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  • Oxford University Press  (44)
  • Naturalis Biodiversity Center  (40)
  • American Geophysical Union
  • Annual Reviews
  • Blackwell Publishing Ltd
  • 2020-2024  (107)
  • 1980-1984
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  • 2020  (107)
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  • 1
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    Seafloor massive sulphide exploration using deep-towed controlled source electromagnetics: Navigational uncertainties (2020)
    Oxford University Press
    Details
    Publication Date: 2023-02-08
    Description: Deep-towed geophysical surveys require precise knowledge of navigational parameters such as instrument position and orientation because navigational uncertainties reflect in the data and therefore in the inferred geophysical properties of the subseafloor. We address this issue for the case of electrical conductivity inferred from controlled source electromagnetic data. We show that the data error is laterally variable due to irregular motion during deep towing, but also due to lateral variations in conductivity, including those resulting from topography. To address this variability and quantify the data error prior to inversion, we propose a 2-D perturbation study. Our workflow enables stable and geologically reliable results for multicomponent and multifrequency inversions. An error estimation workflow is presented, which comprises the assessment of navigational uncertainties, perturbation of navigational parameters, and forward modelling of electric field amplitudes for a homogeneous and then a heterogeneous subseafloor conductivity model. Some navigational uncertainties are estimated from variations of direct measurements. Other navigational parameters required for inversion are derived from the measured quantities and their error is calculated by means of error propagation. Some navigational parameters show direct correlation with the measured electric fields. For example, the antenna dip correlates with the vertical electric field and the depth correlates with the horizontal electric field. For the perturbation study each standard deviation is added to the navigational parameters. Forward models are run for each perturbation. Amplitude deviations are summed in quadrature with the stacking error for a total, laterally varying, data error. The error estimation is repeated for a heterogeneous subseafloor model due to the large conductivity range (several orders of magnitude), which affects the forward model. The approach enables us to utilize data from several components (multiple electric fields, frequencies and receivers) in the inversion to constrain the final model and reduce ambiguity. The final model is geologically reasonable, in this case enabling the identification of conductive metal sulphide deposits on the seafloor.
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  • 2
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    Ocean Acidification and Coastal Marine Invertebrates: Tracking CO2 Effects from Seawater to the Cell (2020)
    Annual Reviews
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    Publication Date: 2023-02-08
    Description: In the last few decades, numerous studies have investigated the impacts of simulated ocean acidification on marine species and communities, particularly those inhabiting dynamic coastal systems. Despite these research efforts, there are many gaps in our understanding, particularly with respect to physiological mechanisms that lead to pathologies. In this review, we trace how carbonate system disturbances propagate from the coastal environment into marine invertebrates and highlight mechanistic links between these disturbances and organism function. We also point toward several processes related to basic invertebrate biology that are severely understudied and prevent an accurate understanding of how carbonate system dynamics influence organismic homeostasis and fitness-related traits. We recommend that significant research effort be directed to studying cellular phenotypes of invertebrates acclimated or adapted to elevated seawater pCO2 using biochemical and physiological methods.
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  • 3
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    A draft genome sequence of the elusive giant squid, Architeuthis dux (2020)
    Oxford University Press
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    Publication Date: 2023-02-08
    Description: Background: The giant squid (Architeuthis dux; Steenstrup, 1857) is an enigmatic giant mollusc with a circumglobal distribution in the deep ocean, except in the high Arctic and Antarctic waters. The elusiveness of the species makes it difficult to study. Thus, having a genome assembled for this deep-sea-dwelling species will allow several pending evolutionary questions to be unlocked. Findings: We present a draft genome assembly that includes 200 Gb of Illumina reads, 4 Gb of Moleculo synthetic long reads, and 108 Gb of Chicago libraries, with a final size matching the estimated genome size of 2.7 Gb, and a scaffold N50 of 4.8 Mb. We also present an alternative assembly including 27 Gb raw reads generated using the Pacific Biosciences platform. In addition, we sequenced the proteome of the same individual and RNA from 3 different tissue types from 3 other species of squid (Onychoteuthis banksii, Dosidicus gigas, and Sthenoteuthis oualaniensis) to assist genome annotation. We annotated 33,406 protein-coding genes supported by evidence, and the genome completeness estimated by BUSCO reached 92%. Repetitive regions cover 49.17% of the genome. Conclusions: This annotated draft genome of A. dux provides a critical resource to investigate the unique traits of this species, including its gigantism and key adaptations to deep-sea environments.
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  • 4
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    Experimental parasite infection causes genome-wide changes in DNA methylation (2020)
    Oxford University Press
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    Publication Date: 2023-02-08
    Description: Parasites are arguably among the strongest drivers of natural selection, constraining hosts to evolve resistance and tolerance mechanisms. Although, the genetic basis of adaptation to parasite infection has been widely studied, little is known about how epigenetic changes contribute to parasite resistance and eventually, adaptation. Here, we investigated the role of host DNA methylation modifications to respond to parasite infections. In a controlled infection experiment, we used the three-spined stickleback fish, a model species for host-parasite studies, and their nematode parasite Camallanus lacustris. We showed that the levels of DNA methylation are higher in infected fish. Results furthermore suggest correlations between DNA methylation and shifts in key fitness and immune traits between infected and control fish, including respiratory burst and functional trans-generational traits such as the concentration of motile sperm. We revealed that genes associated with metabolic, developmental and regulatory processes (cell death and apoptosis) were differentially methylated between infected and control fish. Interestingly, genes such as the neuropeptide FF receptor 2 and the integrin alpha 1 as well as molecular pathways including the Th1 and Th2 cell differentiation were hypermethylated in infected fish, suggesting parasite-mediated repression mechanisms of immune responses. Altogether, we demonstrate that parasite infection contributes to genome-wide DNA methylation modifications. Our study brings novel insights into the evolution of vertebrate immunity and suggests that epigenetic mechanisms are complementary to genetic responses against parasite-mediated selection.
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  • 5
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    Temporal evolution of proto-Izu–Bonin–Mariana arc volcanism over 10 Ma: Constraints from statistical analysis of melt inclusion compositions (2020)
    Oxford University Press
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    Publication Date: 2023-02-08
    Description: International Ocean Discovery Program (IODP) Expedition 351 “Izu–Bonin–Mariana (IBM) Arc Origins” drilled Site U1438, situated in the north-western region of the Philippine Sea. Here volcaniclastic sediments and the igneous basement of the proto-IBM volcanic arc were recovered. To gain a better understanding of the magmatic processes and evolution of the proto-IBM arc, we studied melt inclusions hosted in fresh igneous minerals and sampled from 30- to 40-Ma-old deposits, reflecting the maturation of arc volcanism following subduction initiation at 52 Ma. We performed a novel statistical analysis on the major element composition of 237 representative melt inclusions selected from a previously published dataset, covering the full age range between 30 and 40 Ma. In addition, we analysed volatiles (H2O, S, F and Cl) and P2O5 by Secondary Ion Mass Spectrometry (SIMS) for a subset of 47 melt inclusions selected from the dataset. Based on statistical analysis of the major element composition of melt inclusions and by considering their trace and volatile element compositions, we distinguished five main clusters of melt inclusions, which can be further separated into a total of eight subclusters. Among the eight subclusters, we identified three major magma types: (1) enriched medium-K magmas, which form a tholeiitic trend (30–38 Ma); (2) enriched medium-K magmas, which form a calc-alkaline trend (30–39 Ma); and (3) depleted low-K magmas, which form a calc-alkaline trend (35–40 Ma). We demonstrate that (1) the eruption of depleted low-K calc-alkaline magmas occurred prior to 40 Ma and ceased sharply at 35 Ma; (2) the eruption of depleted low-K calc-alkaline magmas, enriched medium-K calc-alkaline magmas and enriched medium-K tholeiitic magmas overlapped between 35 and 38 − 39 Ma; and (3) the eruption of enriched medium-K tholeiitic and enriched medium-K calc-alkaline magmas became predominant thereafter at the proto-IBM arc. Identification of three major magma types are distinct from the previous work, in which enriched medium-K calc-alkaline magmas and depleted low-K calc-alkaline magmas were not identified. This indicates the usefulness of our statistical analysis as a powerful tool to partition a mixture of multivariable geochemical datasets, such as the composition of melt inclusions in this case. Our data suggest that a depleted mantle source had been replaced by an enriched mantle source due to convection beneath the proto-IBM arc from >40 to 35 Ma. Finally, thermodynamic modelling indicates that the overall geochemical variation of melt inclusions assigned to each cluster can be broadly reproduced either by crystallisation differentiation assuming P = 50 MPa (∼2-km deep) and ∼2 wt % H2O (almost saturated H2O content at 50 MPa) or P = 300 MPa (∼15-km deep) and ∼6 wt % H2O (almost saturated H2O content at 300 MPa). Assuming oxygen fugacity (fO2) of log fO2 equal to + 1 relative to nickel-nickel oxide (NNO) buffer best reproduces the overall geochemical variation of melt inclusions, but assuming a more oxidising conditions (log fO2 = +1 to + 2 NNO) likely reproduces the geochemical variation of enriched medium-K and calc-alkaline melt inclusions (30 − 39 Ma).
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  • 6
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    Ratio-independent prey preferences by an estuarine mysid (2020)
    Oxford University Press
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    Publication Date: 2023-02-08
    Description: The present study quantified prey preferences by adult males and females of the mysid Mesopodopsis wooldridgei fed the calanoid copepods Pseudodiaptomus hessei and Paracartia longipatella at varying proportions. Both sexes of M. wooldridgei showed a lack of prey switching and a strong preference for the smaller, less active P. longipatella irrespective of density. Given a lack of low-density prey refuge, this finding may have important implications for the distribution of P. longipatella in estuaries along the eastern seaboard of South Africa. Results of the present study contribute to a growing body of literature that suggests that selective predation may play an important role in structuring plankton prey populations in shallow water ecosystems.
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  • 7
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    Editorial: special issue on sponge microbiome (2020)
    Oxford University Press
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    Publication Date: 2023-02-08
    Type: Article , PeerReviewed
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  • 8
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    A genomic cluster containing novel and conserved genes is associated with cichlid fish dental developmental convergence (2020)
    Oxford University Press
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    Publication Date: 2023-02-08
    Description: The two toothed jaws of cichlid fishes provide textbook examples of convergent evolution. Tooth phenotypes such as enlarged molar-like teeth used to process hard-shelled molluscs have evolved numerous times independently during cichlid diversification. While the ecological benefit of molar-like teeth to crush prey is known, it is unclear whether the same molecular mechanisms underlie these convergent traits. To identify genes involved in the evolution and development of enlarged cichlid teeth, we performed RNA-seq on the serially homologous toothed oral and pharyngeal jaws as well as the fourth toothless gill arch of Astatoreochromis alluaudi. We identified 27 genes that are highly upregulated on both tooth-bearing jaws compared to the toothless gill arch. Most of these genes have never been reported to play a role in tooth formation. Two of these genes (unk, rpfA) are not found in other vertebrate genomes but are present in all cichlid genomes. They also cluster genomically with two other highly expressed tooth genes (odam, scpp5) that exhibit conserved expression during vertebrate odontogenesis. Unk and rpfA were confirmed via in situ hybridization to be expressed in developing teeth of Astatotilapia burtoni. We then examined expression of the cluster's four genes in six evolutionarily independent and phylogenetically disparate cichlid species pairs each with a large- and a small-toothed species. Odam and unk commonly and scpp5 and rpfA always showed higher expression in larger-toothed cichlid jaws. Convergent trophic adaptations across cichlid diversity are associated with the repeated developmental deployment of this genomic cluster containing conserved and novel cichlid-specific genes.
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  • 9
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    The Obscuring Effects of Calcite Dissolution and Formation on Quantifying Soil Respiration (2020)
    American Geophysical Union
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    Publication Date: 2020-11-28
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
    Published by American Geophysical Union
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  • 10
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    Soil Water Content and Soil Respiration Rates Are Reduced for Years Following Wildfire in a Hot and Dry Climate (2020)
    American Geophysical Union
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    Publication Date: 2020-11-26
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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  • 11
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    Compact galaxies and the size–mass galaxy distribution from a colour-selected sample at 0.04 〈 z 〈 0.15 supplemented by ugrizYJHK photometric redshifts (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: The size–mass galaxy distribution is a key diagnostic for galaxy evolution. Massive compact galaxies are potential surviving relics of a high-redshift phase of star formation. Some of these could be nearly unresolved in Sloan Digital Sky Survey (SDSS) imaging and thus not included in galaxy samples. To overcome this, a sample was selected from the combination of SDSS and UKIRT Infrared Deep Sky Survey (UKIDSS) photometry to r 〈 17.8. This was done using colour–colour selection, and then by obtaining accurate photometric redshifts (photo-z) using scaled flux matching (SFM). Compared to spectroscopic redshifts (spec-z), SFM obtained a 1σ scatter of 0.0125 with only 0.3 per cent outliers (|Δln (1 + z)| 〉 0.06). A sample of 163 186 galaxies was obtained with 0.04 〈 z 〈 0.15 over $2300, { m deg}^2$ using a combination of spec-z and photo-z. Following Barro et al. log Σ1.5 = log M* − 1.5log r50, maj was used to define compactness. The spectroscopic completeness was 76 per cent for compact galaxies (log Σ1.5 〉 10.5) compared to 92 per cent for normal-sized galaxies. This difference is primarily attributed to SDSS ‘fibre collisions’ and not the completeness of the main galaxy sample selection. Using environmental overdensities, this confirms that compact quiescent galaxies are significantly more likely to be found in high-density environments compared to normal-sized galaxies. By comparison with a high-redshift sample from 3D-HST, log Σ1.5 distribution functions show significant evolution, with this being a compelling way to compare with simulations such as EAGLE. The number density of compact quiescent galaxies drops by a factor of about 30 from z ∼ 2 to log (n/Mpc−3) = − 5.3 ± 0.4 in the SDSS–UKIDSS sample. The uncertainty is dominated by the steep cut off in log Σ1.5, which is demonstrated conclusively using this complete sample.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
    Published by Oxford University Press on behalf of The Royal Astronomical Society.
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  • 12
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    High-resolution spectroscopy of the hot Am star HR 3383 (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: We present the spectrum analysis of the hot Am star HR 3383 (A1 Vm). Hubble Space Telescope STIS and Nordic Optical Telescope SOFIN data are modelled with synthetic spectra, and abundances are investigated for 78 elements. Most light elements up through oxygen show deficiencies, compared to solar abundances, followed by the general trend of increasing abundance enhancement with atomic number that levels off at a 30-fold enhancement at the lanthanide group and heavier elements. The derived element distribution is generally consistent with what is observed in other hot Am stars. Abundances for HR 3383 are also similar to what is seen for the cooler HgMn stars, with the exception of the platinum-group elements that generally show dramatic enhancements in the HgMn stars. Current theory and calculations are able to predict most observed abundances and abundance trends through the iron group. The large number of derived element abundances in this study provides a constraint for theoretical calculations attempting to explain the heavy element abundances in chemically peculiar stars. This paper includes a comprehensive description of spectral lines useful for an abundance analysis of late B and A type stars, and comments are provided on the atomic data. New data for hyperfine structure components for three lines in Lu iii and a single line in Lu ii are presented, based on laboratory spectra. In addition to the stellar spectrum, lines from the interstellar medium are noted for several of the strongest Fe ii ultraviolet transitions.
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  • 13
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    Study of central intensity ratio of early-type galaxies from low-density environment (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: We present correlations involving central intensity ratio (CIR) of 52 early-type galaxies, including 24 ellipticals and 28 lenticulars, selected from low-density environment in the nearby (
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  • 14
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    Convective H–He interactions in massive population III stellar evolution models (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: In Pop III stellar models, convection-induced mixing between H- and He-rich burning layers can induce a burst of nuclear energy and thereby substantially alter the subsequent evolution and nucleosynthesis in the first massive stars. We investigate H–He shell and core interactions in 26 stellar evolution simulations with masses 15–140, M⊙, using five sets of mixing assumptions. In 22 cases H–He interactions induce local nuclear energy release in the range $sim 10^{9}!-!10^{13.5}, mathrm{L}_{odot }$. The luminosities on the upper end of this range amount to a substantial fraction of the layer’s internal energy over a convective advection time-scale, indicating a dynamic stellar response that would violate 1D stellar evolution modelling assumptions. We distinguish four types of H–He interactions depending on the evolutionary phase and convective stability of the He-rich material. H-burning conditions during H–He interactions give 12C/13C ratios between ≈ 1.5 to ∼1000 and [C/N] ratios from ≈ −2.3 to ≈ 3 with a correlation that agrees well with observations of CEMP (carbon-enhanced metal-poor) no stars. We also explore Ca production from hot CNO breakout and find the simulations presented here likely cannot explain the observed Ca abundance in the most Ca-poor CEMP-no star. We describe the evolution leading to H–He interactions, which occur during or shortly after core-contraction phases. Three simulations without an H–He interaction are computed to Fe-core infall and a $140, mathrm{M}_{odot }$ simulation becomes pair unstable. We also discuss present modelling limitations and the need for 3D hydrodynamic models to fully understand these stellar evolutionary phases.
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  • 15
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    Global Biogeochemical Cycle of Fluorine (2020)
    American Geophysical Union
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    Publication Date: 2020-11-26
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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  • 16
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    Measuring the total infrared light from galaxy clusters at z = 0.5–1.6: connecting stellar populations to dusty star formation (2020)
    Oxford University Press
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    Publication Date: 2020-10-31
    Description: Massive galaxy clusters undergo strong evolution from z ∼ 1.6 to z ∼ 0.5, with overdense environments at high-z characterized by abundant dust-obscured star formation and stellar mass growth which rapidly give way to widespread quenching. Data spanning the near- to far-infrared (IR) can directly trace this transformation; however, such studies have largely been limited to the massive galaxy end of cluster populations. In this work, we present ‘total light’ stacking techniques spanning $3.4!-!500, mu$m aimed at revealing the total cluster emission, including low-mass members and potential intracluster dust. We detail our procedures for WISE, Spitzer, and Herschel imaging, including corrections to recover the total stacked emission in the case of high fractions of detected galaxies. We apply our techniques to 232 well-studied log$, M_{200}/mathrm{M}_{odot }sim 13.8$ clusters in multiple redshift bins, recovering extended cluster emission at all wavelengths. We measure the averaged IR radial profiles and spectral energy distributions (SEDs), quantifying the total stellar and dust content. The near-IR profiles are well described by an NFW model with a high (c ∼ 7) concentration. Dust emission is similarly concentrated, albeit suppressed at $rlesssim 0.3,$Mpc. The measured SEDs lack warm dust, consistent with the colder SEDs of low-mass galaxies. We derive total stellar masses consistent with the theoretical Mhalo−M⋆ relation and specific star formation rates that evolve strongly with redshift, echoing that of log$, M_{star }/mathrm{M}_{odot }gtrsim 10$ cluster galaxies. Separating out the massive population reveals the majority of cluster far-IR emission ($sim 70!-!80{{ m per cent}}$) is provided by the low-mass constituents, which differs from field galaxies. This effect may be a combination of mass-dependent quenching and excess dust in low-mass cluster galaxies.
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  • 17
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    Empirical estimates of the Galactic halo contribution to the dispersion measures of extragalactic fast radio bursts using X-ray absorption (2020)
    Oxford University Press
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    Publication Date: 2020-10-28
    Description: We provide an empirical list of the Galactic dispersion measure (DMGal) contribution to the extragalactic fast radio bursts (FRBs) along 72 sightlines. It is independent of any model of the Galaxy, i.e. we do not assume the density of the disc or the halo, spatial extent of the halo, baryonic mass content, or any such external constraints to measure DMGal. We use 21-cm, UV, EUV, and X-ray data to account for different phases, and find that DMGal is dominated by the hot phase probed by X-ray absorption. We improve upon the measurements of N($ m{O},{small VII}$) and f$_{ m O,{small VII}}$ compared to previous studies, thus providing a better estimate of the hot phase contribution. The median DMGal = 64$^{+20}_{-23}$ cm−3 pc, with a 68 per cent (90 per cent) confidence interval of 33–172 (23–660) cm−3 pc. The DMGal does not appear to follow any trend with the Galactic longitude or latitude, and there is a large scatter around the values predicted by simple disc + spherical halo models. Our measurements provide more complete and accurate estimates of DMGal independent from the previous studies. We provide a table and a code to retrieve DMGal for any FRB localized in the sky.
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  • 18
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    How accurately can we detect the splashback radius of dark matter haloes and its correlation with accretion rate? (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: The splashback radius (Rsp) of dark matter haloes has recently been detected using weak gravitational lensing and cross-correlations with galaxies. However, different methods have been used to measure Rsp and to assess the significance of its detection. In this paper, we use simulations to study the precision and accuracy to which we can detect the splashback radius with 3D density, 3D subhalo, and weak lensing profiles. We study how well various methods and tracers recover Rsp by comparing it with the value measured directly from particle dynamics. We show that estimates of Rsp from density and subhalo profiles correspond to different percentiles of the underlying Rsp distribution of particle orbits. At low accretion rates, a second caustic appears and can bias results. Finally, we show that upcoming lensing surveys may be able to constrain the Rsp–Γdyn relation directly.
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  • 19
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    The flaring X-ray corona in the quasar PDS 456 (2020)
    Oxford University Press
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    Publication Date: 2020-10-30
    Description: New Swift monitoring observations of the variable, radio-quiet quasar, PDS 456, are presented. A bright X-ray flare was captured in 2018 September, the flux increasing by a factor of 4 and with a doubling time-scale of 2 d. From the light crossing argument, the coronal size is inferred to be ≲30 gravitational radii for a black hole mass of 109 M⊙ and the total flare energy exceeds 1051 erg. A hardening of the X-ray emission accompanied the flare, with the photon index decreasing from Γ = 2.2 to Γ = 1.7 and back again. The flare is produced in the X-ray corona, the lack of any optical or UV variability being consistent with a constant accretion rate. Simultaneous XMM–Newton and NuSTAR observations were performed, 1–3 d after the flare peak and during the decline phase. These caught PDS 456 in a bright, bare state, where no disc wind absorption features are apparent. The hard X-ray spectrum shows a high energy roll-over, with an e-folding energy of $E_{ m fold}=51^{+11}_{-8}$ keV. The deduced coronal temperature, of kT = 13 keV, is one of the coolest measured in any AGN and PDS 456 lies well below the predicted pair annihilation line in X-ray corona. The spectral variability, becoming softer when fainter following the flare, is consistent with models of cooling X-ray coronae. Alternatively, an increase in a non-thermal component could contribute towards the hard X-ray flare spectrum.
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  • 20
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    Resolving the outer ring of HD 38206 using ALMA and constraining limits on planets in the system (2020)
    Oxford University Press
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    Publication Date: 2020-10-29
    Description: HD 38206 is an A0V star in the Columba association, hosting a debris disc first discovered by IRAS. Further observations by Spitzer and Herschel showed that the disc has two components, likely analogous to the asteroid and Kuiper belts of the Solar system. The young age of this star makes it a prime target for direct imaging planet searches. Possible planets in the system can be constrained using the debris disc. Here, we present the first ALMA observations of the system’s Kuiper belt and fit them using a forward modelling MCMC approach. We detect an extended disc of dust peaking at around 180 au with a width of 140 au. The disc is close to edge on and shows tentative signs of an asymmetry best fit by an eccentricity of $0.25^{+0.10}_{-0.09}$. We use the fitted parameters to determine limits on the masses of planets interior to the cold belt. We determine that a minimum of four planets are required, each with a minimum mass of 0.64 MJ, in order to clear the gap between the asteroid and Kuiper belts of the system. If we make the assumption that the outermost planet is responsible for the stirring of the disc, the location of its inner edge and the eccentricity of the disc, then we can more tightly predict its eccentricity, mass, and semimajor axis to be $e_{ m {p}}=0.34^{+0.20}_{-0.13}$, $m_{ m {p}}=0.7^{+0.5}_{-0.3}, m {it M}_{ m {J}}$, and $a_{ m {p}}=76^{+12}_{-13}, m {au}$.
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  • 21
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    X-ray evolution of the nova V959 Mon suggests a delayed ejection and a non-radiative shock (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-29
    Description: X-ray observations of shocked gas in novae can provide a useful probe of the dynamics of the ejecta. Here we report on X-ray observations of the nova V959 Mon, which was also detected in GeV gamma-rays with the Fermi satellite. We find that the X-ray spectra are consistent with a two-temperature plasma model with non-solar abundances. We interpret the X-rays as due to shock interaction between the slow equatorial torus and the fast polar outflow that were inferred from radio observations of V959 Mon. We further propose that the hotter component, responsible for most of the flux, is from the reverse shock driven into the fast outflow. We find a systematic drop in the column density of the absorber between days 60 and 140, consistent with the expectations for such a picture. We present intriguing evidence for a delay of around 40 d in the expulsion of the ejecta from the central binary. Moreover, we infer a relatively small (a few times 10−6 M⊙) ejecta mass ahead of the shock, considerably lower than the mass of 104 K gas inferred from radio observations. Finally, we infer that the dominant X-ray shock was likely not radiative at the time of our observations, and that the shock power was considerably higher than the observed X-ray luminosity. It is unclear why high X-ray luminosity, closer to the inferred shock power, is never seen in novae at early times, when the shock is expected to have high enough density to be radiative.
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    The completed SDSS-IV extended Baryon Oscillation Spectroscopic Survey: large-scale structure catalogues and measurement of the isotropic BAO between redshift 0.6 and 1.1 for the Emission Line Galaxy Sample (2020)
    Oxford University Press
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    Publication Date: 2020-10-28
    Description: We present the Emission Line Galaxy (ELG) sample of the extended Baryon Oscillation Spectroscopic Survey from the Sloan Digital Sky Survey IV Data Release 16. We describe the observations and redshift measurement for the 269 243 observed ELG spectra, and then present the large-scale structure catalogues, used for the cosmological analysis, and made of 173 736 reliable spectroscopic redshifts between 0.6 and 1.1. We perform a spherically averaged baryon acoustic oscillations (BAO) measurement in configuration space, with density field reconstruction: the data two-point correlation function shows a feature consistent with that of the BAO, the BAO model being only weakly preferred over a model without BAO (Δχ2 〈 1). Fitting a model constrained to have a BAO feature provides a 3.2 per cent measurement of the spherically averaged BAO distance DV(zeff)/rdrag = 18.23 ± 0.58 at the effective redshift zeff = 0.845.
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    Search for globular clusters associated with the Milky Way dwarf galaxies using Gaia DR2 (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: We report the result of searching for globular clusters (GCs) around 55 Milky Way (MW) satellite dwarf galaxies within the distance of 450 kpc from the Galactic Centre except for the Large and Small Magellanic Clouds and the Sagittarius dwarf. For each dwarf, we analyse the stellar distribution of sources in Gaia DR2, selected by magnitude, proper motion, and source morphology. Using the kernel density estimation of stellar number counts, we identify 11 possible GC candidates. Cross-matched with existing imaging data, all 11 objects are known either GCs or galaxies and only Fornax GC 1–6 among them are associated with the targeted dwarf galaxy. Using simulated GCs, we calculate the GC detection limit $M_{ m V}^{ m lim}$ that spans the range from $M_{ m V}^{ m lim}sim -7$ for distant dwarfs to $M_{ m V}^{ m lim}sim 0$ for nearby systems. Assuming a Gaussian GC luminosity function, we compute that the completeness of the GC search is above 90 per cent for most dwarf galaxies. We construct the 90 per cent credible intervals/upper limits on the GC specific frequency SN of the MW dwarf galaxies: 12 〈 SN 〈 47 for Fornax, SN 〈 20 for the dwarfs with −12 〈 MV 〈 −10, SN 〈 30 for the dwarfs with −10 〈 MV 〈 −7, and SN 〈 90 for the dwarfs with MV 〉 −7. Based on SN, we derive the probability of galaxies hosting GCs given their luminosity, finding that the probability of galaxies fainter than MV = −9 to host GCs is lower than 0.1.
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    Linking Hydrology and Dissolved Organic Matter Characteristics in a Subtropical Wetland: A Long‐Term Study of the Florida Everglades (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
    Published by American Geophysical Union
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    Observation of an inertial-range energy cascade within a reconnection jet in the Earth’s magnetotail (2020)
    Oxford University Press
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    Publication Date: 2020-10-30
    Description: The Earth’s magnetotail region provides a unique environment for the study of plasma turbulence. We investigate the turbulence developed in an exhaust produced by magnetic reconnection in the terrestrial magnetotail region. Magnetic and velocity spectra show broad-band fluctuations corresponding to the inertial range, with Kolmorogov scaling of −5/3, indicative of a well-developed turbulent cascade. We examine the mixed, third-order structure functions, and obtain a linear scaling in the inertial range. This linear scaling of the third-order structure functions implies a scale-invariant cascade of energy through the inertial range. A Politano–Pouquet third-order analysis gives an estimate of the incompressive energy transfer rate of ${sim}10^{7}~mathrm{J, kg^{-1}, s^{-1}}$. This is four orders of magnitude higher than the values typically measured in the 1-au solar wind, suggesting that the turbulence cascade plays an important role as a pathway of energy dissipation during reconnection events in the tail region.
    Print ISSN: 1745-3925
    Electronic ISSN: 1745-3933
    Topics: Physics
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    Dissolved Organic Nitrogen Cycling in the South China Sea From an Isotopic Perspective (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Fires Represent an Important Source of Carbon Emissions in Mexico (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    PED in 2021: a major update of the protein ensemble database for intrinsically disordered proteins (2020)
    Oxford University Press
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    Publication Date: 2020-12-10
    Description: The Protein Ensemble Database (PED) (https://proteinensemble.org), which holds structural ensembles of intrinsically disordered proteins (IDPs), has been significantly updated and upgraded since its last release in 2016. The new version, PED 4.0, has been completely redesigned and reimplemented with cutting-edge technology and now holds about six times more data (162 versus 24 entries and 242 versus 60 structural ensembles) and a broader representation of state of the art ensemble generation methods than the previous version. The database has a completely renewed graphical interface with an interactive feature viewer for region-based annotations, and provides a series of descriptors of the qualitative and quantitative properties of the ensembles. High quality of the data is guaranteed by a new submission process, which combines both automatic and manual evaluation steps. A team of biocurators integrate structured metadata describing the ensemble generation methodology, experimental constraints and conditions. A new search engine allows the user to build advanced queries and search all entry fields including cross-references to IDP-related resources such as DisProt, MobiDB, BMRB and SASBDB. We expect that the renewed PED will be useful for researchers interested in the atomic-level understanding of IDP function, and promote the rational, structure-based design of IDP-targeting drugs.
    Print ISSN: 0305-1048
    Electronic ISSN: 1362-4962
    Topics: Biology
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    The Metal Abundances across Cosmic Time (MACT) Survey. III – The relationship between stellar mass and star formation rate in extremely low-mass galaxies (2020)
    Oxford University Press
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    Publication Date: 2020-10-31
    Description: Extragalactic studies have demonstrated that there is a moderately tight (≈0.3 dex) relationship between galaxy stellar mass (M⋆) and star formation rate (SFR) that holds for star-forming galaxies at M⋆ ∼ 3 × 108–1011 M⊙, i.e. the ‘star formation main sequence’. However, it has yet to be determined whether such a relationship extends to even lower mass galaxies, particularly at intermediate or higher redshifts. We present new results using observations for 714 narrow-band H α-selected galaxies with stellar masses between 106 and 1010 M⊙ (average of 108.2 M⊙) at z ≈ 0.07–0.5. These galaxies have sensitive ultraviolet (UV) to near-infrared photometric measurements and optical spectroscopy. The latter allows us to correct our H α SFRs for dust attenuation using Balmer decrements. Our study reveals that: (1) for low-SFR galaxies, our H α SFRs systematically underpredict compared to far-UV measurements, consistent with other studies; (2) at a given stellar mass (≈108 M⊙), log (specific SFR) evolves as A log (1 + z) with A = 5.26 ± 0.75, and on average, specific SFR increases with decreasing stellar mass; (3) the SFR–M⋆ relation holds for galaxies down to ∼106 M⊙ (∼1.5 dex below previous studies), and over lookback times of up to 5 Gyr, follows a redshift-dependent relation of log (SFR) ∝ α log (M⋆/M⊙) + β z with α = 0.60 ± 0.01 and β = 1.86 ± 0.07; and (4) the observed dispersion in the SFR–M⋆ relation at low stellar masses is ≈0.3 dex. Accounting for survey selection effects using simulated galaxies, we estimate that the true dispersion is ≈0.5 dex.
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    Final design and on-sky testing of the iLocater SX acquisition camera: broad-band single-mode fibre coupling (2020)
    Oxford University Press
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    Publication Date: 2020-10-30
    Description: Enabling efficient injection of light into single-mode fibres (SMFs) is a key requirement in realizing diffraction-limited astronomical spectroscopy on ground-based telescopes. SMF-fed spectrographs, facilitated by the use of adaptive optics (AO), offer distinct advantages over comparable seeing-limited designs, including higher spectral resolution within a compact and stable instrument volume, and a telescope independent spectrograph design. iLocater is an extremely precise radial velocity (EPRV) spectrograph being built for the Large Binocular Telescope (LBT). We have designed and built the front-end fibre injection system, or acquisition camera, for the SX (left) primary mirror of the LBT. The instrument was installed in 2019 and underwent on-sky commissioning and performance assessment. In this paper, we present the instrument requirements, acquisition camera design, as well as results from first-light measurements. Broad-band SMF coupling in excess of 35 per cent (absolute) in the near-infrared (0.97–1.31 ${mu { m m}}$) was achieved across a range of target magnitudes, spectral types, and observing conditions. Successful demonstration of on-sky performance represents both a major milestone in the development of iLocater and in making efficient ground-based SMF-fed astronomical instruments a reality.
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    A targeted search for repeating fast radio bursts associated with gamma-ray bursts (2020)
    Oxford University Press
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    Publication Date: 2020-10-29
    Description: The origin of fast radio bursts (FRBs) still remains a mystery, even with the increased number of discoveries in the last 3 yr. Growing evidence suggests that some FRBs may originate from magnetars. Large, single-dish telescopes such as Arecibo Observatory (AO) and Green Bank Telescope (GBT) have the sensitivity to detect FRB 121102-like bursts at gigaparsec distances. Here, we present searches using AO and GBT that aimed to find potential radio bursts at 11 sites of past gamma-ray bursts that show evidence for the birth of a magnetar. We also performed a search towards GW170817, which has a merger remnant whose nature remains uncertain. We place $10sigma$ fluence upper limits of ≈0.036 Jy ms at 1.4 GHz and ≈0.063 Jy ms at 4.5 GHz for the AO data and fluence upper limits of ≈0.085 Jy ms at 1.4 GHz and ≈0.098 Jy ms at 1.9 GHz for the GBT data, for a maximum pulse width of ≈42 ms. The AO observations had sufficient sensitivity to detect any FRB of similar luminosity to the one recently detected from the Galactic magnetar SGR 1935+2154. Assuming a Schechter function for the luminosity function of FRBs, we find that our non-detections favour a steep power-law index (α ≲ −1.1) and a large cut-off luminosity (L0 ≳ 1041 erg s−1).
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    Cleaning our own dust: simulating and separating galactic dust foregrounds with neural networks (2020)
    Oxford University Press
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    Publication Date: 2020-10-30
    Description: Separating galactic foreground emission from maps of the cosmic microwave background (CMB) and quantifying the uncertainty in the CMB maps due to errors in foreground separation are important for avoiding biases in scientific conclusions. Our ability to quantify such uncertainty is limited by our lack of a model for the statistical distribution of the foreground emission. Here, we use a deep convolutional generative adversarial network (DCGAN) to create an effective non-Gaussian statistical model for intensity of emission by interstellar dust. For training data we use a set of dust maps inferred from observations by the Planck satellite. A DCGAN is uniquely suited for such unsupervised learning tasks as it can learn to model a complex non-Gaussian distribution directly from examples. We then use these simulations to train a second neural network to estimate the underlying CMB signal from dust-contaminated maps. We discuss other potential uses for the trained DCGAN, and the generalization to polarized emission from both dust and synchrotron.
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    Turbulent dissipation, CH+ abundance, H2 line luminosities, and polarization in the cold neutral medium (2020)
    Oxford University Press
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    Publication Date: 2020-10-31
    Description: In the cold neutral medium, high out-of-equilibrium temperatures are created by intermittent dissipation processes, including shocks, viscous heating, and ambipolar diffusion. The high-temperature excursions are thought to explain the enhanced abundance of CH+ observed along diffuse molecular sightlines. Intermittent high temperatures should also have an impact on H2 line luminosities. We carry out simulations of magnetohydrodynamic (MHD) turbulence in molecular clouds including heating and cooling, and post-process them to study H2 line emission and hot-gas chemistry, particularly the formation of CH+. We explore multiple magnetic field strengths and equations of state. We use a new H2 cooling function for $n_{ext{H}}le 10^5, {ext{cm}}^{-3}$, $Tle 5000, {ext{K}}$, and variable H2 fraction. We make two important simplifying assumptions: (i) the H2/H fraction is fixed everywhere and (ii) we exclude from our analysis regions where the ion–neutral drift velocity is calculated to be greater than 5 km s−1. Our models produce H2 emission lines in accord with many observations, although extra excitation mechanisms are required in some clouds. For realistic root-mean-square (rms) magnetic field strengths (≈10 μG) and velocity dispersions, we reproduce observed CH+ abundances. These findings contrast with those of Valdivia et al. (2017) Comparison of predicted dust polarization with observations by Planck suggests that the mean field is ≳5 µG, so that the turbulence is sub-Alfvénic. We recommend future work treating ions and neutrals as separate fluids to more accurately capture the effects of ambipolar diffusion on CH+ abundance.
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    Modelling long-period variables – II. Fundamental mode pulsation in the non-linear regime (2020)
    Oxford University Press
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    Publication Date: 2020-10-29
    Description: Long-period variability in luminous red giants has several promising applications, all of which require models able to accurately predict pulsation periods. Linear pulsation models have proven successful in reproducing the observed periods of overtone modes in evolved red giants, but they fail to accurately predict their fundamental mode (FM) periods. Here, we use a 1D hydrodynamic code to investigate the long-period variability of M-type asymptotic giant branch stars in the non-linear regime. We examine the period and stability of low-order radial pulsation modes as a function of mass and radius, and find overtone mode periods in complete agreement with predictions from linear pulsation models. In contrast, non-linear models predict an earlier onset of dominant FM pulsation, and shorter periods at large radii. Both features lead to a substantially better agreement with observations that we verify against OGLE and Gaia data for the Magellanic Clouds. We provide simple analytical relations describing the non-linear FM period–mass–radius relation. Differences with respect to linear predictions originate from the readjustment of the envelope structure induced by large-amplitude pulsation. We investigate the impact of turbulent viscosity on linear and non-linear pulsation, and probe possible effects of varying metallicity and carbon abundance.
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    Evolution of timing and spectral characteristics of 4U 1901+03 during its 2019 outburst using the Swift and NuSTAR observatories (2020)
    Oxford University Press
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    Publication Date: 2020-10-29
    Description: We report the results from a detailed timing and spectral study of a transient X-ray pulsar, 4U 1901+03 during its 2019 outburst. We performed broadband spectroscopy in the 1–70 $ m keV$ energy band using four observations made with Swift and NuSTAR at different intensity levels. Our timing results reveal the presence of highly variable pulse profiles dependent on both luminosity and energy. Our spectroscopy results showed the presence of a cyclotron resonance scattering feature (CRSF) at ∼ 30 keV. This feature at 30 keV is highly luminosity and pulse phase dependent. Phase-averaged spectra during the last two observations, made close to the declining phase of the outburst, showed the presence of this feature at around $30~ m {keV}$. The existence of CRSF at 30 keV during these observations is well supported by an abrupt change in the shape of pulse profiles found close to this energy. We also found that 30 keV feature was significantly detected in the pulse phase-resolved spectra of observations made at relatively high luminosities. Moreover, all spectral fit parameters showed a strong pulse phase dependence. In line with the previous findings, an absorption feature at around $10~ m {keV}$ is significantly observed in the phase-averaged X-ray spectra of all observations and also showed a strong pulse phase dependence.
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    Fundamental Plane of BOSS galaxies: correlations with galaxy properties, density field, and impact on RSD measurements (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: Fundamental Plane (FP) of elliptical galaxies can be used to predict the intrinsic size of galaxies and has a number of plausible application to study cosmology and galaxy physics. We present a detailed analysis of the FP of the SDSS-III BOSS LOWZ and CMASS galaxies. For the standard FP, we find a strong redshift evolution for the mean residual and show that it is primarily driven by the redshift evolution of the surface brightness of the galaxies. After correcting for the redshift evolution, the FP residuals are strongly correlated with the galaxy properties and some observational systematics. We show that the variations in the FP between the central and satellite galaxies, which have been observed in the literature, can primarily be explained by the correlation of the FP with the galaxy luminosity. We also measure the cross-correlations of the FP residuals with the galaxy density field. The amplitude of the cross-correlations depends on the galaxy properties and environment with brighter and redder galaxies showing stronger correlation. In general, galaxies in denser environments (higher galaxy bias) show stronger correlations. We also compare FP amplitude with the amplitudes of intrinsic alignments (IA) of galaxy shapes, finding the two to be correlated. Finally, using the FP residuals, we also study the impact of IA on the constraint of growth rate using redshift-space distortions (RSD). We do not observe any significant trends in measurements of the growth rate f as function of the amplitude of FP–density correlations, resulting in null detection of the effects of IA on the RSD measurements.
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    Similar but different: the varied landscape of Onfp/Oef stars variability (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: The Oef category gathers rapidly rotating and evolved O-stars displaying a centrally reversed He ii λ 4686 emission line. The origin of the variability of their photospheric and wind spectral lines is debated, with rotational modulation or pulsations as the main contenders. To shed new light on this question, we analysed high-quality and high-cadence Transiting Exoplanet Survey Satellite photometric time series for five Oef stars. We also collected a new time series of spectra for one target (λ Cep) which had been the subject of specific debates in the last years. These observations reveal the variety of Oef behaviours. While space-based photometric data reveal substantial red noise components in all targets, only ζ Pup seems to display a long-lived periodicity. In our sample, stars exhibit a dominant signal at low frequencies but it appears relatively short-lived. This is reminiscent of rotational modulations by transient photospheric spots, though this scenario is challenged by the case of HD 14 442, whose 1.230 d−1 signal significantly exceeds the critical rotational frequency. In parallel, no evidence of persistent p mode non-radial pulsations is found in either photometry or spectroscopy of the stars, only temporary excitation of g mode pulsations could offer an alternative explanation for the dominant signals. Finally, the revised luminosities of the stars using GAIA-DR2 show that they are not all supergiants as ζ Pup. The question then arises whether the Oef peculiarity denotes a homogeneous class of objects after all.
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    Bayesian AGN Decomposition Analysis for SDSS spectra: a correlation analysis of [O iii] λ5007 outflow kinematics with AGN and host galaxy properties (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: We present Bayesian active galactic nucleus (AGN) Decomposition Analysis for Sloan Digital Sky Survey (SDSS) Spectra, an open source spectral analysis code designed for automatic detailed deconvolution of AGN and host galaxy spectra, implemented in python, and designed for the next generation of large-scale surveys. The code simultaneously fits all spectral components, including power-law continuum, stellar line-of-sight velocity distribution, Fe ii emission, as well as forbidden (narrow), permitted (broad), and outflow emission line features, all performed using Markov chain Monte Carlo to obtain robust uncertainties and autocorrelation analysis to assess parameter convergence. Our code also utilizes multiprocessing for batch fitting large samples of spectra while efficiently managing memory and computation resources and is currently being used in a cluster environment to fit thousands of SDSS spectra. We use our code to perform a correlation analysis of 63 SDSS type 1 AGNs with evidence of strong non-gravitational outflow kinematics in the [O iii] λ5007 emission feature. We confirm findings from previous studies that show the core of the [O iii] profile is a suitable surrogate for stellar velocity dispersion σ*, however there is evidence that the core experiences broadening that scales with outflow velocity. We find sufficient evidence that σ*, [O iii] core dispersion, and the non-gravitational outflow dispersion of the [O iii] profile form a plane whose fit results in a scatter of ∼0.1 dex. Finally, we discuss the implications, caveats, and recommendations when using the [O iii] dispersion as a surrogate for σ* for the MBH−σ* relation.
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    iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data (2020)
    Oxford University Press
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    Publication Date: 2020-05-20
    Description: Whole exome sequencing (WES) is a powerful approach for discovering sequence variants in cancer cells but its time effectiveness is limited by the complexity and issues of WES data analysis. Here we present iWhale, a customizable pipeline based on Docker and SCons, reliably detecting somatic variants by three complementary callers (MuTect2, Strelka2 and VarScan2). The results are combined to obtain a single variant call format file for each sample and variants are annotated by integrating a wide range of information extracted from several reference databases, ultimately allowing variant and gene prioritization according to different criteria. iWhale allows users to conduct a complex series of WES analyses with a powerful yet customizable and easy-to-use tool, running on most operating systems (macOs, GNU/Linux and Windows). iWhale code is freely available at https://github.com/alexcoppe/iWhale and the docker image is downloadable from https://hub.docker.com/r/alexcoppe/iwhale.
    Print ISSN: 1467-5463
    Electronic ISSN: 1477-4054
    Topics: Biology , Computer Science
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    The mid-infrared Leavitt law for classical Cepheids in the Magellanic Clouds (2020)
    Oxford University Press
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    Publication Date: 2020-10-27
    Description: The Cepheid Leavitt Law (LL), also known as the Period–Luminosity relation, is a crucial tool for assembling the cosmic distance ladder. By combining data from the OGLE-IV catalogue with mid-infrared photometry from the Spitzer Space Telescope, we have determined the 3.6 and 4.5 $mu$m LLs for the Magellanic Clouds using ∼5000 fundamental-mode classical Cepheids. Mean magnitudes were determined using a Monte Carlo Markov Chain (MCMC) template fitting procedure, with template light curves constructed from a subsample of these Cepheids with fully phased, well-sampled light curves. The dependence of the Large Magellanic Cloud LL coefficients on various period cuts was tested, in addition to the linearity of the relationship. The zero-point of the LL was calibrated using the parallaxes of Milky Way Cepheids from the Hubble Space Telescope and Gaia Data Release 2. Our final calibrated relations are M[3.6] = −3.246(±0.008)(log (P) − 1.0) − 5.784(±0.030) and M[4.5] = −3.162(±0.008)(log (P) − 1.0) − 5.751(±0.030).
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    Exploring the hot gaseous halo around an extremely massive and relativistic jet launching spiral galaxy with XMM−Newton (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-31
    Description: We present a deep XMM−Newton observation of the extremely massive, rapidly rotating, relativistic-jet-launching spiral galaxy 2MASX J23453268−0449256. Diffuse X-ray emission from the hot gaseous halo around the galaxy is robustly detected out to a radius of 160 kpc, corresponding roughly to 35 per cent of the virial radius (≈450 kpc). We fit the X-ray emission with the standard isothermal β model, and it is found that the enclosed gas mass within 160 kpc is $1.15_{-0.24}^{+0.22} imes 10^{11} , m {M}_{odot }$. Extrapolating the gas mass profile out to the virial radius, the estimated gas mass is $8.25_{-1.77}^{+1.62} imes 10^{11} , m {M}_{odot }$, which makes up roughly 65 per cent of the total baryon mass content of the galaxy. When the stellar mass is considered and accounting for the statistical and systematic uncertainties, the baryon mass fraction within the virial radius is $0.121_{-0.043}^{+0.043}$, in agreement with the universal baryon fraction. The baryon mass fraction is consistent with all baryons falling within r200, or with only half of the baryons falling within r200. Similar to the massive spiral galaxies NGC 1961 and NGC 6753, we find a low value for the metal abundance of ≈ 0.1 Z⊙, which appears uniform with radius. We also detect diffuse X-ray emission associated with the northern and southern lobes, possibly attributed to inverse Compton scattering of cosmic microwave background photons. The estimated energy densities of the electrons and magnetic field in these radio lobes suggest that they are electron-dominated by a factor of 10−200, depending on the choice of the lower cut-off energy of the electron spectrum.
    Print ISSN: 0035-8711
    Electronic ISSN: 1365-2966
    Topics: Physics
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    The value of the Hubble–Lemaître constant queried by Type Ia supernovae: a journey from the Calán-Tololo Project to the Carnegie Supernova Program (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-29
    Description: We assess the robustness of the two highest rungs of the ‘cosmic distance ladder’ for Type Ia supernovae and the determination of the Hubble–Lemaître constant. In this analysis, we hold fixed Rung 1 as the distance to the LMC determined to 1 per cent using detached eclipsing binary stars. For Rung 2, we analyse two methods, the TRGB and Cepheid distances for the luminosity calibration of Type Ia supernovae in nearby galaxies. For Rung 3, we analyse various modern digital supernova samples in the Hubble flow, such as the Calán-Tololo, CfA, CSP, and Supercal data sets. This metadata analysis demonstrates that the TRGB calibration yields smaller H0 values than the Cepheid calibration, a direct consequence of the systematic difference in the distance moduli calibrated from these two methods. Selecting the three most independent possible methodologies/bandpasses (B, V, J), we obtain H0 = 69.9 ± 0.8 and H0= 73.5 ± 0.7 $, m km, s^{-1} , Mpc^{-1}$from the TRGB and Cepheid calibrations, respectively. Adding in quadrature the systematic uncertainty in the TRGB and Cepheid methods of 1.1 and 1.0 $, m km, s^{-1} , Mpc^{-1}$, respectively, this subset reveals a significant 2.0σ systematic difference in the calibration of Rung 2. If Rung 1 and Rung 2 are held fixed, the different formalisms developed for standardizing the supernova peak magnitudes yield consistent results, with a standard deviation of 1.5 $, m km, s^{-1} , Mpc^{-1}$, that is, Type Ia supernovae are able to anchor Rung 3 with 2 per cent precision. This study demonstrates that Type Ia supernovae have provided a remarkably robust calibration of R3 for over 25 yr.
    Print ISSN: 0035-8711
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    Black hole spin in X-ray binaries: giving uncertainties an f (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-27
    Description: The two established techniques for measuring black hole spin in X-ray binaries often yield conflicting results, which must be resolved before either method may be deemed robust. In practice, black hole spin measurements based on fitting the accretion disc continuum effectively do not marginalize over the colour-correction factor fcol. This factor parametrizes spectral hardening of the disc continuum by the disc atmosphere, whose true properties are poorly constrained. We incorporate reasonable systematic uncertainties in fcol into the eight (non-maximal) black hole spin measurements vetted by the disc continuum fitting community. In most cases, an fcol uncertainty of ±0.2–0.3 dominates the black hole spin error budget. We go on to demonstrate that plausible departures in fcol values from those adopted by the disc continuum fitting practitioners can bring the discrepant black hole spins into agreement with those from iron line modelling. Systematic uncertainties in fcol, such as the effects of strong magnetization, should be better understood before dismissing their potentially dominant impact on the black hole spin error budget.
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    Probing the CGM of low-redshift dwarf galaxies using FIRE simulations (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-27
    Description: Observations of ultraviolet (UV) metal absorption lines have provided insight into the structure and composition of the circumgalactic medium (CGM) around galaxies. We compare these observations with the low-redshift (z ≤ 0.3) CGM around dwarf galaxies in high-resolution cosmological zoom-in runs in the FIRE-2 (Feedback In Realistic Environments) simulation suite. We select simulated galaxies that match the halo mass, stellar mass, and redshift of the observed samples. We produce absorption measurements using trident for UV transitions of C iv, O vi, Mg ii, and Si iii. The FIRE equivalent width (EW) distributions and covering fractions for the C iv ion are broadly consistent with observations inside 0.5Rvir, but are underpredicted for O vi, Mg ii, and Si iii. The absorption strengths of the ions in the CGM are moderately correlated with the masses and star formation activity of the galaxies. The correlation strengths increase with the ionization potential of the ions. The structure and composition of the gas from the simulations exhibit three zones around dwarf galaxies characterized by distinct ion column densities: the discy interstellar medium, the inner CGM (the wind-dominated regime), and the outer CGM (the IGM accretion-dominated regime). We find that the outer CGM in the simulations is nearly but not quite supported by thermal pressure, so it is not in hydrostatic equilibrium, resulting in halo-scale bulk inflow and outflow motions. The net gas inflow rates are comparable to the star formation rate of the galaxy, but the bulk inflow and outflow rates are greater by an order of magnitude, with velocities comparable to the virial velocity of the halo. These roughly virial velocities (${sim } 100 , m km, s^{-1}$) produce large EWs in the simulations. This supports a picture for dwarf galaxies in which the dynamics of the CGM at large scales are coupled to the small-scale star formation activity near the centre of their haloes.
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    Evaluating the Potential of Legumes to Mitigate N 2 O Emissions From Permanent Grassland Using Process‐Based Models (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-11-26
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    EPIC 216747137: a new HW Vir eclipsing binary with a massive sdOB primary and a low-mass M-dwarf companion (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-27
    Description: EPIC 216747137 is a new HW Virginis system discovered by the Kepler spacecraft during its K2 ‘second life’. Like the other HW Vir systems, EPIC 216747137 is a post-common-envelope eclipsing binary consisting of a hot subluminous star and a cool low-mass companion. The short orbital period of 3.87 h produces a strong reflection effect from the secondary (∼9 per cent in the R band). Together with AA Dor and V1828 Aql, EPIC 216747137 belongs to a small subgroup of HW Vir systems with a hot evolved sdOB primary. We find the following atmospheric parameters for the hot component: Teff = 40400 ± 1000 K, log g = 5.56 ± 0.06, and log(N(He)/N(H)) = −2.59 ± 0.05. The sdOB rotational velocity v sin  i = 51 ± 10 km s−1 implies that the stellar rotation is slower than the orbital revolution and the system is not synchronized. When we combine photometric and spectroscopic results with the Gaia parallax, the best solution for the system corresponds to a primary with a mass of about 0.62 M⊙ close to, and likely beyond, the central helium exhaustion, while the cool M-dwarf companion has a mass of about 0.11 M⊙.
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    Wolf–Rayet stars in the Antennae unveiled by MUSE (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-27
    Description: We present the analysis of archival Very Large Telescope (VLT) Multi-Unit Spectroscopic Explorer (MUSE) observations of the interacting galaxies NGC 4038/39 (a.k.a. the Antennae) at a distance of 18.1 Mpc. Up to 38 young star-forming complexes with evident contribution from Wolf–Rayet (WR) stars are unveiled. We use publicly available templates of Galactic WR stars in conjunction with available photometric extinction measurements to quantify and classify the WR population in each star-forming region, on the basis of its nearly Solar oxygen abundance. The total estimated number of WR stars in the Antennae is 4053 ± 84, of which there are 2021 ± 60 WNL and 2032 ± 59 WC-types. Our analysis suggests a global WC to WN-type ratio of 1.01 ± 0.04, which is consistent with the predictions of the single star evolutionary scenario in the most recent bpass stellar population synthesis models.
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    The stratified disc wind of MCG-03-58-007 (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-27
    Description: Past Suzaku, XMM–Newton, and NuSTAR observations of the nearby (z = 0.03233) bright Seyfert 2 galaxy MCG-03-58-007 revealed the presence of two deep and blue-shifted iron K-shell absorption line profiles. These could be explained with the presence of two phases of a highly ionized, high column density accretion disc wind outflowing with vout1 ∼ −0.1c and vout2 ∼ −0.2c. Here we present two new observations of MCG-03-58-007: one was carried out in 2016 with Chandra and one in 2018 with Swift. Both caught MCG-03-58-007 in a brighter state ($F_{{mathrm{2}-10, keV}} sim 4 imes 10^{-12}$ erg cm−2 s−1) confirming the presence of the fast disc wind. The multi-epoch observations of MCG-03-58-007 covering the period from 2010 to 2018 were then analysed. These data show that the lower velocity component outflowing with vout1 ∼ −0.072 ± 0.002c is persistent and detected in all the observations, although it is variable in column density in the range NH ∼ 3–8 × 1023 cm−2. In the 2016 Swift observation we detected again the second faster component outflowing with vout2 ∼ −0.2c, with a column density ($N_{mbox{H}}=7.0^{+5.6}_{-4.1}imes 10^{23}$ cm−2), similar to that seen during the Suzaku observation. However during the Chandra observation 2 yr earlier, this zone was not present (NH 〈 1.5 × 1023 cm−2), suggesting that this faster zone is intermittent. Overall the multi-epochs observations show that the disc wind in MCG-03-58-007 is not only powerful, but also extremely variable, hence placing MCG-03-58-007 among unique disc winds such as the one seen in the famous QSO PDS456. One of the main results of this investigation is the consideration that these winds could be extremely variable, sometime appearing and sometime disappearing; thus to reach solid and firm conclusions about their energetics multiple observations are mandatory.
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    Sapling: accelerating suffix array queries with learned data models (2020)
    Oxford University Press
    Details
    Publication Date: 2020-10-27
    Description: Motivation As genomic data becomes more abundant, efficient algorithms and data structures for sequence alignment become increasingly important. The suffix array is a widely used data structure to accelerate alignment, but the binary search algorithm used to query, it requires widespread memory accesses, causing a large number of cache misses on large datasets. Results Here, we present Sapling, an algorithm for sequence alignment, which uses a learned data model to augment the suffix array and enable faster queries. We investigate different types of data models, providing an analysis of different neural network models as well as providing an open-source aligner with a compact, practical piecewise linear model. We show that Sapling outperforms both an optimized binary search approach and multiple widely used read aligners on a diverse collection of genomes, including human, bacteria and plants, speeding up the algorithm by more than a factor of two while adding
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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    Supporting Ecosystem-based Fisheries Management in meeting multiple objectives for sustainable use of coral reef ecosystems (2020)
    Oxford University Press
    Details
    Publication Date: 2020-11-24
    Description: Ecosystem-based Fisheries Management is a holistic management approach that integrates the dynamics of an entire ecosystem, including societal dimensions. However, this approach seldom lives up to its promise because economic and social objectives are rarely specified. To fill this gap, we explored how an ecosystem model could better integrate economic and social objectives, using the coral reef ecosystem around Hawai`i as a case study. After meeting with stakeholders and conducting a literature review of policy/strategy documents, we identified societal and ecological objectives and associated performance indicators for which data existed. We developed a social–ecological system conceptual framework to illustrate the relationships between ecological and social state components. This framework was the foundation for the development of the final social–ecological system model which we simulated using an Ecopath with Ecosim model. We simulated four gear/species restrictions for the reef-based fishery, two fishing scenarios associated with the opening of hypothetical no-take Marine Protected Areas for the deepwater-based fishery, and a Constant Effort (No Action) scenario. Despite limitations in the model, our approach shows that when social and economic objectives and social–ecological relationships are defined, we can quantify the trade-offs among the identified societal objectives to support managers in choosing among alternative interventions.
    Print ISSN: 1054-3139
    Electronic ISSN: 1095-9289
    Topics: Biology , Geosciences , Physics
    Published by Oxford University Press on behalf of International Council for the Exploration of the Sea.
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    Seasonal Variations in Dissolved Carbon Inventory and Fluxes in a Mangrove‐Dominated Estuary (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
    Print ISSN: 0886-6236
    Electronic ISSN: 1944-9224
    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Carbon Dioxide Partial Pressure and Emission Throughout the Scandinavian Stream Network (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Isopycnal Transport and Scavenging of 230 Th and 231 Pa in the Pacific Southern Ocean (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-11-25
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Global N 2 O Emissions From Cropland Driven by Nitrogen Addition and Environmental Factors: Comparison and Uncertainty Analysis (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-11-26
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Climate‐Driven Variability and Trends in Plant Productivity Over Recent Decades Based on Three Global Products (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Sedimentary Nutrient Supply in Productive Hot Spots off the West Antarctic Peninsula Revealed by Silicon Isotopes (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Spatial and Temporal Variability of Diffusive CO 2 and CH 4 Fluxes From the Amazonian Reservoir Petit‐Saut (French Guiana) Reveals the Importance of Allochthonous Inputs for Long‐Term C Emissions (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Seasonal Carbon Dynamics in the Near‐Global Ocean (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    The Importance of the Phytoplankton “Middle Class” to Ocean Net Community Production (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Controls on the 14 C Content of Dissolved and Particulate Organic Carbon Mobilized Across the Mackenzie River Basin, Canada (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    The distribution of neutral hydrogen in the colour–magnitude plane of galaxies (2020)
    Oxford University Press
    Details
    Publication Date: 2020-01-01
    Description: We present the conditional H i (neutral hydrogen) mass function (HIMF) conditioned on observed optical properties, Mr (r-band absolute magnitude), and Cur (u − r colour), for a sample of 7709 galaxies from Arecibo Legacy Fast ALFA (40 per cent data release – α.40) which overlaps with a common volume in SDSS DR7. Based on the conditional HIMF, we find that the luminous red, luminous blue, and faint blue populations dominate the total HIMF at the high-mass end, knee, and the low-mass end, respectively. We use the conditional HIMF to derive the underlying distribution function of ΩH i (H i density parameter), p(ΩH i), in the colour–magnitude plane of galaxies. The distribution, p(ΩH i), peaks in the blue cloud at $mathit{ M_{{r}}}^{ext{max}}=-19.25, mathit{ C_{{ur}}}^{ext{max}}=1.44$ but is skewed. It has a long tail towards faint blue galaxies, and luminous red galaxies. We argue that p(ΩH i) can be used to reveal the underlying relation between cold gas, stellar mass, and the star formation rate in an unbiased way, that is, the derived relation does not suffer from survey or sample selection.
    Print ISSN: 1745-3925
    Electronic ISSN: 1745-3933
    Topics: Physics
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    Global Gridded Nitrogen Indicators: Influence of Crop Maps (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Southern Ocean Calcification Controls the Global Distribution of Alkalinity (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    Comparisons of Nutrients Exported From Greenlandic Glacial and Deglaciated Watersheds (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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    The Influence of Glacial Cover on Riverine Silicon and Iron Exports in Chilean Patagonia (2020)
    American Geophysical Union
    Details
    Publication Date: 2020-12-01
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    Topics: Biology , Chemistry and Pharmacology , Geography , Geosciences , Physics
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  • 66
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    Physics-based simulation of sequences with multiple main shocks in Central Italy (2020)
    Oxford University Press
    Details
    Publication Date: 2023-10-26
    Description: This article has been accepted for publication in Geophysical Journal International ©:The Author(s) 2020. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved.Uploaded in accordance with the publisher's self-archiving policy. All rights reserved
    Description: The application of a physics-based earthquake simulator to Central Italy allowed the compilation of a synthetic seismic catalogue spanning 100 000 yr, containing more than 300 000 M ≥ 4.0 simulated earthquakes, without the limitations that real catalogues suffer in terms of completeness, homogeneity and time duration. The seismogenic model upon which we applied the simulator code was derived from version 3.2.1 of the Database of Individual Seismogenic Sources (DISS; http://diss.rm.ingv.it/diss/), selecting, and modifying where appropriate, all the fault systems that are recognized in the portion of Central Italy considered in this study, with a total of 54 faults. Besides tectonic stress loading and static stress transfer as in the previous versions, the physical model on which the latest version of our simulation algorithm is based also includes the Rate and State constitutive law that helps to reproduce Omori’s law. One further improvement in our code was also the introduction of trapezoidalshaped faults that perform better than known faults. The resulting synthetic seismic catalogue exhibits typical magnitude, space and time features which are comparable to those in real observations. These features include the total seismic moment rate, the earthquake magnitude distribution, and the short- and medium-term earthquake clustering. A typical aspect of the observed seismicity in Central Italy, aswell as across thewhole Italian landmass and elsewhere, is the occurrence of earthquake sequences characterized by multiple main shocks of similar magnitude. These sequences are different from the usual earthquake clusters and aftershock sequences, since they have at least two main shocks of similar magnitude. Therefore, special attentionwas devoted to verifyingwhether the simulated catalogue includes this notable aspect. For this purpose, we developed a computer code especially for this work to count the number of multiple events contained in a seismic catalogue under a quantitative definition. We found that the last version of the simulator code produces a slightly larger number of multiple events than the previous versions, but not as large as in the real catalogue. A possible reason for this drawback is the lack of components such as pore-pressure changes due to fluid-diffusion in the adopted physical model.
    Description: Published
    Description: 526–542
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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    Observational and modeling evidence of seasonal trends in sediment-derived material inputs to the Chukchi Sea (2020)
    American Geophysical Union
    Details
    Publication Date: 2023-03-08
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(5), (2020): e2019JC016007, doi:10.1029/2019JC016007.
    Description: Benthic inputs of nutrients help support primary production in the Chukchi Sea and produce nutrient‐rich water masses that ventilate the halocline of the western Arctic Ocean. However, the complex biological and redox cycling of nutrients and trace metals make it difficult to directly monitor their benthic fluxes. In this study, we use radium‐228, which is a soluble radionuclide produced in sediments, and a numerical model of an inert, generic sediment‐derived tracer to study variability in sediment inputs to the Chukchi Sea. The 228Ra observations and modeling results are in general agreement and provide evidence of strong benthic inputs to the southern Chukchi Sea during the winter, while the northern shelf receives higher concentrations of sediment‐sourced materials in the spring and summer due to continued sediment‐water exchange as the water mass traverses the shelf. The highest tracer concentrations are observed near the shelfbreak and southeast of Hanna Shoal, a region known for high biological productivity and enhanced benthic biomass.
    Description: This study presents data from multiple Arctic expeditions over the past two decades, and we are indebted to the captains, crews, and scientific parties that made this data collection possible. This work was funded by NSF awards OCE‐1458305 to M. Charette, OCE‐1458424 to W. Moore, OCE‐1434085 to D. Kadko, PLR‐1504333 to R. Pickart, and OPP‐1822334 to M. Spall. Funding was also provided by National Oceanic and Atmospheric Administration Grant NA14‐OAR4320158 to R. Pickart. L. Kipp was supported by an Ocean Frontier Institute Postdoctoral Fellowship. Radium data used in this manuscript are available in Table S1.
    Description: 2020-10-27
    Keywords: Chukchi Sea ; Benthic flux ; Radium‐228 ; GEOTRACES
    Repository Name: Woods Hole Open Access Server
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    Taxonomy and systematics of Hyaloscyphaceae and Arachnopezizaceae (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 46, pp. 26-62
    Details
    Publication Date: 2024-04-09
    Description: The circumscription and composition of the Hyaloscyphaceae are controversial and based on poorly sampled or unsupported phylogenies. The generic limits within the hyaloscyphoid fungi are also very poorly understood. To address this issue, a robust five-gene Bayesian phylogeny (LSU, RPB1, RPB2, TEF-1α, mtSSU; 5521 bp) with a focus on the core group of Hyaloscyphaceae and Arachnopezizaceae is presented here, with comparative morphological and histochemical characters. A wide representative sampling of Hyaloscypha supports it as monophyletic and shows H. aureliella (subgenus Eupezizella) to be a strongly supported sister taxon. Reinforced by distinguishing morphological features, Eupezizella is here recognised as a separate genus, comprising E. aureliella, E. britannica, E. roseoguttata and E. nipponica (previously treated in Hyaloscypha). In a sister group to the Hyaloscypha-Eupezizella clade a new genus, Mimicoscypha, is created for three seldom collected and poorly understood species, M. lacrimiformis, M. mimica (nom. nov.) and M. paludosa, previously treated in Phialina, Hyaloscypha and Eriopezia, respectively. The Arachnopezizaceae is polyphyletic, because Arachnoscypha forms a monophyletic group with Polydesmia pruinosa, distant to Arachnopeziza and Eriopezia; in addition, Arachnopeziza variepilosa represents an early diverging lineage in Hyaloscyphaceae s.str. The hyphae originating from the base of the apothecia in Arachnoscypha are considered anchoring hyphae (vs a subiculum) and Arachnoscypha is excluded from Arachnopezizaceae. A new genus, Resinoscypha, is established to accommodate Arachnopeziza variepilosa and A. monoseptata, originally described in Protounguicularia. Mimicoscypha and Resinoscypha are distinguished among hyaloscyphoid fungi by long tapering multiseptate hairs that are not dextrinoid or glassy, in combination with ectal excipulum cells with deep amyloid nodules. Unique to Resinoscypha is cyanophilous resinous content in the hairs concentrated at the apex and septa. Small intensely amyloid nodules in the hairs are furthermore characteristic for Resinoscypha and Eupezizella. To elucidate species limits and diversity in Arachnopeziza, mainly from Northern Europe, we applied genealogical concordance phylogenetic species recognition (GCPSR) using analyses of individual datasets (ITS, LSU, RPB1, RPB2, TEF-1α) and comparative morphology. Eight species were identified as highly supported and reciprocally monophyletic. Four of these are newly discovered species, with two formally described here, viz. A. estonica and A. ptilidiophila. In addition, Belonium sphagnisedum, which completely lacks prominent hairs, is here combined in Arachnopeziza, widening the concept of the genus. Numerous publicly available sequences named A. aurata represent A. delicatula and the confusion between these two species is clarified. An additional four singletons are considered to be distinct species, because they were genetically divergent from their sisters. A highly supported five-gene phylogeny of Arachnopezizaceae identified four major clades in Arachnopeziza, with Eriopezia as a sister group. Two of the clades include species with a strong connection to bryophytes; the third clade includes species growing on bulky woody substrates and with pigmented exudates on the hairs; and the fourth clade species with hyaline exudates growing on both bryophytes and hardwood. A morphological account is given of the composition of Hyaloscyphaceae and Arachnopezizaceae, including new observations on vital and histochemical characters
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Arachnoscypha ; epibryophytic ; genealogical species ; Helotiales ; subiculum ; type studies
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    Diversity of Backusella (Mucoromycotina) in south-eastern Australia revealed through polyphasic taxonomy (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 46, pp. 1-25
    Details
    Publication Date: 2024-04-08
    Description: Here we explore the diversity of one morphologically distinguishable genus in the Mucoromycotina, Backusella, in south-eastern Australia. We isolated more than 200 strains from locations across the states of Victoria and Tasmania. Characterization of these strains using a combination of approaches including morphology, sucrose utilization and whole genome sequencing for 13 strains, revealed 10 new species. The genetic basis for interspecies variation in sucrose utilization was found to be the presence of a gene encoding an invertase enzyme. The genus Backusella is revised and a new key for species identification produced. Given that we have more than doubled the number of species in this genus, this work demonstrates that there may be considerable undiscovered species diversity in the early diverging fungal lineages.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Backusella ; genome sequencing ; invertase ; Mucorales ; new taxa ; polyphasic taxonomy ; zygospore
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    Illuminating type collections of nectriaceous fungi in Saccardo's fungarium (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 221-249
    Details
    Publication Date: 2024-04-28
    Description: Specimens of Nectria spp. and Nectriella rufofusca were obtained from the fungarium of Pier Andrea Saccardo, and investigated via a morphological and molecular approach based on MiSeq technology. ITS1 and ITS2 sequences were successfully obtained from 24 specimens identified as ‘Nectria’ sensu Saccardo (including 20 types) and from the type specimen of Nectriella rufofusca. For Nectria ambigua, N. radians and N. tjibodensis only the ITS1 sequence was recovered. On the basis of morphological and molecular analyses new nomenclatural combinations for Nectria albofimbriata, N. ambigua, N. ambigua var. pallens, N. granuligera, N. peziza subsp. reyesiana, N. radians, N. squamuligera, N. tjibodensis and new synonymies for N. congesta, N. flageoletiana, N. phyllostachydis, N. sordescens and N. tjibodensis var. crebrior are proposed. Furthermore, the current classification is confirmed for Nectria coronata, N. cyanostoma, N. dolichospora, N. illudens, N. leucotricha, N. mantuana, N. raripila and Nectriella rufofusca. This is the first time that these more than 100-yr-old specimens are subjected to molecular analysis, thereby providing important new DNA sequence data authentic for these names.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; ancient DNA ; Ascomycota ; Hypocreales ; Illumina ; ribosomal sequences ; Sordariomycetes
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    Fungal Planet description sheets: 1112–1181 (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 251-409
    Details
    Publication Date: 2024-04-30
    Description: Novel species of fungi described in this study include those from various countries as follows: Australia, Austroboletus asper on soil, Cylindromonium alloxyli on leaves of Alloxylon pinnatum, Davidhawksworthia quintiniae on leaves of Quintinia sieberi, Exophiala prostantherae on leaves of Prostanthera sp., Lactifluus lactiglaucus on soil, Linteromyces quintiniae (incl. Linteromyces gen. nov.) on leaves of Quintinia sieberi, Lophotrichus medusoides from stem tissue of Citrus garrawayi, Mycena pulchra on soil, Neocalonectria tristaniopsidis (incl. Neocalonectria gen. nov.) and Xyladictyochaeta tristaniopsidis on leaves of Tristaniopsis collina, Parasarocladium tasmanniae on leaves of Tasmannia insipida, Phytophthora aquae-cooljarloo from pond water, Serendipita whamiae as endophyte from roots of Eriochilus cucullatus, Veloboletus limbatus (incl. Veloboletus gen. nov.) on soil. Austria, Cortinarius glaucoelotus on soil. Bulgaria, Suhomyces rilaensis from the gut of Bolitophagus interruptus found on a Polyporus sp. Canada, Cantharellus betularum among leaf litter of Betula, Penicillium saanichii from house dust. Chile, Circinella lampensis on soil, Exophiala embothrii from rhizosphere of Embothrium coccineum. China, Colletotrichum cycadis on leaves of Cycas revoluta. Croatia, Phialocephala melitaea on fallen branch of Pinus halepensis. Czech Republic, Geoglossum jirinae on soil, Pyrenochaetopsis rajhradensis from dead wood of Buxus sempervirens. Dominican Republic, Amanita domingensis on litter of deciduous wood, Melanoleuca dominicana on forest litter. France, Crinipellis nigrolamellata (Martinique) on leaves of Pisonia fragrans, Talaromyces pulveris from bore dust of Xestobium rufovillosum infesting floorboards. French Guiana, Hypoxylon hepaticolor on dead corticated branch. Great Britain, Inocybe ionolepis on soil. India, Cortinarius indopurpurascens among leaf litter of Quercus leucotrichophora. Iran, Pseudopyricularia javanii on infected leaves of Cyperus sp., Xenomonodictys iranica (incl. Xenomonodictys gen. nov.) on wood of Fagus orientalis. Italy, Penicillium vallebormidaense from compost. Namibia, Alternaria mirabibensis on plant litter, Curvularia moringae and Moringomyces phantasmae (incl. Moringomyces gen. nov.) on leaves and flowers of Moringa ovalifolia, Gobabebomyces vachelliae (incl. Gobabebomyces gen. nov.) on leaves of Vachellia erioloba, Preussia procaviae on dung of Procavia capensis. Pakistan, Russula shawarensis from soil on forest floor. Russia, Cyberlindnera dauci from Daucus carota. South Africa, Acremonium behniae on leaves of Behnia reticulata, Dothiora aloidendri and Hantamomyces aloidendri (incl. Hantamomyces gen. nov.) on leaves of Aloidendron dichotomum, Endoconidioma euphorbiae on leaves of Euphorbia mauritanica, Eucasphaeria proteae on leaves of Protea neriifolia, Exophiala mali from inner fruit tissue of Malus sp., Graminopassalora geissorhizae on leaves of Geissorhiza splendidissima, Neocamarosporium leipoldtiae on leaves of Leipoldtia schultzii, Neocladosporium osteospermi on leaf spots of Osteospermum moniliferum, Neometulocladosporiella seifertii on leaves of Combretum caffrum, Paramyrothecium pituitipietianum on stems of Grielum humifusum, Phytopythium paucipapillatum from roots of Vitis sp., Stemphylium carpobroti and Verrucocladosporium carpobroti on leaves of Carpobrotus quadrifolius, Suttonomyces cephalophylli on leaves of Cephalophyllum pilansii. Sweden, Coprinopsis rubra on cow dung, Elaphomyces nemoreus from deciduous woodlands. Spain, Polyscytalum pini-canariensis on needles of Pinus canariensis, Pseudosubramaniomyces septatus from stream sediment, Tuber lusitanicum on soil under Quercus suber. Thailand, Tolypocladium flavonigrum on Elaphomyces sp. USA, Chaetothyrina spondiadis on fruits of Spondias mombin, Gymnascella minnisii from bat guano, Juncomyces patwiniorum on culms of Juncus effusus, Moelleriella puertoricoensis on scale insect, Neodothiora populina (incl. Neodothiora gen. nov.) on stem cankers of Populus tremuloides, Pseudogymnoascus palmeri from cave sediment. Vietnam, Cyphellophora vietnamensis on leaf litter, Tylopilus subotsuensis on soil in montane evergreen broadleaf forest. Morphological and culture characteristics are supported by DNA barcodes.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; ITS nrDNA barcodes ; LSU ; new taxa ; systematics
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    Studies in Oberonia 8 (Orchidaceae: Malaxideae). Additional 24 new synonyms, a corrected spelling, and other nomenclatural matters (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 3, pp. 188-203
    Details
    Publication Date: 2024-05-20
    Description: The following 24 new synonyms in the orchid genus Oberonia are proposed, correct name (synonym(s)): O. aporophylla (O. longirepens); O. bertoldii (O. gracillima, O. laeta); O. bifida (O. celebica, O. fissiglossa); O. brunoniana (O. wallichii, O. saintberchmansii); O. costeriana (O. vulcanica); O. ensiformis (O. vesiculifera); O. griffithiana (O. khuongii); O. heliophila (O. asperula, O. rivularis, O. inversiflora, O. hosokawai); O. obcordata (O. menghaiensis); O. pachyphylla (O. janae); O. pachystachya (O. trignonoglossa); O. rhizomatosa (O. repens, O. torana, O. ponapensis, O. chenii, Hippeophyllum microphyllum); O. spathipetala (O. odontopetala, O. pectinata). Oberonia anicpita is not a distinct name introduced by Náves in F.M.Blanco but an orthographic variant of O. anceps, itself a synonym of O. lycopodioides. The spelling of several species epithets in honour of Takahide Hosokawa, a man, are corrected to hosokawai: Carpesium hosokawae (Asteraceae), Glochidion hosokawae (Phyllanthaceae), Pandanus hosokawae (Pandanaceae), Psychotria hosokawae (Rubiaceae), Eria hosokawae, Microtatorchis hosokawae, Habenaria hosokawae, Moerenhoutia hosokawae (all Orchidaceae).
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; nomenclature ; taxonomic vandalism ; typification ; variability
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    Phylogenetic analysis of the Calamus javensis complex (Arecaceae: Calamoideae) in Malesia (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 3, pp. 205-211
    Details
    Publication Date: 2024-05-22
    Description: A phylogenetic analysis on specimen level was made in possible support of a multivariate analysis of the Calamus javensis complex. Nine species, at some time recognized within the complex, and several recognisable forms were included. The phylogenetic markers used were the nuclear 5S spacer (5S nrDNA) and the chloroplast Maturase K (matK). The Bayesian analysis showed that only 5S provided some resolution. The 50 % majority rule consensus showed one major polytomy with a few supported groups, which were mainly morphologically unsupported pairs of specimens. However, one group, the form C. tenompokensis (the only distinct group in a multivariate analysis) is morphologically distinct and phylogenetically monophyletic and can be recognized as a species. Of all other recognizable forms, we only consider C. acuminatus to be regarded as a variety as it was not supported in the morphometric analysis.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Calamoideae ; Calamus javensis ; chloroplast DNA ; intraspecific variation ; matK ; molecular phylogeny ; nuclear DNA ; paraphyletic ; rattan
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    A morphological and phylogenetic evaluation of Marasmius sect. Globulares (Globulares-Sicci complex) with nine new taxa from the Neotropical Atlantic Forest (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 44, pp. 240-277
    Details
    Publication Date: 2024-05-22
    Description: The largest and most recently emended Marasmius sect. Globulares (Globulares-Sicci complex) has increased in number of species annually while its infrasectional organization remains inconclusive. During forays in remnants of theAtlantic Rainforest in Brazil, 24 taxa of Marasmius belonging to sect. Globulares were collected from which nine are herein proposed as new: Marasmius altoribeirensis, M. ambicellularis, M. hobbitii, M. luteoolivaceus, M. neotropicalis, M. pallidibrunneus, M. pseudoniveoaffinis, M. rhabarbarinoides and M. venatifolius. We took this opportunity to evaluate sect. Globulares sensuAntonín & Noordel. in particular, combining morphological examination and both single and multilocus phylogenetic analyses using LSU and ITS data, including Neotropical samples to a broader and more globally distributed sampling of over 200 strains. Three different approaches were developed in order to better use the genetic information via Bayesian and Maximum Likelihood analyses. The implementation of these approaches resulted in: i) the phylogenetic placement of the new and known taxa herein studied among the other taxa of a wide sampling of the section; ii) the reconstruction of improved phylogenetic trees presenting more strongly supported resolution especially from intermediate to deep nodes; iii) clearer evidence indicating that the series within sect. Sicci and sect. Globulares in the traditional concept are non-monophyletic by this more stringent evaluation; and iv) the existence of several monophyletic suprespecific groups equivalent to the stirpes of Singer – clusters of morphologically similar species. These two latter points corroborate with findings of previous studies implementing analyses with the entire genus. Based on these results, we proposed a new infrasectional classification elevating Singer’s concept of stirpes to series. Thirteen new series, the emendation of three extant series and three subsections gathering these series based on the major clades are proposed.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Agaricales ; Marasmiaceae ; Neotropics ; phylogenetics ; stirpes ; systematics ; taxonomy
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    Cryphonectriaceae on Myrtales in China: phylogeny, host range, and pathogenicity (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 101-131
    Details
    Publication Date: 2024-05-09
    Description: Plantation-grown Eucalyptus (Myrtaceae) and other trees residing in the Myrtales have been widely planted in southern China. These fungal pathogens include species of Cryphonectriaceae that are well-known to cause stem and branch canker disease on Myrtales trees. During recent disease surveys in southern China, sporocarps with typical characteristics of Cryphonectriaceae were observed on the surfaces of cankers on the stems and branches of Myrtales trees. In this study, a total of 164 Cryphonectriaceae isolates were identified based on comparisons of DNA sequences of the partial conserved nuclear large subunit (LSU) ribosomal DNA, internal transcribed spacer (ITS) regions including the 5.8S gene of the ribosomal DNA operon, two regions of the β-tubulin (tub2/tub1) gene, and the translation elongation factor 1-alpha (tef1) gene region, as well as their morphological characteristics. The results showed that eight species reside in four genera of Cryphonectriaceae occurring on the genera Eucalyptus, Melastoma (Melastomataceae), Psidium (Myrtaceae), Syzygium (Myrtaceae), and Terminalia (Combretaceae) in Myrtales. These fungal species include Chrysoporthe deuterocubensis, Celoporthe syzygii, Cel. eucalypti, Cel. guangdongensis, Cel. cerciana, a new genus and two new species, as well as one new species of Aurifilum. These new taxa are hereby described as Parvosmorbus gen. nov., Par. eucalypti sp. nov., Par. guangdongensis sp. nov., and Aurifilum terminali sp. nov. Pathogenicity tests showed that the eight species of Cryphonectriaceae are pathogenic to two Eucalyptus hybrid seedlings, Melastoma sanguineum branches, and Psidium guajava and Syzygium jambos seedlings. The overall data showed that Chr. deuterocubensis is the most aggressive, followed by Par. eucalypti. Significant differences in tolerance were observed between the two tested Eucalyptus hybrid genotypes, suggesting that disease-tolerant genotypes can be selected for disease management in the Eucalyptus industry.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Eucalyptus ; fungal pathogen ; host jump ; Myrtaceae ; new taxa ; plantation forestry
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    Phylogeny and character evolution in the Dacrymycetes, and systematics of Unilacrymaceae and Dacryonaemataceae fam. nov. (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 44, pp. 161-205
    Details
    Publication Date: 2024-05-09
    Description: We present a multilocus phylogeny of the class Dacrymycetes, based on data from the 18S, ITS, 28S, RPB1, RPB2, TEF-1α, 12S, and ATP6 DNAregions, with c. 90 species including the types of most currently accepted genera. A variety of methodological approaches was used to infer phylogenetic relationships among the Dacrymycetes, from a supermatrix strategy using maximum likelihood and Bayesian inference on a concatenated dataset, to coalescence-based calculations, such as quartet-based summary methods of independent single-locus trees, and Bayesian integration of single-locus trees into a species tree under the multispecies coalescent. We evaluate for the first time the taxonomic usefulness of some cytological phenotypic characters, i.e., vacuolar contents (vacuolar bodies and lipid bodies), number of nuclei of recently discharged basidiospores, and pigments, with especial emphasis on carotenoids. These characters, along with several others traditionally used for the taxonomy of this group (basidium shape, presence and morphology of clamp connections, morphology of the terminal cells of cortical/ marginal hyphae, presence and degree of ramification of the hyphidia), are mapped on the resulting phylogenies and their evolution through the class Dacrymycetes discussed. Our analyses reveal five lineages that putatively represent five different families, four of which are accepted and named. Three out of these four lineages correspond to previously circumscribed and published families (Cerinomycetaceae, Dacrymycetaceae, and Unilacrymaceae), and one is proposed as the new family Dacryonaemataceae. Provisionally, only a single order, Dacrymycetales, is accepted within the class. Furthermore, the systematics of the two smallest families, Dacryonaemataceae and Unilacrymaceae, are investigated to the species level, using coalescence-based species delimitation on multilocus DNAdata, and a detailed morphological study including morphometric analyses of the basidiospores. Three species are accepted in Dacryonaema, the type, Da. rufum, the newly combined Da. macnabbii (basionym Dacrymyces macnabbii), and a new species named Da. macrosporum. Two species are accepted in Unilacryma, the new U. bispora, and the type, U. unispora, the latter treated in a broad sense pending improved sampling across the Holarctic
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Carotenoids ; coalescence analyses ; cytology ; Dacrymycetes ; Dacryonaema ; species delimitations ; Unilacryma
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    Gymnosporangium species on Malus: species delineation, diversity and host alternation (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 68-100
    Details
    Publication Date: 2024-05-03
    Description: Gymnosporangium species (Pucciniaceae, Pucciniales, Basidiomycota) are the causal agents of cedarapple rust diseases, which can lead to significant economic losses to apple cultivars. Currently, the genus contains 17 described species that alternate between spermogonial/aecial stages on Malus species and telial stages on Juniperus or Chamaecyparis species, although these have yet to receive a modern systematic treatment. Furthermore, prior studies have shown that Gymnosporangium does not belong to the Pucciniaceae sensu stricto (s.str.), nor is it allied to any currently defined rust family. In this study we examine the phylogenetic placement of the genus Gymnosporangium. We also delineate interspecific boundaries of the Gymnosporangium species on Malus based on phylogenies inferred from concatenated data of rDNA SSU, ITS and LSU and the holomorphic morphology of the entire life cycle. Based on these results, we propose a new family, Gymnosporangiaceae, to accommodate the genus Gymnosporangium, and recognize 22 Gymnosporangium species parasitic on Malus species, of which G. lachrymiforme, G. shennongjiaense, G. spinulosum, G. tiankengense and G. kanas are new. Typification of G. asiaticum, G. fenzelianum, G. juniperi-virginianae, G. libocedri, G. nelsonii, G. nidus-avis and G. yamadae are proposed to stabilize the use of names. Morphological and molecular data from type materials of 14 Gymnosporangium species are provided. Finally, morphological characteristics, host alternation and geographical distribution data are provided for each Gymnosporangium species on Malus.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Apple rust ; host alternation ; new taxa ; species delimitation
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    Lactifluus (Russulaceae) diversity in Central America and the Caribbean: melting pot between realms (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 44, pp. 278-300
    Details
    Publication Date: 2024-05-03
    Description: Species of the ectomycorrhizal genus Lactifluus, and often entire sections, are typically unique to a single continent. Given these biogeographic patterns, an interesting region to study their diversity is Central America and the Caribbean, since the region is closely connected to and often considered a part of the North American continent, but biogeographically belong to the Neotropical realm, and comprises several regions with different geologic histories. Based on a multi-gene phylogeny and morphological study, this study shows that Central America, Mexico and the Caribbean harbour at least 35 Lactifluus species, of which 33 were never reported outside of this region. It was found that species from the Caribbean generally show affinities to South American taxa, while species from the Central American mainland generally show affinities to Northern hemispheric taxa. We hypothesise that host specificity and/or climate play a crucial role in these different origins of diversity. Because of these different affinities, Caribbean islands harbour a completely different Lactifluus diversity than the Central American mainland. The majority of species occurring on the islands can be considered endemic to certain islands or island groups. In this paper, detailed morphological descriptions are given, with a focus on the unique diversity of the islands, and identification keys to all hitherto described Lactifluus species occurring in Central America and the Caribbean are provided. One new section, Lactifluus sect. Nebulosi, and three new species, Lactifluus guadeloupensis, Lactifluus lepus and Lactifluus marmoratus are described.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Antilles ; Basidiomycota ; ectomycorrhizal fungi ; French West Indies ; integrative taxonomy ; Latin America ; Middle America ; new taxa ; Russulales
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    Dieback and decline pathogens of olive trees in South Africa (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 196-220
    Details
    Publication Date: 2024-05-03
    Description: Trunk disease fungal pathogens reduce olive production globally by causing cankers, dieback, and other decline-related symptoms on olive trees. Very few fungi have been reported in association with olive dieback and decline in South Africa. Many of the fungal species reported from symptomatic olive trees in other countries have broad host ranges and are known to occur on other woody host plants in the Western Cape province, the main olive production region of South Africa. This survey investigated the diversity of fungi and symptoms associated with olive dieback and decline in South Africa. Isolations were made from internal wood symptoms of 145 European and 42 wild olive trees sampled in 10 and 9 districts, respectively. A total of 99 taxa were identified among 440 fungal isolates using combinations of morphological and molecular techniques. A new species of Pseudophaeomoniella, P. globosa, had the highest incidence, being recovered from 42.8 % of European and 54.8 % of wild olive samples. This species was recovered from 9 of the 10 districts where European olive trees were sampled and from all districts where wild olive trees were sampled. Members of the Phaeomoniellales (mainly P. globosa) were the most prevalent fungi in five of the seven symptom types considered, the only exceptions being twig dieback, where members of the Botryosphaeriaceae were more common, and soft/white rot where only Basidiomycota were recovered. Several of the species identified are known as pathogens of olives or other woody crops either in South Africa or elsewhere in the world, including species of Neofusicoccum, Phaeoacremonium, and Pleurostoma richardsiae. However, 81 of the 99 taxa identified have not previously been recorded on olive trees and have unknown interactions with this host. These taxa include one new genus and several putative new species, of which four are formally described as Celerioriella umnquma sp. nov., Pseudophaeomoniella globosa sp. nov., Vredendaliella oleae gen. & sp. nov., and Xenocylindrosporium margaritarum sp. nov.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Celerioriella ; five new taxa ; Olea europaea subsp. cuspidata ; Olea europaea subsp. europaea ; phylogenetics ; Pseudophaeomoniella ; taxonomy ; Vredendaliella ; Xenocylindrosporium
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  • 80
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    Mating genes in Calonectria and evidence for a heterothallic ancestral state (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 163-176
    Details
    Publication Date: 2024-05-07
    Description: The genus Calonectria includes many important plant pathogens with a wide global distribution. In order to better understand the reproductive biology of these fungi, we characterised the structure of the mating type locus and flanking genes using the genome sequences for seven Calonectria species. Primers to amplify the mating type genes in other species were also developed. PCR amplification of the mating type genes and multi-gene phylogenetic analyses were used to investigate the mating strategies and evolution of mating type in a collection of 70 Calonectria species residing in 10 Calonectria species complexes. Results showed that the organisation of the MAT locus and flanking genes is conserved. In heterothallic species, a novel MAT gene, MAT1-2-12 was identified in the MAT1-2 idiomorph; the MAT1-1 idiomorph, in most cases, contained the MAT1-1-3 gene. Neither MAT1-1-3 nor MAT1-2-12 was found in homothallic Calonectria (Ca.) hongkongensis, Ca. lateralis, Ca. pseudoturangicola and Ca. turangicola. Four different homothallic MAT locus gene arrangements were observed. Ancestral state reconstruction analysis provided evidence that the homothallic state was basal in Calonectria and this evolved from a heterothallic ancestor.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Cylindrocladium ; fungal biology ; fungal pathogens ; MAT locus ; mating type ; phylogeny ; sexual reproduction
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  • 81
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    High diversity of Diaporthe species associated with pear shoot canker in China (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 132-162
    Details
    Publication Date: 2024-05-06
    Description: Species of Diaporthe (syn. Phomopsis) are important endophytes, saprobes and pathogens, infecting a wide range of plants and resulting in important crop diseases. However, the species occurring on pear remain largely unresolved. In this study, a total of 453 Diaporthe isolates were obtained from branches of Pyrus plants (including P. bretschneideri, P. communis, P. pyrifolia and P. ussuriensis collected from 12 provinces in China) showing shoot canker symptoms. Phylogenetic analyses based on five loci (ITS, TEF, CAL, HIS, and TUB) coupled with morphology of 113 representative isolates revealed that 19 Diaporthe species were isolated, representing 13 known species (including D. caryae, D. cercidis, D. citrichinensis, D. eres, D. fusicola, D. ganjae, D. hongkongensis, D. padina, D. pescicola, D. sojae, D. taoicola, D. unshiuensis and D. velutina) and six new species described here as D. acuta, D. chongqingensis, D. fulvicolor, D. parvae, D. spinosa and D. zaobaisu. Although Koch’s postulates confirmed all species to be pathogenic, a high degree of variation in aggressiveness was observed. Moreover, these species have a high diversity, plasticity, and prevalence related to the geographical location and pear species involved.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; multi-gene phylogeny ; pathogenicity ; Pyrus ; six new taxa ; taxonomy
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  • 82
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    Fungal Planet description sheets: 1042–1111 (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 44, pp. 301-459
    Details
    Publication Date: 2024-05-08
    Description: Novel species of fungi described in this study include those from various countries as follows: Antarctica, Cladosporium arenosum from marine sediment sand. Argentina, Kosmimatamyces alatophylus (incl. Kosmimatamyces gen. nov.) from soil. Australia, Aspergillus banksianus, Aspergillus kumbius, Aspergillus luteorubrus, Aspergillus malvicolor and Aspergillus nanangensis from soil, Erysiphe medicaginis from leaves of Medicago polymorpha, Hymenotorrendiella communis on leaf litter of Eucalyptus bicostata, Lactifluus albopicri and Lactifluus austropiperatus on soil, Macalpinomyces collinsiae on Eriachne benthamii, Marasmius vagus on soil, Microdochium dawsoniorum from leaves of Sporobolus natalensis, Neopestalotiopsis nebuloides from leaves of Sporobolus elongatus, Pestalotiopsis etonensis from leaves of Sporobolus jacquemontii, Phytophthora personensis from soil associated with dying Grevillea mccutcheonii. Brazil, Aspergillus oxumiae from soil, Calvatia baixaverdensis on soil, Geastrum calycicoriaceum on leaf litter, Greeneria kielmeyerae on leaf spots of Kielmeyera coriacea. Chile, Phytophthora aysenensis on collar rot and stem of Aristotelia chilensis. Croatia, Mollisia gibbospora on fallen branch of Fagus sylvatica. Czech Republic, Neosetophoma hnaniceana from Buxus sempervirens. Ecuador, Exophiala frigidotolerans from soil. Estonia, Elaphomyces bucholtzii in soil. France, Venturia paralias from leaves of Euphorbia paralias. India, Cortinarius balteatoindicus and Cortinarius ulkhagarhiensis on leaf litter. Indonesia, Hymenotorrendiella indonesiana on Eucalyptus urophylla leaf litter. Italy, Penicillium taurinense from indoor chestnut mill. Malaysia, Hemileucoglossum kelabitense on soil, Satchmopsis pini on dead needles of Pinus tecunumanii. Poland, Lecanicillium praecognitum on insects’ frass. Portugal, Neodevriesia aestuarina from saline water. Republic of Korea, Gongronella namwonensis from freshwater. Russia, Candida pellucida from Exomias pellucidus, Heterocephalacria septentrionalis as endophyte from Cladonia rangiferina, Vishniacozyma phoenicis from dates fruit, Volvariella paludosa from swamp. Slovenia, Mallocybe crassivelata on soil. South Africa, Beltraniella podocarpi, Hamatocanthoscypha podocarpi, Coleophoma podocarpi and Nothoseiridium podocarpi (incl. Nothoseiridium gen. nov.) from leaves of Podocarpus latifolius, Gyrothrix encephalarti from leaves of Encephalartos sp., Paraphyton cutaneum from skin of human patient, Phacidiella alsophilae from leaves of Alsophila capensis, and Satchmopsis metrosideri on leaf litter of Metrosideros excelsa. Spain, Cladophialophora cabanerensis from soil, Cortinarius paezii on soil, Cylindrium magnoliae from leaves of Magnolia grandiflora, Trichophoma cylindrospora (incl. Trichophoma gen. nov.) from plant debris, Tuber alcaracense in calcareus soil, Tuber buendiae in calcareus soil. Thailand, Annulohypoxylon spougei on corticated wood, Poaceascoma filiforme from leaves of unknown Poaceae. UK, Dendrostoma luteum on branch lesions of Castanea sativa, Ypsilina buttingtonensis from heartwood of Quercus sp. Ukraine, Myrmecridium phragmiticola from leaves of Phragmites australis. USA, Absidia pararepens from air, Juncomyces californiensis (incl. Juncomyces gen. nov.) from leaves of Juncus effusus, Montagnula cylindrospora from a human skin sample, Muriphila oklahomaensis (incl. Muriphila gen. nov.) on outside wall of alcohol distillery, Neofabraea eucalyptorum from leaves of Eucalyptus macrandra, Diabolocovidia claustri (incl. Diabolocovidia gen. nov.) from leaves of Serenoa repens, Paecilomyces penicilliformis from air, Pseudopezicula betulae from leaves of leaf spots of Populus tremuloides. Vietnam, Diaporthe durionigena on branches of Durio zibethinus and Roridomyces pseudoirritans on rotten wood. Morphological and culture characteristics are supported by DNA barcodes.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; ITS nrDNA barcodes ; LSU ; new taxa ; systematics
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  • 83
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    Fungal associates of an invasive pine-infesting bark beetle, Dendroctonus valens, including seven new Ophiostomatalean fungi (2020)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 45, pp. 177-195
    Details
    Publication Date: 2024-05-08
    Description: The red turpentine beetle (RTB; Dendroctonus valens) is a bark beetle that is native to Central and North America. This insect is well-known to live in association with a large number of Ophiostomatalean fungi. The beetle is considered a minor pest in its native range, but has killed millions of indigenous pine trees in China after its appearance in that country in the late 1990s. In order to increase the base of knowledge regarding the RTB and its symbionts, surveys of the beetle’s fungal associates were initially undertaken in China, and in a subsequent study in its native range in NorthAmerica.Atotal of 30 Ophiostomatalean species that included several undescribed taxa, were identified in these surveys. In the present study, seven of the undescribed taxa collected during the surveys were further characterised based on their morphological characteristics and multi-gene phylogenies. We proceeded to describe five of these as novel Leptographium spp. and two as new species of Ophiostoma. Four of the Leptographium spp. resided in the G. galeiformis-species complex, while one formed part of the L. olivaceumspecies complex. One Ophiostoma sp. was a member of the O. ips-species complex, while the only new species from China was closely related to O. floccosum. Two of the previously undescribed taxa from North America were shown to be congeneric with L. terebrantis, implying that this species was most often isolated in association with the RTB in North America. The undescribed taxon from North America was identified as O. ips, and like L. terebrantis, this species was also not recognized during the initial North American survey. Resolving the identities of these taxa provides essential baseline information to better understand the movement of fungal pathogens with this beetle. This then enhances our ability to accurately assess and predict the risks of invasions by these and related fungi.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; invasion biology ; phylogenetics ; Scolytinae ; seven new taxa ; taxonomy
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  • 84
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    Flora of Singapore precursors, 19: Nomenclatural notes on Artabotrys (Annonaceae) and Magnolia (Magnoliaceae) (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 3, pp. 179-187
    Details
    Publication Date: 2024-05-25
    Description: During the preparation of the accounts of Artabotrys (Annonaceae) and Magnolia (Magnoliaceae) for the Flora of Singapore, the types of all relevant names were evaluated. New lectotypes are designated for A. suaveolens and M. maingayi and a second-step lectotypification is performed for M. elegans. The citation of a lectotype locality is corrected for A. costatus and the citation of an isolectotype is improved for A. maingayi. We also clarify the previous use of the term ‘type’ to designate specimens that are in fact lectotypes for several names in Magnolia.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Annonaceae ; Artabotrys ; lectotypification ; Magnoliaceae ; nomenclature ; Singapore
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  • 85
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    Orchidantha anthracina (Lowiaceae), a new species from Vietnam (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 1, pp. 90-93
    Details
    Publication Date: 2024-06-13
    Description: Orchidantha anthracina (Lowiaceae), discovered at the south central coast of Vietnam, is described and illustrated, bringing the total number of species in the family to 26, of which four occur in Vietnam. The notes on distribution, habitat and etymology are given and a preliminary conservation assessment is provided. The species is compared with O. vietnamica, with which it shares flowers of similar size and colours, but from which it is readily distinguished by a narrow and strongly reflexed dorsal sepal and spreading lateral sepals, not supporting the labellum. Notes with additional comparisons to all species with a similar arrangement of lateral sepals are also provided.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Orchidantha grandiflora ; Orchidantha inouei ; Orchidantha vietnamica ; Phú Yên province ; south central coast of Vietnam ; vulnerable ; Zingiberales
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  • 86
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    A new species of Freycinetia (Pandanaceae; Freycinetoideae) from Luzon Island, the Philippines (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 2, pp. 102-103
    Details
    Publication Date: 2024-06-06
    Description: A new species of Freycinetia (Pandanaceae; Freycinetoideae) from Llavac, Quezon Province in Luzon Island, the Philippines, is proposed here, namely Freycinetia nonatoi. Freycinetia nonatoi is characterized by a lobed auricle of the sheath with conspicuous spines on the margins and bright yellow bracts. These three morphological features distinguish it from the nearest species, F. sumatrana. The discovery of F. nonatoi also marks the first record of a member of the section Auriculifoliae with spiny margins.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Auriculifoliae ; Freycinetia ; Luzon ; Pandanaceae ; Philippines ; Quezon
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  • 87
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    New species and a new record of Pterichis sect. Pterichis (Orchidaceae) from Bolivia (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 3, pp. 212-218
    Details
    Publication Date: 2024-06-06
    Description: Pterichis comprises about 40 species distributed from Costa Rica in the north to Bolivia in the south. The species grow as terrestrial plants usually in paramo and subparamo, but there are also reports of populations in high montane forest. In this paper the complete enumeration of the six Bolivian representatives of the orchid genus Pterichis sect. Pterichis is presented.A total of four new species are described and one new record, P. aragogiana, for the country is reported. An updated key to the species of the nominal section of Pterichis from Bolivia is presented.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Andes ; biodiversity ; Neotropics ; new record for Bolivia ; Pterichis aragogiana ; Pterichis fuentesii ; Pterichis lunatilabia ; Pterichis obcordatilabia ; Pterichis vasquezii
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  • 88
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    In memoriam Willem F. Prud'homme van Reine (3 April 1941 – 21 March 2020) (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 2, pp. i-ix
    Details
    Publication Date: 2024-06-17
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics
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  • 89
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    Key to the families and genera of Malesian Euphorbiaceae in the wide sense (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 1, pp. 53-60
    Details
    Publication Date: 2024-06-15
    Description: Identification keys are provided to the different families in which the Euphorbiaceae are split after APG IV. Presently, Euphorbiaceae in the strict sense, Pandaceae, Peraceae, Phyllanthaceae, Picrodendraceae and Putranjivaceae are distinguished as distinct families. Within the families, keys to the different genera occurring in the Malesian area, native and introduced, are presented. The keys are to be tested and responses are very welcome.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Euphorbiaceae ; keys ; Pandaceae ; Peraceae ; Phyllanthaceae ; Picrodendraceae ; Putranjivaceae
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  • 90
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    New species of Amorphophallus (Araceae) in the Philippines and an updated key (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 1, pp. 1-9
    Details
    Publication Date: 2024-06-16
    Description: The number of named Philippine species of the genus Amorphophallus (Araceae-Thomsonieae) amounts to 13 today. Three existing species names (not included in this count) cannot be attributed to presently recognized species for lack of their holotypes, which were all destroyed in WWII. Five new species are described here and an identification key to all species recognized from the Philippines is presented.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Amorphophallus ; Araceae ; identification key ; new species ; Philippines ; taxonomy
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  • 91
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    Impatiens marroninus, a new species of Impatiens (Balsaminaceae) from Sumatra, Indonesia (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 1, pp. 10-11
    Details
    Publication Date: 2024-06-19
    Description: Impatiens marroninus Utami (Balsaminaceae), collected from Sumatra, Indonesia, is described and illustrated as a new species. The species belongs to subg. Impatiens sect. Kathetophyllon. It is characterized by opposite or whorled leaves, yellow flowers with red maroon stripes in the upper part of the two lateral petals, dark green leaves and the lower sepal deeply navicular and constricted into a short curved spur. This combination of morphological characters was previously unknown. Detailed description, illustration, phenology, IUCN conservation assessment and ecology of the species are provided.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Balsaminaceae ; endemic ; Impatiens ; Indonesia ; new species ; taxonomy
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  • 92
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    On the morphological variation of Rafflesia cantleyi (Rafflesiaceae) on Pulau Tioman, Pahang, Peninsular Malaysia (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 1, pp. 75-82
    Details
    Publication Date: 2024-06-20
    Description: In Peninsular Malaysia, Rafflesia is represented by seven species of which R. kerrii (and R. su-meiae) stands out distinctly from the other five. The other five species, R. azlanii, R. cantleyi, R. parvimaculata, R. sharifahhapsahiae and R. tuanku-halimii, are collectively close enough to each other to be referred to as the R. cantleyi complex after its first-described species, R. cantleyi. Pulau Tioman has a population of R. cantleyi, which, because of its island location, is isolated from the mainland complex. This study was conducted to determine morphological variation in a selected location in Pulau Tioman. Twelve flowers were studied with respect to characteristics such as wart (blotch) pattern on perianth lobes, warts (dots) on upper surface of the diaphragm, shape of the aperture, shape of processes and types of ramenta. These are the characters that have been used to define species in the R. cantleyi complex. The variation in the local Tioman population was compared with the variation in the R. cantleyi complex on the mainland, which is about the same magnitude. This supports the idea that R. cantleyi is a single highly polymorphic species and that the species that have been described in the R. cantleyi complex should be reduced to varieties.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; morphology ; Pulau Tioman ; Rafflesia cantleyi complex ; variability
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  • 93
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    Taxonomic revision of Dehaasia (Lauraceae) in Sumatra (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 2, pp. 167-175
    Details
    Publication Date: 2024-06-20
    Description: A revision of Dehaasia (Lauraceae) in Sumatra is presented. Eight species are recognized, including two newly described species (D. bandaharense and D. pilosa). Akey to the eight species, descriptions and distribution maps of each species and illustrations of newly described species are provided. A neotype for D. incrassata is designated.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Dehaasia ; Lauraceae ; revision ; Sumatra ; taxonomy
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  • 94
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    A systematic revision of the vulnerable mangrove genus Pelliciera (Tetrameristaceae) in equatorial America (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 2, pp. 107-120
    Details
    Publication Date: 2024-06-20
    Description: Pelliciera is a genus of mangrove trees with distinct showy flowers with five petals subtended by two large foliaceous bracts. The genus, thought to be monotypic, only containing P. rhizophorae, was classified recently in the small diverse family, the Tetrameristaceae. This distinctive genus occurs in a relatively restricted distribution in Central and northern South America in the Atlantic-East Pacific region. In this recent decade, two varietal forms have been reported across its range, of which one appears to be a colour morph referred to much earlier as P. rhizophorae var. benthamii. The taxonomic status of the earlier morph was, however, insufficient to warrant individual recognition at the time, so the genus remained monotypic with no varietal forms. The aim of this treatment has been to review the systematic history of the genus, to thoroughly re-assess available observations and to re-evaluate the current taxonomic status. In conclusion, the genus is recognised now as having two closely related species, described here as P. benthamii along with a redefined P. rhizophorae. Characters such as leafy bract colour, leaf dentition and petal shape used in their discrimination are provided, along with notes on the ecology, phenology, a diagnostic key, and a revised distribution map that displays the oddly overlapping occurrences.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Atlantic-East Pacific ; Central America ; conservation ; mangrove ; morphometrics ; nectar ; Pelliciera benthamii ; Pelliciera rhizophorae ; phenology ; pollen ; South America ; Tetrameristaceae
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  • 95
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    Timonius eremiticus (Rubiaceae), a new species from the Philippines (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 2, pp. 104-106
    Details
    Publication Date: 2024-06-20
    Description: Timonius eremiticus, a new species from Mount Pulgar, Palawan Island, the Philippines, is here described and illustrated. It is morphologically close to T. flavescens but is characterized by membranous to chartaceous leaves with 2–4 pairs of lateral nerves, ivory-white corolla, bracteate staminate inflorescences bearing bracteolate flowers, 5-petaled pistillate flowers, (sub)globose fruits that are round and not 4-angled, and pyrenes being obliquely radiated in cross-section of fruits. Timonius eremiticus is assessed as Critically Endangered following IUCN criteria. Buod (Wikang Filipino)   Inilarawan at iginuhit sa lathalaing ito ang Timonius eremiticus na isang bagong espesye ng halaman na matatagapuan sa Bundok Pulgar sa pulo ng Palawan sa Pilipinas. Ito ay kawangis ng T. flavescens subalit natatangi dahil sa mga malalamad o malapapel nitong mga dahon na may dalawa o hanggang apat na pares ng nerbiyong lateral, kulay garing na mga talulot, brakteadong istaminate na mga inflorescence at bulaklak, mga pistiladong bulaklak na may limang talulot, (mala)bilugang mga bunga na hindi nakalundo sa apat, at mga pyrene na oblikong naka-radiate sa pahalang na hati ng mga bunga. Ang Timonius eremiticus ay itinataya rin na lubos nang nanganganib na maubos alinsunod sa mga pamantayan ng IUCN.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; endemic ; Guettardeae ; Mount Pulgar ; Palawan ; Rubiaceae ; Timonius
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  • 96
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    In memoriam David G. Frodin (8 April 1940 – 12 August 2019) (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 3, pp. xi-xviii
    Details
    Publication Date: 2024-06-20
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 97
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    Taxonomic notes on Trigonostemon (Euphorbiaceae) in the Philippines (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 1, pp. 12-24
    Details
    Publication Date: 2024-06-20
    Description: Descriptions of five Trigonostemon species in the Philippines (four endemic) are updated with taxonomic notes based on herbarium collections and field observations. A new species of Trigonostemon is described. All species treated here are illustrated with photos. The formerly uncertain species, T. stenophyllus, is now synonymized with T. filiformis. In addition to T. pentandrus, three more Trigonostemon species are reported to cohabit with ants. A new identification key and an updated identification list of Trigonostemon species in the Philippines are provided.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Euphorbiaceae ; Philippines ; revision ; taxonomy ; Trigonostemon
    Repository Name: National Museum of Natural History, Netherlands
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  • 98
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    The botanical exploration of Angola by Germans during the 19th and 20th centuries, with biographical sketches and notes on collections and herbaria (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 2, pp. 126-161
    Details
    Publication Date: 2024-06-20
    Description: A catalogue of 29 German individuals who were active in the botanical exploration of Angola during the 19th and 20th centuries is presented. One of these is likely of Swiss nationality but with significant links to German settlers in Angola. The catalogue includes information on the places of collecting activity, dates on which locations were visited, the whereabouts of preserved exsiccata, maps with itineraries, and biographical information on the collectors. Initial botanical exploration in Angola by Germans was linked to efforts to establish and expand Germany’s colonies in Africa. Later exploration followed after some Germans had settled in the country. However, Angola was never under German control. The most intense period of German collecting activity in this south-tropical African country took place from the early-1870s to 1900. Twenty-four Germans collected plant specimens in Angola for deposition in herbaria in continental Europe, mostly in Germany. Five other naturalists or explorers were active in Angola but collections have not been located under their names or were made by someone else. A further three collectors, who are sometimes cited as having collected material in Angola but did not do so, are also briefly discussed
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Angola ; botanical exploration ; German explorers ; plant collections
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 99
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    The Pleuranthodium (Zingiberaceae) of Mount Wilhelm, Papua New Guinea (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 2, pp. 95-101
    Details
    Publication Date: 2024-06-21
    Description: Three species of Pleuranthodium were encountered and collected during a survey of gingers at Mount Wilhelm, Chimbu Province, Papua New Guinea. Based on new material, the only previously known Pleuranthodium from this area, P. piundaundense, is described in more detail highlighting new diagnostic characters and its known distribution range is expanded based on identification of older specimens at Edinburgh from two other provinces. Two species so far only known from Mount Wilhelm could not be identified after studying all protologues, types and material from several herbaria. These are here described as new species, P. corniculatum and P. sagittatum. A key with both floral and vegetative characters is provided to all three species. Pleuranthodium corniculatum is distinct in having apical appendages on the calyx, and P. sagittatum has a wrinkled calyx. All species are described and illustrated, and conservation assessments are made.
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Chimbu ; Eastern Highlands ; Pleuranthodium corniculatum ; Pleuranthodium piundaundense ; Pleuranthodium sagittatum ; taxonomy ; Zingiberaceae
    Repository Name: National Museum of Natural History, Netherlands
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  • 100
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    Peliosanthes macrophylla var. assamensis (Asparagaceae), a new variety from Behali Reserve Forest in Assam, Northeast India (2020)
    Naturalis Biodiversity Center
    In:  Blumea: Biodiversity, Evolution and Biogeography of Plants vol. 65 no. 2, pp. 121-125
    Details
    Publication Date: 2024-06-29
    Description: Peliosanthes macrophylla var. assamensis, a new variety from Behali Reserve Forest in Assam, Northeast India, is described with accompanying photos and relevant taxonomic data. It differs from var. macrophylla from Arunachal Pradesh and Sikkim, Northeast India, mainly by the staminal corona internally protruding near the middle (vs internally upright corona without a particular inward protrusion), shorter anthers somewhat divergent distally (vs nearly upright anthers), and longer, papillulate pistils exceeding the anthers (vs glabrous pistils not exceeding the anthers).
    Keywords: Plant Science ; Ecology ; Evolution ; Behavior and Systematics ; Asparagaceae ; Eastern Himalayas ; floral structure ; new variety ; Peliosanthes macrophylla ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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