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  • Springer  (107)
  • Annual Reviews
  • Oxford University Press
  • Periodicals Archive Online (PAO)
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  • 2020-2023  (185)
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  • 1
    Publication Date: 2022-03-02
    Description: To provide a contribution to the Thematic Strategy for Soil Protection, here we present the results of a study focused on the potentially toxic elements (PTE) content in agricultural soils’ representative for the Mediterranean region. To reach this aim, samples of 22 Italian (NE Peloritani Mountains, Sicily) and 18 Turkish (Amik Plain, Hatay) soils were collected and analyzed to evaluate their PTE content. The Italian and Turkish sites have been selected because they represent very important cultivation zones. In Amik Plain (Turkey), the dominant crops consist of cotton, wheat, corn and olives, whereas in NE Peloritani Mountains, Sicily (Italy), an appreciate citrus variety, known as the “Interdonato lemon”, guaranteed by Protected Geographical Indication label, is produced. The collected results include: (1) the assessment of PTE levels in soils; (2) the identifcation of the PTE sources; (3) the relationships between PTE contents and soil properties (pH, electrical conductivity, organic matter, CaCO3, and clay). Several multivariate statistical methods such as correlation matrix, cluster analysis and main component analysis were applied to individuate the anthropogenic vs natural origin of the PTE sources. The detected PTE levels are in decreasing order Mn〉Zn〉V〉Cr〉Cu〉Ni〉As〉Pb〉Co〉Sb〉Se〉Cd for the Italian soils, and Mn〉 Ni〉V〉Zn〉Cr〉Cu〉Pb〉Co〉As〉Se〉Sb〉Cd for the Turkish soils. The overall obtained results allowed to defne: (a) a main lithogenic source for PTE detected in the Italian soils, except for Zn which origin is also associated to anthropogenic input; (b) a lithogenic origin for all of the PTE detected for the Turkish soils, with an associate anthropogenic contribution for Cr, Ni, V, Cu and V. The results obtained in this work enhance the knowledge in the individuation of PTE pollution sources in agricultural soils of the European Mediterranean region.
    Description: Published
    Description: 499
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 2
    Publication Date: 2022-03-02
    Description: Crystalline rocks can produce dangerous radiation levels on the basis of their content in radioisotopes. Here, we report radiological data from 10 metamorphic and igneous rock samples collected from the crystalline basement of the Peloritani Mountains (southern Italy). In order to evaluate the radiological properties of these rocks, the gamma radiation and the radon emanation have been measured. Moreover, since some of these rocks are employed as building materials, we assess the potential hazard for population connected to their use. Gamma spectroscopy was used to measure the 226Ra, 232Th and 40K activity concentration, whereas the radon emanation was investigated by using a RAD 7 detector. The results show 226Ra, 232Th and 40K activity concentration values ranging from (17 ± 4) to (56 ± 8) Bq kg-1, (14 ± 3) to (77 ± 14) Bq kg-1 and (167 ± 84) to (1760 ± 242) Bq kg-1, respectively. Values of the annual effective dose equivalent outdoor range from 0.035 to 0.152 mSv y-1, whereas the gamma index is in the range of 0.22-0.98. The 222Rn emanation coefficient and the 222Rn surface exhalation rate vary from (0.63 ± 0.3) to (8.27 ± 1.6)% and from (0.12 ± 0.03) to (2.75 ± 0.17) Bq m-2 h-1, respectively. The indoor radon derived from the building use of these rocks induces an approximate contribution to the annual effective dose ranging from 8 to 176 μSv y-1. All the obtained results suggest that the crystalline rocks from the Peloritani Mountains are not harmful for the residential population, even though they induce annual effective doses due to terrestrial gamma radiation above the worldwide average values. Moreover, their use as building materials does not produce significant health hazards connected to the indoor radon exposure.
    Description: Published
    Description: 452–464
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
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  • 3
    Publication Date: 2022-03-07
    Description: The Pollino range is a region of slow deformation where earthquakes generally nucleate on low-angle normal faults. Recent studies have mapped fault structures and identified fluid related dynamics responsible for historical and recent seismicity in the area. Here, we apply the coda-normalization method at multiple frequencies and scales to image the 3-D P-wave attenuation (QP) properties of its slowly deforming fault network. The wide-scale average attenuation properties of the Pollino range are typical for a stable continental block, with a dependence of QP on frequency of Q−1 P = (0.0011   0.0008) f (0.36 0.32). Using only waveforms comprised in the area of seismic swarms, the dependence of attenuation on frequency increases [Q−1 P = (0.0373   0.0011) f (−0.59 0.01)], as expected when targeting seismically active faults. A shallow very-low-attenuation anomaly (max depth of 4–5 km) caps the seismicity recorded within the western cluster 1 of the Pollino seismic sequence (2012, maximum magnitude Mw = 5.1). High-attenuation volumes below this anomaly are likely related to fluid storage and comprise the western and northern portions of cluster 1 and the Mercure basin. These anomalies are constrained to the NW by a sharp low-attenuation interface, corresponding to the transition towards the eastern unit of the Apennine Platform under the Lauria mountains. The low-seismicity volume between cluster 1 and cluster 2 (maximum magnitude Mw = 4.3, east of the primary) shows diffuse low-to-average attenuation features. There is no clear indication of fluid-filled pathways between the two clusters resolvable at our resolution. In this volume, the attenuation values are anyway lower than in recognized low-attenuation blocks, like the Lauria Mountain and Pollino Range. As the volume develops in a region marked at surface by small-scale cross-faulting, it suggests no actual barrier between clusters, more likely a system of small locked fault patches that can break in the future. Our model loses resolution at depth, but it can still resolve a 5-to-15-km-deep high-attenuation anomaly that underlies the Castrovillari basin. This anomaly is an ideal deep source for the SE-to-NW migration of historical seismicity. Our novel deep structural maps support the hypothesis that the Pollino sequence has been caused by a mechanism of deep and lateral fluid-induced migration.
    Description: Natural Environment Research Council (NERC) Centre for Doctoral Training (CDT) in Oil and Gas. University of Aberdeen.
    Description: Published
    Description: 536–547
    Description: 4T. Sismicità dell'Italia
    Description: JCR Journal
    Keywords: body waves ; seismic attenuation ; seismic tomography ; 04.06. Seismology
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  • 4
    Publication Date: 2022-03-07
    Description: Coastal dynamics are the result of several processes controlling the balance between sediment input and output over time. The beach system is not always able to maintain a neutral coastal balance due to natural and anthropogenic causes. We present an integrated marine geology, geomorphological and sea-level rise analysis in the coastal sector between Torre delle Ciavole and Capo Calavà (North-Eastern Sicily, Italy).This sector is characterized by high uplift rates and frequent seismicity (mainly generated by the very active Vulcano-Tindari Fault System), promoting the development of mass-wasting processes in the coastal and offshore sectors. A main erosive feature observed in the area is the head of the Gioiosa Marea submarine canyon, located at some meters of depth, few hundred meters far the coastline. The main morphological features of the canyon were reconstructed through the analysis of high-resolution multibeam data, indicating that the canyon is active, as also testified by the comparison of time-lapse aerial photos. Due to this active setting, the study area is exposed to multiple geohazards, among which we deal with: (1) retrogressive instability at the head of the Gioiosa Marea submarine canyon, (2) coastal erosion favored by the downlope funnelling of littoral drift at the canyon head, (3) flooding scenario at 2100 using the IPCC (Intergovernmental Panel on Climate Change) and Rahmstorf sea-level projections. The consequences associated with these geohazards are amplified by the strong anthropization pressures occurring along in this sector. Our results provide key insights regarding the future scenarios of this coastal sector, revealing the effects of the retrogressive activity associated with the canyon head on the coastal strip. We also present the first management tool for the application of forecasting studies by local administrations.
    Description: Published
    Description: 2
    Description: 3A. Geofisica marina e osservazioni multiparametriche a fondo mare
    Description: JCR Journal
    Keywords: Submarine canyon · Sicily continental margin · Uplift rate · Coastal erosion · Relative sea-level projections · Coastal flooding ; Geohazard assessment
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  • 5
    Publication Date: 2022-04-22
    Description: New geochemical and isotopic data on volcanic rocks spanning the period ~75–50 ka BP on Ischia volcano, Italy, shed light on the evolution of the magmatic system before and after the catastrophic, caldera-forming Monte Epomeo Green Tuff (MEGT) eruption. Volcanic ac tivity during this period was influenced by a large, composite and differentiating magmatic system, replenished several times with isotopically distinct magmas of deepprovenance. Chemical and isotopic variations highlight that the pre-MEGT eruptions were fed by trachytic/phonolitic magmas from an isotopically zoned reservoir that were poorly enriched in radiogenic Sr and became progressively less radiogenic with time. Just prior to the MEGT eruption, the magmatic system was recharged by an isotopically distinct magma, relatively more enriched in radiogenic Sr with respect to the previously erupted magmas. This second magma initially fed several SubPlinian explosive eruptions and later supplied the climactic, phonolitic-to-trachytic MEGT eruption(s). Isotopic data, together with erupted volume estimations obtained for MEGT eruption(s), indicate that 〉5–10 km3of this relatively enriched magma had accumulated in the Ischia plumbing system. Geochemical modelling indicates that it accumulated at shallow depths (4–6 km), over a period of ca. 20 ka. After the MEGT eruption, volcanic activity was fed by a new batch of less differentiated (trachyte-latite) magma that was slightly less enriched in radiogenic Sr. The geochemical and Sr–Nd-isotopic variations through time reflect the upward flux of isotopically distinct magma batches, variably contaminated byHercynian crust at 8–12 km depth. The deep-sourced latitic to trachytic magmas stalled at shallow depths (4–6 km depth), differentiated to phonolite through crystal fractionation and assimilation of a feldspar-rich mush, or ascended directly to the surface and erupted.
    Description: Published
    Description: 1035
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici
    Description: 4V. Processi pre-eruttivi
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Ischia volcano ; Magmatic plumbing system ; Radiogenic isotopes ; Geothermometry ; Feldspar assimilation ; Caldera collapse
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  • 6
    Publication Date: 2022-04-22
    Description: During the past millennia, several eruptions have occurred within the La Fossa caldera on the island of Vulcano (Aeolian Islands, Italy), some being also described in historical documents dating back to Republican Roman times (first to second century BC). The absolute and relative timing of such activity, however, has remained poorly defined and controversial, due to contrasting ages provided by radiometric and unconventional palaeomagnetic methods. Here, we present a detailed recon- struction of the eruptive history focused on the ninth to fifteenth century AD period that occurred at both La Fossa cone and Vulcanello. This integrated approach involves tephrostratigraphy, standard palaeomagnetic methodology and radiocarbon dating. The new dataset confirms that the lavas exposed above sea level at Vulcanello were erupted between the tenth and eleventh century AD, and not between the first and second century BC as previously suggested. In this same time interval, La Fossa cone was characterized by long-lasting, shoshonitic, explosive activity followed by a discrete, sustained, rhyolitic explosive eruption. Between AD 1050 and 1300, activity was focused only on La Fossa cone, with alternating explosive and effusive eruptions that emplaced four rhyolitic and trachytic lava flows, resulting in significant growth of the cone. After the violent, phreatic event of the Breccia di Commenda (thirteenth century), the eruption continued with a substantial, long- lasting emission of fine ash until activity ceased. Magmatic explosive activity resumed at La Fossa cone at the beginning of the fifteenth century marking the onset of the Gran Cratere cycle. This phase lasted until the mid-sixteenth century and produced at least seven explosive eruptions of intermediate magma composition and a couple of lateral explosions (Forgia Vecchia I and II). During this time interval, a third cinder cone was emplaced at Vulcanello, and the activity produced the lava flows of Punta del Roveto and Valle dei Mostri. From the seventeenth to twentieth centuries, volcanic activity was concentrated at La Fossa cone, where it ended in 1890. This work confirms that Vulcanello island formed in Medieval times between the tenth and eleventh centuries. Moreover, between the tenth and mid-sixteenth centuries, La Fossa caldera was the site of at least 19 eruptions with an average eruption rate of one event every 34 years. This rate makes volcanic hazard at Vulcano higher than that suggested to date.
    Description: Published
    Description: 12
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
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  • 7
    Publication Date: 2022-04-21
    Description: This book outlines the current development of geoethical thinking, proposing to the general public reflections and categories useful for understanding the ethical, cultural, and societal dimensions of anthropogenic global changes. Geoethics identifies and orients responsible behaviors and actions in the management of natural processes, redefining the human interaction with the Earth system based on a critical, scientifically grounded, and pragmatic approach. Solid scientific knowledge and a philosophical reference framework are crucial to face the current ecological disruption. The scientific perspective must be structured to help different human contexts while respecting social and cultural diversity. It is impossible to respond to global problems with disconnected local actions, which cannot be proposed as standard and effective operational models. Geoethics tries to overcome this fragmentation, presenting Earth sciences as the foundation of responsible human action toward the planet. Geoethics is conceived as a rational and multidisciplinary language that can bind and concretely support the international community, engaged in resolving global environmental imbalances and complex challenges, which have no national, cultural, or religious boundaries that require shared governance. Geoethics is proposed as a new reading key to rethinking the Earth as a system of complex relationships, in which the human being is an integral part of natural interactions.
    Description: Published
    Description: 1TM. Formazione
    Description: 2TM. Divulgazione Scientifica
    Description: 3TM. Comunicazione
    Keywords: geoethics ; responsibility ; social-ecological systems ; Earth ; environmental ethics ; Anthropocene ; ecological humanism ; global anthropogenic changes ; 05.03. Educational, History of Science, Public Issues ; 05.09. Miscellaneous
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  • 8
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Carroll, E. L., Ott, P. H., McMillan, L. F., Galletti Vernazzani, B., Neveceralova, P., Vermeulen, E., Gaggiotti, O. E., Andriolo, A., Baker, C. S., Bamford, C., Best, P., Cabrera, E., Calderan, S., Chirife, A., Fewster, R. M., Flores, P. A. C., Frasier, T., Freitas, T. R. O., Groch, K., Hulva, P., Kennedy, A., Leaper, R., Leslie, M. S., Moore, M., Oliveira, L., Seger, J., Stepien, E. N., Valenzuela, L. O., Zerbini, A., & Jackson, J. A. Genetic diversity and connectivity of southern right whales (Eubalaena australis) found in the Brazil and Chile-Peru wintering grounds and the South Georgia (Islas Georgias del Sur) feeding ground. Journal of Heredity, 111(3), (2020): 263-276, doi:10.1093/jhered/esaa010.
    Description: As species recover from exploitation, continued assessments of connectivity and population structure are warranted to provide information for conservation and management. This is particularly true in species with high dispersal capacity, such as migratory whales, where patterns of connectivity could change rapidly. Here we build on a previous long-term, large-scale collaboration on southern right whales (Eubalaena australis) to combine new (nnew) and published (npub) mitochondrial (mtDNA) and microsatellite genetic data from all major wintering grounds and, uniquely, the South Georgia (Islas Georgias del Sur: SG) feeding grounds. Specifically, we include data from Argentina (npub mtDNA/microsatellite = 208/46), Brazil (nnew mtDNA/microsatellite = 50/50), South Africa (nnew mtDNA/microsatellite = 66/77, npub mtDNA/microsatellite = 350/47), Chile–Peru (nnew mtDNA/microsatellite = 1/1), the Indo-Pacific (npub mtDNA/microsatellite = 769/126), and SG (npub mtDNA/microsatellite = 8/0, nnew mtDNA/microsatellite = 3/11) to investigate the position of previously unstudied habitats in the migratory network: Brazil, SG, and Chile–Peru. These new genetic data show connectivity between Brazil and Argentina, exemplified by weak genetic differentiation and the movement of 1 genetically identified individual between the South American grounds. The single sample from Chile–Peru had an mtDNA haplotype previously only observed in the Indo-Pacific and had a nuclear genotype that appeared admixed between the Indo-Pacific and South Atlantic, based on genetic clustering and assignment algorithms. The SG samples were clearly South Atlantic and were more similar to the South American than the South African wintering grounds. This study highlights how international collaborations are critical to provide context for emerging or recovering regions, like the SG feeding ground, as well as those that remain critically endangered, such as Chile–Peru.
    Description: This work was supported by the EU BEST 2.0 medium grant 1594 and UK DARWIN PLUS grant 057 and additional funding from the World Wildlife Fund GB107301. The collection of the Chile–Peru sample was supported by the Global Greengrants Fund and the Pacific Whale Foundation. The collection of the Brazilian samples was supported through grants by the Brazilian National Research Council to Paulo H. Ott (CNPq proc. n° 144064/98-7) and Paulo A.C. Flores (CNPq proc. n° 146609/1999-9) and with support from the World Wildlife Fund (WWF-Brazil). The collection of the South African samples was supported by the Global Greengrants Fund, the Pacific Whale Foundation and Charles University Grant Agency (1140217). E.L.C. was partially supported by a Rutherford Discovery Fellowship from the Royal Society of New Zealand. This study forms part of the Ecosystems component of the British Antarctic Survey Polar Sciences for Planet Earth Programme, funded by the Natural Environment Research Council.
    Keywords: population structure ; connectivity ; migration ; gene flow
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ferrer-González, F. X., Widner, B., Holderman, N. R., Glushka, J., Edison, A. S., Kujawinski, E. B., & Moran, M. A. Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy. ISME Journal, (2020), doi:10.1038/s41396-020-00811-y.
    Description: The communities of bacteria that assemble around marine microphytoplankton are predictably dominated by Rhodobacterales, Flavobacteriales, and families within the Gammaproteobacteria. Yet whether this consistent ecological pattern reflects the result of resource-based niche partitioning or resource competition requires better knowledge of the metabolites linking microbial autotrophs and heterotrophs in the surface ocean. We characterized molecules targeted for uptake by three heterotrophic bacteria individually co-cultured with a marine diatom using two strategies that vetted the exometabolite pool for biological relevance by means of bacterial activity assays: expression of diagnostic genes and net drawdown of exometabolites, the latter detected with mass spectrometry and nuclear magnetic resonance using novel sample preparation approaches. Of the more than 36 organic molecules with evidence of bacterial uptake, 53% contained nitrogen (including nucleosides and amino acids), 11% were organic sulfur compounds (including dihydroxypropanesulfonate and dimethysulfoniopropionate), and 28% were components of polysaccharides (including chrysolaminarin, chitin, and alginate). Overlap in phytoplankton-derived metabolite use by bacteria in the absence of competition was low, and only guanosine, proline, and N-acetyl-d-glucosamine were predicted to be used by all three. Exometabolite uptake pattern points to a key role for ecological resource partitioning in the assembly marine bacterial communities transforming recent photosynthate.
    Description: This work was supported by grants from the Gordon and Betty Moore Foundation (5503) and the National Science Foundation (IOS-1656311) to MAM, ASE, and EBK, and by the Simons Foundation grant 542391 to MAM within the Principles of Microbial Ecosystems (PriME) Collaborative.
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  • 10
    Publication Date: 2022-05-04
    Description: The availability of computer tools able to describe the behavior of pyroclastic density currents (PDCs) with uncertainty quantification is of primary importance for the assessment of volcanic hazard. A common strategy to assess the intrinsic variability of these phenomena is based on the analysis of large sets of numerical simulations with variable input parameters. The use of models fast enough to allow for a large number of simulations, such as the so-called kinetic energy models, is thus advantageous. Due to the sensitivity of kinetic energy models to poorly constrained input parameters, the definition of their variation ranges is a critical step in the construction of hazard maps and a numerical calibration becomes necessary. We present a set of reproducible and structured calibration procedures of numerical models based either on a reference deposit or on the distribution of runout distance or inundation area of documented PDCs. In the first case, various metrics can be adopted to compare the model results with the reference PDC deposit (root mean square distance, Hausdorff distance, and Jaccard index), facilitating the development of scenario-based hazard assessments. Calibrations based on the distribution of runout distance or inundation area allow the construction of probabilistic hazard maps that are not conditioned on the occurrence of a specific scenario, but rather reflect the variability of the documented PDCs during the time window considered. Importantly, our calibration strategies allow one to set the input parameters considering their potential statistical dependence. These procedures have been implemented on the user-friendly versions of two kinetic energy models: ECMapProb 2.0 and BoxMapProb 2.0, whose functionalities are presented for the first time in this paper. The different calibration strategies and the functionalities of the two programs are illustrated by considering three case studies: El Misti (Peru), Merapi (Indonesia), and Campi Flegrei (Italy).
    Description: Published
    Description: 29
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: JCR Journal
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  • 11
    Publication Date: 2022-03-16
    Description: Of all the socio-economic changes caused by the Covid-19 pandemic, the disruption to workforce organizations will probably leave the largest indelible mark. The way work will be organized in the future will be closely linked to the experience of work-ing under the same institution’s response to the pandemic. This paper aims to fill the gap in knowledge about smart working (SW) in public organizations, with a focus on the experience of the employees of two Italian research organizations, CNR and INGV. Analysing primary data, it explored and assessed how SW had been experi-enced following the implementation of governmental measures aimed at limiting the spread of COVID-19
    Description: Published
    Description: 815–833
    Description: 2TM. Divulgazione Scientifica
    Description: JCR Journal
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  • 12
    Publication Date: 2022-03-16
    Description: In this work, we assess ground shaking in the wider Zagreb area by computing simulated seismograms at regional distances. For the purposes of the simulations, we assemble the 3D velocity and density model and test its performance. First, we compare the low-frequency simulations obtained using deterministic method for both new 3D model and a simple 1D model. We then continue the performance test by computing the full broadband seismo- grams. To do that, we apply the hybrid technique in which the low frequency (f〈1 Hz) and high frequency (f=1–10 Hz) seismograms are obtained separately using deterministic and stochastic method, respectively, and then reconciled into a single time series. We apply this method to the MW=5.3 event and four smaller (3.0〈MW〈5.0) events that occurred in the studied region. We compare simulated data with the recorded seismograms and vali- date our results by calculating the goodness of fit score for peak ground velocity and shak- ing duration. Next, to improve the understanding of the strong ground motion in this area, we simulate seismic shaking scenarios for the 1880, MW = 6.2 earthquake. From computed low-frequency waveforms, we generate shakemaps and compare the ground-motion fea- tures of the two possible sources of this event, Kašina fault and North Medvednica fault. We conduct a preliminary study to determine which fault is a more probable source of the 1880 historic event by comparing the peak ground velocities and Arias intensity with the observed intensities.
    Description: Croatian Science Foundation under the Project No. IP-2020-02-3960 European Commission, H2020 Excel- lence Science [ChEESE (Grant No. 823844)]
    Description: Published
    Description: 167–192
    Description: 1T. Struttura della Terra
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: JCR Journal
    Keywords: Numerical simulation ; 3D ground motion ; Earthquake ; Central Croatia ; Zagreb ; Seismic wave propagation ; 3D crustal model ; 04.06. Seismology
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  • 13
    Publication Date: 2022-03-16
    Description: Geomorphological investigations in Rome’s river valley are revealing the dynamism of the prehistoric landscape. It is becoming increasingly apparent that paleogeographic conditions that defined Rome in the historical era are the product of changes since the Bronze Age, which may be the result of local fault activity in addition to fluvial dynamism. Through a dedicated borehole chronostratigraphic study, integrated by 14C and archaeological dates, and paleomagnetic investigations, we offer here new evidence for fault displacement since ca. 4500 years/BP. We present the failure of the sedimentary fabric of a clay horizon caused by liquefaction processes commonly linked with seismic shaking, interpreting an (ca. 4 m) offset to signify the existence of a fault line located at the foot of the Capitoline Hill. In addition, we show evidence for another (ca. 1 m) offset affecting a stratigraphic horizon in the river channel, occurring along another hypothesized fault line crossing through the Tiber Valley. Movement along this fault may have contributed to a documented phase of fast overflooding dated to the sixth century BCE which eventually led to the birth of the Tiber Island. The most plausible scenario implies progressive deformation, with an average tectonic rate of 2 mm/year, along these inferred fault lines. This process was likely punctuated with moderate earthquakes, but no large event necessarily occurred. Together, the available evidence suggests that during the early centuries of sedentary habitation at the site of Rome, active fault lines contributed to significant changes to the Tiber River valley, capable of challenging lowland activities.
    Description: Published
    Description: 359–378
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
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  • 14
    Publication Date: 2022-03-16
    Description: Data visualization, and to a lesser extent data sonification, are classic tools to the scientific community. However, these two approaches are very rarely combined, although they are highly complementary: our visual system is good at recognizing spatial patterns, whereas our auditory system is better tuned for temporal patterns. In this article, data representation methods are proposed that combine visualization, sonification, and spatial audio techniques, in order to optimize the user’s perception of spatial and temporal patterns in a single display, to increase the feeling of immersion, and to take advantage of multimodal integration mechanisms. Three seismic data sets are used to illustrate the methods, covering different physical phenomena, time scales, spatial distributions, and spatio-temporal dynamics. The methods are adapted to the specificities of each data set, and to the amount of information that the designer wants to display. This leads to further developments, namely the use of audification with two time scales, the switch from pure audification to time-modulated noise, and the switch from pure audification to sonic icons. First user feedback from live demonstrations indicates that the methods presented in this article seem to enhance the perception of spatio-temporal patterns, which is a key parameter to the understanding of seismically active systems, and a step towards apprehending the processes that drive this activity.
    Description: Published
    Description: 125–142
    Description: 7T. Variazioni delle caratteristiche crostali e "precursori"
    Description: JCR Journal
    Keywords: 04.06. Seismology
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  • 15
    Publication Date: 2022-03-16
    Description: In November 2019, the fourth meeting on Volcano Observatory Best Practices workshop was held in Mexico City as a series of talks, discussions, and panels. Volcanologists from around the world offered suggestions for ways to optimize volcano-observatory crisis operations. By crisis, we mean unrest that may or may not lead to eruption, the eruption itself, or its aftermath, all of which require analysis and communications by the observatory. During a crisis, the priority of the observatory should be to acquire, process, analyze, and interpret data in a timely manner. A primary goal is to communicate effectively with the authorities in charge of civil protection. Crisis operations should rely upon exhaustive planning in the years prior to any actual unrest or eruptions. Ideally, nearly everything that observatories do during a crisis should be envisioned, prepared, and practiced prior to the actual event. Pre-existing agreements and exercises with academic and government collaborators will minimize confusion about roles and responsibilities. In the situation where planning is unfinished, observatories should prioritize close ties and communications with the land and civil-defense authorities near the most threatening volcanoes.
    Description: Published
    Description: 3
    Description: 6SR VULCANI – Servizi e ricerca per la società
    Description: N/A or not JCR
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  • 16
    Publication Date: 2022-03-16
    Description: The increased concentration of greenhouse gases in the atmosphere from human activities traps heat within the climate system and increases ocean heat content (OHC). Here, we provide the first analysis of recent OHC changes through 2021 from two international groups. The world ocean, in 2021, was the hottest ever recorded by humans, and the 2021 annual OHC value is even higher than last year’s record value by 14 ± 11 ZJ (1 zetta J = 1021 J) using the IAP/CAS dataset and by 16 ± 10 ZJ using NCEI/NOAA dataset. The long-term ocean warming is larger in the Atlantic and Southern Oceans than in other regions and is mainly attributed, via climate model simulations, to an increase in anthropogenic greenhouse gas concentrations. The year-to-year variation of OHC is primarily tied to the El Niño-Southern Oscillation (ENSO). In the seven maritime domains of the Indian, Tropical Atlantic, North Atlantic, Northwest Pacific, North Pacific, Southern oceans, and the Mediterranean Sea, robust warming is observed but with distinct inter-annual to decadal variability. Four out of seven domains showed record-high heat content in 2021. The anomalous global and regional ocean warming established in this study should be incorporated into climate risk assessments, adaptation, and mitigation.
    Description: Published
    Description: 373–385
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: ocean warming
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 17
    Publication Date: 2022-03-16
    Description: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2021. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Description: In a recent study (Jozinovi\'c et al, 2020) we showed that convolutional neural networks (CNNs) applied to network seismic traces can be used for rapid prediction of earthquake peak ground motion intensity measures (IMs) at distant stations using only recordings from stations near the epicenter. The predictions are made without any previous knowledge concerning the earthquake location and magnitude. This approach differs from the standard procedure adopted by earthquake early warning systems (EEWSs) that rely on location and magnitude information. In the previous study, we used 10 s, raw, multistation waveforms for the 2016 earthquake sequence in central Italy for 915 events (CI dataset). The CI dataset has a large number of spatially concentrated earthquakes and a dense station network. In this work, we applied the CNN model to an area around the VIRGO gravitational waves observatory sited near Pisa, Italy. In our initial application of the technique, we used a dataset consisting of 266 earthquakes recorded by 39 stations. We found that the CNN model trained using this smaller dataset performed worse compared to the results presented in the original study by Jozinovi\'c et al. (2020). To counter the lack of data, we adopted transfer learning (TL) using two approaches: first, by using a pre-trained model built on the CI dataset and, next, by using a pre-trained model built on a different (seismological) problem that has a larger dataset available for training. We show that the use of TL improves the results in terms of outliers, bias, and variability of the residuals between predicted and true IMs values. We also demonstrate that adding knowledge of station positions as an additional layer in the neural network improves the results. The possible use for EEW is demonstrated by the times for the warnings that would be received at the station PII.
    Description: RISE (Union's Horizon 2020 research and innovation programme, grant agreement No.821115)
    Description: Published
    Description: 704–718
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Keywords: Physics - Geophysics; Physics - Geophysics ; machine learning ; ground motion prediction ; seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 18
    Publication Date: 2022-03-17
    Description: Physics of earthquake source can be investigated by monitoring active faults from borehole observatory in reservoirs (Maxwell et al. 2010) or by interpretation of seismic waves at the earth’s surface (Shearer 2019). Indeed, most information on earthquake mechanics is retrieved from seismology (e.g., Lee et al. 2002). However, the low resolution of these indirect techniques (cm to km scale) yields limited information on the physical and chemical deformation mechanisms active during earthquake rupture nucleation and propagation (Kanamori and Anderson 1975). Experimental studies of frictional instabilities on fault gouge material or pre-existing surfaces (e.g., Brace and Byerlee 1966) may overcome those limitations (Scholz 1998; Marone 1998; Persson 2013). For instance, friction controls earthquake nucleation and propagation, the static and dynamic stress drops, the frictional heat generated during slip, and consequently the energy budget of earthquakes (Scholz 2019; Di Toro et al. 2011). All these processes can be investigated and monitored through laboratory experiments. In the last decades, rock friction properties have long been investigated using triaxial apparatuses in saw-cut configuration (e.g., Jaeger 1959; Byerlee 1967; Handin 1969), in which the fault is loaded at low velocities, typically orders of µm/s, and accumulates small displacements, typically few mm. In a seminal paper, Brace and Byerlee (1966) suggested that the stick–slip phenomenon observed in these rock friction experiments is analogous to natural earthquakes. Furthermore, to address the problem of earthquakes nucleation, biaxial apparatuses were developed and have long been used to study frictional properties of experimental faults under sub-seismic slip velocities in double-direct shear configuration (e.g., Dieterich 1972; Mair et al. 2002; Collettini et al. 2014; Giorgetti et al. 2015). The biaxial apparatus developed at USGS (USA) is amongst the first biaxial apparatuses used to investigate rock frictional properties (e.g., Dieterich 1972). Other pioneering biaxial apparatuses are the one in the Rock and Sediment Mechanics Laboratory at the Pennsylvania State University (USA) (e.g., Mair et al. 2002) and BRAVA (Brittle Rock deformAtion Versatile Apparatus) installed at INGV in Rome (Italy) (Collettini et al. 2014). Although the biaxial apparatuses developed in the past 50 years are characterized by different boundary conditions in terms of forces, pressures, temperatures and size of the samples, all of them take advantages from the double-direct shear configuration that allows good control of the normal and shear forces acting of the fault, accurate measurements of fault slip and dilation/compaction, and constant contact area. Friction studies conducted with triaxial and biaxial deformation apparatuses are characterized by sub-seismic slip velocities and a limited amount of slip, 〈 10–3 m/s and few cm, respectively (e.g., Jaeger 1959; Byerlee 1967,1978; Brace and Byerlee 1966; Handin 1969; Paterson and Wong 2005; Lockner and Beeler 2002; Mair et al. 2002; Savage and Marone 2007; Samuelson et al. 2009; Carpenter et al. 2016). These experiments showed that the apparent static friction coefficient μ (i.e., μ = τ/σneff, where τ is the shear stress and σneff the effective normal stress acting on the fault) is between 0.60 and 0.85 for most rocks (Byerlee’s rule; except for phyllosilicates-rich rocks [Byerlee 1978]), for normal stresses up to 2 GPa, and temperatures up to 780 K. The apparent friction can thus be expressed as a function of slip velocity and a state variable, and modelled with the empirical rate- and state-dependent friction law (Dieterich 1979; Ruina 1983). Additionally, at velocities typical of earthquake nucleation phase, the apparent friction varies only a few percents for small changes in slip velocity, determining if a fault is or not prone to nucleate earthquakes. Although Byerlee’s rule and the rate-and-state law have many applications in earthquake mechanics (inter-seismic and nucleation phase of earthquakes), these experiments were performed at slip velocities and displacements orders of magnitude smaller than those of earthquakes. Therefore, these experiments are unable to characterize the propagation phase of earthquakes. In the last 15 years, the multiplication of the rotary shear apparatus, designed to achieve slip velocities higher than 1 m/s and infinite displacement, overcome those limitations and produced unexpected results (Di Toro et al. 2010). A pioneering rotary shear apparatus capable of achieving seismic slip velocities up to 1.3 m/s were built and installed in Japan (Shimamoto 1994). Amongst others (see Di Toro et al. 2010 and references therein), a state-of-art rotary shear apparatus (SHIVA, Slow to High-Velocity Shear Apparatus) capable of deforming samples at slip rates up to 9 m/s has been installed at INGV in Rome (Italy) (Di Toro et al. 2010). Studies performed with these rotary shear apparatuses have shown a significant decrease in fault strength with increasing slip and slip velocity. They also reveal various dynamic fault‐weakening mechanisms (frictional melting, thermal pressurization, silica gel, elastohydrodynamic lubrication) that are likely active during earthquakes, including mechanisms that were unknown before conducting these experiments. Though this new frontier is promising, key aspects of earthquake mechanics laboratory investigation, like being able to conduct high slip velocity experiments on rocks under elevated pore fluid pressure and temperatures characteristic of natural and induced earthquakes, remain beyond current experimental capabilities. Furthermore, studying links between pore‐fluid pressure, permeability, and frictional properties remains a challenge. To date, very few high-velocity friction experiments have been performed in presence of pore fluid pressure (Tanikawa 2012a, b, 2014; Violay et al. 2014, 2015, 2019; Cornelio et al. 2019a, b). In this paper, we present a new state-of-art apparatus combining the advantages of biaxial apparatuses, i.e., simple geometry, high normal forces, confining pressure and pore fluid pressure, and the advantages of the rotary shear apparatuses, i.e. high slip velocity implemented thanks to the presence of electromagnetic motors. Building on the design of recent low-velocity biaxial machines implemented with pressure vessels (Samuelson et al. 2009; Collettini et al. 2014) and implementing the system with powerful linear motors (Di Toro et al. 2010), the new HighSTEPS (High Strain TEmperature Pressure Speed) apparatus is able to reproduce the deformation conditions typical of the seismogenic crust, i.e., confining pressure up to 100 MPa, slip velocity from 10–5 to 0.25 m/s, temperature up to 120 °C, pore pressure up to 100 MPa. Under these unique boundary conditions, the new apparatus allows the investigation of the entire seismic cycle (inter-seismic, nucleation and propagation).
    Description: Published
    Description: 2039–2052
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
    Keywords: Biaxial friction apparatus ; Low to high slip velocity ; Deformation conditions of the seismogenic upper crust
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 19
    Publication Date: 2022-03-29
    Description: Endemic Antarctic macroalgae are especially adapted to live in extreme Antarctic conditions. Their potential biogeographic distribution niche is primarily controlled by the photoperiodic regime and seawater temperatures, since these parameters regulate growth, reproduction, and survival during the entire life cycle. Here we analyzed the upper survival temperature (UST) of juvenile sporophytes and the temperature range for sporophyte formation from gametophytes of Desmarestia menziesii, one of the dominant endemic Antarctic brown algal species. This process is a missing link to better evaluate the full biogeographical niche of this species. Two laboratory experiments were conducted. First, growth and maximum quantum yield of juvenile sporophytes were analyzed under a temperature gradient (0, 5, 10, 12, 13, 14, 15, and 16 °C) in a 16:8 h light:dark (LD) regime (Antarctic spring condition) for 2 weeks. Second, the formation of sporophytes from gametophytes (as a proxy of gametophyte reproduction) was evaluated during a 7 weeks period under a temperature gradient (0, 4, 8, 12, and 16 °C), and two different photoperiods: 6:18 h LD regime simulating winter conditions and a light regime simulating the Antarctic shift from winter to spring by gradually increasing the light period from 7.5:16.5 h LD (late winter) to 18.5:5.5 h LD (late spring). Sporophytes of D. menziesii were able to grow and survive up to 14 °C for 2 weeks without visible signs of morphological damage. Thus, this species shows the highest UST of all endemic Antarctic Desmarestiales species. In turn, gametophyte reproduction solely took place at 0 °C but not at 4–8 °C. The number of emerging sporophytes was six times higher under the light regime simulating the transition from winter to spring than under constant short day winter conditions. There was a negative relationship between the number of sporophytes formed and the gametophyte density at the beginning of the experiment, which provides evidence that gametophyte density exerts some control upon reproduction in D. menziesii. Results strongly indicate that although sporophytes and gametophytes may survive in warmer temperatures, the northernmost distribution limit of D. menziesii in South Georgia Islands is set by the low temperature requirements for gametophyte reproduction. Hence, global warming could have an impact on the distribution of this and other Antarctic species, by influencing their growth and reproduction.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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  • 20
    Publication Date: 2022-03-21
    Description: On 30 October 2020 a MW 7.0 earthquake occurred in the eastern Aegean Sea, between the Greek island of Samos and Turkey’s Aegean coast, causing considerable seismic damage and deaths, especially in the Turkish city of Izmir, approximately 70 km from the epicenter. In this study, we provide a detailed description of the Samos earthquake, starting from the fault rupture to the ground motion characteristics. We first use Interferometric Synthetic Aperture Radar (InSAR) and Global Positioning System (GPS) data to constrain the source mechanisms. Then, we utilize this information to analyze the ground motion characteristics of the mainshock in terms of peak ground acceleration (PGA), peak ground velocity (PGV), and spectral pseudo-accelerations. Modelling of geodetic data shows that the Samos earthquake ruptured a NNE-dipping normal fault located offshore north of Samos, with up to 2.5-3 m of slip and an estimated geodetic moment of 3.3 ⨯ 1019 Nm (MW 7.0). Although low PGA were induced by the earthquake, the ground shaking was strongly amplified in Izmir throughout the alluvial sediments. Structural damage observed in Izmir reveals the potential of seismic risk due to the local site effects. To better understand the earthquake characteristics, we generated and compared stochastic strong ground motions with the observed ground motion parameters as well as the ground motion prediction equations (GMPEs), exploring also the efficacy of the region-specific parameters which may be used to better predict the expected ground shaking from future large earthquakes in the region.
    Description: Published
    Description: 4745–4771
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 21
    Publication Date: 2022-03-21
    Description: The China Seismo-Electromagnetic Satellite (CSES), China’s first satellite to measure geophysical fields with scientific goals in both space and solid earth physics, was launched successfully in February 2018. It carries high-precision magnetometers to measure the geomagnetic field. In this study, the CSES magnetic data were used to extract the signal of the lithospheric magnetic field caused by magnetized rocks in the crust and uppermost mantle. First, an along-track analysis of the CSES magnetic data was undertaken near the Bangui magnetic anomaly in central Africa and the Tarim magnetic anomaly in China, demonstrating that the CSES magnetic data are indeed sensitive to the lithospheric magnetic anomaly field. Then a lithospheric magnetic anomaly map over China and surrounding regions was derived. This map is consistent with the lithospheric part of the CHAOS-7 model. In particular, it clearly reveals four major magnetic anomalies containing long-wavelength signals at the altitude of Low-Earth-Orbiting satellites. Three magnetic highs are located over the Tarim, Sichuan and Songliao basin, the origins of which could be related to large-scale tectonic-magmatic activities during geological history. A prominent magnetic low is otherwise found in the southern Himalayan-Tibetan plateau, possibly caused by the shallow Curie depth in this region. To further improve the precision of the lithospheric magnetic field model, more detailed data processing and multi-source data merging are needed.
    Description: Published
    Description: 1118–1126
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 22
    Publication Date: 2022-03-01
    Description: Porous carbons are materials of wide application and their request is more and more increasing in the last years: Properly designed synthesis is presently available for the preparation of materials to be used in several fields (e.g.: adsorption, molecular separation, and catalysis). The characterization of the porous carbons is usually carried out using different techniques such as thermogravimetric analyses, Raman spectroscopy, Scanning electron microscopy, etc. In this work, the micro-Raman technique is adopted in combination with N2 physisorption at 77 K to monitor how the synthetic approach influences the presence of either amorphous or ordered regions in porous carbons. The typical D and G Raman bands of activated carbons have been carefully deconvoluted in six different components by a fitting procedure, and the determined R1 = ID1/IG ratio correlated to their specific surface area.
    Description: Published
    Description: 419–431
    Description: 1TR. Georisorse
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 23
    Publication Date: 2021-11-09
    Description: The aim of this study is to improve our knowledge of the attenuation structure in the Southern Apennines using a new amplitude ratio tomography method (Phillips et al., Geophys Res Lett 32(21): L21301, 2005) applied on both direct and coda envelope measurements derived from 150 events recorded by 47 stations of the Istituto Nazionale di Geofisica e Vulcanologia National Seismic Network (Rete Sismica Nazionale Centralizzata). The twodimensional (2-D) analysis allows us to take into account lateral crustal variations and heterogeneities of this region. Using the same event and station distribution, we also applied a simple 1-D methodology, and the performance of the 1-D and 2-D path assumptions is tested by comparing the average interstation variance for the path-corrected amplitudes using coda and direct waves. In general, coda measurement results are more stable than using direct waves when the same methodology is applied. Using the 2-D approach, we observe more stable results for both waves. However, the improvement is quite small, probably because the crustal heterogeneity is weak. This means that, for this region, the 1-D path assumption is a good approximation of the attenuation characteristics of the region. A comparison between Q tomography images obtained using direct and coda amplitudes shows similar results, consistent with the geology of the region. In fact, we observe low Q along the Apennine chain toward the Tyrrhenian Sea and higher values to the east, in correspondence with the Gargano zone that is related to the Apulia Carbonate Platform. Finally, we compared our results with the coda Q values proposed by Bianco et al. (Geophys J Int 150:10–22, 2002) for the same region. The good agreement validates our results as the authors used a completely independent methodology.
    Description: Published
    Description: 355–365
    Description: 1T. Struttura della Terra
    Description: JCR Journal
    Keywords: coda Q tomography
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 24
    Publication Date: 2022-02-18
    Description: The petrological study of volcanic products emitted during the paroxysmal events of December 2015 from the summit craters of Mount Etna allow us to constrain T-P-XH2O phase stability, crystallization conditions, and mixing processes along the main open-conduit feeding system. In this study, we discuss new geochemical, thermo-barometric data and related Rhyolite- MELTS modelling of the eruptive activity that involved the concomitant activation of all summit craters. The results, in comparison with the previous paroxysmal events of the 2011–2012, reinforce the model of a vertically extended feeding system and highlight that the activity at the New South-East Crater was fed by magma residing at a significantly shallower depth with respect to the Central Craters (CC) and North-East Crater (NEC), even if all conduits were fed by a common deep (P = 530–440 MPa) basic magmatic input. Plagioclase dissolution, resorption textures, and the Rhyolite-MELTS stability model corroborate its dependence on H2O content; thus, suggesting that further studies on the effect that flushing from fluids with different H2O/ CO2 ratio are needed to understand the eruption-triggering mechanisms for high energetic strombolian paroxysmal episodes.
    Description: Published
    Description: 88
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
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  • 25
    Publication Date: 2022-02-16
    Description: Validation and benchmarking of pyroclastic current (PC) models is required to evaluate their performance and their reliability for hazard assessment. Here, we present results of a benchmarking initiative built to evaluate four models commonly used to assess concentrated PC hazard: SHALTOP, TITAN2D, VolcFlow, and IMEX_SfloW2D. The benchmark focuses on the simulation of channelized flows with similar source conditions over five different synthetic channel geometries: (1) a flat incline plane, (2) a channel with a sharp 45° bend, (3) a straight channel with a break-in-slope, (4) a straight channel with an obstacle, and (5) a straight channel with a constriction. Several outputs from 60 simulations using three different initial volume fluxes were investigated to evaluate the performance of the four models when simulating valley-confined PC kinematics, including overflows induced by topographic changes. Quantification of the differences obtained between model outputs at t = 100 s allowed us to identify (1) issues with the Voellmy-Salm implementation of TITAN2D and (2) small discrepancies between the three other codes that are either due to various curvature and velocity formulations and/or numerical frameworks. Benchmark results were also in agreement with field observations of natural PCs: a sudden change in channel geometries combined with a high-volume flux is key to generate overflows. The synthetic benchmarks proved to be useful for evaluating model performance, needed for PC hazard assessment. The overarching goal is to provide an interpretation framework for volcanic mass flow hazard assessment studies to the geoscience community.
    Description: Published
    Description: 75
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Keywords: benchmarking ; pyroclastic current ; numerical modeling ; 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 26
    Publication Date: 2022-02-21
    Description: The stability of the West Antarctic Ice Sheet is threatened by the incursion of warm Circumpolar Deepwater which flows southwards via cross-shelf troughs towards the coast there melting ice shelves. However, the onset of this oceanic forcing on the development and evolution of the West Antarctic Ice Sheet remains poorly understood. Here, we use single- and multichannel seismic reflection profiles to investigate the architecture of a sediment body on the shelf of the Amundsen Sea Embayment. We estimate the formation age of this sediment body to be around the Eocene-Oligocene Transition and find that it possesses the geometry and depositional pattern of a plastered sediment drift. We suggest this indicates a southward inflow of deep water which probably supplied heat and, thus, prevented West Antarctic Ice Sheet advance beyond the coast at this time. We conclude that the West Antarctic Ice Sheet has likely experienced a strong oceanic influence on its dynamics since its initial formation.
    Repository Name: EPIC Alfred Wegener Institut
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  • 27
    Publication Date: 2022-02-21
    Description: Deciphering magma evolution below ocean basaltic volcanoes is all the more challenging because magma mixing is a common process tending to modify the pristine geochemical diversity during magma ascent. On the western flank of the Piton de la Fournaise volcano, transitional basalts have compositions that testify to origins down to the upper mantle and display a widespread geochemical diversity ranging from a tholeiitic affinity to an alkaline one. There, we show that evolved melt inclusions and matrix glasses (MgO 〈 9 wt%) record an alkali enrichment coupled with a Ca/Al ratio decrease, which tracks the effect of clinopyroxene crystallization at the depth of the mantle-crust underplating layer. At this depth and shallower, reverse zoning of olivine crystals, clinopyroxene dissolution, and hybrid melt compositions testify to extensive mixing processes leading to a homogenization of the pristine geochemical footprint of melts upon ascent. Enrichment in incompatible trace elements in some evolved melt inclusions suggests that magma ponding at the depth of the mantle-crust underplating layer favours also assimilation of melts originating from low degrees of partial melting of cumulates (wehrlites, dunites). Conversely, the most primitive melt inclusions documented so far at La Réunion Island (MgO up to 11.2 wt%) better preserve a pristine geochemical variability related to partial melting of a slightly heterogeneous mantle source. We suggest that these slightly distinct source components may mirror the compositions of recent melts from the two closely located Piton de la Fournaise and Piton des Neiges volcanoes.
    Description: Published
    Description: 84
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 28
    Publication Date: 2022-02-24
    Description: We used 1029 earthquakes, with magnitudes ranging from M 3.0 to M 6.5, located in central Apennines, Italy, and recorded by 414 local stations to study the variation of the quality factor QS of shear waves with depth. We first determined average nonparametric attenuation functions in the frequency band from 0.5 to 20 Hz and hypocenter distances less than 155 km to correct the observed acceleration spectra for attenuation effects. Then, we separated source and site effects from the corrected spectral records to determine the changes of QS with depth. We used a 1D local shear-wave velocity model to calculate the travel times of the source-station paths, and we inverted the observed spectra to determine QS in three different depth intervals (0–4 km, 4–10 km and 10–15 km) and five frequencies (0.5, 1, 4, 10 and 20 Hz). We found that QS increases with frequency at all depths considered and tends to have lower values at shallow depths. The average value of QS is consistent with previous studies made in central Italy and can be approximated by QS = 43f0.94. To describe the frequency dependence of QS with depth (H), we determine the following relations: QS = 5.5f1.39, 0.5 ≤ f ≤ 10 Hz and QS = 151.5, f 〉 10 Hz for 0–4 km, QS = 52f0.87 for 4 〈 H 〈 10 km and QS = 51f0.92 for 10 ≤ H ≤ 15 km. We conclude that the Q-depth-dependent model can be useful to improve estimates of source parameters and ground motion prediction in the central Apennines region of Italy.
    Description: Published
    Description: 2059–2075
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Keywords: Solid earth
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 29
    Publication Date: 2022-02-24
    Description: Correction to: Natural Hazards https://doi.org/10.1007/s11069-021-04675-z
    Description: Correction to: Natural Hazards https://doi.org/10.1007/s11069-021-04675-z
    Description: Published
    Description: 203
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 30
    Publication Date: 2022-02-25
    Description: Physics-based broadband ground-motion simulations are generated for the strong mainshocks that occurred in the region of the Central Ionian Islands, on 26th January 2014 in Kefalonia (Mw6.1) and 17th November 2015 in Lefkas (Mw6.5). The study area is associated with frequent strong earthquakes both in the historical and instrumental eras. During the last decades, the network of strong-motion accelerographs in the area has been densified, and thus provided an adequate number of strong ground-motion records as a means to better examine the related ground-motion characteristics. In the present study, broadband ground motions for the two case studies are simulated both at selected sites and at a dense grid of points covering the affected areas. The low-frequency part of the synthetics is computed using a discrete wavenumber finite element method by convolving Green’s functions with a kinematic slip model in the frequency domain. A stochastic finite fault model approach based on a dynamic corner frequency is considered to calculate the ground motions for the higher frequencies. The broadband synthetic time series are generated after merging the results obtained from the two separate techniques, by performing a weighted summation at intermediate frequencies. The simulated values are validated by comparison with both recorded Peak Ground Acceleration (PGA) and PeakGround Velocity (PGV) values and the estimated ones by using widely accepted Ground Motion Prediction Equations (GMPEs). Our results indicate that both the spatial distribution and the amplification pattern of the simulated ground motions, in the near-field, in terms of PGA and PGV are highly influenced by the slip heterogeneity and the maximum slip patches within the seismic source.
    Description: Published
    Description: 3505–3527
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: JCR Journal
    Keywords: seismic hazard ; Strong ground motion ; near-source ground motion ; Ionian Islands ; stochastic finite-fault method ; 04.06. Seismology
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  • 31
    Publication Date: 2022-02-25
    Description: Stromboli is an active, open conduit mafic volcano, whose persistent mild Strombolian activity is occasionally punctuated by much stronger explosions, known as paroxysms. During summer 2019, the volcano unexpectedly produced one such paroxysm on July 3, followed by intense explosive and intermittent effusive activity culminating in a second paroxysm on August 28. Visual observations and the analysis of the fall deposits associated with the two paroxysms allowed us to reconstruct ballistic exit velocities of up to 160 m s−1. Plume heights of ~ 8.4 km and 6.4 km estimated for the two events correspond to mass eruption rates of 1.1 x 10 6 kg s−1 and 3.6 x 105 kg s−1, respectively. This is certainly an underestimate as directional pyroclastic flows into which mass was partitioned immediately formed, triggering small tsunamis at the sea entrance. The mass of ballistic spatters and blocks erupted during the July 3 event formed a continuous cover at the summit of the volcano, with a mass calculated at ~ 1.4 x 10 8 kg. The distribution of fall deposits of both the July 3 and August 28 events suggests that pyroclasts characterized by terminal fall velocities 〈 10–20 m s−1 remained fully suspended within the convective region of the plume and did not fall at distances closer than ca 1700 m to the vent. Based on the impulsive, blast-like phenomenology of paroxysms as well as the deposit distribution and type, paroxysms are classified as basaltic Vulcanian in style. The evolution of the summer 2019 eruptive events was not properly captured within the framework of the alert level system which is focused on tsunamigenic processes, and this is discussed so as to provide elements for the implementation of the reference scenarios and an upgrade of the system to take into account such events. In particular we find that, although still largely unpredictable, at least at operational time scales, and not necessarily tsunamigenic, Vulcanian eruptions and the subsequent evolution of the eruptive phenomena should be considered for the alert level system. This serves as a warning to the implementation of alert systems where the unexpected needs to be taken into account, even at systems that are believed to be relatively “predictable” as is the case at many persistently active, open vent mafic systems.
    Description: Published
    Description: 1
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Keywords: Vulcanian eruptions ; Paroxysm ; Strombolian eruptions ; Ballistic ejecta ; Eruption plume ; Volcanic hazard
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 32
    Publication Date: 2022-02-25
    Description: This paper reports on experiments devoted to explore the role of specific attributes of humanoid virtual agents that may influence elderly users’ perception and attitude, determining their acceptance and adoption as assistive devices. In particular, it investigates elderly preference on agents’ gender and the role of the agents’ ability to use voice during the interaction. To this aim two different groups of seniors were involved in the experiments. The first group evaluated talking virtual agents, the second one the same virtual agents, but silenced. The data shows that elderly users, independently from their gender, prefer to interact with female agents, especially when they are able to talk to them, revealing the role played by the voice. Furthermore, it was found a significant effect of the elderly level of experience with technology: when interacting with agents with voice, elderly users with high technological experience were less interested and considered the proposed agents less attractive and appealing, while just the opposite occurred when interacting with silenced agents.
    Description: Published
    Description: 4429–4436
    Description: 5TM. Informazione ed editoria
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 33
    Publication Date: 2021-11-03
    Description: Short-term earthquake clustering properties in the Eastern Aegean Sea (Greece) area investigated through the application of an epidemic type stochastic model (Epidemic Type Earthquake Sequence; ETES). The computations are performed in an earthquake catalog covering the period 2008 to 2020 and including 2332 events with a completeness threshold of Mc = 3.1 and separated into two subcatalogs. The first subcatalog is employed for the learning period, which is between 2008/01/01 and 2016/12/31 (N = 1197 earthquakes), and used for the model’s parameters estimation. The second subcatalog from 2017/01/01 to 2020/11/10 (1135 earthquakes), in which the sequences of 2017 Mw = 6.4 Lesvos, 2017 Mw = 6.6 Kos and 2020 Mw = 7.0 Samos main shocks are included, and used for a retrospective forecast testing based on the constructed model. The estimated model parameters imply a swarm like behavior, indicating the ability of earthquakes of small to moderate magnitude above Mc to produce their own offsprings, along with the stronger earthquakes. The retrospective evaluation of the model is examined in the three aftershock sequences, where lack of foreshocks resulted in low predictability of the mainshocks, with estimated daily probabilities around 10– 5. Immediately after the mainshocks occurrence the model adjusts with notable resemblance between the expected and observed aftershock rates, particularly for earthquakes with M ≥ 3.5.
    Description: Published
    Description: 1085–1099
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 34
    Publication Date: 2021-11-29
    Description: This work presents an up-to-date model for the simulation of non-stationary ground motions, including several novelties compared to the original study of Sabetta and Pugliese (Bull Seism Soc Am 86:337–352, 1996). The selection of the input motion in the framework of earthquake engineering has become progressively more important with the growing use of nonlinear dynamic analyses. Regardless of the increasing availability of large strong motion databases, ground motion records are not always available for a given earthquake scenario and site condition, requiring the adoption of simulated time series. Among the different techniques for the generation of ground motion records, we focused on the methods based on stochastic simulations, considering the time- frequency decomposition of the seismic ground motion. We updated the non-stationary stochastic model initially developed in Sabetta and Pugliese (Bull Seism Soc Am 86:337–352, 1996) and later modified by Pousse et al. (Bull Seism Soc Am 96:2103–2117, 2006) and Laurendeau et al. (Nonstationary stochastic simulation of strong ground-motion time histories: application to the Japanese database. 15 WCEE Lisbon, 2012). The model is based on the S-transform that implicitly considers both the amplitude and frequency modulation. The four model parameters required for the simulation are: Arias intensity, significant duration, central frequency, and frequency bandwidth. They were obtained from an empirical ground motion model calibrated using the accelerometric records included in the updated Italian strong-motion database ITACA. The simulated accelerograms show a good match with the ground motion model prediction of several amplitude and frequency measures, such as Arias intensity, peak acceleration, peak velocity, Fourier spectra, and response spectra.
    Description: Published
    Description: 3287–3315
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 35
    Publication Date: 2021-12-01
    Description: Probabilistic earthquake locations provide confidence intervals for the hypocentre solutions such as errors encountered in the position, the origin time, and in magnitude. If the relationship of the parameters relative to the local arrangement of the seismic network is considered, such as the node distance, the number of stations, the seismic gap, and the quality of phase readings), the uncertainties can then provide insights on the location capability of the network. In this paper, we collect the earthquake data recorded from the Italian Seismic Network for a time span of 5 years. The data pertain to three different catalogues according to the progressive refinement phases of the location procedure: automatic location, revised location, and published location. By means of spatial analysis,we assess the distribution of the location-related and network-related estimators across the study area. These estimators are subsequently combined to assess the existence of spatial correlations at a local scale. The results indicate that the Italian network is generally able to provide robust locations at the national scale and for smaller earthquakes, and the elongated shape of Italy (and of its network) does not cause systematic bias in the locations. However, we highlight the existence of subregions in which the performance of the network is weaker. At present, a unique 2D, 3-layer velocity model is used for the earthquake location procedure, and this could represent the main limitation for the improvement of the locations. Therefore, the assessment of locally optimized velocity models is the priority for the homogenization and the improvement of the Italian Seismic Network performance.
    Description: Published
    Description: 1061–1076
    Description: 1IT. Reti di monitoraggio e sorveglianza
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 36
    Publication Date: 2021-12-06
    Description: This paper provides a new contribution to the construction of the complex and fragmentary mosaic of the Late Holocene earthquakes history of the İznik segment of the central strand of the North Anatolian Fault (CNAF) in Turkey. The CNAF clearly displays lower dextral slip rates with respect to the northern strand however, surface rupturing and large damaging earthquakes (M 〉 7) occurred in the past, leaving clear signatures in the built and natural environments. The association of these historical events to specific earthquake sources (e.g., Gemlik, İznik, or Geyve fault segments) is still a matter of debate. We excavated two trenches across the İznik fault trace near Mustafali, a village about 10 km WSW of İznik where the morphological fault scarp was visible although modified by agricultural activities. Radiocarbon and TL dating on samples collected from the trenches show that the displaced deposits are very recent and span the past 2 millennia at most. Evidence for four surface faulting events was found in the Mustafali trenches. The integration of these results with historical data and previous paleoseismological data yields an updated Late Holocene history of surface-rupturing earthquakes along the İznik Fault in 1855, 740 (715), 362, and 121 CE. Evidence for the large M7 + historical earthquake dated 1419 CE generally attributed to this fault, was not found at any trench site along the İznik fault nor in the subaqueous record. This unfit between paleoseismological, stratigraphic, and historical data highlights one more time the urge for extensive paleoseismological trenching and offshore campaigns because of the high potential to solve the uncertainties on the seismogenic history (age, earthquake location, extent of the rupture and size) of this portion of NAFZ and especially on the attribution of historical earthquakes to the causative fault.
    Description: Published
    Description: 115–128
    Description: 2T. Deformazione crostale attiva
    Description: N/A or not JCR
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 37
    Publication Date: 2021-12-09
    Description: Risk assessments in volcanic contexts are complicated by the multi-hazard nature of both unrest and eruption phases, which frequently occur over a wide range of spatial and temporal scales. As an attempt to capture the multi-dimensional and dynamic nature of volcanic risk, we developed an integrAteD VolcanIc risk asSEssment (ADVISE) model that focuses on two temporal dimensions that authorities have to address in a volcanic context: short-term emergency management and long-term risk management. The output of risk assessment in the ADVISE model is expressed in terms of potential physical, functional, and systemic damage, determined by combining the available information on hazard, exposed systems and vulnerability. The ADVISE model permits qualitative, semi-quantitative and quantitative risk assessment depending on the final objective and on the available information. The proposed approach has evolved over a decade of study on the volcanic island of Vulcano (Italy), where recent signs of unrest combined with uncontrolled urban development and significant seasonal variations of exposed population result in highly dynamic volcanic risk. For the sake of illustration of all the steps of the ADVISE model, we focus here on the risk assessment of the transport system in relation to the tephra fallout associated with a long-lasting Vulcanian cycle.
    Description: Published
    Description: 7
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: N/A or not JCR
    Keywords: Emergency management; Functional vulnerability; Hazard; Physical vulnerability; Risk assessment; Risk management; Systemic vulnerability; Vulcano island
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 38
    Publication Date: 2021-12-15
    Description: The Campi Flegrei volcano (or Phlegraean Fields), Campania, Italy, generated the largest eruption in Europe in at least 200 ka. Here we summarise the volcanic and human history of Campi Flegrei and discuss the interactions between humans and the environment within the “burning felds” from around 10,000 years until the 1538 CE Monte Nuovo eruption and more recent times. The region’s incredibly rich written history documents how the landscape changed both naturally and anthropogenically, with the volcanic system fuelling these considerable natural changes. Humans have exploited the beautiful landscape, accessible resources (e.g. volcanic ash for pulvis puteolana mortar) and natural thermal springs associated with the volcano for millennia, but they have also endured the downsides of living in a volcanically active region—earthquakes, signifcant ground deformation and landscape altering eruptions. The pre-historic record is detailed, and various archaeological sites indicate that the region was certainly occupied in the last 10,000 years. This history has been reconstructed by identifying archaeological fnds in sequences that often contain ash (tephra) layers from some of the numerous volcanic eruptions from Campi Flegrei and the other volcanoes in the region that were active at the time (Vesuvius and Ischia). These tephra layers provide both a relative and absolute chronology and allow the archaeology to be placed on a relatively precise timescale. The records testify that people have inhabited the area even when Campi Flegrei was particularly active.The archaeological sequences and outcrops of pyroclastic material preserve details about the eruption dynamics, buildings from Roman times, impressive craters that now host volcanic lakes and nature reserves, all of which make this region particularly mystic and fascinating, especially when we observe how society continues to live within the active caldera system. The volcanic activity and long record of occupation and use of volcanic resources in the region make it unique and here we outline key aspects of its geoheritage.
    Description: Published
    Description: 5
    Description: 1V. Storia eruttiva
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: 6SR VULCANI – Servizi e ricerca per la società
    Description: JCR Journal
    Keywords: Archaeology ; Campania ; Campi Flegrei volcano ; History ; Human
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 39
    Publication Date: 2021-12-15
    Description: Here, we report on the Quaternary Volsci Volcanic Field (VVF, central Italy). In light of new 40Ar/39Ar geochronological data and compositional characterization of juvenile eruptive products, we refine the history of VVF activity, and outline the implications on the pre-eruptive magma system and the continental subduction processes involved. Different from the nearby volcanic districts of the Roman and Campanian Provinces, the VVF was characterized by small-volume (0.01–0.1 km3) eruptions from a network of monogenetic centers (mostly tuff rings and scoria cones, with subordinate lava occurrences), clustered along high-angle faults of lithospheric depth. Leucite-bearing, high-K (HKS) magmas (for which we report for the first time the phlogopite phenocryst compositions) mostly fed the early phase of activity (∼761–539 ka), then primitive, plagioclase-bearing (KS) magmas appeared during the climactic phase (∼424–349 ka), partially overlapping with HKS ones, and then prevailed during the late phase of activity (∼300–231 ka). The fast ascent of primitive magma batches is typical of a tectonically controlled volcanic field, where the very low magma flux is a passive byproduct of regional tectonic strain. We suggest that the dominant compressive stress field acting at depth was accompanied by an extensional regime in the upper crust, associated with the gravity spreading of the Apennine chain, allowing the fast ascent of magma from the mantle source with limited stationing in shallow reservoirs.
    Description: Published
    Description: 689–718
    Description: 1V. Storia eruttiva
    Description: JCR Journal
    Keywords: Quaternary volcanism ; 40Ar/39Ar geochronology ; Tyrrhenian Sea margin ; Central Italy
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 40
    Publication Date: 2021-12-15
    Description: Numerical results of a two-layer depth-averaged model of pyroclastic density currents (PDCs) were compared with an experimental PDC generated at the international eruption simulator facility (the Pyroclastic flow Eruption Large-scale Experiment (PELE)) to establish a minimal dynamical model of PDCs with stratification of particle concentrations. In the present two-layer model, the stratification in PDCs is modeled as a voluminous suspended-load layer with low particle volume fractions ( ≲ 10−3) and a thin basal bed-load layer with higher particle volume fractions ( ∼ 10−2 ) on the basis of the source condition in the experiment. Numerical results for the suspended load quantitatively reproduce the time evolutions of the front position and flow thickness in the experimental PDC. The numerical results of the bed-load and deposit thicknesses depend on an assumed value of settling speed at the bottom of the bed load ( WsH ). We show that the thicknesses of bed load and deposit in the simulations agree well with the experimental data, when WsH is set to about 1.25 × 10−2 m/s. This value of the settling speed is two orders of magnitude smaller than that predicted by a hindered-settling model. The small value of WsH is considered to result from decreasing in the effective deposition speed due to the erosion process accompanied by saltating/rolling of particles at the bottom of the bed load.
    Description: Published
    Description: 73
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Keywords: Pyroclastic density current ; Two-layer model ; Experimental validation ; Pyroclastic surge ; Bed load ; Sedimentation process Introduction ; 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 41
    Publication Date: 2021-12-16
    Description: A new analysis of high-resolution multibeam and seismic reflection data, collected during several oceanographic expeditions starting from 1999, allowed us to compile an updated morphotectonic map of the North Anatolian Fault below the Sea of Marmara. We reconstructed kinematics and geometries of individual fault segments, active at the time scale of 10 ka, an interval which includes several earthquake cycles, taking as stratigraphic marker the base of the latest marine transgression. Given the high deformation rates relative to sediment supply, most active tectonic structures have a morphological expression at the seafloor, even in presence of composite fault geometries and/or overprinting due to mass-wasting or turbidite deposits. In the frame of the right-lateral strike-slip domain characterizing the North Anatolian fault system, three types of deformation are observed: almost pure strike-slip faults, oriented mainly E–W; NE/SW-aligned axes of transpressive structures; NW/SE-oriented trans-tensional depressions. Fault segmentation occurs at different scales, but main segments develop alongthree major right-lateral oversteps, which delimit main fault branches, from east to west: (i) the transtensive Cinarcik segment; (ii) the Central (East and West) segments; and (iii) the westernmost Tekirdag segment. A quantitative morphometric analysis of the shallow deformation patterns observed by seafloor morphology maps and high-resolution seismic reflection profiles along the entire basin allowed to determine nature and cumulative lengths of individual fault segments. These data were used as inputs for empirical relationships, to estimate maximum expected Moment Magnitudes, obtaining values in the range of 6.8–7.4 for the Central, and 6.9–7.1 for the Cinarcik and Tekirdag segments, respectively. We discuss these findings considering analyses of historical catalogues and available paleoseismological studies for the Sea of Marmara regionto formulate reliable seismic hazard scenarios.
    Description: Published
    Description: 29–44
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: N/A or not JCR
    Keywords: North Anatolian fault · ; Sea of Marmara ; Earthquakes ; Active fault segments ; Marine geophysics ; Seismic hazard ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 42
    Publication Date: 2021-12-22
    Description: Future occurrence of explosive eruptive activity at Cotopaxi and Guagua Pichincha volcanoes, Ecuador, is assessed probabilistically, utilizing expert elicitation. Eight eruption types were considered for each volcano. Type event probabilities were evaluated for the next eruption at each volcano and for at least one of each type within the next 100 years. For each type, we elicited relevant eruption source parameters (duration, average plume height, and total tephra mass). We investigated the robustness of these elicited evaluations by deriving probability uncertainties using three expert scoring methods. For Cotopaxi, we considered both rhyolitic and andesitic magmas. Elicitation findings indicate that the most probable next eruption type is an andesitic hydrovolcanic/ash-emission (~ 26–44% median probability), which has also the highest median probability of recurring over the next 100 years. However, for the next eruption at Cotopaxi, the average joint probabilities for sub-Plinian or Plinian type eruption is of order 30–40%—a significant chance of a violent explosive event. It is inferred that any Cotopaxi rhyolitic eruption could involve a longer duration and greater erupted mass than an andesitic event, likely producing a prolonged emergency. For Guagua Pichincha, future eruption types are expected to be andesitic/dacitic, and a vulcanian event is judged most probable for the next eruption (median probability ~40–55%); this type is expected to be most frequent over the next 100 years, too. However, there is a substantial probability (possibly 〉40% in average) that the next eruption could be sub-Plinian or Plinian, with all that implies for hazard levels.
    Description: Published
    Description: 35
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 43
    Publication Date: 2021-12-22
    Description: Exposure to volcanic ash is a long-standing health concern for people living near active volcanoes and in distal urban areas. During transport and deposition, ash is subjected to various physicochemical processes that may change its surface composition and, consequently, bioreactivity. One such process is the interaction with anthropogenic pollutants; however, the potential for adsorbed, deleterious organic compounds to directly impact human health is unknown. We use an in vitro bioanalytical approach to screen for the presence of organic compounds of toxicological concern on ash surfaces and assess their biological potency. These compounds include polycyclic aromatic hydrocarbons (PAHs), polychlorinated dibenzop- dioxins and dibenzofurans (PCDD/Fs) and dioxin-like polychlorinated biphenyls (dlPCBs). Analysis of ash collected in or near urbanised areas at five active volcanoes across the world (Etna, Italy; Fuego, Guatemala; Kelud, Indonesia; Sakurajima, Japan; Tungurahua, Ecuador) using the bioassay inferred the presence of such compounds on all samples. A relatively low response to PCDD/Fs and the absence of a dlPCBs response in the bioassay suggest that the measured activity is dominated by PAHs and PAH-like compounds. This study is the first to demonstrate a biological potency of organic pollutants associated with volcanic ash particles. According to our estimations, they are present in quantities below recommended exposure limits and likely pose a low direct concern for human health.
    Description: Published
    Description: 30
    Description: 7SR AMBIENTE – Servizi e ricerca per la società
    Description: JCR Journal
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  • 44
    Publication Date: 2022-02-15
    Description: Correction to: Bulletin of Earthquake Engineering https://doi.org/10.1007/s10518-021-01077-1
    Description: Published
    Description: 3317
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 45
    Publication Date: 2021-12-13
    Description: Poás is a complex stratovolcano with an altitude of 2,708 m asl, located in the Cordillera Volcánica Central of Costa Rica. Prior to 2017, the last three historical eruptions occurred on 7 February 1834, between January and May 1910 and during the period 1953-1955. Very few literature exists on the 1834 eruption. The only references state that it was an important event, that ash reached 〉53 km W-SW of Poás, and that it harmed the grasslands around the volcano. Related deposits of this eruption suggest phreatic activity, which launched bombs and blocks. Moreover, there is evidence of pyroclastic flow deposits near the crater. The 1910 eruption is better described. Despite the fact that ash fall is only reported near the volcano, a volume of the deposit of 1.6 x 107 m3 is estimated. Deposits of the eruption are white in color with many hydrothermally altered, and minor presence of juvenile fragments (vesicular lapilli). The eruption is classified as vulcanian, with deposits of ash fall and pyroclastic flows close to the crater. A Volcano Explosivity Index 3 (VEI 3) is estimated. The eruption affected agriculture. The 1953-1955 eruptions had a longer duration. Various ash fall deposits at several sites are reported. Deposits of this eruption, easily distinguished in the field, are black scoria lapilli, bombs with, sometimes fusiform, bread crust textures. In the eastern sector of the crater bombs can reach meters in size; such large bombs near the eruption centre at one side suggest the inclination of the eruptive conduct, or an asymmetrical vent-crater system. Inside the crater a 40 m-high dome and a lava flow were extruded during the eruption. Towards the east side of the current Laguna Caliente crater lake, relicts of a 8.5 m thick lava pool are found. During the entire eruptive episode, the acid lake presumably lacked. The eruption is described to be of a mixed type: strombolian, phreatomagmatic, vulcanian and dome extrusion eruptions. Considering the characteristics of this eruption, the height of the eruption column, ejected volume (2.1 x 107  m3), and its presumed duration, a VEI 3 is estimated. The eruptions damaged agricultural activity (including cattle), and forced the spontaneous evacuation of some people. In April 2017 magmatic eruptions followed a decade-long period of intense phreatic activity. These eruptions destroyed the 1953-1955 Dome and led to the complete dry out of Laguna Caliente. Pyroclastic cones and sulphur volcanism manifested at the bottom of the former crater lake bottom. The 2017 eruption severely affected touristic activities at and near Poás, with an estimated economic loss of 20 million dollars. By May-August 2018 Laguna Caliente reappeared. The volcanic hazards related to the three studied historical eruptions are: pyroclastic flows (at least 1 km from the eruptive centre, including reaching the current mirador sector), ballistics (bomb ejections up to 2 km from the emission centre), dispersion and fall of pyroclasts (tens of kms), gas emission and acid rain, dispersed by WSW dominant winds, and lahars in most of the river canyons SW of the volcano.  
    Description: Published
    Description: 261-299
    Description: 1V. Storia eruttiva
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 46
    Publication Date: 2021-11-26
    Description: Integrating palaeoclimatological proxies and historical records, which is necessary to achieve a more complete understanding of climate impacts on past societies, is a challenging task, often leading to unsatisfactory and even contradictory conclusions. This has until recently been the case for Italy, the heart of the Roman Empire, during the transition between Antiquity and the Middle Ages. In this paper, we present new high-resolution speleothem data from the Apuan Alps (Central Italy). The data document a period of very wet conditions in the sixth c. AD, probably related to synoptic atmospheric conditions similar to a negative phase of the North Atlantic Oscillation. For this century, there also exist a significant number of historical records of extreme hydroclimatic events, previously discarded as anecdotal. We show that this varied evidence reflects the increased frequency of floods and extreme rainfall events in Central and Northern Italy at the time. Moreover, we also show that these unusual hydroclimatic conditions overlapped with the increased presence of "water miracles" in Italian hagiographical accounts and social imagination. The miracles, performed by local Church leaders, strengthened the already growing authority of holy bishops and monks in Italian society during the crucial centuries that followed the "Fall of the Roman Empire". Thus, the combination of natural and historical data allows us to show the degree to which the impact of climate variability on historical societies is determined not by the nature of the climatic phenomena per se, but by the culture and the structure of the society that experienced it.
    Description: Published
    Description: 25
    Description: 5A. Ricerche polari e paleoclima
    Description: JCR Journal
    Keywords: Precipitation ; Roman Empire ; miracles ; Social feedbacks ; Cultural change ; climate change
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 47
    Publication Date: 2021-11-29
    Description: In this paper the site categorization criteria and the corresponding site amplification factors proposed in the 2021 draft of Part 1 of Eurocode 8 (2021-draft, CEN/TC250/SC8 Working Draft N1017) are first introduced and compared with the current version of Eurocode 8, as well as with site amplification factors from recent empirical ground motion prediction equations. Afterwards, these values are checked by two approaches. First, a wide dataset of strong motion records is built, where recording stations are classified according to 2021-draft, and the spectral amplifications are empirically estimated computing the site-to-site residuals from regional and global ground motion models for reference rock conditions. Second, a comprehensive parametric numerical study of one-dimensional (1D) site amplification is carried out, based on randomly generated shear-wave velocity profiles, classified according to the new criteria. A reasonably good agreement is found by both approaches. The most relevant discrepancies occur for the shallow soft soil conditions (soil category E) that, owing to the complex interaction of shear wave velocity, soil deposit thickness and frequency range of the excitation, show the largest scatter both in terms of records and of 1D numerical simulations. Furthermore, 1D numerical simulations for soft soil conditions tend to provide lower site amplification factors than 2021-draft, as well as lower than the corresponding site-to-site residuals from records, because of higher impact of non-linear (NL) site effects in the simulations. A site-specific study on NL effects at three KiK-net stations with a significantly large amount of high-intensity recorded ground motions gives support to the 2021-draft NL reduction factors, although the very limited number of recording stations allowing such analysis prevents deriving more general implications. In the presence of such controversial arguments, it is reasonable that a standard should adopt a prudent solution, with a limited reduction of the site amplification factors to account for NL soil response, while leaving the possibility to carry out site-specific estimations of such factors when sufficient information is available to model the ground strain dependency of local soil properties.
    Description: Published
    Description: 4199–4234
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 48
    Publication Date: 2021-12-09
    Description: Volcano-hydrothermal systems are governed by complex interactions between fluid transport, and geochemical and mechanical processes. Evidence of this close interplay has been testified by distinct spatial and temporal correlations in geochemical and geophysical observations at Vulcano Island (Italy). To understand the interaction between fluid circulation and the geochemical and geophysical manifestations, we perform a parametric study to explore different scenarios by implementing a hydro-geophysical model based on the equations for heat and mass transfer in a porous medium and thermo-poroelastic theory. Numerical simulations allow us to define the controlling role of permeability distribution on the different modeled parameters as well as on the geophysical observables. Changes in the permeability within the highly fractured crater area could be responsible for the fluctuations in gas emission and temperature recorded during the crisis periods, which are accompanied by shallow volcano-seismicity in the absence of significant deformation and gravity variations. Despite the general medium permeability of the volcanic edifice, the presence of more highly permeable pathways, which allow the gas to rapidly escape, as testified by the presence of a well-developed fumarolic field, prevents the pressure buildup at shallow depths.
    Description: Published
    Description: 179
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
    Keywords: Hydrothermal system ; Parametric simulation ; Vulcano Island ; Hydro-geophysical model
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 49
    Publication Date: 2021-11-29
    Description: ShakeMap is the tool to evaluate the ground motion effect of earthquakes in vast areas. It is useful to delimit the zones where the shaking is expected to have been most significant, for civil defense rapid response. From the earthquake engineering point of view, it can be used to infer the seismic actions on the built environment to calibrate vulnerability models or to define the reconstruction policies based on observed damage vs shaking. In the case of long-lasting seismic sequences, it can be useful to develop ShakeMap envelopes, that is, maps of the largest ground intensity among those from the ShakeMap of (selected) events of a seismic sequence, to delimit areas where the effects of the whole sequence have been of structural engineering relevance. This study introduces ShakeMap envelopes and discusses them for the central Italy 2016–2017 seismic sequence. The specific goals of the study are: (i) to compare the envelopes and the ShakeMap of the main events of the sequence to make the case for sequence-based maps; (ii) to quantify the exceedance of design seismic actions based on the envelopes; (iii) to make envelopes available for further studies and the reconstruction planning; (iv) to gather insights on the (repeated) exceedance of design seismic actions at some sites. Results, which include considerations of uncertainty in ShakeMap, show that the sequence caused exceedance of design hazard in thousands of square kilometers. The most relevant effects of the sequence are, as expected, due to the mainshock, yet seismic actions larger than those enforced by the code for structural design are found also around the epicenters of the smaller magnitude events. At some locations, the succession of ground-shaking that has excited structures, provides insights on structural damage accumulation that has likely taken place; something that is not accounted for explicitly in modern seismic design. The envelopes developed are available as supplemental material.
    Description: Published
    Description: 5391–5414
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 50
    Publication Date: 2021-12-09
    Description: Lahars are rapid flows composed of water and volcaniclastic sediments, which have the potential to impact residential buildings and critical infrastructure as well as to disrupt critical services, especially in the absence of hazard-based land-use planning. Their destructive power is mostly associated with their velocity (related to internal flow properties and topographic interactions) and to their ability to bury buildings and structures (due to deposit thickness). The distance reached by lahars depends on their volume, on sediments/water ratio, as well as on the geometrical properties of the topography where they propagate. Here we present the assessment of risk associated with lahar using Vulcano island (Italy) as a case study. First, we estimated an initial lahar source volume considering the remobilisation by intense rain events of the tephra fallout on the slopes of the La Fossa cone (the active system on the island), where the tephra fallout is associated with the most likely scenario (e.g. long-lasting Vulcanian cycle). Second, we modelled and identified the potential syn-eruptive lahar impact areas on the northern sector of Vulcano, where residential and touristic facilities are located. We tested a range of parameters (e.g., entrainment capability, consolidation of tephra fallout deposit, friction angle) that can influence lahar propagation output both in terms of intensity of the event and extent of the inundation area. Finally, exposure and vulnerability surveys were carried out in order to compile exposure and risk maps for lahar-flow front velocity (semi-quantitative indicator-based risk assessment) and final lahar-deposit thickness (qualitative exposure-based risk assessment). Main outcomes show that the syn-eruptive lahar scenario with medium entrainment capability produces the highest impact associated with building burial by the final lahar deposit. Nonetheless, the syn-eruptive lahar scenario with low entrainment capacity is associated with higher runout and results in the highest impact associated with lahar-flow velocities. Based on our simulations, two critical infrastructures (telecommunication and power plant), as well as the main road crossing the island are exposed to potential lahar impacts (either due to lahar-flow velocity or lahar-deposit thickness or both). These results show that a risk-based spatial planning of the island could represent a valuable strategy to reduce the volcanic risk in the long term.
    Description: Published
    Description: 9
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: N/A or not JCR
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  • 51
    Publication Date: 2021-12-24
    Description: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2021. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Description: Ambient-noise records from the AlpArray network are used to measure Rayleigh wave phase velocities between more than 150,000 station pairs. From these, azimuthally anisotropic phase-velocity maps are obtained by applying the Eikonal tomography method. Several synthetic tests are shown to study the bias in the Ψ2 anisotropy. There are two main groups of bias, the first one caused by interference between refracted/reflected waves and the appearance of secondary wavefronts that affect the phase travel-time measurements. This bias can be reduced if the amplitude field can be estimated correctly. Another source of error is related to the incomplete reconstruction of the travel-time field that is only sparsely sampled due to the receiver locations. Both types of bias scale with the magnitude of the velocity heterogeneities. Most affected by the spurious Ψ2 anisotropy are areas inside and at the border of low-velocity zones. In the isotropic velocity distribution, most of the bias cancels out if the azimuthal coverage is good. Despite the lack of resolution in many parts of the surveyed area, we identify a number of anisotropic structures that are robust: in the central Alps, we find a layered anisotropic structure, arc-parallel at midcrustal depths and arc-perpendicular in the lower crust. In contrast, in the eastern Alps, the pattern is more consistently E-W oriented which we relate to the eastward extrusion. The northern Alpine forleand exhibits a preferential anisotropic orientation that is similar to SKS observations in the lowermost crust and uppermost mantle.
    Description: German Science Foundation (SPP-2017, Project Ha 2403/21-1); Swiss National Science Foundation SINERGIA Project CRSII2-154434/1 (Swiss-AlpArray); Progetto Pianeta Dinamico, finanziamento MUR-INGV, Task S2 – 2021
    Description: Published
    Description: 151–170
    Description: 1T. Struttura della Terra
    Description: JCR Journal
    Keywords: Seismic anisotropy ; Seismic interferometry ; Seismic tomography ; Wave propagation ; Continental tectonics: compressional ; 04.01. Earth Interior ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 52
    Publication Date: 2021-12-15
    Description: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2022. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Description: To understand the seismotectonics and the seismic hazard of the study sector of the Northern Apennines (Italy), one of the most important earthquakes of magnitude Mw = 6.5 which struck the Lunigiana and Garfagnana areas (Tuscany) on 7 September 1920 should be studied. Given the early instrumental epoch of the event, neither geometric and kinematic information on the fault-source nor its fault-plane solution were available. Both areas were candidates for hosting the source fault and there was uncertainty between a normal fault with Apenninic direction or an anti-Apenninic strike-slip. We retrieved 11 focal parameters (including the fault-plane solution) of the 1920 earthquake. Only macroseismic intensity information (from 499 inhabited centres) through the KF-NGA inversion technique was used. This technique uses a Kinematic model of the earthquake source and speeds up the calculation by a Genetic Algorithm with Niching. The result is a pure dip-slip focal solution. The intrinsic ambiguities of the KF-NGA method (±180° on the rake angle; choice of the fault plane between the two nodal planes) were solved with field and seismotectonic evidence. The earthquake was generated by a normal fault (rake angle = 265° ± 8°) with an Apennine direction (114° ± 5°) and dipping 38° ± 6° towards SW. The likely candidate for hosting the source-fault in 1920 is the Compione-Comano fault that borders the NE edge of the Lunigiana graben. The KF-NGA algorithm proved to be invaluable for studying the kinematics of early instrumental earthquakes and allowed us to uniquely individuate, for the first time ever, the seismogenic source of the 1920 earthquake. Our findings have implications in hazard computation and seismotectonic contexts.
    Description: Published
    Description: 1465–1477
    Description: 4T. Sismicità dell'Italia
    Description: JCR Journal
    Keywords: Inverse theory ; Body waves ; Earthquake source observations ; Seismicity and tectonics ; Dynamics: seismotectonics ; Fractures, faults, and high strain deformation zones ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 53
    Publication Date: 2021-12-22
    Description: Systematic variations in the crystal cargo and whole-rock isotopic compositions of mantle-derived basalts in the intraplate Dunedin Volcano (New Zealand) indicate the influence of a complex mantle-to-crust polybaric plumbing system. Basaltic rocks define a compositional spectrum from low-alkali basalts through mid-alkali basalts to high-alkali basalts. High-alkali basalts display clinopyroxene crystals with sector (hourglass) and oscillatory zoning (Mg#61–82) as well as Fe-rich green cores (Mg#43–69), whereas low-alkali basalts are characterized by clinopyroxenes with unzoned overgrowths (Mg#69–83) on resorbed mafic cores (Mg#78–88), coexisting with reversely zoned plagioclase crystals (An43–68 to An60–84 from core to rim). Complex magma dynamics are indicated by distinctive compositional variations in clinopyroxene phenocrysts, with Cr-rich zones (Mg#74–87) indicating continuous recharge by more mafic magmas. Crystallization of olivine, clinopyroxene and titanomagnetite occurred within a polybaric plumbing system extending from upper mantle to mid-crustal depths (485–1059 MPa and 1147–1286°C), whereas crystallization of plagioclase with subordinate clinopyroxene and titanomagnetite proceeded towards shallower crustal levels. The compositions of high-alkali basalts and mid-alkali basalts resemble those of ocean island basalts and are characterized by FOZO-HIMU isotopic signatures (87Sr/86Sri = 0.70277–0.70315, 143Nd/144Ndi = 0.51286–0.51294 and 206Pb/204Pb = 19.348–20.265), whereas low-alkali basalts have lower incompatible element abundances and isotopic compositions trending towards EMII (87Sr/86Sri = 0.70327–70397, 143Nd/144Ndi = 0.51282–0.51286 and 206Pb/204Pb = 19.278–19.793). High- and mid-alkali basalt magmas mostly crystallized in the lower crust, whereas low-alkali basalt magma recorded deeper upper mantle clinopyroxene crystallization before eruption. The variable alkaline character and isotope composition may result from interaction of low-alkaline melts derived from the asthenosphere with melts derived from lithospheric mantle, possibly initiated by asthenospheric melt percolation. The transition to more alkaline compositions was induced by variable degrees of melting of metasomatic lithologies in the lithospheric mantle, leading to eruption of predominantly small-volume, high-alkali magmas at the periphery of the volcano. Moreover, the lithosphere imposed a filtering effect on the alkalinity of these intraplate magmas. As a consequence, the eruption of low-alkali basalts with greater asthenospheric input was concentrated at the centre of the volcano, where the plumbing system was more developed.
    Description: Published
    Description: egab062
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: 3V. Proprietà chimico-fisiche dei magmi e dei prodotti vulcanici
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
    Keywords: alkali basalts ; Dunedin Volcano ; thermobarometry ; primary magma ; lithospheric mantle filter ; Igneous Petrology ; Thermobarometry ; Mantle melting and metasomatism ; Magmatic plumbing systems
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 54
    Publication Date: 2022-02-14
    Description: Recent studies point to the sensitivity of mid-latitude winter climate to Arctic sea ice variability. However, there remain contradictory results in terms of character and timing of Northern Hemisphere large-scale circulation features to Arctic sea ice changes. This study assesses the impact of realistic late autumn eastern Arctic sea ice anomalies on atmospheric wintertime circulation at mid-latitudes, pointing to a hidden potential for seasonal predictability. ​Using a dynamical seasonal prediction system, an ensemble of seasonal forecast simulations of 23 historical winter seasons is run with reduced November sea ice cover in the Barents-Kara Seas, and is compared to the respective control seasonal hindcast simulations set. ​A non energy-conserving approach is adopted for achieving the desired sea ice loss, with artificial heat being added conditionally to the ocean surface heat fluxes so as to inhibit the formation of sea ice during November. Our results point to a robust atmospheric circulation response in the North Pacific sector, similar to previous findings on the multidecadal timescale. Specifically, an anticyclonic anomaly at upper and lower levels is identified over the eastern midlatitude North Pacific, leading to dry conditions over the North American southwest coast. The responses are related to a re-organization (weakening) of west-Pacific tropical convection and interactions with the tropical Hadley circulation. ​A possible interaction of the poleward-shifted Pacific eddy-driven jet stream and the Hadley cell is discussed​. ​The winter circulation response in the Euro-Atlantic sector is ephemeral in character and statistically significant in January only, corroborating previous findings of an intermittent and non-stationary Arctic sea ice-NAO link during boreal winter. These results ​aid our understanding of the seasonal impacts of reduced eastern Arctic sea ice on the midlatitude atmospheric circulation with implications for seasonal predictability in wintertime.
    Description: Published
    Description: 2687–2700
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 55
    Publication Date: 2021-12-23
    Description: Gender equality is a fundamental human right, embedded into the United Nations Charter (1945). Women still face multiple forms of discrimination, harassment and abuse. Gender equality is foundational to ensuring inclusive sustainable socio-economic development, peace and justice.
    Description: Published
    Description: 105-126
    Description: 1TM. Formazione
    Description: 3TM. Comunicazione
    Keywords: gender equality ; sustainable development goals ; geosciences ; geoethics ; women ; girls ; 05.03. Educational, History of Science, Public Issues ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 56
    Publication Date: 2021-12-13
    Description: Analyzing seismic data to get information about earthquakes has always been a major task for seismologists and, more in general, for geophysicists. Recently, thanks to the technological development of observation systems, more and more data are available to perform such tasks. However, this data “grow up” makes “human possibility” of data processing more complex in terms of required efforts and time demanding. That is why new technological approaches such as artificial intelligence are becoming very popular and more and more exploited. In this paper, we explore the possibility of interpreting seismic waveform segments by means of pre-trained deep learning. More specifically, we apply convolutional networks to seismological waveforms recorded at local or regional distances without any pre-elaboration or filtering. We show that such an approach can be very successful in determining if an earthquake is “included” in the seismic wave image and in estimating the distance between the earthquake epicenter and the recording station.
    Description: Published
    Description: 1347–1359
    Description: 1T. Struttura della Terra
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 57
    Publication Date: 2021-10-25
    Description: Themain climatological features of the ionospheric equivalent slab thickness (τ ) for the Northern hemispheremidlatitudes are analyzed. F2-layer peak electron density values recorded at three midlatitude ionospheric stations (Chilton 51.5° N, 0.6° W, U.K.; Roquetes 40.8° N, 0.5° E, Spain;Wallops Island 37.9° N, 75.5°W, USA) and vertical total electron content values from colocated ground-based Global Navigation Satellite System receivers are used to calculate a dataset of τ values for the last two solar cycles, considering only magnetically quiet periods. Results are presented both as grids of binned medians and as boxplots as a function of local time and month of the year, for different solar activity levels. Corresponding trends are first compared to those output by the midlatitude empirical model developed by Fox et al. (Radio Sci 26:429–438, 1991) and then discussed in the light of what is known so far. From this investigation, the strong need to implement an improved empirical model of τ has emerged. Both Space Weather and Space Geodesy applications might benefit from such model. Therefore, both the dataset and the methodology described in the paper represent a first fundamental step aimed at implementing an empirical climatological model of the ionospheric equivalent slab thickness. The study highlighted also that at midlatitudes τ shows the following main patterns: daytime values considerably smaller than nighttime ones (except in summer); well-defined maxima at solar terminator hours; a greater dispersion during nighttime and solar terminator hours; no clear and evident solar activity dependence.
    Description: Published
    Description: 124
    Description: 2A. Fisica dell'alta atmosfera
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 58
    Publication Date: 2021-12-13
    Description: Hydrogeoethics is an emergent transdisciplinary field in geosciences focused on ethical research and best practices related to responsible groundwater science and engineering, creating conditions for sustainable water resources management while respecting human needs and environmental dynamics.
    Description: Published
    Description: 289–292
    Description: 1TR. Georisorse
    Description: N/A or not JCR
    Keywords: Hydrogeoethics ; Geoethics ; Water resources ; Water management ; Water scarcity ; Sustainability ; Mediterranea region ; 03.02. Hydrology ; 05.03. Educational, History of Science, Public Issues ; 05.09. Miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 59
    Publication Date: 2021-11-26
    Description: The eruption of basaltic magmas dominates explosive volcanism on Earth and other planets within the Solar System. The mechanism through which continuous magma fragments into volcanic particles is central in governing eruption dynamics and the ensuing hazards. However, the mechanism of fragmentation of basaltic magmas is still disputed, with both viscous and brittle mechanisms having been proposed. Here we carry out textural analysis of the products of ten eruptions from seven volcanoes by scanning electron microscopy. We find broken crystals surrounded by intact glass that testify to the brittle fragmentation of basaltic magmas during explosive activity worldwide. We then replicated the natural textures of broken crystals in laboratory experiments where variably crystallized basaltic melt was fragmented by rapid deformation. The experiments reveal that crystals are broken by the propagation of a network of fractures through magma, and that afterwards the fractures heal by viscous flow of the melt. Fracturing and healing affect gas mobility, stress distribution, and bubble and crystal size distributions in magma. Our results challenge the idea that the grain size distribution of basaltic eruption products reflects the density of fractures that initially fragmented the magma and ultimately indicate that brittle fracturing and viscous healing of magma may underlie basaltic explosive eruptions globally.
    Description: Published
    Description: 248–254
    Description: 4V. Processi pre-eruttivi
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 60
    Publication Date: 2021-12-10
    Description: Groundwater close to three municipal solid waste landfll sites in Sicily (southern Italy) was sampled to determine the presence of contaminants and the risk associated with its possible use as drinking and sanitary water. Polycyclic aromatic hydrocarbons, polychlorinated biphenyls, polychlorinated dibenzo-p-dioxins, polychlorinated dibenzofurans, and metals were investigated. These target compounds are the most common pollutants present in leachates. Risk Assessment Guidance for Superfund (RAGS, US EPA) was used to assess human health risk. Ingestion, dermal, and total exposure to these xenobiotic contaminants in groundwater were evaluated, and the cancer and non-cancer risk indexes were calculated. The results revealed that, while the groundwater complied with Italian Drinking Water Directive 30/2001, it did not comply with the "good environmental state" criteria of Directive 30/2009 at two of the three sites investigated. Worrying results were revealed by the risk assessment at the investigated sites. Cancer and non-cancer risk indexes indicated a probable risk, mainly due to dermal exposure to groundwater. These results underline the importance of assessing the risk for all possible routes, evaluating not only ingestion but also dermal exposure, especially when organic pollutants are present. The results of this study show that human health risk has probably been underestimated in the past, as dermal exposure to organic pollutants has only rarely been evaluated in the literature.
    Description: Published
    Description: 535–550
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Human health risk ; Polycyclic aromatic hydrocarbons ; Polychlorinated biphenyls ; Dioxin PCDD/Fs ; Toxic elements ; Environmental quality standard
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 61
    Publication Date: 2021-11-25
    Description: The island of Ischia, located in the Gulf of Naples, represents an unusual case of resur- gent caldera where small-to-moderate magnitude volcano-tectonic earthquakes generate large damage and catastrophic e ects, as in the case of 4 March 1881 (Imax-VIII-IXMCS) and 28 July 1883 (Imax X-XI MCS) historical earthquakes, and of the recent 21 August 2017 MW=3.9, event. All these earthquakes struck the northern area of the island. With about 65,000 inhabitants, Ischia is a popular touristic destination for thermals baths, host- ing more than 3,000,000 visitors per year, thus representing a high seismic risk area. Assessing its seismic potential appears a fundamental goal and, to this end, the estimate of the magnitude of signi cant historical events and the characterization of their source are crucial. We report here a reassessment of historical data of damage of 1881 and 1883 earth- quakes to evaluate the main source parameters of these events (obtained with the BOXER and EXISM software) and quantitatively compare, for the rst time, the results with the source characteristics, obtained from instrumental data, of the recent 2017 earthquake. The results allowed us to assess the location, as well as the possible dimension and the related maximum magnitude, of the seismogenic structure responsible for such damaging earth- quakes. Our results also provide an additional framework to de ne the mechanisms leading to earthquakes associated with the dynamics of calderas.
    Description: Published
    Description: 177–201
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
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  • 62
    Publication Date: 2021-11-26
    Description: The AD 1761 eruption on Terceira was the onlyhistorical subaerial event on the island and one of the lastrecorded in the Azores. The eruption occurred along the fis-sure zone that crosses the island and produced a trachybasaltlava flow and scoria cones. Small comenditic trachyte lava domes (known as Mistérios Negros) were also thought by some to have formed simultaneously on the eastern flank of Santa Bárbara Volcano. Following a multidisciplinary approach, we combined geological mapping, paleomagnetic, petrographic, mineral and whole-rock geochemical and structural analyses to study this eruption. The paleomagnetic dating method compared geomagnetic vectors (directions and intensities) recorded by both the AD 1761 lava flow and Mistérios Negros domes and revealed that the two events were indeed coeval. Based on new data and interpretation of historical records, we have accordingly reconstructed the AD 1761eruptive dynamics and distinguished three phases: (1) a pre-cursory phase characterized by decreased degassing in the fumarolic field of Pico Alto Volcano and a gradual increase of seismic activity, which marked the intrusion of trachybasalt magma; (2) a first eruptive phase that started with phreatic explosions on the eastern flank of Santa Bárbara Volcano, followed by the inconspicuous effusion of comenditic trachyte (66 wt% SiO2), forming a WNW-ESE-oriented chain of lava domes; and (3) a second eruptive phase on the central part ofthe fissure zone, where a Hawaiian to Strombolian-style erup-tion formed small scoria cones (E-W to ENE-WSW-oriented)and a trachybasalt lava flow (50 wt% SiO2) which buried 27houses in Biscoitos village. Petrological analyses show thatthe two batches of magma were emitted independently without evidence of interaction. We envisage that the dome-forming event was triggered by local stress changes induced by intrusion of the trachybasalt dyke along the fissure zone, which created tensile stress conditions that promoted ascent of comenditic trachyte magma stored beneath Santa Bárbara Volcano.
    Description: Published
    Description: 22
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 63
    Publication Date: 2022-02-11
    Description: Magmatism accompanies rifting along divergent plate boundaries, although its role before continental breakup remains poorly understood. For example, the magma-assisted Northern Main Ethiopian Rift (NMER) lacks current volcanism and clear tectono-magmatic relationships with its contiguous rift portions. Here we define its magmatic behaviour, identifying the most recent eruptive fissures (EF) whose aphyric basalts have a higher Ti content than those of older monogenetic scoria cones (MSC), which are porphyritic and plagioclase-dominated. Despite these differences, calculations highlight a similar parental melt for EF and MSC products, suggesting only a different evolutionary history after melt generation. While MSC magmas underwent a further step of storage at intermediate crustal levels, EF magmas rose directly from the base of the crust without contamination, even below older polygenetic volcanoes, suggesting rapid propagation of transcrustal dikes across solidified magma chambers. Whether this recent condition in the NMER is stable or transient, it indicates a transition from central polygenetic to linear fissure volcanism, indicative of increased tensile conditions and volcanism directly fed from the base of the crust, suggesting transition towards mature rifting.
    Description: Published
    Description: 21821
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: JCR Journal
    Keywords: 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 64
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    Springer Nature
    Publication Date: 2021-12-24
    Description: This book serves as a guide to discovering the most interesting volcano sites in Italy. Accompanied by some extraordinary contemporary images of active Neapolitan volcanoes, it explains the main volcanic processes that have been shaping the landscape of the Campania region and influencing human settlements in this area since Greek and Roman times and that have prompted leading international scientists to visit and study this natural volcanology laboratory. While volcanology is the central topic, the book also addresses other aspects related to the area’s volcanism and is divided into three sections: 1) Neapolitan volcanic activity and processes (with a general introduction to volcanology and its development around Naples together with descriptions of the landscape and the main sites worth visiting); 2) Volcanoes and their interactions with local human settlements since the Bronze Age, recent population growth and the transformation of the territory; 3) The risks posed by Neapolitan Volcanoes, their recent activity and the problem of forecasting any future eruption.
    Description: Published
    Description: 2TM. Divulgazione Scientifica
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book
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  • 65
    facet.materialart.
    Unknown
    Springer Nature
    In:  EPIC3npj Climate and Atmospheric Science, Springer Nature, 4(1), ISSN: 2397-3722
    Publication Date: 2022-02-15
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 66
    Publication Date: 2022-07-13
    Description: We present an interdisciplinary review of the observed and projected variations in atmospheric and oceanic circulation within the southwestern South Atlantic focused on basin-scale processes driven by climate change, and their potential impact on the regional fisheries. The observed patterns of atmospheric circulation anomalies are consistent with anthropogenic climate change. There is strong scientific evidence suggesting that the Brazil Current is intensifying and shifting southwards during the past decades in response to changes in near-surface wind patterns, leading to intense ocean warming along the path of the Brazil Current, the South Brazil Bight, and in the Río de la Plata. These changes are presumably responsible for the poleward shift of commercially important pelagic species in the region and the long-term shift from cold-water to warm-water species in industrial fisheries of Uruguay. Scientific and traditional knowledge shows that climate change is also affecting small-scale fisheries. Long-term records suggest that mass mortalities decimated harvested clam populations along coastal ecosystems of the region, leading to prolonged shellfishery closures. More frequent and intense harmful algal blooms together with unfavorable environmental conditions driven by climate change stressors affect coastal shellfisheries, impact economic revenues, and damage the livelihood of local communities. We identify future modelling needs to reduce uncertainty in the expected effects of climate change on marine fisheries. However, the paucity of fisheries data prevents a more effective assessment of the impact of climate change on fisheries and hampers the ability of governments and communities to adapt to these changes.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 67
    Publication Date: 2022-07-13
    Description: Growing evidence indicates that the atmospheric and oceanic circulation experiences a systematic poleward shift in a warming climate. However, the complexity of the climate system, including the coupling between the ocean and the atmosphere, natural climate variability and land-sea distribution, tends to obfuscate the causal mechanism underlying the circulation shift. Here, using an idealised coupled aqua-planet model, we explore the mechanism of the shifting circulation, by isolating the contributing factors from the direct CO2 forcing, the indirect ocean surface warming, and the wind-stress feedback from the ocean dynamics. We find that, in contrast to the direct CO2 forcing, ocean surface warming, in particular an enhanced subtropical ocean warming, plays an important role in driving the circulation shift. This enhanced subtropical ocean warming emerges from the background Ekman convergence of surface anomalous heat in the absence of the ocean dynamical change. It expands the tropical warm water zone, causes a poleward shift of the mid-latitude temperature gradient, hence forces a corresponding shift in the atmospheric circulation and the associated wind pattern. The shift in wind, in turn drives a shift in the ocean circulation. Our simulations, despite being idealised, capture the main features of the observed climate changes, for example, the enhanced subtropical ocean warming, poleward shift of the patterns of near-surface wind, sea level pressure, storm tracks, precipitation and large-scale ocean circulation, implying that increase in greenhouse gas concentrations not only raises the temperature, but can also systematically shift the climate zones poleward.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 68
    Publication Date: 2022-07-13
    Description: The stratified Chilean Comau Fjord sustains a dense population of the cold-water coral (CWC) Desmophyllum dianthus in aragonite supersaturated shallow and aragonite under- saturated deep water. This provides a rare opportunity to evaluate CWC fitness trade-offs in response to physico-chemical drivers and their variability. Here, we combined year-long reciprocal transplantation experiments along natural oceanographic gradients with an in situ assessment of CWC fitness. Following transplantation, corals acclimated fast to the novel environment with no discernible difference between native and novel (i.e. cross-transplanted) corals, demonstrating high phenotypic plasticity. Surprisingly, corals exposed to lowest ara- gonite saturation (Ωarag 〈 1) and temperature (T 〈 12.0 °C), but stable environmental condi- tions, at the deep station grew fastest and expressed the fittest phenotype. We found an inverse relationship between CWC fitness and environmental variability and propose to consider the high frequency fluctuations of abiotic and biotic factors to better predict the future of CWCs in a changing ocean.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 69
    Publication Date: 2022-06-24
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Page, H. N., Bahr, K. D., Cyronak, T., Jewett, E. B., Johnson, M. D., & McCoy, S. J. Responses of benthic calcifying algae to ocean acidification differ between laboratory and field settings. Ices Journal of Marine Science, 79(1), (2022): 1–11, https://doi.org/10.1093/icesjms/fsab232.
    Description: Accurately predicting the effects of ocean and coastal acidification on marine ecosystems requires understanding how responses scale from laboratory experiments to the natural world. Using benthic calcifying macroalgae as a model system, we performed a semi-quantitative synthesis to compare directional responses between laboratory experiments and field studies. Variability in ecological, spatial, and temporal scales across studies, and the disparity in the number of responses documented in laboratory and field settings, make direct comparisons difficult. Despite these differences, some responses, including community-level measurements, were consistent across laboratory and field studies. However, there were also mismatches in the directionality of many responses with more negative acidification impacts reported in laboratory experiments. Recommendations to improve our ability to scale responses include: (i) developing novel approaches to allow measurements of the same responses in laboratory and field settings, and (ii) researching understudied calcifying benthic macroalgal species and responses. Incorporating these guidelines into research programs will yield data more suitable for robust meta-analyses and will facilitate the development of ecosystem models that incorporate proper scaling of organismal responses to in situ acidification. This, in turn, will allow for more accurate predictions of future changes in ecosystem health and function in a rapidly changing natural climate.
    Description: We would like to thank the Ocean Carbon and Biogeochemistry Program for organizing the fourth U.S. Ocean Acidification Principal Investigators meeting, which is where this synthesis was conceived. HNP was a postdoctoral research fellow at Mote Marine Laboratory. MDJ is a postdoctoral scholar at Woods Hole Oceanographic Institution. SJM is a Norma J. Lang early career fellow of the Phycological Society of America.
    Repository Name: Woods Hole Open Access Server
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  • 70
    Publication Date: 2022-06-27
    Description: © The Author(s), (2022). This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ahmed, D. A., Hudgins, E. J., Cuthbert, R. N., Kourantidou, M., Diagne, C., Haubrock, P. J., Leung, B., Liu, C., Leroy, B., Petrovskii, S., Beidas, A., & Courchamp, F. Managing biological invasions: the cost of inaction. Biological Invasions. (2022), https://doi.org/10.1007/s10530-022-02755-0.
    Description: Ecological and socioeconomic impacts from biological invasions are rapidly escalating worldwide. While effective management underpins impact mitigation, such actions are often delayed, insufficient or entirely absent. Presently, management delays emanate from a lack of monetary rationale to invest at early invasion stages, which precludes effective prevention and eradication. Here, we provide such rationale by developing a conceptual model to quantify the cost of inaction, i.e., the additional expenditure due to delayed management, under varying time delays and management efficiencies. Further, we apply the model to management and damage cost data from a relatively data-rich genus (Aedes mosquitoes). Our model demonstrates that rapid management interventions following invasion drastically minimise costs. We also identify key points in time that differentiate among scenarios of timely, delayed and severely delayed management intervention. Any management action during the severely delayed phase results in substantial losses (〉50% of the potential maximum loss). For Aedes spp., we estimate that the existing management delay of 55 years led to an additional total cost of approximately $ 4.57 billion (14% of the maximum cost), compared to a scenario with management action only seven years prior (〈 1% of the maximum cost). Moreover, we estimate that in the absence of management action, long-term losses would have accumulated to US$ 32.31 billion, or more than seven times the observed inaction cost. These results highlight the need for more timely management of invasive alien species—either pre-invasion, or as soon as possible after detection—by demonstrating how early investments rapidly reduce long-term economic impacts.
    Description: The authors acknowledge the French National Research Agency (ANR-14-CE02-0021) and the BNP-Paribas Foundation Climate Initiative for funding the InvaCost project that allowed the construction of the InvaCost database. The present work was conducted following a workshop funded by the AXA Research Fund Chair of Invasion Biology and is part of the AlienScenarios project funded by BiodivERsA and Belmont-Forum call 2018 on biodiversity scenarios. DAA is funded by the Kuwait Foundation for the Advancement of Sciences (KFAS), grant no. PR1914SM-01 and the Gulf University for Science and Technology (GUST) internal seed fund, grant no. 234597. EJH is supported by a Fonds de recherche du Québec—nature et téchnologies B3X fellowship. RNC acknowledges funding from the Alexander von Humboldt Foundation. CL was sponsored by the PRIME programme of the German Academic Exchange Service (DAAD) with funds from the German Federal Ministry of Education and Research (BMBF).
    Keywords: InvaCost ; Invasive alien species ; Logistic growth ; Socioeconomic impacts ; Prevention and biosecurity ; Long-term management
    Repository Name: Woods Hole Open Access Server
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  • 71
    Publication Date: 2022-06-22
    Description: The Riardo basin hosts groundwater exploited for the production of high quality, naturally sparkling, bottled water (e.g., Ferrarelle water), and circulating in a system constituted by highly fractured Mesozoic carbonates, overlain by more impervious volcanic rocks of the Roccamonfina complex. The two formations are locally in hydraulic connection and dislocated by deep-rooted faults. The study aimed at elucidating groundwater origin and circulation, using isotopic tracers (δ18O, δ2H, δ11B and 87Sr/86Sr) coupled to groundwater dating (Tritium, CFCs and SF6). Besides recharge by local precipitation over the Riardo hydrogeological basin, stable isotope ratios in water indicated an extra-basin recharge, likely from the elevated surrounding carbonate reliefs (e.g., Maggiore and Matese Mts.). The mineralization process, promoted by the deep CO2 flux, controls the B and Sr contents. However, their isotopic ratios did not allow discriminating between circulation in the volcanic and in the carbonate aquifers, as in the latter the isotopic composition differed from the original marine signature. Groundwater model ages ranged from ~ 30 years for the volcanic endmember to 〉 70 years for the deep, mineralized end-member, with longer circuits recharged at higher elevations. Overall, the results of this study were particularly relevant for mineral water exploitation. A recharge from outside the hydrogeological basin could be evidenced, especially for the more mineralized and valuable groundwater, and an active recent recharge was detected for the whole Riardo system. Both findings will contribute to the refinement of the hydrogeological model and water budget, and to a sustainable development of the resource.
    Description: Published
    Description: 1–28
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Aquifer recharge; Fractured aquifers; Groundwater dating; Hydrogeological circuits; Stable isotopes
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 72
    Publication Date: 2022-06-22
    Description: In this paper we simulate the earthquake that hit the city of L'Aquila on the 6th of April 2009 using SPEED (SPectral Elements in Elastodynamics with Discontinuous Galerkin), an open-source code able to simulate the propagation of seismic waves in complex three-dimensional (3D) domains. Our model includes an accurate 3D recon- struction of the Quaternary deposits, according to the most up-to-date data obtained from the Microzonation studies in Central Italy and a detailed model of the topography incorporated using a newly developed tool (May et al. 2021). The sensitivity of our results with respect to dfferent kinematic seismic sources is inves- tigated. The results obtained are in good agreement with the recordings at the available seismic stations at epicentral distances within a range of 20km. Finally, a blind source prediction scenario application shows a reasonably good agreement between simulations and recordings can be obtained by simulating stochastic rupture realizations with basic input data. These results, although limited to nine simulated scenarios, demonstrate that it is possible to obtain a satisfactory reconstruction of a ground shaking scenario employing a stochastic source constrained on a limited amount of ex-ante information. A similar approach can be used to model future and past earthquakes for which little or no information is typically available, with potential relevant implications for seismic risk assessment.
    Description: Published
    Description: 29–49
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 73
    Publication Date: 2022-06-22
    Description: El Niño-Southern Oscillation (ENSO) is known to affect the Northern Hemisphere tropospheric circulation in late-winter (January–March), but whether El Niño and La Niña lead to symmetric impacts and with the same underlying dynamics remains unclear, particularly in the North Atlantic. Three state-of-the-art atmospheric models forced by symmetric anomalous sea surface temperature (SST) patterns, mimicking strong ENSO events, are used to robustly diagnose symmetries and asymmetries in the extra-tropical ENSO response. Asymmetries arise in the sea-level pressure (SLP) response over the North Pacific and North Atlantic, as the response to La Niña tends to be weaker and shifted westward with respect to that of El Niño. The difference in amplitude can be traced back to the distinct energy available for the two ENSO phases associated with the non-linear diabatic heating response to the total SST field. The longitudinal shift is embedded into the large-scale Rossby wave train triggered from the tropical Pacific, as its anomalies in the upper troposphere show a similar westward displacement in La Niña compared to El Niño. To fully explain this shift, the response in tropical convection and the related anomalous upper-level divergence have to be considered together with the climatological vorticity gradient of the subtropical jet, i.e. diagnosing the tropical Rossby wave source. In the North Atlantic, the ENSO-forced SLP signal is a well-known dipole between middle and high latitudes, different from the North Atlantic Oscillation, whose asymmetry is not indicative of distinct mechanisms driving the teleconnection for El Niño and La Niña.
    Description: Published
    Description: 1965–1986
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 74
    Publication Date: 2022-06-23
    Description: The ionospheric equivalent slab thickness (τ ) is a parameter characterizing both the distribution of the plasma in the ionosphere and the shape of the corresponding vertical electron density profile. It is calculated as the ratio of the vertical total electron content (vTEC) to the ionospheric F2-layer electron density maximum (NmF2). Since its definition dated back in the 60s, a lot of information on the behavior of τ for different helio-geophysical conditions has been cumulated and the connection with several plasma properties has been also demonstrated. The beginning of the Global Positioning System (GPS) era in the 90s had a strong effect on the studies about τ because GPS signals allow to obtain the vTEC up to about 20000 km of altitude. Recently, τ has also found application in many data-assimilation methodologies, especially for the improvement of empirical ionospheric models based on near real-time data. All of these topics are reviewed and discussed in this paper based on the literature published in the last sixty years. Moreover, to highlight and summarize the main global climatological features of τ, in this work we selected thirty-two ionospheric stations globally distributed and co-located with ground-based Global Navigation Satellite System (GNSS) receivers, for the last two solar cycles. This allowed to collect a dataset of NmF2 and vTEC that represents the largest and most complete ever analyzed for studies concerning τ , which gave the chance to deeply investigate its spatial, diurnal, seasonal, and solar activity variations. The corresponding results are presented and discussed in the light of the existing literature.
    Description: Published
    Description: 37
    Description: 2A. Fisica dell'alta atmosfera
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 75
    Publication Date: 2022-06-22
    Description: A theoretical pattern for Fe and As co-precipitation was tested directly in a groundwater natural system. Several monitoring wells were sampled to identify the different endmembers that govern the hydrodynamics of the Ferrarelle Groundwater System in the Riardo Plain (Southern Italy). In agreement with recent investigations, we found a mix of a deep and a shallow component in different proportions, resulting in a specific chemical composition of groundwater in each well depending on the percentages of each component. The shallow component was characterized by EC ~ 430 µS/cm, Eh ~ 300 mV, Fe ~ 0.06 µmol/L and As ~ 0.01-0.12 µmol/L, while the deep component was characterized by EC ~ 3400 µS/cm, Eh ~ 170 mV, Fe ~ 140 µmol/L and As ~ 0.59 µmol/L. A general attenuation of As and Fe concentration that was not due to a simple dilution effect was observed in the mixing process. The oxidation of Fe(II) to Fe(III) produces solid precipitates which adsorb As from solution and then co-precipitate. The reactions pattern of Fe(II) oxidation and As adsorption gave a linear function between [As] and [Fe], where the angular coefficient depends on the [O2]/[H+] ratio. Chemical data obtained from our samples showed a very good agreement with this theoretical relationship. The investigated geochemical dynamics represented a natural process of attenuation of Fe and As, two undesirable elements that usually affect groundwater quality in volcanic aquifers in central-southern Italy, which are exploited to supply drinking water.
    Description: Published
    Description: pages 2065–2082
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Fe and As hydrogeochemistry; Natural mineral water; Natural self-removal dynamics; Oxohydroxides adsorption; Water treatment
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 76
    Publication Date: 2022-06-22
    Description: The predictability of the Northern Hemisphere stratosphere and its underlying dynamics are investigated in five state-of-the-art seasonal prediction systems from the Copernicus Climate Change Service (C3S) multi-model database. Special attention is devoted to the connection between the stratospheric polar vortex (SPV) and lower-stratosphere wave activity (LSWA). We find that in winter (December to February) dynamical forecasts initialised on the first of November are considerably more skilful than empirical forecasts based on October anomalies. Moreover, the coupling of the SPV with mid-latitude LSWA (i.e., meridional eddy heat flux) is generally well reproduced by the forecast systems, allowing for the identification of a robust link between the predictability of wave activity above the tropopause and the SPV skill. Our results highlight the importance of November-to-February LSWA, in particular in the Eurasian sector, for forecasts of the winter stratosphere. Finally, the role of potential sources of seasonal stratospheric predictability is considered: we find that the C3S multi-model overestimates the stratospheric response to El Niño–Southern Oscillation (ENSO) and underestimates the influence of the Quasi–Biennial Oscillation (QBO).
    Description: Published
    Description: 2109–2130
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 77
    Publication Date: 2022-06-22
    Description: An integrated approach using chemical and microbial indicators has been tested in two different sites of the Campania Plain (Southern Italy) with different land use covering and different hydrogeological features in order: (1) to define the water-rock interaction processes, (2) to differentiate sources of pollution in a detailed way (3) to evaluate the degree of water quality in the studied alluvial aquifer and (4) to identify the most worrying elements for human's health. Groundwater have showed a HCO3-Ca signature for both investigated sites, and a progressive enrichment in alkali ions has been highlighted moving from the boundary of the plain toward the coastal areas, due to groundwater interaction with volcanic rocks along the flow path. The application of the Factor Analysis allowed to identify different sources of pollution, which were attributed to (a) leaks in the sewer system for the Agro-Aversano Area and also the spreading of manure as fertilizers in agricultural activities for the Caiazzo Plain. Furthermore, it has been highlighted that the use of major elements, trace elements and microbiological indicators, allows to accurately differentiate contamination processes in progress. In fact, from the results of the Factor Analysis applied in the Agro-Aversano area, no significant statistically relationships between major elements and microbiological indicators of fecal contamination were highlighted, unlike the Caiazzo plain where statistically significant correlations have been found between major and trace elements and microbiological indicators. The use of a Groundwater Quality Index has shown general poor water quality for the majority of analyzed samples due to the high amount of Nitrate and Fecal indicators. The use of a Health Risk Assessment highlighted that Nitrate coupled with Fluoride represent the most important concern for human health compared to the all investigated parameters in both sites.
    Description: Published
    Description: 2083–2099
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: 7SR AMBIENTE – Servizi e ricerca per la società
    Description: JCR Journal
    Keywords: Alluvial aquifer; Factor analysis; Fecal pollution; GQI; HRA; Trace elements
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 78
    Publication Date: 2022-06-22
    Description: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2022. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Description: On 29 December 2020, a shallow earthquake of magnitude Mw 6.4 struck northern Croatia, near the town of Petrinja, more than 24 hours after a strong foreshock (Ml 5). We formed a reconnaissance team of European geologists and engineers, from Croatia, Slovenia, France, Italy and Greece, rapidly deployed in the field to map the evidence of coseismic environmental effects. In the epicentral area, we recognized surface deformation, such as tectonic breaks along the earthquake source at the surface, liquefaction features (scattered in the fluvial plains of Kupa, Glina and Sava rivers), and slope failures, both caused by strong motion. Thanks to this concerted, collective and meticulous work, we were able to document and map a clear and unambiguous coseismic surface rupture associated with the main shock. The surface rupture appears discontinuous, consisting of multi-kilometer en échelon right stepping sections, along a NW-SE striking fault that we call the Petrinja-Pokupsko Fault (PPKF). The observed deformation features, in terms of kinematics and trace alignments, are consistent with slip on a right lateral fault, in agreement with the focal solution of the main shock. We found mole tracks, displacement on faults affecting natural features (e. g. drainage channels), scarplets, and more frequently breaks of anthropogenic markers (roads, fences). The surface rupture is observed over a length of ∼13 km from end-to-end, with a maximum displacement of 38 cm, and an average displacement of ∼10 cm. Moreover, the liquefaction extends over an area of nearly 600 km² around the epicenter. Typology of liquefaction features include sand blows, lateral spreading phenomenon along the road and river embankments, as well as sand ejecta of different grain size and matrix. Development of large and long fissures along the fluvial landforms, current or ancient, with massive ejections of sediments is pervasive. These features are sometimes accompanied by small horizontal displacements. Finally, the environmental effects of the earthquake appear to be reasonably consistent with the usual scaling relationships, in particular the surface faulting. This rupture of the ground occurred on or near traces of a fault that shows clear evidence of Quaternary activity. Further and detailed studies will be carried out to characterize this source and related faults in terms of future large earthquakes potential, for their integration into seismic hazard models.
    Description: Published
    Description: 1394–1418
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
    Keywords: Seismicity and tectonics ; Earthquake hazards ; Coseismic effects ; M6.4 Petrinja earthquake (Croatia)
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 79
    Publication Date: 2022-06-22
    Description: El Niño Southern Oscillation (ENSO) represents the major driver of interannual climate variability at global scale. Observational and model-based studies have fostered a long-standing debate on the shape and intensity of the ENSO influence over the Euro-Mediterranean sector. Indeed, the detection of this signal is strongly affected by the large internal variability that characterizes the atmospheric circulation in the North Atlantic–European (NAE) region. This study explores if and how the low-frequency variability of North Pacific sea surface temperature (SST) may impact the El Niño-NAE teleconnection in late winter, which consists of a dipolar pattern between middle and high latitudes. A set of idealized atmosphere-only experiments, prescribing different phases of the anomalous SST linked to the Pacific Decadal Oscillation (PDO) superimposed onto an El Niño-like forcing in the tropical Pacific, has been performed in a multi-model framework, in order to assess the potential modulation of the positive ENSO signal. The modelling results suggest, in agreement with observational estimates, that the PDO negative phase (PDO−) may enhance the amplitude of the El Niño-NAE teleconnection, while the dynamics involved appear to be unaltered. On the other hand, the modulating role of the PDO positive phase (PDO+) is not reliable across models. This finding is consistent with the atmospheric response to the PDO itself, which is robust and statistically significant only for PDO−. Its modulation seems to rely on the enhanced meridional SST gradient and the related turbulent heat-flux released along the Kuroshio–Oyashio extension. PDO− weakens the North Pacific jet, whereby favoring more poleward propagation of wave activity, strengthening the El Niño-forced Rossby wave-train. These results imply that there might be conditional predictability for the interannual Euro-Mediterranean climate variability depending on the background state.
    Description: Published
    Description: 2009–2029
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: 01.01. Atmosphere
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 80
    Publication Date: 2022-06-22
    Description: Land surface and atmosphere are interlocked by the hydrological and energy cycles and the effects of soil water-air coupling can modulate near-surface temperatures. In this work, three paired experiments were designed to evaluate impacts of different soil moisture initial and boundary conditions on summer temperatures in the Mediterranean transitional climate regime region. In this area, evapotranspiration is not limited by solar radiation, rather by soil moisture, which therefore controls the boundary layer variability. Extremely dry, extremely wet and averagely humid ground conditions are imposed to two global climate models at the beginning of the warm and dry season. Then, sensitivity experiments, where atmosphere is alternatively interactive with and forced by land surface, are launched. The initial soil state largely affects summer near-surface temperatures: dry soils contribute to warm the lower atmosphere and exacerbate heat extremes, while wet terrains suppress thermal peaks, and both effects last for several months. Land-atmosphere coupling proves to be a fundamental ingredient to modulate the boundary layer state, through the partition between latent and sensible heat fluxes. In the coupled runs, early season heat waves are sustained by interactive dry soils, which respond to hot weather conditions with increased evaporative demand, resulting in longer-lasting extreme temperatures. On the other hand, when wet conditions are prescribed across the season, the occurrence of hot days is suppressed. The land surface prescribed by climatological precipitation forcing causes a temperature drop throughout the months, due to sustained evaporation of surface soil water. Results have implications for seasonal forecasts on both rain-fed and irrigated continental regions in transitional climate zones.
    Description: Published
    Description: 1943–1963
    Description: 4A. Oceanografia e clima
    Description: JCR Journal
    Keywords: 01.01. Atmosphere ; 03.02. Hydrology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 81
    Publication Date: 2022-06-22
    Description: Geothermal areas of Greece are located in regions affected by recent volcanism and in continental basins characterised by elevated heat flow. Many of them are found along the coast and thus, water is often saline due to marine intrusion. In the current study, we present about 300 unpublished and literature data from thermal and cold mineral waters collected along Greece. Samples were analysed for major ions, Li, SiO2 and isotopes in water. Measured temperatures range from 6.5 to 98°C, pH from 1.96 to 11.98, whilst Total Dissolved Solutes (TDS) from 0.22 to 51 g/L. Waters were subdivided into four main groups: i) thermal; ii) cold; iii) acidic (pH 〈5) and iv) hyperalkaline (pH 〉11). On statistical basis, the thermal waters were subdivided into subgroups according to both their temperature [warm (〈29 °C), hypothermal (29-48 °C), thermal (48-75 °C) and hyperthermal (〉75 °C)] and TDS [low salinity (〈4 g/L), brackish (4-30 g/L) and saline (〉30 g/L)]. Cold waters were subdivided basing on their pCO2 [low (〈0.05 atm), medium (0.05-0.85 atm) and high (〉0.85 atm)]. δ18O-H2O ranges from -12.7 to +2.7 ‰ vs. SMOW, while δ2H-H2O from -91 to +12 ‰ vs. SMOW being generally comprised between the Global Meteoric Water Line and the East Mediterranean Meteoric Water Line. Positive δ18O shifts with respect to the former are mostly related to mixing with seawater, while only for a few samples they point to high-temperature water-rock interaction processes. Only a few thermal waters gave reliable geothermometric estimates, suggesting reservoir temperatures between 80 and 260 °C.
    Description: Published
    Description: 2111–2133
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: JCR Journal
    Keywords: Hydrogeochemistry ; Stable isotopes ; Carbon dioxide ; Geothermometry ; 03. Hydrosphere ; 03.04. Chemical and biological
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  • 82
    Publication Date: 2022-09-13
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Huntley, N., Brandt, M., Becker, C., Miller, C., Meiling, S., Correa, A., Holstein, D., Muller, E., Mydlarz, L., Smith, T., & Apprill, A. Experimental transmission of Stony Coral Tissue Loss Disease results in differential microbial responses within coral mucus and tissue. ISME Communications, 2(1), (2022): 46, https://doi.org/10.1038/s43705-022-00126-3.
    Description: Stony coral tissue loss disease (SCTLD) is a widespread and deadly disease that affects nearly half of Caribbean coral species. To understand the microbial community response to this disease, we performed a disease transmission experiment on US Virgin Island (USVI) corals, exposing six species of coral with varying susceptibility to SCTLD. The microbial community of the surface mucus and tissue layers were examined separately using a small subunit ribosomal RNA gene-based sequencing approach, and data were analyzed to identify microbial community shifts following disease acquisition, potential causative pathogens, as well as compare microbiota composition to field-based corals from the USVI and Florida outbreaks. While all species displayed similar microbiome composition with disease acquisition, microbiome similarity patterns differed by both species and mucus or tissue microhabitat. Further, disease exposed but not lesioned corals harbored a mucus microbial community similar to those showing disease signs, suggesting that mucus may serve as an early warning detection for the onset of SCTLD. Like other SCTLD studies in Florida, Rhodobacteraceae, Arcobacteraceae, Desulfovibrionaceae, Peptostreptococcaceae, Fusibacter, Marinifilaceae, and Vibrionaceae dominated diseased corals. This study demonstrates the differential response of the mucus and tissue microorganisms to SCTLD and suggests that mucus microorganisms may be diagnostic for early disease exposure.
    Description: This work was funded by an International Coral Reef Society student grant to N.H., National Science Foundation (NSF) VI EPSCoR 0814417 and 1946412 and NSF (Biological Oceanography) award numbers 1928753 to MEB and TBS, 1928609 to AMSC, 1928817 to EMM, 19228771 to LDM, 1927277 to DMH as well as 1928761 and 1938112 to AA, NSF EEID award number 2109622 to MEB, AA, LDM, and AMSC, and a NOAA OAR Cooperative Institutes award to AA (#NA19OAR4320074). Samples were collected under permit #DFW19057U authorized by the Department of Planning and Natural Resources Coastal Zone Management.
    Repository Name: Woods Hole Open Access Server
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  • 83
    Publication Date: 2022-08-16
    Description: The El Niño/Southern Oscillation (ENSO), the dominant driver of year-to-year climate variability in the equatorial Pacific Ocean, impacts climate pattern across the globe. However, the response of the ENSO system to past and potential future temperature increases is not fully understood. Here we investigate ENSO variability in the warmer climate of the mid-Pliocene (~3.0–3.3 Ma), when surface temperatures were ~2–3 °C above modern values, in a large ensemble of climate models—the Pliocene Model Intercomparison Project. We show that the ensemble consistently suggests a weakening of ENSO variability, with a mean reduction of 25% (±16%). We further show that shifts in the equatorial Pacific mean state cannot fully explain these changes. Instead, ENSO was suppressed by a series of off-equatorial processes triggered by a northward displacement of the Pacific intertropical convergence zone: weakened convective feedback and intensified Southern Hemisphere circulation, which inhibit various processes that initiate ENSO. The connection between the climatological intertropical convergence zone position and ENSO we find in the past is expected to operate in our warming world with important ramifications for ENSO variability.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 84
    Publication Date: 2022-09-01
    Description: In the last years the scientific literature has been enriched with new models of the Moho depth in the Antarctica Continent derived by the seismic reflection technique and refraction profiles, receiver functions and seismic surface waves, but also by gravimetric observations over the continent. In particular, the gravity satellite missions of the last two decades have provided data in this remote region of the Earth and have allowed the investigation of the crust properties. Meanwhile, other important contributions in this direction has been given by the fourth International Polar Year (IPY, 2007–2008) which started seismographic and geodetic networks of unprecedented duration and scale, including airborne gravimetry over largely unexplored Antarctic frontiers. In this study, a new model for the Antarctica Moho depths is proposed. This new estimation is based on no satellite gravity measures, thanks to the availability of the gravity database ANTGG2015, that collects gravity data from ground-base, airborne and shipborne campaigns. In this new estimate of the Moho depths the contribution of the gravity measures has been maximized reducing any correction of the gravity measures and avoiding constraints of the solution to seismological observations and to geological evidence. With this approach a pure gravimetric solution has been determined. The model obtained is pretty in agreement with other Moho models and thanks to the use of independent data it can be exploited also for cross-validating different Moho depths solutions.
    Description: Published
    Description: 1404–1420
    Description: 1T. Struttura della Terra
    Description: JCR Journal
    Keywords: Antarctica ; Moho ; Gravity inversion ; Collocation ; ANTGG2015
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 85
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    Oxford University Press
    In:  EPIC3Geophysical Journal International, Oxford University Press, 231, pp. 1959-1981
    Publication Date: 2022-09-16
    Description: Seismic reflection and refraction data were collected in 2007 and 2012 to reveal the crustal fabric on a single long composite profile offshore Prydz Bay, East Antarctica. A P-wave velocity model provides insights on the crustal fabric, and a gravity-constrained density model is used to describe the crustal and mantle structure. The models show that a 230-km- wide continent–ocean transition separates stretched continental from oceanic crust along our profile. While the oceanic crust close to the continent–ocean boundary is just 3.5–5 km thick, its thickness increases northwards towards the Southern Kerguelen Plateau to 12 km. This change is accompanied by thickening of a lower crustal layer with high P-wave velocities of up to 7.5 km s–1, marking intrusive rocks emplaced beneath the mid-ocean ridge under increasing influence of the Kerguelen plume. Joint interpretations of our crustal model, seismic reflection data and magnetic data sets constrain the age and extent of oceanic crust in the research area. Oceanic crust is shown to continue to around 160 km farther south than has been interpreted in previous data, with profound implications for plate kinematic models of the region. Finally, by combining our findings with a regional magnetic data compilation and regional seismic reflection data we propose a larger extent of oceanic crust in the Enderby Basin than previously known.
    Repository Name: EPIC Alfred Wegener Institut
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  • 86
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zakem, E. J., Mahadevan, A., Lauderdale, J. M., & Follows, M. J. Stable aerobic and anaerobic coexistence in anoxic marine zones. ISME Journal, 14, (2019): 288–301, doi: 10.1038/s41396-019-0523-8.
    Description: Mechanistic description of the transition from aerobic to anaerobic metabolism is necessary for diagnostic and predictive modeling of fixed nitrogen loss in anoxic marine zones (AMZs). In a metabolic model where diverse oxygen- and nitrogen-cycling microbial metabolisms are described by underlying redox chemical reactions, we predict a transition from strictly aerobic to predominantly anaerobic regimes as the outcome of ecological interactions along an oxygen gradient, obviating the need for prescribed critical oxygen concentrations. Competing aerobic and anaerobic metabolisms can coexist in anoxic conditions whether these metabolisms represent obligate or facultative populations. In the coexistence regime, relative rates of aerobic and anaerobic activity are determined by the ratio of oxygen to electron donor supply. The model simulates key characteristics of AMZs, such as the accumulation of nitrite and the sustainability of anammox at higher oxygen concentrations than denitrification, and articulates how microbial biomass concentrations relate to associated water column transformation rates as a function of redox stoichiometry and energetics. Incorporating the metabolic model into an idealized two-dimensional ocean circulation results in a simulated AMZ, in which a secondary chlorophyll maximum emerges from oxygen-limited grazing, and where vertical mixing and dispersal in the oxycline also contribute to metabolic co-occurrence. The modeling approach is mechanistic yet computationally economical and suitable for global change applications.
    Description: We are grateful for the thorough and thoughtful comments of two anonymous reviewers. We also thank Andrew Babbin for helpful comments. EJZ was supported by the Simons Foundation (Postdoctoral Fellowship in Marine Microbial Ecology). AM was supported by the Office of Naval Research (ONR #N000-14-15-1-2555). JML was supported by U.S. National Science Foundation (NSF #OCE-1259388). MJF was supported by the Gordon and Betty Moore Foundation (GBMF #3778) and the Simons Foundation: the Simons Collaboration on Ocean Processes and Ecology (SCOPE #329108) and the Simons Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems (CBIOMES #549931).
    Repository Name: Woods Hole Open Access Server
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  • 87
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lasek-Nesselquist, E., & Johnson, M. D. A phylogenomic approach to clarifying the relationship of Mesodinium within the Ciliophora: a case study in the complexity of mixed-species transcriptome analyses. Genome Biology and Evolution, 11(11), (2019): 3218–3232, doi:10.1093/gbe/evz233.
    Description: Recent high-throughput sequencing endeavors have yielded multigene/protein phylogenies that confidently resolve several inter- and intra-class relationships within the phylum Ciliophora. We leverage the massive sequencing efforts from the Marine Microbial Eukaryote Transcriptome Sequencing Project, other SRA submissions, and available genome data with our own sequencing efforts to determine the phylogenetic position of Mesodinium and to generate the most taxonomically rich phylogenomic ciliate tree to date. Regardless of the data mining strategy, the multiprotein data set, or the molecular models of evolution employed, we consistently recovered the same well-supported relationships among ciliate classes, confirming many of the higher-level relationships previously identified. Mesodinium always formed a monophyletic group with members of the Litostomatea, with mixotrophic species of Mesodinium—M. rubrum, M. major, and M. chamaeleon—being more closely related to each other than to the heterotrophic member, M. pulex. The well-supported position of Mesodinium as sister to other litostomes contrasts with previous molecular analyses including those from phylogenomic studies that exploited the same transcriptomic databases. These topological discrepancies illustrate the need for caution when mining mixed-species transcriptomes and indicate that identifying ciliate sequences among prey contamination—particularly for Mesodinium species where expression from stolen prey nuclei appears to dominate—requires thorough and iterative vetting with phylogenies that incorporate sequences from a large outgroup of prey.
    Description: We thank David Beaudoin and Holly V. Moeller for their assistance in collecting cells and extracting RNA. We thank the Josephine Bay Paul Center for Comparative Molecular Biology and Evolution at the Marine Biological Laboratory for the generous use of their servers. This work was supported in part by a National Science Foundation grant to both authors (IOS 1354773).
    Keywords: Mesodinium ; Litostomatea ; ciliate phylogenomics ; mixed-species transcriptomes ; sequence contamination
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  • 88
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ponnudurai, R., Heiden, S. E., Sayavedra, L., Hinzke, T., Kleiner, M., Hentschker, C., Felbeck, H., Sievert, S. M., Schlüter, R., Becher, D., Schweder, T., & Markert, S. Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions. ISME Journal, 14, (2019): 649–656, doi: 10.1038/s41396-019-0517-6.
    Description: Deep-sea Bathymodiolus mussels and their chemoautotrophic symbionts are well-studied representatives of mutualistic host–microbe associations. However, how host–symbiont interactions vary on the molecular level between related host and symbiont species remains unclear. Therefore, we compared the host and symbiont metaproteomes of Pacific B. thermophilus, hosting a thiotrophic symbiont, and Atlantic B. azoricus, containing two symbionts, a thiotroph and a methanotroph. We identified common strategies of metabolic support between hosts and symbionts, such as the oxidation of sulfide by the host, which provides a thiosulfate reservoir for the thiotrophic symbionts, and a cycling mechanism that could supply the host with symbiont-derived amino acids. However, expression levels of these processes differed substantially between both symbioses. Backed up by genomic comparisons, our results furthermore revealed an exceptionally large repertoire of attachment-related proteins in the B. thermophilus symbiont. These findings imply that host–microbe interactions can be quite variable, even between closely related systems.
    Description: Thanks to captain, crew, and pilots of the research vessels Atlantis (ROV Jason cruise AT26–10 in 2014) and Meteor (cruise M82–3 in 2010). We thank Jana Matulla, Sebastian Grund, and Annette Meuche for excellent technical assistance during sample preparation, MS measurements in the Orbitrap Classic, and TEM imaging preparation, respectively. We appreciate Nikolaus Leisch’s help with TEM image interpretation, Inna Sokolova’s advice on bivalve physiology, and Marie Zühlke’s support during manuscript revision. RP was supported by the EU-funded Marie Curie Initial Training Network ‘Symbiomics’ (project no. 264774) and by a fellowship of the Institute of Marine Biotechnology e.V. TH was supported by the German Research Foundation DFG (grant MA 6346/2–1 to SM). The Atlantis cruise was funded by a grant of the US National Science Foundation’s Dimensions of Biodiversity program to SMS (OCE-1136727).
    Repository Name: Woods Hole Open Access Server
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  • 89
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Miller, C. A., Holm, H. C., Horstmann, L., George, J. C., Fredricks, H. F., Van Mooy, B. A. S., & Apprill, A. Coordinated transformation of the gut microbiome and lipidome of bowhead whales provides novel insights into digestion. ISME Journal, 14, (2019): 688-701, doi: 10.1038/s41396-019-0549-y.
    Description: Whale digestion plays an integral role in many ocean ecosystems. By digesting enormous quantities of lipid-rich prey, whales support their energy intensive lifestyle, but also excrete nutrients important to ocean biogeochemical cycles. Nevertheless, whale digestion is poorly understood. Gastrointestinal microorganisms play a significant role in vertebrate digestion, but few studies have examined them in whales. To investigate digestion of lipids, and the potential contribution of microbes to lipid digestion in whales, we characterized lipid composition (lipidomes) and bacterial communities (microbiotas) in 126 digesta samples collected throughout the gastrointestinal tracts of 38 bowhead whales (Balaena mysticetus) harvested by Alaskan Eskimos. Lipidomes and microbiotas were strongly correlated throughout the gastrointestinal tract. Lipidomes and microbiotas were most variable in the small intestine and most similar in the large intestine, where microbiota richness was greatest. Our results suggest digestion of wax esters, the primary lipids in B. mysticetus prey representing more than 80% of total dietary lipids, occurred in the mid- to distal small intestine and was correlated with specific microorganisms. Because wax esters are difficult to digest by other marine vertebrates and constitute a large reservoir of carbon in the ocean, our results further elucidate the essential roles that whales and their gastrointestinal microbiotas play in the biogeochemical cycling of carbon and nutrients in high-latitude seas.
    Description: Devonshire Foundation (to CAM), Marine Mammal Center, Woods Hole Oceanographic Institution (WHOI; to CAM), WHOI Ocean Life Institute (to AA and CAM), Dalio Foundation’s Dalio Ocean Initiative (now ‘OceanX’) (to AA), National Science Foundation (OCE-1756254 and OPP-1543328 to BASVM). Samples were collected under Department of Commerce National Oceanic and Atmospheric Administration National Marine Fisheries Service permit numbers 17350-00, 17350-01, and 17350-02 to North Slope Borough Department of Wildlife Management.
    Repository Name: Woods Hole Open Access Server
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  • 90
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Xu, X., Li, G., Li, C., Zhang, J., Wang, Q., Simmons, D. K., Chen, X., Wijesena, N., Zhu, W., Wang, Z., Wang, Z., Ju, B., Ci, W., Lu, X., Yu, D., Wang, Q., Aluru, N., Oliveri, P., Zhang, Y. E., Martindale, M. Q., & Liu, J. Evolutionary transition between invertebrates and vertebrates via methylation reprogramming in embryogenesis. National Science Review, 6(5), (2019):993-1003, doi:10.1093/nsr/nwz064.
    Description: Major evolutionary transitions are enigmas, and the most notable enigma is between invertebrates and vertebrates, with numerous spectacular innovations. To search for the molecular connections involved, we asked whether global epigenetic changes may offer a clue by surveying the inheritance and reprogramming of parental DNA methylation across metazoans. We focused on gametes and early embryos, where the methylomes are known to evolve divergently between fish and mammals. Here, we find that methylome reprogramming during embryogenesis occurs neither in pre-bilaterians such as cnidarians nor in protostomes such as insects, but clearly presents in deuterostomes such as echinoderms and invertebrate chordates, and then becomes more evident in vertebrates. Functional association analysis suggests that DNA methylation reprogramming is associated with development, reproduction and adaptive immunity for vertebrates, but not for invertebrates. Interestingly, the single HOX cluster of invertebrates maintains unmethylated status in all stages examined. In contrast, the multiple HOX clusters show dramatic dynamics of DNA methylation during vertebrate embryogenesis. Notably, the methylation dynamics of HOX clusters are associated with their spatiotemporal expression in mammals. Our study reveals that DNA methylation reprogramming has evolved dramatically during animal evolution, especially after the evolutionary transitions from invertebrates to vertebrates, and then to mammals.
    Description: This work was supported by the National Key Research and Development Program of China (2018YFC1003303), the Strategic Priority Research Program of the CAS (XDB13040200), the National Natural Science Foundation of China (91519306, 31425015), the Youth Innovation Promotion Association of the CAS and the Key Research Program of Frontier Sciences, CAS (QYZDY-SSW-SMC016).
    Keywords: DNA methylation ; evolution ; development ; reprogramming
    Repository Name: Woods Hole Open Access Server
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  • 91
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Vallecillo-Viejo, I. C., Liscovitch-Brauer, N., Diaz Quiroz, J. F., Montiel-Gonzalez, Maria F., Nemes, Sonya E., Rangan, K. J., Levinson, S. R., Eisenberg, E., & Rosenthal, J. J. C. Spatially regulated editing of genetic information within a neuron. Nucleic Acids Research, (2020): gkaa172, doi: 10.1093/nar/gkaa172.
    Description: In eukaryotic cells, with the exception of the specialized genomes of mitochondria and plastids, all genetic information is sequestered within the nucleus. This arrangement imposes constraints on how the information can be tailored for different cellular regions, particularly in cells with complex morphologies like neurons. Although messenger RNAs (mRNAs), and the proteins that they encode, can be differentially sorted between cellular regions, the information itself does not change. RNA editing by adenosine deamination can alter the genome’s blueprint by recoding mRNAs; however, this process too is thought to be restricted to the nucleus. In this work, we show that ADAR2 (adenosine deaminase that acts on RNA), an RNA editing enzyme, is expressed outside of the nucleus in squid neurons. Furthermore, purified axoplasm exhibits adenosine-to-inosine activity and can specifically edit adenosines in a known substrate. Finally, a transcriptome-wide analysis of RNA editing reveals that tens of thousands of editing sites (〉70% of all sites) are edited more extensively in the squid giant axon than in its cell bodies. These results indicate that within a neuron RNA editing can recode genetic information in a region-specific manner.
    Description: National Science Foundation (NSF) [IOS1557748 to J.R.]; United States–Israel Binational Science Foundation [BSF2013094 to J.R. and E.E.]; The Grass Foundation grant in support of the Doryteuthis pealeii Genome Project, and a gift by Mr. Edward Owens. Funding for open access charge: United States–Israel Binational Science Foundation [BSF2013094].
    Repository Name: Woods Hole Open Access Server
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  • 92
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gazitua, M. C., Vik, D. R., Roux, S., Gregory, A. C., Bolduc, B., Widner, B., Mulholland, M. R., Hallam, S. J., Ulloa, O., & Sullivan, M. B. Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters. Isme Journal, (2020), doi:10.1038/s41396-020-00825-6.
    Description: Viruses play an important role in the ecology and biogeochemistry of marine ecosystems. Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during infection by expressing auxiliary metabolic genes (AMGs) involved in photosynthesis, central carbon metabolism, and nutrient cycling. While previous studies have focused on AMG diversity in the sunlit and dark ocean, less is known about the role of viruses in shaping metabolic networks along redox gradients associated with marine oxygen minimum zones (OMZs). Here, we analyzed relatively quantitative viral metagenomic datasets that profiled the oxygen gradient across Eastern Tropical South Pacific (ETSP) OMZ waters, assessing whether OMZ viruses might impact nitrogen (N) cycling via AMGs. Identified viral genomes encoded six N-cycle AMGs associated with denitrification, nitrification, assimilatory nitrate reduction, and nitrite transport. The majority of these AMGs (80%) were identified in T4-like Myoviridae phages, predicted to infect Cyanobacteria and Proteobacteria, or in unclassified archaeal viruses predicted to infect Thaumarchaeota. Four AMGs were exclusive to anoxic waters and had distributions that paralleled homologous microbial genes. Together, these findings suggest viruses modulate N-cycling processes within the ETSP OMZ and may contribute to nitrogen loss throughout the global oceans thus providing a baseline for their inclusion in the ecosystem and geochemical models.
    Description: We thank Sullivan Lab members and Heather Maughan for comments on the paper, Bess Ward for her contribution in the N-cycle context of our story, Kurt Hanselmann for his assistance in the calculations of the Gibbs-free energies, and the scientific party and crew of the R/V Atlantis (grant OCE-1356056 to MRM) for the sampling opportunity and support at sea. This work was funded in part by awards from the Agouron Institute to OU and MBS, a Gordon and Betty Moore Foundation Investigator Award (#3790) and NSF Biological Oceanography Awards (#1536989 and #1829831) to MBS, and the Millennium Science Initiative (grant ICN12_019-IMO) to OU. The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231.
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  • 93
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Babbin, A. R., Tamasi, T., Dumit, D., Weber, L., Rodríguez, M. V. I., Schwartz, S. L., Armenteros, M., Wankel, S. D., & Apprill, A. Discovery and quantification of anaerobic nitrogen metabolisms among oxygenated tropical Cuban stony corals. ISME Journal, (2020), doi:10.1038/s41396-020-00845-2.
    Description: Coral reef health depends on an intricate relationship among the coral animal, photosynthetic algae, and a complex microbial community. The holobiont can impact the nutrient balance of their hosts amid an otherwise oligotrophic environment, including by cycling physiologically important nitrogen compounds. Here we use 15N-tracer experiments to produce the first simultaneous measurements of ammonium oxidation, nitrate reduction, and nitrous oxide (N2O) production among five iconic species of reef-building corals (Acropora palmata, Diploria labyrinthiformis, Orbicella faveolata, Porites astreoides, and Porites porites) in the highly protected Jardines de la Reina reefs of Cuba. Nitrate reduction is present in most species, but ammonium oxidation is low potentially due to photoinhibition and assimilatory competition. Coral-associated rates of N2O production indicate a widespread potential for denitrification, especially among D. labyrinthiformis, at rates of ~1 nmol cm−2 d−1. In contrast, A. palmata displays minimal active nitrogen metabolism. Enhanced rates of nitrate reduction and N2O production are observed coincident with dark net respiration periods. Genomes of bacterial cultures isolated from multiple coral species confirm that microorganisms with the ability to respire nitrate anaerobically to either dinitrogen gas or ammonium exist within the holobiont. This confirmation of anaerobic nitrogen metabolisms by coral-associated microorganisms sheds new light on coral and reef productivity.
    Description: Research was conducted in the Gardens of the Queen, Cuba in accordance with the requirements of the Republic of Cuba, conducted under permit NV2370 and NV2568 issued by the Ministerio de Relaciones Exteriores. We gratefully acknowledge funding for this research by MIT Sea Grant award #2018-DOH-49-LEV, Simons Foundation award #622065, and MIT ESI seed funding to ARB, the MIT Montrym, Ferry, and mTerra Seed Grant Funds, and the generous contributions by Dr Bruce L. Heflinger.
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  • 94
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Seyler, L. M., Trembath-Reichert, E., Tully, B. J., & Huber, J. A. Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community. Isme Journal, (2020), doi:10.1038/s41396-020-00843-4.
    Description: The oceanic crustal aquifer is one of the largest habitable volumes on Earth, and it harbors a reservoir of microbial life that influences global-scale biogeochemical cycles. Here, we use time series metagenomic and metatranscriptomic data from a low-temperature, ridge flank environment representative of the majority of global hydrothermal fluid circulation in the ocean to reconstruct microbial metabolic potential, transcript abundance, and community dynamics. We also present metagenome-assembled genomes from recently collected fluids that are furthest removed from drilling disturbances. Our results suggest that the microbial community in the North Pond aquifer plays an important role in the oxidation of organic carbon within the crust. This community is motile and metabolically flexible, with the ability to use both autotrophic and organotrophic pathways, as well as function under low oxygen conditions by using alternative electron acceptors such as nitrate and thiosulfate. Anaerobic processes are most abundant in subseafloor horizons deepest in the aquifer, furthest from connectivity with the deep ocean, and there was little overlap in the active microbial populations between sampling horizons. This work highlights the heterogeneity of microbial life in the subseafloor aquifer and provides new insights into biogeochemical cycling in ocean crust.
    Description: The Gordon and Betty Moore Foundation sponsored most of the observatory components at North Pond through grant GBMF1609. This work was supported by NSF OCE-1062006, OCE-1745589 and OCE-1635208 to J.A.H. E.T.R. was supported by a NASA Postdoctoral Fellowship with the NASA Astrobiology Institute and a L’Oréal USA For Women in Science Fellowship. The Center for Dark Energy Biosphere Investigations (C-DEBI OCE-0939564) also supported the participation of J.A.H. and B.T. This is C-DEBI contribution number 548.
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  • 95
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in da Fonseca, R. R., Couto, A., Machado, A. M., Brejova, B., Albertin, C. B., Silva, F., Gardner, P., Baril, T., Hayward, A., Campos, A., Ribeiro, A. M., Barrio-Hernandez, I., Hoving, H. J., Tafur-Jimenez, R., Chu, C., Frazao, B., Petersen, B., Penaloza, F., Musacchia, F., Alexander, G. C., Osorio, H., Winkelmann, I., Simakov, O., Rasmussen, S., Rahman, M. Z., Pisani, D., Vinther, J., Jarvis, E., Zhang, G., Strugnell, J. M., Castro, L. F. C., Fedrigo, O., Patricio, M., Li, Q., Rocha, S., Antunes, A., Wu, Y., Ma, B., Sanges, R., Vinar, T., Blagoev, B., Sicheritz-Ponten, T., Nielsen, R., & Gilbert, M. T. P. A draft genome sequence of the elusive giant squid, Architeuthis dux. Gigascience, 9(1), (2020): giz152. doi: 10.1093/gigascience/giz152.
    Description: Background: The giant squid (Architeuthis dux; Steenstrup, 1857) is an enigmatic giant mollusc with a circumglobal distribution in the deep ocean, except in the high Arctic and Antarctic waters. The elusiveness of the species makes it difficult to study. Thus, having a genome assembled for this deep-sea–dwelling species will allow several pending evolutionary questions to be unlocked. Findings: We present a draft genome assembly that includes 200 Gb of Illumina reads, 4 Gb of Moleculo synthetic long reads, and 108 Gb of Chicago libraries, with a final size matching the estimated genome size of 2.7 Gb, and a scaffold N50 of 4.8 Mb. We also present an alternative assembly including 27 Gb raw reads generated using the Pacific Biosciences platform. In addition, we sequenced the proteome of the same individual and RNA from 3 different tissue types from 3 other species of squid (Onychoteuthis banksii, Dosidicus gigas, and Sthenoteuthis oualaniensis) to assist genome annotation. We annotated 33,406 protein-coding genes supported by evidence, and the genome completeness estimated by BUSCO reached 92%. Repetitive regions cover 49.17% of the genome. Conclusions: This annotated draft genome of A. dux provides a critical resource to investigate the unique traits of this species, including its gigantism and key adaptations to deep-sea environments.
    Description: R.R.F. thanks the Villum Fonden for grant VKR023446 (Villum Fonden Young Investigator Grant), the Portuguese Science Foundation (FCT) for grant PTDC/MAR/115347/2009; COMPETE-FCOMP-01-012; FEDER-015453, Marie Curie Actions (FP7-PEOPLE-2010-IEF, Proposal 272927), and the Danish National Research Foundation (DNRF96) for its funding of the Center for Macroecology, Evolution, and Climate. H.O. thanks the Rede Nacional de Espectrometria de Massa, ROTEIRO/0028/2013, ref. LISBOA-01-0145-FEDER-022125, supported by COMPETE and North Portugal Regional Operational Programme (Norte2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF). A.C. thanks FCT for project UID/Multi/04423/2019. M.P. acknowledges the support from the Wellcome Trust (grant number WT108749/Z/15/Z) and the European Molecular Biology Laboratory. M.P.T.G. thanks the Danish National Research Foundation for its funding of the Center for GeoGenetics (grant DNRF94) and Lundbeck Foundation for grant R52–5062 on Pathogen Palaeogenomics. S.R. was supported by the Novo Nordisk Foundation grant NNF14CC0001. A.H. is supported by a Biotechnology and Biological Sciences Research Council David Phillips Fellowship (fellowship reference: BB/N020146/1). T.B. is supported by the Biotechnology and Biological Sciences Research Council-funded South West Biosciences Doctoral Training Partnership (training grant reference BB/M009122/1). This work was partially funded by the Lundbeck Foundation (R52-A4895 to B.B.). H.J.T.H. was supported by the David and Lucile Packard Foundation, the Netherlands Organization for Scientific Research (#825.09.016), and currently by the Deutsche Forschungsgemeinschaft (DFG) under grant HO 5569/2-1 (Emmy Noether Junior Research Group). T.V. and B. Brejova were supported by grants from the Slovak grant agency VEGA (1/0684/16, 1/0458/18). F.S. was supported by a PhD grant (SFRH/BD/126560/2016) from FCT. A.A. was partly supported by the FCT project PTDC/CTA-AMB/31774/2017. C.C. and Y.W. are partly supported by grant IIS-1526415 from the US National Science Foundation. Computation for the work described in this article was partially supported by the DeiC National Life Science Supercomputer at DTU.
    Keywords: Cephalopod ; Invertebrate ; Genome assembly
    Repository Name: Woods Hole Open Access Server
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  • 96
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tassia, M. G., David, K. T., Townsend, J. P., & Halanych, K. M. TIAMMAt: leveraging biodiversity to revise protein domain models, evidence from innate immunity. Molecular Biology and Evolution, 38(12), (2021): 5806–5818, https://doi.org/10.1093/molbev/msab258.
    Description: Sequence annotation is fundamental for studying the evolution of protein families, particularly when working with nonmodel species. Given the rapid, ever-increasing number of species receiving high-quality genome sequencing, accurate domain modeling that is representative of species diversity is crucial for understanding protein family sequence evolution and their inferred function(s). Here, we describe a bioinformatic tool called Taxon-Informed Adjustment of Markov Model Attributes (TIAMMAt) which revises domain profile hidden Markov models (HMMs) by incorporating homologous domain sequences from underrepresented and nonmodel species. Using innate immunity pathways as a case study, we show that revising profile HMM parameters to directly account for variation in homologs among underrepresented species provides valuable insight into the evolution of protein families. Following adjustment by TIAMMAt, domain profile HMMs exhibit changes in their per-site amino acid state emission probabilities and insertion/deletion probabilities while maintaining the overall structure of the consensus sequence. Our results show that domain revision can heavily impact evolutionary interpretations for some families (i.e., NLR’s NACHT domain), whereas impact on other domains (e.g., rel homology domain and interferon regulatory factor domains) is minimal due to high levels of sequence conservation across the sampled phylogenetic depth (i.e., Metazoa). Importantly, TIAMMAt revises target domain models to reflect homologous sequence variation using the taxonomic distribution under consideration by the user. TIAMMAt’s flexibility to revise any subset of the Pfam database using a user-defined taxonomic pool will make it a valuable tool for future protein evolution studies, particularly when incorporating (or focusing) on nonmodel species.
    Description: This work was supported by The National Science Foundation (Grant No. IOS—1755377 to K.M.H., Rita Graze, and Elizabeth Hiltbold Schwartz), and K.T.D. was supported by The National Science Foundation’s Graduate Research Fellowship Program.
    Keywords: Protein evolution ; Domain annotation ; Animal evolution ; Innate immunity
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  • 97
    Publication Date: 2022-10-27
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Sherwood, C. R., van Dongeren, A., Doyle, J., Hegermiller, C. A., Hsu, T.-J., Kalra, T. S., Olabarrieta, M., Penko, A. M., Rafati, Y., Roelvink, D., van der Lugt, M., Veeramony, J., & Warner, J. C. Modeling the morphodynamics of coastal responses to extreme events: what shape are we in? Annual Review of Marine Science, 14, (2022): 457–492, https://doi.org/10.1146/annurev-marine-032221-090215.
    Description: This review focuses on recent advances in process-based numerical models of the impact of extreme storms on sandy coasts. Driven by larger-scale models of meteorology and hydrodynamics, these models simulate morphodynamics across the Sallenger storm-impact scale, including swash,collision, overwash, and inundation. Models are becoming both wider (as more processes are added) and deeper (as detailed physics replaces earlier parameterizations). Algorithms for wave-induced flows and sediment transport under shoaling waves are among the recent developments. Community and open-source models have become the norm. Observations of initial conditions (topography, land cover, and sediment characteristics) have become more detailed, and improvements in tropical cyclone and wave models provide forcing (winds, waves, surge, and upland flow) that is better resolved and more accurate, yielding commensurate improvements in model skill. We foresee that future storm-impact models will increasingly resolve individual waves, apply data assimilation, and be used in ensemble modeling modes to predict uncertainties.
    Description: All authors except D.R. were partially supported by the IFMSIP project, funded by US Office of Naval Research grant PE 0601153N under contracts N00014-17-1-2459 (Deltares), N00014-18-1-2785 (University of Delaware), N0001419WX00733 (US Naval Research Laboratory, Monterey), N0001418WX01447 (US Naval Research Laboratory, Stennis Space Center), and N0001418IP00016 (US Geological Survey). C.R.S., C.A.H., T.S.K., and J.C.W. were supported by the US Geological Survey Coastal/Marine Hazards and Resources Program. A.v.D. and M.v.d.L. were supported by the Deltares Strategic Research project Quantifying Flood Hazards and Impacts. M.O. acknowledges support from National Science Foundation project OCE-1554892.
    Keywords: Coastal morphodynamics ; Extreme storms ; Coastal modeling ; Sandy coasts ; Waves ; Sediment transport
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  • 98
    Publication Date: 2022-10-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Shoshan, Y., Liscovitch-Brauer, N., Rosenthal, J. J. C., & Eisenberg, E. Adaptive proteome diversification by nonsynonymous A-to-I RNA editing in coleoid cephalopods. Molecular Biology and Evolution, 38(9), (2021): 3775–3788, https://doi.org/10.1093/molbev/msab154.
    Description: RNA editing by the ADAR enzymes converts selected adenosines into inosines, biological mimics for guanosines. By doing so, it alters protein-coding sequences, resulting in novel protein products that diversify the proteome beyond its genomic blueprint. Recoding is exceptionally abundant in the neural tissues of coleoid cephalopods (octopuses, squids, and cuttlefishes), with an over-representation of nonsynonymous edits suggesting positive selection. However, the extent to which proteome diversification by recoding provides an adaptive advantage is not known. It was recently suggested that the role of evolutionarily conserved edits is to compensate for harmful genomic substitutions, and that there is no added value in having an editable codon as compared with a restoration of the preferred genomic allele. Here, we show that this hypothesis fails to explain the evolutionary dynamics of recoding sites in coleoids. Instead, our results indicate that a large fraction of the shared, strongly recoded, sites in coleoids have been selected for proteome diversification, meaning that the fitness of an editable A is higher than an uneditable A or a genomically encoded G.
    Description: This research was supported by a grants from the United States–Israel Binational Science Foundation (BSF), Jerusalem, Israel (BSF2017262 to J.J.C.R. and E.E.), the Israel Science Foundation (3371/20 to E.E.) and the National Science Foundation (IOS 1827509 and 1557748 to J.J.C.R).
    Keywords: RNA editing ; Adaptation ; Evolution
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  • 99
    Publication Date: 2022-10-12
    Description: Author Posting. © The Author(s), 2022. This is the author's version of the work. It is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Integrative & Comparative Biology 62(3), (2022): 805-816, https://doi.org/10.1093/icb/icac108.
    Description: Skates are a diverse group of dorso-ventrally compressed cartilaginous fish found primarily in high-latitude seas. These slow-growing oviparous fish deposit their fertilized eggs into cases, which then rest on the seafloor. Developing skates remain in their cases for 1–4 years after they are deposited, meaning the abiotic characteristics of the deposition sites, such as current and substrate type, must interact with the capsule in a way to promote long residency. Egg cases are morphologically variable and can be identified to species. Both the gross morphology and the microstructures of the egg case interact with substrate to determine how well a case stays in place on a current-swept seafloor. Our study investigated the egg case hydrodynamics of eight North Pacific skate species to understand how their morphology affects their ability to stay in place. We used a flume to measure maximum current velocity, or “break-away velocity,” each egg case could withstand before being swept off the substrate and a tilt table to measure the coefficient of static friction between each case and the substrate. We also used the programing software R to calculate theoretical drag on the egg cases of each species. For all flume trials, we found the morphology of egg cases and their orientation to flow to be significantly correlated with break-away velocity. In certain species, the morphology of the egg case was correlated with flow rate required to dislodge a case from the substrate in addition to the drag experienced in both the theoretical and flume experiments. These results effectively measure how well the egg cases of different species remain stationary in a similar habitat. Parsing out attachment biases and discrepancies in flow regimes of egg cases allows us to identify where we are likely to find other elusive species nursery sites. These results will aid predictive models for locating new nursery habitats and protective policies for avoiding the destruction of these nursery sites.
    Description: This work was supported by the NSF-REU and FHL Blinks-Beacon for funding JNE. And the Stephen and Ruth Wainwright Endowed Fellowship, BEACON and Hoag Awards, Robert T. Paine Experimental and Field Ecology Award, FHL Award, FHL Marine Science Fund, FHL Student Fund (Kohn), Patricia L. Dudley Endowment for funding KCH.
    Description: 2023-07-04
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  • 100
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bucklin, A., Peijnenburg, K. T. C. A., Kosobokova, K. N., O'Brien, T. D., Blanco-Bercial, L., Cornils, A., Falkenhaug, T., Hopcroft, R. R., Hosia, A., Laakmann, S., Li, C., Martell, L., Questel, J. M., Wall-Palmer, D., Wang, M., Wiebe, P. H., & Weydmann-Zwolicka, A. Toward a global reference database of COI barcodes for marine zooplankton. Marine Biology, 168(6), (2021): 78, https://doi.org/10.1007/s00227-021-03887-y.
    Description: Characterization of species diversity of zooplankton is key to understanding, assessing, and predicting the function and future of pelagic ecosystems throughout the global ocean. The marine zooplankton assemblage, including only metazoans, is highly diverse and taxonomically complex, with an estimated ~28,000 species of 41 major taxonomic groups. This review provides a comprehensive summary of DNA sequences for the barcode region of mitochondrial cytochrome oxidase I (COI) for identified specimens. The foundation of this summary is the MetaZooGene Barcode Atlas and Database (MZGdb), a new open-access data and metadata portal that is linked to NCBI GenBank and BOLD data repositories. The MZGdb provides enhanced quality control and tools for assembling COI reference sequence databases that are specific to selected taxonomic groups and/or ocean regions, with associated metadata (e.g., collection georeferencing, verification of species identification, molecular protocols), and tools for statistical analysis, mapping, and visualization. To date, over 150,000 COI sequences for ~ 5600 described species of marine metazoan plankton (including holo- and meroplankton) are available via the MZGdb portal. This review uses the MZGdb as a resource for summaries of COI barcode data and metadata for important taxonomic groups of marine zooplankton and selected regions, including the North Atlantic, Arctic, North Pacific, and Southern Oceans. The MZGdb is designed to provide a foundation for analysis of species diversity of marine zooplankton based on DNA barcoding and metabarcoding for assessment of marine ecosystems and rapid detection of the impacts of climate change.
    Description: Funding sources for authors of the review paper are described here: Scientific Committee on Oceanic Research (SCOR), and a grant to SCOR from the U.S. National Science Foundation (OCE-1840868). Netherlands Organization for Scientific Research (NWO) Vidi Grant/Award Number: 016.161.351 to K.T.C.A.P. European Union Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No. 746186 (POSEIDoN) to D.W.P. The work of K.N.K. was performed in the framework of the state assignment of IO RAS (Theme No. 0128-2021-0007) and partially supported by Russian Foundation for Basic Research grants No. 18-05-60158 and No. 19-04-00955. The work of A.W.Z. was supported by a grant from HIDEA—Hidden diversity of the Arctic Ocean (No. 2017/27/B/NZ8/01056) from the National Science Centre, Poland, and a Fulbright Senior Award. The Norwegian Taxonomy Initiative of the Norwegian Biodiversity Information Centre provided funding for A.H. and L.M. (Project Nos. 70184233/HYPNO and 70184240/NORHYDRO), and for T.F. (Project Nos. 70184233/COPCLAD and 70184241/HYPCOP). The work of R.R.H. and J.M.Q. was supported by Census of Marine Life and NOAA Ocean Exploration and Research (NA05OAR4601079 and NA15OAR0110209). The work of S.L. was conducted at the Helmholtz Institute for Functional Marine Biodiversity at the University of Oldenburg (HIFMB). HIFMB is a collaboration between the Alfred-Wegener-Institute, Helmholtz-Center for Polar and Marine Research, and the Carl-von-Ossietzky University Oldenburg, initially funded by the Ministry for Science and Culture of Lower Saxony and the Volkswagen Foundation through the Niedersächsisches Vorab’ grant program (Grant No. ZN3285).
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