to respond behaviourally to components of the Earth’s magnetic field, evidence of the value of this sensory perception for small animals advected by strong flows (wind/ocean currents) is equivocal. We added geomagnetic directional swimming behaviour for North Atlantic loggerhead turtle hatchlings (Carettacaretta) into a high-resolution (1/4°) global general circulation ocean model to simulate 2,925-year-long hatchling trajectories comprising 355,875 locations. A little directional swimming (1–3 h per day) had a major impact on trajectories; simulated hatchlings travelled further south into warmer water. As a result, thermal elevation of hatchling metabolic rates was estimated to be between 63.3 and 114.5% after 220 days. We show that even small animals in strong flows can benefit from geomagnetic orientation and thus the potential implications of directional swimming for other taxa may be broad.

Description: The effect of phototrophic biofilm activity on advective transport of cadmium (Cd), copper (Cu), nickel (Ni), and lead (Pb) in sandy sediments was examined using percolated columns. Cd and Ni in the effluent exhibited clear diel cycles in biofilm-containing columns, with concentrations at the end of dark periods exceeding those during illumination by up to 4.5- and 10-fold for Ni and Cd, respectively. Similar cycles were not observed for Pb or Cu. Breakthrough of the latter metals was greatly retarded and incomplete relative to Cd and Ni, and trends in biofilm treatments did not differ greatly from those in control columns. Inhibition of photosystem II by DCMU (3-(3,4-dichlorophenyl)-1,1-dimethylurea) proved that diel cycles of Cd and Ni were controlled by oxygenic photosynthesis, and microsensor measurements showed that metal cycles closely matched metabolic activity-driven pH variations. The sorption edge pH for the sand/biofilm substrate followed the order Ni 〉 Cd 〉 Cu 〉 Pb, and for Ni and Cd, was within the pH 7–10 range observed in the biofilm-containing column. Adsorption dynamics over the light periods matched pH increases, but desorption during dark periods was incomplete and slower than the rate of change of pH. Over a diel cycle, desorption was less than adsorption, resulting in net binding of dissolved metals due to the biofilm metabolic activity. Extraction with selective reagents indicated that the adsorbed metals were readily exchangeable, and potentially bioavailable. Thus, phototrophic benthic biofilms can control the transport of some metals across the sand–water interface, and processes in this very thin surficial layer should be considered when evaluating chemical fluxes in permeable sediments.

Description: Although long-distance transport of marine organisms is constrained by numerous oceanic and biological factors, some species have evolved life-histories reliant on such movements. We examine the factors that promote long-distance transport in a transoceanic migrant, young loggerhead sea turtles (Caretta caretta), from the southeastern U.S. Empirical data from near-surface buoys and simulations in two ocean circulation models indicated that passive drifters are often retained for long periods shoreward of oceanic fronts that delineate coastal and offshore waters. Further simulations revealed that offshore swimming aided newly hatched turtles in moving past fronts and increased turtles’ probability of survival, reaching distant foraging grounds, and encountering favorable temperatures. Swimming was most beneficial in regions that were more favorable under scenarios assuming passive drift. These results have broad implications for understanding the movement processes of many marine species, highlighting likely retention of more planktonic species and potential for dispersal in more nektonic species.

Description: The four rhopalia of cubomedusae are integrated parts of the central nervous system carrying their many eyes and thought to be the centres of visual information processing. Rhopalial pacemakers control locomotion through a complex neural signal transmitted to the ring nerve and the signal frequency is modulated by the visual input. Since electrical synapses have never been found in the cubozoan nervous system all signals are thought to be transmitted across chemical synapses, and so far information about the neurotransmitters involved are based on immunocytochemical or behavioural data. Here we present the first direct physiological evidence for the types of neurotransmitters involved in sensory information processing in the rhopalial nervous system. FMRFamide, serotonin and dopamine are shown to have inhibitory effect on the pacemaker frequency. There are some indications that the fast acting acetylcholine and glycine have an initial effect and then rapidly desensitise. Other tested neuroactive compounds (GABA, glutamate, and taurine) could not be shown to have a significant effect.

Description: Here we present a tephrostratigraphic record (core Co1202) recovered from the northeastern part of Lake Ohrid (Republics of Macedonia and Albania) reaching back to Marine Isotope Stage (MIS) 6. Overall ten horizons (OT0702-1 to OT0702-10) containing volcanic tephra have been recognised throughout the 14.94m long sediment succession. Four tephra layers were visible at macroscopic inspection (OT0702-4, OT0702-6, OT0702-8 and OT0702-9), while the remaining six are cryptotephras (OT0702-1, OT0702-2, OT0702-3, OT0702-5, OT0702-7 and OT0702-10) identified from peaks in K, Zr and Sr intensities, magnetic susceptibility measurements, and washing and sieving of the sediments. Glass shards of tephra layers and cryptotephras were analysed with respect to their major element composition, and correlated to explosive eruptions of Italian volcanoes. The stratigraphy and the major element composition of tephra layers and cryptotephras allowed the correlation of OT0702-1 to AD 472 or AD 512 eruptions of Somma-Vesuvius, OT0702-2 to the FL eruption of Mount Etna, OT0702-3 to the Mercato from Somma-Vesuvius, OT0702-4 to SMP1-e/Y-3 eruption from the Campi Flegrei caldera, OT0702-5 to the Codola eruption (Somma-Vesuvius or Campi Flegrei), OT0702-6 to the Campanian Ignimbrite/Y-5 from the Campi Flegrei caldera, OT0702-7 to the Green Tuff/Y-6 eruption from Pantelleria Island, OT0702-8 to the X-5 eruption probably originating from the Campi Flegrei caldera, OT0702-9 to the X-6 eruption of generic Campanian origin, and OT0702-10 to the P-11 eruption from Pantelleria Island. The fairly well-known ages of these tephra layers and parent eruptions provide new data on the dispersal and deposition of these tephras and, furthermore, allow the establishment of a chronological framework for core Co1202 for a first interpretation of major sedimentological changes.

Description: The elemental stoichiometry of sea water and particulate organic matter is remarkably similar. This observation led Redfield to hypothesize that the oceanic ratio of nitrate to phosphate is controlled by the remineralization of phytoplankton biomass1. The Redfield ratio is used universally to quantitatively link the marine nitrogen and phosphorus cycles in numerous biogeochemical applications2,3,4. Yet, empirical and theoretical studies show that the ratio of nitrogen to phosphorus in phytoplankton varies greatly with taxa5,6 and growth conditions7,8,9. Here we present a dynamic five-box ecosystem model showing that non-Redfield utilization of dissolved nitrogen and phosphorus by non-nitrogen-fixing phytoplankton controls the magnitude and distribution of nitrogen fixation. In our simulations, systems dominated by rapidly growing phytoplankton with low nitrogen to phosphorus uptake ratios reduce the phosphorus available for nitrogen fixation. In contrast, in systems dominated by slow-growing phytoplankton with high nitrogen to phosphorus uptake ratios nitrogen deficits are enhanced, and nitrogen fixation is promoted. We show that estimates of nitrogen fixation are up to fourfold too high when non-Redfield uptake stoichiometries are ignored. We suggest that the relative abundance of fast- and slow-growing phytoplankton controls the amount of new nitrogen added to the ocean.

Description: This study investigates the types of subaqueous deposits that occur when hot pyroclastic flows turbulently mix with water at the shoreline through field studies of the Znp marine tephra in Japan and flume experiments where hot tephra sample interacted with water. The Znp is a very thick, pumice-rich density current deposit that was sourced from subaerial pyroclastic flows entering the Japan Sea in the Pliocene. Notable characteristics are well-developed grain size and density grading (lithic-rich base, pumice-rich middle, and ash-rich top), preponderance of sedimentary lithic clasts picked up from the seafloor during transport, fine ash depletion in coarse facies, and presence of curviplanar pumice clasts. Flume experiments provide a framework for interpreting the origin and proximity to source of the Znp tephra. On contact of hot tephra sample with water, steam explosions produced a gas-supported pyroclastic density current that advanced over the water while a water-supported density current was produced on the tank floor from the base of a turbulent mixing zone. Experimental deposits comprise proximal lithic breccia, medial pumice breccia, and distal fine ash. Experiments undertaken with cold, water-saturated slurries of tephra sample and water did not produce proximal lithic breccias but a medial basal lithic breccia beneath an upper pumice breccia. Results suggest the characteristics and variations in Znp facies were strongly controlled by turbulent mixing and quenching, proximity to the shoreline, and depositional setting within the basin. Presence of abundant curviplanar pumice clasts in submarine breccias reflects brittle fracture and dismembering that can occur during fragmentation at the vent or during quenching. Subsequent transport in water-supported pumiceous density currents preserves the fragmental textures. Careful study is needed to distinguish the products of subaerial versus subaqueous eruptions.

Description: Hundreds of Sepia officinalis were hatched and cultured through the life cycle in each of 13 populations. Two genetic lines were maintained: one for an unprecedented seven generations and another presently in its fourth. All generations—save one—produced animals in excess of 1·0 kg body weight. Seven of eight generations with adequate data records had mean weights of 1–2 kg, and the largest cuttlefish reared were a male 2·6 kg and a female 2·9 kg. Fecundity levels were high, but there was a trend towards decreased fertility in later generations, with fertilization rates dropping below 10%. In the 7th generation, most mature animals failed to engage in agonistic courtship and mating behaviour. Almost no normal eggs were laid and none was fertile, thus ending the lineage. Most culture took place at 20–24°C and temperature generally explained variations in life span duration: being of shorter length at higher temperatures. Life spans were consistently longer at 20°C and sizes were greater than predicted from previously published literature. In both lines there was a trend towards larger individuals and longer life spans in subsequent generations. Survival of hatchlings typically exceeded 90% for two months post-hatching, and survival averaged 50% or higher to sexual maturity when corrected for animals removed from the populations for experimental use.

Description: The exponentially increasing number of sequenced genomes necessitates fast, accurate, universally applicable and automated approaches for the delineation of prokaryotic species. We developed specI (species identification tool; http://www.bork.embl.de/software/specI/), a method to group organisms into species clusters based on 40 universal, single-copy phylogenetic marker genes. Applied to 3,496 prokaryotic genomes, specI identified 1,753 species clusters. Of 314 discrepancies with a widely used taxonomic classification, 〉62% were resolved by literature support.

Description: This article reports the results of a study of submarine groundwater discharge (SGD) to coastal waters of Majorca (NW Mediterranean). The overall aim is to evaluate the relevance of SGD of the island and chemically characterize the components that are supplied to the coastal waters through this pathway. Although other discharge areas are identified, we particularly focus on SGD in bays and areas of increased sea water residence time where effects of the discharges are expected to be most notable. Analysis at four selected embayments with different land-use characteristics indicated a link between human activities (mainly agriculture and urban) and compounds arriving to the coast. A pathway for these elements is the diffuse discharge along the shoreline, as suggested by the inverse relationship between salinity and nutrients in nearshore porewaters. A general survey was conducted at 46 sites around the island, and used dissolved radium as a qualitative indicator of SGD. Measurements of nutrients (P and N), pCO2 and TOC were performed to characterize the elements delivered to the coastal environment. Most nearshore samples showed 224Ra enrichment (mean ± SE, 7.0 ± 0.6 dpm 100 l−1) with respect to offshore waters (1.1 ± 0.2 dpm 100 l−1); however, 224Ra measurements along the coast were highly variable (1.0–38.1 dpm 100 l−1). Coastal samples with enhanced radium levels showed elevated pCO2 with respect to atmospheric concentrations, which together with high pCO2 in groundwater (〉5,000 ppm) indicates that SGD is an important vector of CO2 to coastal waters. Moreover, a relationship between 224Ra and phytoplankton biomass was established, suggesting an important impact of SGD on coastal productivity. The results presented here provide a first approximation of the SGD effect in the coastal waters of Majorca, and indicate that SGD could be an important source of nutrients and CO2 to the coast, strongly influencing the productivity and biogeochemical cycling of the coastal waters of Majorca.

Description: Escalation theory proposes enemy-related selection as the most relevant factor of natural selection among individual organisms. When hazardous to predators, prey might be considered enemies that influence predator evolution. Opisthobranch molluscs that prey on chemically defended prey are an interesting study case on this subject. Predation on chemically defended species paved the way for opisthobranchs to enter in an arms race, developing means to detoxify and/or excrete harmful compounds, which led to the sequestration of those compounds and their self-defensive use, an escalation of defenses. Here we aim to understand whether the opisthobranch predator is better protected than its chemically defended prey, using as predator–prey model, a nudibranch (Hypselodoriscantabrica) and the sponge it preys upon (Dysidea fragilis), and from which it obtains deterrent chemical compounds. Specimens of both species were collected on the Portuguese coast, and their crude extracts were analyzed and used in palatability tests. Nudibranchs revealed a higher natural concentration of crude extract, probably due to a progressive accumulation of the compounds. Both predator and prey extracts revealed similar mixtures of deterrent metabolites (furanosesquiterpenes). Palatability tests revealed a more effective deterrence in the nudibranch extracts because significant rejection rates were observed at lower concentrations than those necessary for the sponge extracts to have the same effect. We concluded that the predator is chemically better protected than its prey, which suggests that its acquisition of chemical defenses reveals a defensive escalation.

Description: The family Rhodobacteraceae can be considered a paradigm of modern taxonomy of prokaryotes. Taking into account the number of species and genera that conforms the family, together with the knowledge about their abundance and vast global distribution, it surprises that most of them have been described relatively recent to our days. Two notable exceptions are Rhodonostoc capsulatum (Molisch, Die purpurbakterien nach neuen untersuchungen, vols i–vii. G. Fischer, Jena, pp 1–95, 1907) and Micrococcus denitrificans Beijerinck and Minkman (Zentbl Bakteriol, Parasitenkd, Infektionskr Hyg. Abt II 25:30–63, 1910), early basonyms of Rhodobacter capsulatus and Paracoccus denitrificans, respectively. The fact that so many descriptions within this family are recent means that some studies have been concomitant and pose a challenge not only for pure taxonomic studies but also for interpreting other studies in which a rapidly evolving nomenclature had to be used anyway. The metabolic and ecological diversity of the group adds further complexity. In spite of all these difficulties, the picture is far from being a chaos and it can be considered an exciting and important bacterial group to study. Rhodobacteraceae are, fundamentally, aquatic bacteria that frequently thrive in marine environments. They comprise mainly aerobic photo- and chemoheterotrophs but also purple non-sulfur bacteria which perform photosynthesis in anaerobic environments. They are deeply involved in sulfur and carbon biogeochemical cycling and symbiosis with aquatic micro- and macroorganisms. One hundred genera are currently recognized as members of the family although the Stappia group, Ahrensia, Agaricicola, and Rhodothalassium do not belong, phylogenetically, to the family. The 90 other genera are distributed in 5 phylogenetic groups (the Rhodobacter, the Paracoccus, the Rhodovulum, the Amaricoccus, and the Roseobacter clades) that might be considered a family on its own.

Description: There have been decades, such as 2000–2009, when the observed globally averaged surface-temperature time series shows little increase or even a slightly negative trend1 (a hiatus period). However, the observed energy imbalance at the top-of-atmosphere for this recent decade indicates that a net energy flux into the climate system of about 1 W m−2 (refs 2, 3) should be producing warming somewhere in the system4,5. Here we analyse twenty-first-century climate-model simulations that maintain a consistent radiative imbalance at the top-of-atmosphere of about 1 W m−2 as observed for the past decade. Eight decades with a slightly negative global mean surface-temperature trend show that the ocean above 300 m takes up significantly less heat whereas the ocean below 300 m takes up significantly more, compared with non-hiatus decades. The model provides a plausible depiction of processes in the climate system causing the hiatus periods, and indicates that a hiatus period is a relatively common climate phenomenon and may be linked to La Niña-like conditions.

Description: Digital terrain models (DTMs), finding a wide range of applications in the exploration of water areas, are mainly created on the basis of bathymetric data from a multibeam echosounder. The estimation of DTM accuracy dependent on the choice of the survey parameters is difficult due to the lack of reference surface. These authors have developed the methodology of simulation called virtual survey, which enables examining how various parameters of the echosounder, survey and DTM construction algorithms affect the errors of the created models. They are aimed at precise estimation of the model accuracy and the optimization of depth measurement work. The article includes the results of the examination of the effect of parameters determining the density of measurement points on the accuracy of the obtained GRID model. It has been proved that a significant reduction of recorded data density leads to only a slight increase in the modeling error, which makes the bathymetric survey much more cost-effective.

Description: During a sea survey session performed using a multibeam echosounder millions of measurement points are generated. Sea surveys should be carried out in such a way, that the maximum accuracy of created seabed models (DTM) is achieved and the standards specified by the IHO S-44 guidelines are met. One of the requirements is so called full sea floor search, which means the ability of a system to detect all the cubic features at least 1 m in size. Spatial distribution of measurement points is irregular and the distances between closest data points are varying, depending on many factors (on survey parameters, depth or distance between the beam and the vessel). Due to those reasons, it is difficult for the users of hydrographic systems to evaluate the degree of coverage of seabed by measurement points, and therefore to confirm fulfilment of the normative requirements. As a solution we propose visualisation methods for measurement data collected in sea surveys. Specific features of such a visualisation are explained and a method for creating the images is presented, along with some exemplary results.

Description: Based on an empirical orthogonal function analysis of satellite altimeter data, guidance from numerical model results, and CANEK transport estimates, we propose an index, based on differences in satellite-measured sea surface height anomalies, for measuring the influence of Gulf of Mexico Loop Current intrusion on vertically integrated transport variability through the Yucatan Channel. We show that the new index is significantly correlated at low frequencies (cut-off 120 days) with the cable estimates of transport between Florida and the Bahamas. We argue that the physical basis for the correlation is the geometric connectivity between the Yucatan Channel and the Straits of Florida.

Description: Conceptual models predict a unimodal effect of consumer abundance on prey diversity with the highest diversity at intermediate consumer abundance (intermediate disturbance hypothesis). Consumer selectivity and prey productivity are assumed to be further important determinants. Preferential grazing on dominant prey species favoured by high nutrient supply is supposed to increase prey diversity, whereas the effect of consumers on prey diversity may be negative under low nutrient conditions (grazer reversal hypothesis). We tested the effect of four common consumers the isopod Idotea baltica, the amphipod Gammarus oceanicus, and the gastropods Littorina littorea and Rissoa membranacea on diversity and composition of epiphytes growing on eelgrass Zostera marina. Consumer density was manipulated (four levels: grazer free control, low, medium, high) based on abundances observed in eelgrass systems. Additionally, we manipulated nutrient supply (three levels) and the presence of Idotea in a factorial experiment. The impact of consumer abundance on epiphyte diversity varied depending on consumer identity and epiphyte evenness was affected rather than species number in this short-term experiment. Idotea reduced epiphyte diversity (Shannon-Wiener index H') and Gammarus increased epiphyte diversity. Littorina had no effect at low and medium abundance, but a negative effect in the high density treatment. Only Rissoa supported the conceptual models as it caused the proposed unimodal pattern in epiphyte diversity. The varying species-specific selectivity of the studied consumers is likely to explain their diverse impact on epiphyte diversity. Nutrients enhanced epiphyte diversity at medium enrichment, whereas higher nutrient supply reduced epiphyte diversity. The effect of Idotea changed from negative at low nutrient concentration to positive at higher nutrient supply, supporting the grazer reversal hypothesis. This study implies that consumer species identity and nutrient concentrations are important in controlling prey diversity and composition. Different consumer selectivity and changes in selectivity with growing consumer abundance and nutrient concentration are the causal factors for this effect.

Description: Grateloupia turuturu Yamada is an economically valuable red alga with great potential in nutraceuticals and pharmaceuticals. Filaments of G. turuturu are of primary importance in germplasm preservation and sporeling culture, although filaments were not present in its life cycle. In this study, effects of temperature (10, 15, 20, 25, and 30 °C) and irradiance (10, 30, 60, and 90 μmol photons m−2 s−1) with photoperiod 10:14 h (light/dark) on filament development were investigated. Our results indicated that 25 °C was the optimal temperature for the formation of discoid crusts regardless of the irradiance. Conditions of 20 °C and 60 μmol photons m−2 s−1 promoted the development of discoid crusts and formation of upright thalli.

Description: The fields of immunology, microbiology, nutrition and metabolism are rapidly converging. Here we expand on a diet-microbiota model as the basis for the greater incidence of asthma and autoimmunity in developed countries.

Description: The mammalian gastrointestinal tract, the site of digestion and nutrient absorption, harbors trillions of beneficial commensal microbes from all three domains of life. Commensal bacteria, in particular, are key participants in the digestion of food, and are responsible for the extraction and synthesis of nutrients and other metabolites that are essential for the maintenance of mammalian health. Many of these nutrients and metabolites derived from commensal bacteria have been implicated in the development, homeostasis and function of the immune system, suggesting that commensal bacteria may influence host immunity via nutrient- and metabolite-dependent mechanisms. Here we review the current knowledge of how commensal bacteria regulate the production and bioavailability of immunomodulatory, diet-dependent nutrients and metabolites and discuss how these commensal bacteria–derived products may regulate the development and function of the mammalian immune system.

Description: To the Editor: Mass spectrometry–based proteomics has become an important component of biological research. Numerous proteomics methods have been developed to identify and quantify the proteins in biological and clinical samples1, identify pathways affected by endogenous and exogenous perturbations2 and characterize protein complexes3. Despite successes, the interpretation of vast proteomics data…

Description: In bacteria, foreign nucleic acids are silenced by clustered, regularly interspaced, short palindromic repeats (CRISPR)--CRISPR-associated (Cas) systems. Bacterial type II CRISPR systems have been adapted to create guide RNAs that direct site-specific DNA cleavage by the Cas9 endonuclease in cultured cells. Here we show that the CRISPR-Cas system functions in vivo to induce targeted genetic modifications in zebrafish embryos with efficiencies similar to those obtained using zinc finger nucleases and transcription activator-like effector nucleases.

Description: Hydrothermal vents emit sulphur and metals to the ocean1. Particular attention has been paid to hydrothermal fluxes of iron2–4, a limiting micronutrient of marine primary production5. Vent-derived ironwas previously thought to rapidly oxidize and precipitate around vents6. However, organic matter can bind to and stabilize dissolved and particulate iron in hydrothermal plumes7–9, facilitating its dispersion into the open ocean10. Here, we report measurements of the chemical speciation of sulphide and iron in high-temperature fluids emanating from vents in the East Pacific Rise and the Eastern Lau Spreading Center. We show that pyrite nanoparticles—composed of iron and sulphur—account for up to 10% of the filterable iron (less than 200nm in size) in these fluids. We suggest that these particles form before the discharge of the vent fluid. We estimate that pyrite nanoparticles sink more slowly than larger plume particles, and are more resistant to oxidation than dissolved Fe(II) and FeS.We suggest that the discharge of iron in the form of pyrite nanoparticles increases the probability that vent-derived iron will be transported over long distances in the deep ocean.

Description: The microenvironmental dynamics of the microbial mat of black band disease (BBD) and its less virulent precursor, cyanobacterial patch (CP), were extensively profiled using microsensors under different light intensities with respect to O(2), pH and H(2)S. BBD mats exhibited vertical stratification into an upper phototrophic and lower anoxic and sulphidic zone. At the progression front of BBD lesions, high sulphide levels up to 4977 μM were measured in darkness along with lower than ambient levels of pH (7.43±0.20). At the base of the coral-BBD microbial mat, conditions were hypoxic or anoxic depending on light intensity exposure. In contrast, CP mats did not exhibit strong microchemical stratification with mostly supersaturated oxygen conditions throughout the mats at all light intensities and with levels of pH generally higher than in BBD. Two of three replicate CP mats were devoid of sulphide, while the third replicate showed only low levels of sulphide (up to 42 μM) present in darkness and at intermediate light levels. The level of oxygenation and sulphide correlated well with lesion migration rates, that is virulence of the mats, which were greater in BBD than in CP. The results suggest that biogeochemical microgradients of BBD shaped by the complex microbial community, rather than a defined pathogen, are the major trigger for high virulence and the associated derived coral mortality of this disease.

Description: Bacterial light production involves enzymes-luciferase, fatty acid reductase, and flavin reductase-and substrates-reduced flavin mononucleotide and long-chain fatty aldehyde-that are specific to bioluminescence in bacteria. The bacterial genes coding for these enzymes, luxA and luxB for the subunits of luciferase; luxC, luxD, and luxE for the components of the fatty acid reductase; and luxG for flavin reductase, are found as an operon in light-emitting bacteria, with the gene order, luxCDABEG. Over 30 species of marine and terrestrial bacteria, which cluster phylogenetically in Aliivibrio, Photobacterium, and Vibrio (Vibrionaceae), Shewanella (Shewanellaceae), and Photorhabdus (Enterobacteriaceae), carry lux operon genes. The luminescence operons of some of these bacteria also contain genes involved in the synthesis of riboflavin, ribEBHA, and in some species, regulatory genes luxI and luxR are associated with the lux operon. In well-studied cases, lux genes are coordinately expressed in a population density-responsive, self-inducing manner called quorum sensing. The evolutionary origins and physiological function of bioluminescence in bacteria are not well understood but are thought to relate to utilization of oxygen as a substrate in the luminescence reaction.

Description: Fertilization depends on distribution and aggregation patterns of sea urchins which influence gamete contact time and may potentially enhance their vulnerability to ocean acidification. In this study, we conducted fertilization experiments to assess the effects of selected pH scenarios on fertilization success of Strongylocentrotus droebachiensis, from Spitsbergen, Arctic. Acidification was achieved by aerating seawater with different CO2 partial pressures to represent pre-industrial and present conditions (measured ~180–425 µatm) and future acidification scenarios (~550–800, ~1,300, ~2,000 µatm). Fertilization success was defined as the proportion of successful/unsuccessful fertilizations per treatment; eggs were classified according to features of their fertilization envelope (FE), hyaline layer (HL) and achievement of cellular division. The diagnostic findings of specific pathological aberrations were described in detail. We additionally measured intracellular pH changes in unfertilized eggs exposed for 1 h to selected acidification treatments using BCECF/AM. We conclude that (a) acidified conditions increase the proportion of eggs that failed fertilization, (b) acidification may increase the risk of polyspermy due to failures in the FE formation supported by the occasional observation of multiple sperms in the perivitelline space and (c) irregular formation of the embryo may arise due to impaired formation of the HL. The decrease in fertilization success could be also related to the observed changes in intracellular pH at pCO2 ~ 1,000 μatm or higher.

Description: Bioturbation of bottom sediments at the sediment–water interface is currently gaining more attention in studies dealing with the functioning of aquatic ecosystems. Such bioturbation can be caused by a variety of benthic macroinvertebrates or benthivorous fish that forage and burrow various bottom tubes, holes and pits. Thus, the processes involved may either be a result of direct interception by benthic animals, e.g., through bioresuspension of particles or through food ingestion and biodeposition, or of other indirect effects, e.g., changes in the physical properties of sediments or through the constructions mentioned above, along with corresponding changes in pond ecosystem functioning. The most distinct effect of benthivorous fish bioturbation activities is an increase in the turbidity of the water, which can lead to many subsequent knock-on effects, including inhibition of phytoplankton and submersed macrophyte growth with resulting alterations in physico-chemical water conditions. The importance of benthic macroinvertebrates and fish in bioturbation processes is also indicated by an increase in the numbers of resting cyanobacterial colonies recruited due to bioturbation of bottom sediments.

Description: The 5th International Workshop on Modeling the Ocean (IWMO http://www.uib.no/en/IWMO2013/-58927/iwmo-2013-bergen-norway) was held in June 17–20, in Bergen, Norway. The historic city of Bergen is the gateway to the fjords and a center for oceanic research. The workshop was hosted by the University of Bergen and also sponsored by the Research Council of Norway. Approximately 80 researchers worldwide participated in the workshop. Professor Mellor, Princeton University, gave the keynote lecture. The 5th IWMO meeting in Bergen was the first IWMO held in Europe, followed on the footsteps of previous meetings, IWMO-2009 in Taipei, Taiwan (Oey et al. 2010a, b), IWMO-2010 in Norfolk, USA (Ezer et al. 2011), IWMO-2011 in Qingdao, China (Oey et al. 2013a), and IWMO-2012 in Yokohama, Japan (Oey et al. 2013b). The participants presented approximately 60 oral talks and 20 posters, covering a wide range of ocean modeling and data analysis topics, as described below. In the spirit of promoting young s ...

Description: The Adula Nappe in the Central Alps is a mixture of various pre-Mesozoic continental basement rocks, metabasics, ultrabasics, and Mesozoic cover rocks, which were pervasively deformed during Alpine orogeny. Metabasics, ultrabasics, and locally garnet–mica schists preserve eclogite-facies assemblages while the bulk of the nappe lacks such evidence. We provide garnet major-element data, Lu profiles, and Lu–Hf garnet geochronology from eclogites sampled along a north–south traverse. A southward increasing Alpine overprint over pre-Alpine garnets is observed throughout the nappe. Garnets in a sample from the northern Adula Nappe display a single growth cycle and yield a Variscan age of 323.8 ± 6.9 Ma. In contrast, a sample from Alpe Arami in the southernmost part contains unzoned garnets that fully equilibrated to Alpine high-pressure (HP) metamorphic conditions with temperatures exceeding 800 °C. We suggest that the respective Eocene Lu–Hf age of 34.1 ± 2.8 Ma is affected by partial re-equilibration after the Alpine pressure peak. A third sample from the central part of the nappe contains separable Alpine and Variscan garnet populations. The Alpine population yields a maximum age of 38.8 ± 4.3 Ma in line with a previously published garnet maximum age from the central nappe of 37.1 ± 0.9 Ma. The Adula Nappe represents a coherent basement unit, which preserves a continuous Alpine high-pressure metamorphic gradient. It was subducted as a whole in a single, short-lived event in the upper Eocene. Controversial HP ages and conditions in the Adula Nappe may result from partly preserved Variscan assemblages in Alpine metamorphic rocks.

Description: Ecosystems and their biodiversity have to be protected and preserved as sources of services and goods. The human population controls and modifies ecosystems to improve its health conditions and welfare. The consequences of human activities should be carefully monitored and ecosystems should be managed to protect all of the species and preserve their functioning. The development of strategies for ecosystem management benefits from the use of computational techniques to model the dynamics of species that interact with their abiotic and biotic environment. Life scientists and computer scientists need to work together to define and analyse ecosystem models. However, there is a multifaceted gap between the approaches used in life science and those used in computer science. Such gap is both cultural and technical, and results in a number of challenges. In this paper we identify these challenges and provide technical and cultural proposals for solving them.

Description: A multidisciplinary analysis of intraplate volcanic complexes interbedded with shallow and deeper marine sediments of a Late Miocene carbonate platform (Iblean Plateau, Sicily) has allowed a detailed paleo-environmental reconstruction. Our approach includes sedimentology, physical volcanology, stratigraphy, geochemistry/mineralogy, paleontology and 40Ar/39Ar dating. Four volcanic complexes are distinguished from each other. Two comprise an eastern shallow water platform (diatreme field and Carlentini complex) and two a western deeper water environment representing a seamount belt on the carbonate ramp (Valle Guffari seamount and Mineo complex). The late Miocene volcanism was not time-equivalent: episodic eruptions took place from the Late Tortonian (ca. 9.38 Ma at Mt. Carrubba) to Early Messinian (ca. 6.46 Ma at Valle Guffari). Explosive volcanism of the diatreme field may be related geodynamically to the period of periodic sea-level oscillations at the onset of the Messinian Salinity Crisis. Marine diatomites preserved in the crater areas of two diatremes are the only remnants of Early Messinian diatomites in the eastern Iblean Mountains.

Description: Meltponds on Arctic sea ice have previously been reported to be devoid of marine metazoans due to fresh-water conditions. The predominantly dark frequently also green and brownish meltponds observed in the Central Arctic in summer 2007 hinted to brackish conditions and considerable amounts of algae, possibly making the habitat suitable for marine metazoans. Environmental conditions in meltponds as well as sympagic meiofauna in new ice covering pond surfaces and in rotten ice on the bottom of ponds were studied, applying modified techniques from sea-ice and under-ice research. Due to the very porous structure of the rotten ice, the meltponds were usually brackish to saline, providing living conditions very similar to sub-ice water. The new ice cover on the surface had similar characteristics as the bottom layer of level ice. The ponds were thus accessible to and inhabitable by metazoans. The new ice cover and the rotten ice were inhabited by various sympagic meiofauna taxa, predominantly ciliates, rotifers, acoels, nematodes and foraminiferans. Also, sympagic amphipods were found on the bottom of meltponds. We suggest that, in consequence of global warming, brackish and saline meltponds are becoming more frequent in the Arctic, providing a new habitat to marine metazoans.

Description: Prey regurgitation during capture is a potential important confounding effect in fish dietary ecology studies as it may lead to overestimation of stomach vacuity and underestimation of prey consumption. This study investigates patterns of prey regurgitation and stomach vacuity among five grouper and three snapper species in shallow water off French Polynesia and tests the effectiveness of piercing swim-bladders after capture as a method to prevent regurgitation. Groupers exhibited a moderate overall regurgitation rate of 15.6% of full stomachs and a high true (i.e., after accounting for regurgitation) stomach vacuity rate of 40.5%. In contrast, snappers showed high regurgitation (mean 31.7%) and low true stomach vacuity (14.6%). Not accounting for regurgitation would have resulted in a moderate overestimation of stomach vacuity in groupers, but an almost 3-fold overestimation in snappers. Swim-bladder decompression by piercing after capture prove a highly effective method to reduce regurgitation (more than 2-fold for groupers and near 8-fold for snappers). This study enables a more general understanding of prey regurgitation in two commercially valuable fish families, thus improving understanding of the dietary ecology of these fishes. This information is particularly important in the context of prey consumption estimates and subsequent estimations of the impact of fish predators on ecosystems.

Description: The temporal variation in the stable carbon and nitrogen isotope ratios of particulate organic matter (POM) in the Rhone River was investigated on a monthly basis during a 2-year period (2004–2005). In spite of high month-to-month variation, interannually consistent seasonal trends appeared, with significantly lower δ13C (〈−28.2‰) in spring than in the other seasons. In contrast, δ15N did not exhibit significant temporal variation. In spring and summer, high chlorophyll a and b concentrations were associated with low C/N values (〈8) and a high percentage of organic carbon (%C) and organic nitrogen (%N), testifying to high development of autochthonous riverine phytoplankton (mainly diatoms and chlorophytes). In fall and winter, higher δ13C (〉−27.2‰) and C/N (〉8) values, and lower %C, %N, and chlorophylls concentrations indicated the predominance of allochthonous terrestrial detritus material in the river POM. The lower δ13C values recorded in spring–summer, when the phytoplankton biomass was high, were related to the lower carbon isotopic signatures of freshwater diatoms and chlorophytes compared to those of terrestrial plants. Overall, Rhone River POM was mainly composed of terrestrially derived material (90%), with autochthonous phytoplankton representing only 10% as a mean, in spite of a higher mean contribution of phytoplankton (27%) to river POM in summer.

Description: Nutritional imbalances between predator and prey are the rule rather than the exception at the lower end of food webs. We investigated the role of different grazers in the propagation of nutritionally imbalanced primary production by using the same primary producers in a three-trophic-level food chain and a four-trophic-level food chain experimental setup. The three-trophic-level food chain consisted of a classic single-cell primary producer (Rhodomonas salina), a metazoan grazer (the copepod Acartia tonsa) and a top predator (the jellyfish Gonionemus vertens), while we added a protozoan grazer (Oxyrrhis marina) as primary consumer to the food chain to establish the four-trophic-level food chain. This setup allowed us to investigate how nutrient-limitation effects change from one trophic level to another, and to investigate the performance of two components of our experimental food chains in different trophic positions. Stoichiometry and fatty acid profiles of the algae showed significant differences between the nutrient-depleted [no N and no P addition (−P), respectively] and the nutrient-replete (f/2) treatments. The differences in stoichiometry could be traced when O. marina was the first consumer. Copepods feeding on these flagellates were not affected by the nutritional imbalance of their prey in their stoichiometry, their respiration rates nor in their developmental rates. In contrast, when copepods were the primary consumer, those reared on the −P algae showed significantly higher respiration rates along with significantly lower developmental rates. In neither of our two experimental food chains did the signals from the base of the food chains travel up to jelly fish, our top predator.

Description: A one-dimensional model is used to analyze, at the local scale, the response of the equatorial Atlantic Ocean under different meteorological conditions. The study was performed at the location of three moored buoys of the Pilot Research Moored Array in the Tropical Atlantic located at 10° W, 0° N; 10° W, 6° S; and 10° W, 10° S. During the EGEE-3 (Etude de la circulation océanique et de sa variabilité dans le Golfe de Guinee) campaign of May-June 2006, each buoy was visited for maintenance during 2 days. On board the ship, high-resolution atmospheric parameters were collected, as were profiles of temperature, salinity, and current. These data are used here to initialize, force, and validate a one-dimensional model in order to study the diurnal oceanic mixed-layer variability. It is shown that the diurnal variability of the sea surface temperatures is mainly driven by the solar heat flux. The diurnal response of the near-surface temperatures to daytime heating and nighttime cooling has an amplitude of a few tenths of degree. The computed diurnal heat budget experiences a net warming tendency of 31 and 27 W m‑2 at 0° N and 10° S, respectively, and a cooling tendency of 122 W m‑2 at 6° S. Both observed and simulated mixed-layer depths experience a jump between the nighttime convection phase and the well-stabilized diurnal water column. Its amplitude changes dramatically depending on the meteorological conditions occurring at the stations and reaches its maximum amplitude (~50 m) at 10° S. At 6° and 10° S, the presence of barrier layers is observed, a feature that is clearer at 10° S. Simulated turbulent kinetic energy (TKE) dissipation rates, compared to independent microstructure measurements, show that the model tracks their diurnal evolution reasonably well. It is also shown that the shear and buoyancy productions and the vertical diffusion of TKE all contribute to the supply of TKE, but the buoyancy production is the main source of TKE during the period of the simulation.

Description: Background, aim, and scope Dissolved humic substances (HSs) are exogenous stressors to aquatic plants and animals which activate a variety of transcriptional and biochemical reactions or block photosynthesis. While there are consistent indications which structures may lead to reduced photosynthetic activity, there is much less clear information available on which HS structures or building blocks act as stressors in animals. Consequently, this work was designed to comparatively study the impact of natural organic matter (NOMs) from different sources on major anti-stress mechanisms in one single animal. We utilized major antioxidant responses and relative expression levels of stress proteins (small HSPs and HSP70) and expected that different HSs provoke different response patterns. Materials and methods We tested the freshwater amphipod Gammarus pulex which was collected from several shallow creeks in Northern Germany. All specimens were maintained in aerated 5-L tanks with filtered water from their natural environment at 10°C with prior acclimation. Animals were fed ad libitum with a commercial preparation once every second day. The exposure water was exchanged with the same frequency. NOMs were isolated from three different sources: two from small brown-water lakes in Northern Germany by reverse osmosis and the third one as an aqueous extract from a black layer of a Brazilian sandbar soil (State of Rio de Janeiro). The rationale was to apply NOMs of contrasting quality. Chemical fingerprint features of the NOMs were taken by high-performance size exclusion chromatography. As stress parameters in the animals, the activities of peroxidase and catalase were recorded quantitatively, and stress proteins, HSP70, as well as small α-crystalline HSPs were analyzed semiquantitatively. Results The three NOMs clearly differed in molecular masses, humic substance contents, the moieties of polysaccharides, and low-molecular-weight substances. With the exception of one short-term response, the peroxidase activity increased after 3 to 12 h exposure, whereas the catalase activity did not show any significant modulation. With one exception, the stress protein expression increased after 30 min exposure in a biphasic pattern, and the sHSPs responded less strongly than HSP70. Discussion Although the quality of the exposed NOMs differs significantly, a rather uniform response pattern appears in the animals. Obviously, the contrasting contents of HSs and polysaccharides did not affect the anti-stress response of the exposed gammarids which is in contrast to previous lifespan studies with Caenorhabditis elegans. Furthermore, all NOM sources led to increased contents of both HSP70 and sHSPs. To the best of our knowledge, this is the first protein study to show that also small HSPs are expressed when the animals are exposed against humic material. Conclusions Since the response patterns of the exposed gammarids, in contrast to the initial hypothesis, are rather uniform and since HSs are parts of life on Earth, we furthermore presume that they may have been a primordial exogenous trigger for the development of anti-stress systems in exposed organisms. Recommendations and perspectives Effect studies of chemical stresses on organisms should consider exposure to both natural triggers and xenobiotic compounds in low concentrations—in order to prospectively differentiate between these triggers and, subsequently, classify them.

Description: The tissue distribution and ontogeny of Na+/K+-ATPase has been examined as an indicator for ion-regulatory epithelia in whole animal sections of embryos and hatchlings of two cephalopod species: the squid Loligo vulgaris and the cuttlefish Sepia officinalis. This is the first report of the immunohistochemical localization of cephalopod Na+/K+-ATPase with the polyclonal antibody α (H-300) raised against the human α1-subunit of Na+/K+-ATPase. Na+/K+-ATPase immunoreactivity was observed in several tissues (gills, pancreatic appendages, nerves), exclusively located in baso-lateral membranes lining blood sinuses. Furthermore, large single cells in the gill of adult L. vulgaris specimens closely resembled Na+/K+-ATPase-rich cells described in fish. Immunohistochemical observations indicated that the amount and distribution of Na+/K+-ATPase in late cuttlefish embryos was similar to that found in juvenile and adult stages. The ion-regulatory epithelia (e.g., gills, excretory organs) of the squid embryos and paralarvae exhibited less differentiation than adults. Na+/K+-ATPase activities for whole animals were higher in hatchlings of S. officinalis (157.0 ± 32.4 µmol gFM−1 h−1) than in those of L. vulgaris (31.8 ± 3.3 µmol gFM−1 h−1). S. officinalis gills and pancreatic appendages achieved activities of 94.8 ± 18.5 and 421.8 ± 102.3 µmolATP gFM−1 h−1, respectively. High concentrations of Na+/K+-ATPase in late cephalopod embryos might be important in coping with the challenging abiotic conditions (low pH, high pCO2) that these organisms encounter inside their eggs. Our results also suggest a higher sensitivity of squid vs. cuttlefish embryos to environmental acid-base disturbances.

Description: The phytoplankton of the Bahía Blanca Estuary, Argentina, has been surveyed since 1978. Chlorophyll a, phytoplankton abundance, species composition and physico-chemical variables have been fortnightly recorded. From 1978 to 2002, a single winter–early spring diatom bloom has dominated the main pattern of phytoplankton interannual variability. Such pattern showed noticeable changes since 2006: the absence of the typical winter bloom and changes in phenology, together with the replacement of the dominant blooming species, i.e. Thalassiosira curviseriata, and the appearance of different blooming species, i.e. Cyclotella sp. and Thalassiosira minima. The new pattern showed relatively short-lived diatom blooms that spread throughout the year. In addition, shifts in the phytoplankton size structure toward small-sized diatoms, including the replacement of relatively large Thalassiosira spp. by small Cyclotella species and Chaetoceros species have been noticed. The changes in the phenology and composition of the phytoplankton are mainly attributed to warmer winters and the extremely dry weather conditions evidenced in recent years in the Bahía Blanca area. Changing climate has modified the hydrological features in the inner part of the estuary (i.e. higher temperatures and salinities) and potentially triggered the reorganization of the phytoplankton community. This long-term study provides evidence on species-specific and structural changes at the bottom of the pelagic food web likely related to the recent hydroclimatic conditions in a temperature estuary of the southwestern Atlantic.

Description: Somatic mutations are an underappreciated source of genetic variation within multi-cellular organisms. The resulting genetic mosaicism should be particularly abundant in large clones of vegetatively propagating angiosperms. Little is known on the abundance and ecological correlates of genetic mosaicism in field populations, despite its potential evolutionary significance. Because sexual reproduction restores genetic homogeneity, we predicted that in facultatively clonally reproducing organisms, the prevalence of genetic mosaicism increases with increasing clonality. This was tested among 33 coastal locations colonized by the ecologically important marine angiosperm Zostera marina, ranging from Portugal to Finland. Genetic mosaics were detectable as complex microsatellite genotypes at two hypervariable loci that revealed additional mosaic alleles, suggesting the presence of one or more divergent cell lineages within the same ramet. The proportions of non-mosaic genotypes in a population sharply decreased below a clonal richness of 0.2. Accordingly, more genetic mosaics were found at the southern and northern limit of the distribution of Z. marina in Europe where sexual reproduction is rare or absent. The genetic mosaics observed at neutral microsatellite markers suggest the possibility of within-clone variation at selectively relevant loci and supports the notion that members of clones are seldom genetically identical.

Description: A new species of the pelagic marine copepod family Oncaeidae, Oncaea serrulata, is described from the Mediterranean Sea. The species belongs to the notopus-group of Oncaeidae, which are characterized by a long, free exopod on leg 5. It differs from Oncaea notopus Giesbrecht 1891 and any other described species of this group by a combination of morphological characters, including: (1) the relative lengths of distal endopod spines on swimming legs 2 and 3, (2) the denticulate ornamentation of the exopod segment and the two exopodal setae on leg 5, (3) the proportional lengths of the caudal setae, and (4) the comparatively small body length. The species occurs widespread in the Mediterranean Sea in mesopelagic and deep-sea layers down to 3,000 m depth and was also found in near-bottom sediment traps moored at a bottom depth of 2,347 m in the Ligurian Sea. O. serrulata appears to be the only representative of the notopus-group in the Mediterranean Sea and seems to have consistently been confounded with the allegedly cosmopolitan O. notopus Giesbrecht in most earlier studies in this area. The taxonomic history of Giesbrecht’s O. notopus, which was originally described from the Pacific, is summarized and morphological identification parameters applicable for the species identification of notopus-type oncaeids are discussed. In the future, identification may be facilitated by using genetic barcodes in comparison with those recently analysed for the Mediterranean O. serrulata (as Oncaea sp. 7 sensu Böttger-Schnack 1997). Published data on the zoogeographical and vertical distribution as well as the abundance of notopus-type oncaeids in the Mediterranean Sea are reviewed. Possible causes for the lack of positive records of this taxon in Mediterranean studies earlier than 1980 are discussed.

Description: Regional erosion of the Rock Garden ridge top, a bathymetric high within New Zealand’s Hikurangi Subduction Margin, is likely associated with its gas hydrate system. Seismic data reveal gas pockets that appear partially trapped beneath the shallow base of gas hydrate stability. Steady-state fluid flow simulations, conducted on detailed two-dimensional geological models, reveal that anomalous fluid pressure can develop close to the sea floor in response to lower-permeability hydrate-bearing sediments and underlying gas pockets. Transient simulations indicate that large-scale cycling of fluid overpressure may occur on time scales of a few to tens of years. We predict intense regions of hydro-fracturing to preferentially develop beneath the ridge top rather than beneath the flanks, due to more pronounced overpressure generation and gas migration through hydrate-bearing sediments. Results suggest that sediment weakening and erosion of the ridge top by hydro-fracturing could be owed to fluid dynamics of the shallow gas hydrate system.

Description: Detailed geological and petrological-geochemical study of rocks of the lava complex of Young Shiveluch volcano made it possible to evaluate the lava volumes, the relative sequence in which the volcanic edifice was formed, and the minimum age of the onset of eruptive activity. The lavas of Young Shiveluch are predominantly magnesian andesites and basaltic andesites of a mildly potassic calc-alkaline series (SiO2 = 55.0–63.5 wt %, Mg# = 55.5–68.9). Geologic relations and data on the mineralogy and geochemistry of rocks composing the lava complex led us to conclude that the magnesian andesites of Young Shiveluch volcano are of hybrid genesis and are a mixture of silicic derivatives and a highly magnesian magma that was periodically replenished in the shallow-depth magmatic chamber. The fractional crystallization of plagioclase and hornblende at the incomplete segregation of plagioclase crystals from the fractionating magmas resulted in adakitic geochemical parameters (Sr/Y = 50–71, Y 〈 18 ppm) of the most evolved rock varieties. Our results explain the genesis of the rock series of Young Shiveluch volcano without invoking a model of the melting of the subducting Pacific slab at its edge.

Description: The production of defence metabolites is assumed to be costly in metabolic terms. If this holds true, low-light stress should reduce the ability of seaweeds to defend themselves chemically against herbivory and fouling. We investigated the effect of energy limitation on the defensive status of seaweeds by assessing their attractiveness to mesograzers and their activity against a bivalve macrofouler in comparison with non-stressed conspecifics. The macroalgae Codium decorticatum (Woodw.) M. Howe, Osmundaria obtusiloba (C. Agardh) R. E. Norris, Pterocladiella capillacea (S. G. Gmel.) Santel. and Hommer., Sargassum vulgare C. Agardh and Stypopodium zonale (Lamour.) Papenf. collected at the southeastern Brazilian coast were exposed to six levels of irradiation (between 1 and 180 μmol photons m−2 s−1) for 10–14 days. After this period, algae from all treatment levels were: (a) processed as artificial food and offered to an amphipod community dominated by Elasmopus brasiliensis Dana and (b) extracted to test for differences in settlement rates of the fouling mussel Perna perna L. on filter paper loaded with the crude extracts. Generally, photosynthesis rates and growth were reduced under low light conditions. Attractiveness to herbivores and macrofoulers, however, was insensitive to energy limitation. We discuss possible explanations for the observed absence of a relationship between light availability and algal defence including the change in nutritional value of the algal tissue, the allocation of resources towards defence instead of growth and the absence of costs for defence.

Description: Pore water profiles from 24 stations in the South Atlantic (located in the Guinea, Angola, Cape, Guyana, and Argentine basins) show good correlations of oxygen and silicon, suggesting microbially mediated dissolution of biogenic silica. We used simple analytical transport and reaction models to show the tight coupling of the reconstructed process kinetics of aerobic respiration and silicon regeneration. A generic transport and reaction model successfully reproduced the majority of Si pore water profiles from aerobic respiration rates, confirming that the dissolution of biogenic silica (BSi) occurs proportionally to O2 consumption. Possibly limited to well-oxygenated sediments poor in BSi, benthic Si fluxes can be inferred from O2 uptake with satisfactory accuracy. Compared to aerobic respiration kinetics, the solubility of BSi emerged as a less influential parameter for silicon regeneration. Understanding the role of bacteria for silicon regeneration requires further investigations, some of which are outlined. The proposed aerobic respiration control of benthic silicon cycling is suitable for benthic–pelagic models. The empirical relation of BSi dissolution to aerobic respiration can be used for regionalization assessments and estimates of the silicon budget to in crease the understanding of global primary and export production patterns.

Description: The pelagic marine copepod family Oncaeidae is highly diversified (over 100 species worldwide) and includes a great number of sibling species, which are difficult to identify morphologically, because of their very small size (0.18–1.2 mm total length as adults). Global investigations of oncaeid biodiversity are severely hampered by insufficient taxonomic knowledge, in particular for species which have first been described from the European Mediterranean Sea (type locality). Many of these species have been reported as key taxa of small-sized copepod communities in very distant oceanic regions. However, due to the taxonomic uncertainties it cannot be excluded that at least some of these allegedly cosmopolitan species in reality represent a complex of distinct, yet closely related, species. To improve the basis for the identification of Oncaeidae of Mediterranean origin, new diagnostic characters in combination with traditional methods were applied in the present study. Copepods were sampled with fine nets of 0.1 mm mesh size down to a maximum depth of 1,000 m on a west-east-transect in the Mediterranean Sea. Oncaeid species and form variants were predefined morphologically and the genetic identity of the morphospecies was analysed by about 650 and 500 bp region of the mitochondrial COI and 12S srRNA gene sequence, respectively (barcoding). A total of 67 individuals from 24 oncaeid species and forms were successfully analysed, including 12 species and one form of Mediterranean origin. For Oncaeidae, the 12S amplification turned out to be more successful (23 species) than the COI amplification (13 species and 1 form). Together, the morphological and molecular results are discussed with respect to three topics: (1) confirmation of a genetic distinction of three Triconia species, which have been interpreted as sibling species by morphological characters, (2) genetic distance of species within the ovalis-complex of oncaeids and (3) the taxonomic status of two form variants of Oncaea mediterranea (Claus).

Description: We analyzed bare human footprints in Holocene tuff preserved in two pits in the Acahualinca barrio in the northern outskirts of Managua (Nicaragua). Lithology, volcanology, and age of the deposits are discussed in a companion paper (Schmincke et al. Bull Volcanol doi: 10.1007/s00445-008-0235-9, 2008). The footprint layer occurs within a series of rapidly accumulated basaltic–andesitic tephra that is regionally correlated to the Masaya Triple Layer Tephra. The people were probably trying to escape from a powerful volcanic eruption at Masaya Caldera 20 km farther south that occurred at 2.1 ka BP. We subdivided the swath of footprints, up to 5.6 m wide, in the northern pit (Pit I) into (1) a central group of footprints made by about six individuals, the total number being difficult to determine because people walked in each other’s footsteps one behind the other and (2) two marginal groups on either side of the central group with more widely spaced tracks. The western band comprises tracks of three adjacent individuals and an isolated single footprint farther out. The eastern marginal area comprises an inner band of deep footprints made by three individuals and, farther out, three clearly separated individuals. We estimate the total number of people as 15–16. In the southern narrow and smaller pit (Pit II), we recognize tracks of ca. 12 individuals, no doubt made by the same group. The group represented in both pits probably comprised male and female adults, teenagers and children based on differences in length of footprints and of strides and depth of footprints made in the soft wet ash. The smallest footprints (probably made by children) occur in the central group, where protection was most effective. The footprint layer is composed of a lower 5–15-cm thick, coarse-grained vesicle tuff capped by a medium to fine-grained tuff up to 3 cm thick. The surface on which the people walked was muddy, and the soft ash was squeezed up on the sides of the foot imprints and between toes. Especially, deep footprints are mainly due to local thickening of the water-rich ash, multiple track use, and differences in weight of individuals. The excellent preservation of the footprints, ubiquitous mudcracks, sharp and well-preserved squeeze-ups along the margins of the tracks and toe imprints, and the absence of raindrop impressions all suggest that the eruption occurred during the dry season. The people walked at a brisk pace, as judged from the tight orientation of the swath and the length of the strides. The directions of a major erosional channel in the overlying deposits that probably debouched into Lake Managua and the band of footprints are strictly parallel, indicating that people walked together in stride along the eastern margin of a channel straight toward the lake shore, possibly a site with huts and/or boats for protection and/or escape.

Description: We propose a new method for obtaining average velocities and eddy diffusivities from Lagrangian data. Rather than grouping the drifter-derived velocities in geographical bins, we group them by nearest-neighbor distance using a clustering algorithm. This yields sets with approximately the same number of observations, covering unequal areas. A major advantage is that, because the number of observations is the same for the clusters, the statistical accuracy is more uniform than with geographical bins. We illustrate the technique using synthetic data from a stochastic model, employing a realistic mean flow. The latter represents the surface currents in the Nordic Seas and is strongly inhomogeneous in space. We use the clustering algorithm to extract the mean velocities and diffusivities and compare the results with the corresponding quantities from the stochastic model. We perform a similar comparison with the means and diffusivities obtained with geographical bins. Clustering is more successful at capturing the mean flow and improves convergence in the eddy diffusivity estimates. We discuss both the advantages and shortcomings of the new method.

Description: The influence of the natural variability of the Atlantic meridional overturning circulation (AMOC) on the atmosphere is studied in multi-centennial simulations of six global climate models, using Maximum Covariance Analysis (MCA). In all models, a significant but weak influence of the AMOC changes is found during the Northern Hemisphere cold-season, when the ocean leads the atmosphere by a few years. Although the oceanic pattern slightly varies, an intensification of the AMOC is followed in all models by a weak sea level pressure response that resembles a negative phase of the North Atlantic Oscillation (NAO). The signal amplitude is typically 0.5 hPa and explains about 10% of the yearly variability of the NAO in all models. The atmospheric response seems to be due primarily due to an increase of the heat loss along the North Atlantic Current and the subpolar gyre, associated with an AMOC-driven warming. Sea-ice changes appear to be less important. The stronger heating is associated to a southward shift of the lower-tropospheric baroclinicity and a decrease of the eddy activity in the North Atlantic storm track, which is consistent with the equivalent barotropic perturbation resembling the negative phase of the NAO. This study thus provides some evidence of an atmospheric signature of the AMOC in the cold-season, which may have some implications for the decadal predictability of climate in the North Atlantic region.

Description: Subfossil Cladocera were sampled and examined from the surface sediments of 35 thermokarst lakes along a temperature gradient crossing the tree line in the Anabar-river basin in northwestern Yakutia, northeastern Siberia. The lakes were distributed through three environmental zones: typical tundra, southern tundra and forest tundra. All lakes were situated within the continuous permafrost zone. Our investigation showed that the cladoceran communities in the lakes of the Anabar region are diverse and abundant, as reflected by taxonomic richness, and high diversity and evenness indices (H = 1.89 ± 0.51; I = 0.8 ± 0.18). CONISS cluster analysis indicated that the cladoceran communities in the three ecological zones (typical tundra, southern tundra and forest-tundra) differed in their taxonomic composition and structure. Differences in the cladoceran assemblages were related to limnological features and geographical position, vegetation type, climate and water chemistry. The constrained redundancy analysis indicated that TJuly, water depth and both sulphate (SO4 2−) and silica (Si4+) concentrations significantly (p ≤ 0.05) explained variance in the cladoceran assemblage. TJuly featured the highest percentage (17.4 %) of explained variance in the distribution of subfossil Cladocera. One of the most significant changes in the structure of the cladoceran communities in the investigated transect was the replacement of closely related species along the latitudinal and vegetation gradient. The results demonstrate the potential for a regional cladoceran-based temperature model for the Arctic regions of Russia, and for and Yakutia in particular.

Description: A large monothalamous foraminiferan, Toxisarcon taimyr sp. nov., has been isolated from the benthic samples from the Kara Sea inner shelf near the mouth of Yenisey river estuary, at a depth of 50–100 m. In its overall morphology, the new species closely resembles T. synsuicidica, one of the two species of Toxisarcon described to date. It possesses a large irregularly shaped cell body, covered by a thin layer of a fibrous organic coating. Numerous reticulopodia typically extend from all over the cell surface; the species is very motile and rapidly changes cell shape. Long and thick reticulopodial bundles form in the direction of movement. In the phylogenetic tree based on partial small-subunit ribosomal DNA (SSU rDNA) sequences, T. taimyr branches together with the two other known species of Toxisarcon within the clade C of monothalamous foraminifera.

Description: The Hydrograph model (a distributed process-based model) was applied to the simulation of soil freeze-thaw and runoff processes, to assess the viability of the model approach and the influence of specific environmental factors in a permafrost environment. Three mountainous permafrost watersheds were studied, at the Kolyma Water Balance Station in north-eastern Russia. The watersheds include rocky talus, mountainous tundra and moist larch-forest landscape regimes, and they were modelled at daily time-steps for the period 1971–1984. Simulated results of soil freeze-thaw depth and runoff showed reasonable agreement with observed values. This study reveals and mathematically describes the dependence of surface and subsurface flow on thawing depth and landscape characteristics. Process analysis and modelling in permafrost regions, including ungauged basins, is suggested, with observable properties of landscapes being used as model parameters, combined with an appropriate level of physically based conceptualization.

Description: Concerns about the slow pace of climate mitigation have led to renewed dialogue about solar-radiation management, which could be achieved by adding reflecting aerosols to the stratosphere1, 2, 3, 4, 5, 6. Modelling studies suggest that solar-radiation management could produce stabilized global temperatures and reduced global precipitation4, 5, 6. Here we present an analysis of regional differences in a climate modified by solar-radiation management, using a large-ensemble modelling experiment that examines the impacts of 54 scenarios for global temperature stabilization. Our results confirm that solar-radiation management would generally lead to less extreme temperature and precipitation anomalies, compared with unmitigated greenhouse gas emissions. However, they also illustrate that it is physically not feasible to stabilize global precipitation and temperature simultaneously as long as atmospheric greenhouse gas concentrations continue to rise. Over time, simulated temperature and precipitation in large regions such as China and India vary significantly with different trajectories for solar-radiation management, and they diverge from historical baselines in different directions. Hence, it may not be possible to stabilize the climate in all regions simultaneously using solar-radiation management. Regional diversity in the response to different levels of solar-radiation management could make consensus about the optimal level of geoengineering difficult, if not impossible, to achieve.