ALBERT

Description: There are some active bottom currents on the northern continental slope of the South China Sea (SCS). Reflection seismic profiles show that the bottom current channels occur in the water depth range of 1000 to 2700 m, extending from the NE to the SW, leading to accumulation of discontinuous drifts with higher sedimentation rates on the eastern side of the channel. The stacking pattern of the layers suggests that these drifts propagated southwestward, following the direction of the bottom currents. One sedimentary drift to the southeast of the Dongsha Islands has the highest sedimentation rate of 97cm/ka in the last 12 ka. The sedimentary characteristics of the sediment layers indicate that these bottom currents are most likley caused by the water movement of a branch of the West Pacific Ocean Current, which enters the northern SCS via the Bashi Strait. Once formed, the bottom currents transport sediments along the northern slope of SCS southwestward and finally disappear into the central basin of the SCS. Due to the bottom current activity, the deep-sea sedimentary process in the northern SCS is complex.

Description: Quantitation of nucleic acids is a fundamental tool in molecular biology that requires accuracy, reliability, and the use of increasingly smaller sample volumes. This unit describes the traditional absorbance measurement at 260 nm and three more sensitive fluorescence techniques, as well as three microvolume methods that use fiber optic technology in specialized cells or instrumentation. These procedures allow quantitation of DNA solutions ranging from 1 pg/µl to 50 mg/ml.

Description: In contrast to continuum systems where localization or shear banding arises through a bifurcation in a predefined system of differential equations, shear bands emerge in numerical simulations of deforming granular systems with no prescribed mathematical relations other than simple contact forces between particles. Shear bands emerge from the self‐organization of large numbers of particles with long‐range geometrical interactions playing a dominant role; both translation and rotation of particles are important. Granular media therefore deform more like materials with non‐local constitutive relations than materials where only first‐order interactions are relevant. In this paper we adopt a thermo‐mechanical approach and explore the fluxes of energy in the evolving granular system (that has cohesion as well as friction between the particles) as it is loaded through the unstable localization regime, and track the evolution of energy dissipation. As in continua, the sign of the second‐order work defines the emergence of instability in the system. Initially, these instabilities decay into stable configurations of particles but with continued loading, force chains collapse locally to generate geometrically necessary fractures. These zones then propagate to generate localization zones. When these fractures form a continuous network, the system is at the percolation thresh‐hold for broken bonds. However, long before this stage, the second‐order work fluctuates in bursts weakly correlated with bursts in kinetic energy as damage accumulates. This behaviour suggests that any continuum constitutive description of granular media must be (i) non‐local in an anisotropic manner, (ii) micro‐polar, and (iii) involve damage evolution.

Description: Cold-water coral carbonate mounds, owing their presence mainly to the framework building coral Lophelia pertusa and the activity of associated organisms, are common along the European margin with their spatial distribution allowing them to be divided into a number of mound provinces. Variation in mound attributes are explored via a series of case studies on mound provinces that have been the most intensely investigated: Belgica, Hovland, Pelagia, Logachev and Norwegian Mounds. Morphological variation between mound provinces is discussed under the premise that mound morphology is an expression of the environmental conditions under which mounds are initiated and grow. Cold-water coral carbonate mounds can be divided into those exhibiting “inherited” morphologies (where mound morphology reflects the morphology of the colonised features) and “developed” morphology (where the mounds assume their own gross morphology mainly reflecting dominant hydrodynamic controls). Finer-scale, surface morphological features mainly reflecting biological growth forms are also discussed.

Description: Sponges of warm- and temperate- but also cold-waters are known to synthesize structurally diverse primary and secondary metabolites. These compounds fulfill a variety of functions including adaptations of the cell membranes to environmental conditions. We show here that boreal sponges of the order Halichondrida are rich sources of brominated lipid fatty acids. The comparison of lipid compositions of halichondrid Demospongiae from boreal and warmer waters indicates an accumulation of brominated fatty acids in sponges from colder settings. Moreover, the spatial distribution of brominated fatty acids in the sponge tissue of one widely distributed sponge of the North-East Atlantic (Phakellia ventilabrum) hints to a function related to membrane fluidity and permeability rather than to defense against predation. However, brominated fatty acids are diagnostic for the presence of bromoperoxidases in sponges and may therefore be potentially useful as markers in a chemical screening for secondary metabolites of pharmacological interest.

Description: Two new compounds, 2, 3, 5-trimethyl-6-(3-oxobutan-2-yl)-4H-pyran-4-one (1) and (2R)-2, 3-dihydro-7-hydroxy-6, 8-dimethyl-2-[(E)-prop-1-enyl] chromen-4-one (2), together with six known compounds (3–8), were isolated from a deep-sea fungus, identified as Aspergillus sydowi, by a bioassay-guided method. Their structures were elucidated by spectroscopic methods and the cytotoxicities were evaluated by SRB method.

Description: The genetic paradigm of cancer, focused largely on sequential molecular aberrations and associated biological impact in the neoplastic cell compartment of malignant tumors, has dominated our view of cancer pathogenesis. For the most part, this conceptualization has overlooked the dynamic and complex contributions of the surrounding microenvironment comprised of non-tumor cells (stroma) that may resist, react to, and/or foster tumor development. Pancreatic ductal adenocarcinoma (PDAC) is a highly lethal disease in which a prominent tumor stroma compartment is a defining characteristic. Indeed, the bulk of PDAC tumor volume consists of non-neoplastic fibroblastic, vascular, and inflammatory cells surrounded by immense quantities of extracellular matrix, far exceeding that found in most other tumor types. Remarkably, little is known about the composition and physiology of the PDAC tumor microenvironment, in particular, the role of stroma in tumor initiation and progression. This review attempts to define key challenges, opportunities and state-of-knowledge relating to the PDAC microenvironment research with an emphasis on how inflammatory processes and key cancer pathways may shape the ontogeny of the tumor stroma. Such knowledge may be used to understand the evolution and biology of this lethal cancer and may convert these insights into new points of therapeutic intervention.

Description: Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) with a bismuth cluster primary ion source was used for analysing microbial lipid biomarkers in 10-µm-thick microscopic cryosections of methanotrophic microbial mats from the Black Sea. Without further sample preparation, archaeal isopranyl glycerol di- and tetraether core lipids, together with their intact diglycoside (gentiobiosyl-) derivatives, were simultaneously identified by exact mass determination. Utilizing the imaging capability of ToF-SIMS, the spatial distributions of these biomarkers were mapped at a lateral resolution of 〈 5 µm in 500 × 500 µm2 areas on the mat sections. Using inline image cluster projectiles in the burst alignment mode, it was possible to reach a lateral resolution of 1 µm on an area of 233 × 233 µm, thus approaching the typical size of microbial cells. The mappings showed different ‘provenances’ within the sections that are distinguished by individual lipid fingerprints, namely (A) the diethers archaeol and hydroxyarchaeol co-occurring with glycerol dialkyl glycerol tetraethers (GDGT), (B) hydroxyarchaeol and dihydroxyarchaeol, and (C) GDGT and gentiobiosyl-GDGT. Because ToF-SIMS is a virtually nondestructive technique affecting only the outermost layers of the sample surface (typically 10–100 nm), it was possible to further examine the studied areas using conventional microscopy, and associate the individual lipid patterns with specific morphological traits. This showed that provenance (B) was frequently associated with irregular, methane-derived CaCO3 crystallites, whereas provenance (C) revealed a population of fluorescent, filamentous microorganisms showing the morphology of known methanotrophic ANME-1 archaea. The direct coupling of imaging mass spectrometry with microscopic techniques reveals interesting perspectives for the in-situ study of lipids in geobiology, microbial ecology, and organic geochemistry. After further developing protocols for handling different kinds of environmental samples, ToF-SIMS could be used as a tool to attack many challenging problems in these fields, such as the attribution of biological source(s) to particular biomarkers in question, or the high-resolution tracking of biogeochemical processes in modern and ancient natural environments.

Description: The achievable accuracy of bathymetric mapping in the deep ocean using robotic systems is most often limited by the available guidance or navigation information used to combine the measured sonar ranges during the map making process. This paper presents an algorithm designed to mitigate the affects of poor ground referenced navigation by applying the principles of map registration and pose filtering commonly used in simultaneous localization and mapping (SLAM) algorithms. The goal of the algorithm is to produce a self-consistent point cloud representation of the bottom terrain with errors that are on a scale similar to the sonar range resolution rather than any direct positioning measurement. The presented algorithm operates causally and utilizes sensor data that are common to instrumented underwater robotic vehicles used for mapping and scientific explorations. Real world results are shown for data taken on several expeditions with the JASON remotely operated vehicle (ROV). Comparisons are made between more standard mapping approaches and the proposed method is shown to significantly improve the map quality and reveal scene information that would have otherwise been obscured due to poor direct navigation information.

Description: Chemical investigation of the fungus Trichoderma sp., isolated from the Caribbean sponge Agelas dispar led to four novel sorbicillinoid polyketide derivatives (1–4) with an unprecedented tricyclic ring system. The structures of all compounds, including the absolute configuration, were determined by interpretation of their spectroscopic data (1D and 2D NMR, CD, MS, UV and IR), and molecular modeling calculations.

Description: Using a portable gas analyzer system, the geogenic gas regime below and around an ancient gate to hell at Hierapolis/Phrygia was characterized. The site was first described by Strabo and Plinius as a gate to the underworld. During centuries, it attracted even ancient tourists. In a grotto below the temple of Pluto, CO2 was found to be at deadly concentrations of up to 91%. Astonishingly, these vapors are still emitted in concentrations that nowadays kill insects, birds, and mammals. The concentrations of CO2 escaping from the mouth of the grotto to the outside atmosphere are still in the range of 4–53% CO2 depending on the height above ground level. They reach concentrations during the night that would easily kill even a human being within a minute. These emissions are thought to reflect the Hadean breath and/or the breath of the hellhound Kerberos guarding the entrance to hell. The origin of the geogenic CO2 is the still active seismic structure that crosses the old town of ancient Hierapolis as part of the Babadag fracture zone. Our measurements confirm the presence of geogenic CO2 in concentrations that explain ancient stories of killed bulls, rams, and songbirds during religious ceremonies. They also strongly corroborate that at least in the case of Hierapolis, ancient writers like Strabo or Plinius described a mystic phenomenon very exactly without much exaggeration. Two thousand years ago, only supernatural forces could explain these phenomena from Hadean depths whereas nowadays, modern techniques hint to the well-known phenomenon of geogenic CO2 degassing having mantle components with relatively higher helium and radon concentrations.

Description: Species of the genus Hysterothylacium are among the most common marine nematode fish parasites in the northern Atlantic. Due to recent findings of cryptic speciation in other parasitic ascaridoid nematodes, a similar pattern of sibling species was hypothesized also for Hysterothylacium aduncum. By investigating a 886- to 890-bp-long genomic DNA fragment including ITS-1, 5.8S rDNA and ITS-2 of 40 specimens of H. aduncum of sprat (Sprattus sprattus) of four different biogeographical regions (North Sea, English Channel, Bay of Biscay, Adriatic Sea), we could not detect significant genetic variability and therefore cryptic speciation. Nevertheless, while ITS-1 and 5.8S rDNA sequences were identical for all analysed specimens, ITS-2 sequences showed a population-specific pattern with the differentiation of an English Channel/Bay of Biscay group from a North Sea/Mediterranean Sea group.

Description: A stable and specific bacterial community was shown to be associated with the Mediterranean sponge Chondrilla nucula. The associated bacterial communities were demonstrated to be highly similar for all studied specimens regardless of sampling time and geographical region. In addition, analysis of 16S rDNA clone libraries revealed three constantly C. nucula-associated bacterial phylotypes belonging to the Acidobacteria, the Gamma- and Deltaproteobacteria present in sponge specimens from two Mediterranean regions with distinct water masses (Ligurian Sea and Adriatic Sea). For the first time, candidate division TM7 bacteria were found in marine sponges. A major part (79%) of the C. nucula-derived 16S rDNA sequences were closely related to other sponge-associated bacteria. Phylogenetic analysis identified 14 16S rRNA gene sequence clusters, seven of which consisted of exclusively sponge-derived sequences, whereas the other seven clusters contained additional environmental sequences. This study adds to a growing database on the stability and variability of microbial consortia associated with marine sponges.

Description: Mombacho is a deeply dissected volcano belonging to the Quaternary volcanic chain of Nicaragua. The southern, historic collapse crater (El Crater) currently hosts a fumarolic field with a maximum temperature of 121°C. Chemical and isotopic data from five gas-sampling field campaigns carried out in 2002, 2003 and 2005 highlight the presence of high-temperature gas components (e.g. SO2, HCl and HF), which indicate a significant contribution of juvenile magmatic fluids to the hydrothermal system feeding the gas discharges. This is strongly supported by the mantle-derived helium and carbon isotopic signatures, although the latter is partly masked by either a sedimentary subduction-related or a shallow carbonate component. The observed chemical and isotopic composition of the Mombacho fluids seems to indicate that this volcanic system, although it has not experienced eruptive events during the last centuries, can be considered active and possibly dangerous, in agreement with the geophysical data recorded in the region. Systematic geochemical monitoring of the fumarolic gas discharges, coupled with a seismic and ground deformation network, is highly recommended in order to monitor a possible new eruptive phase.

Description: We investigated the effect of commercially available enzymes (α-amylase, α-galactosidase, papain, trypsin, and lipase) as well as proteases from deep-sea bacteria on the larval attachment of the bryozoan Bugula neritina L. The 50% effective concentrations (EC50) of the commercial proteases were 10 times lower than those of other enzymes. Crude proteases from six deep-sea Pseudoalteromonas species significantly decreased larval attachment at concentrations of 0.03 to 1 mIU ml−1. The EC50 of the pure protease from the bacterium Pseudoalteromonas issachenkonii UST041101-043 was close to 1 ng ml−1 (0.1 mIU ml−1). The protease and trypsin individually incorporated in a water-soluble paint matrix inhibited biofouling in a field experiment. There are certain correlations between production of proteases by bacterial films and inhibition of larval attachment. None of the bacteria with biofilms that induced attachment of B. neritina produced proteolytic enzymes, whereas most of the bacteria that formed inhibitive biofilms produced proteases. Our investigation demonstrated the potential use of proteolytic enzymes for antifouling defense.

Description: We have applied the novel analytical method NanoSIMS to cephalopod statoliths for the first time in order to analyse their chemical microstructure, using a spatial resolution of 400 nm. This technique makes it possible to analyse in situ nano-scale chemical variations between increment layers. In statoliths of the boreoatlantic armhook squid Gonatus fabricii, we found distinct concentration patterns indicating a periodicity in strontium and sodium distributions. Sr and Na show a negative relation, both elements showing alternating patterns where the increments vary in width between approximately 1 and 5 μm. Results suggest, that aragonite deposited during the night is rich in Na and poor in Sr, while aragonite deposited during the day is rich in Sr and poor in Na. This study demonstrates the excellent suitability of NanoSIMS for nano-scale microchemical analyses of aragonite, providing new information on calcification processes and individual life histories. Possible future fields of application include not only cephalopod statoliths, but also virtually all biomineralized tissues in aquatic organisms like fish otoliths, gastropod statoliths, bivalve shells, foraminifers and corals.

Description: An indoor mesocosm system was set up to study the response of phytoplankton and zooplankton spring succession to winter and spring warming of sea surface temperatures. The experimental temperature regimes consisted of the decadal average of the Kiel Bight, Baltic Sea, and three elevated regimes with 2°C, 4°C, and 6°C temperature difference from that at baseline. While the peak of the phytoplankton spring bloom was accelerated only weakly by increasing temperatures (1.4 days per degree Celsius), the subsequent biomass minimum of phytoplankton was accelerated more strongly (4.25 days per degree Celsius). Phytoplankton size structure showed a pronounced response to warming, with large phytoplankton being more dominant in the cooler mesocosms. The first seasonal ciliate peak was accelerated by 2.1 days per degree Celsius and the second one by 2.0 days per degree Celsius. The over-wintering copepod populations declined faster in the warmer mesocosm, and the appearance of nauplii was strongly accelerated by temperature (9.2 days per degree Celsius). The strong difference between the acceleration of the phytoplankton peak and the acceleration of the nauplii could be one of the “Achilles heels” of pelagic systems subject to climate change, because nauplii are the most starvation-sensitive life cycle stage of copepods and the most important food item of first-feeding fish larvae.

Description: It is widely accepted that climate change constrains biota. Yet, because of the lack of consistent multisite and multitaxon surveys, few studies have addressed general rules about how climate change impacts on structure and diversity of animal communities. Especially, the relative influence of nonclimatic anthropogenic disturbances on this impact is fairly unknown. Here, we present for the first time a meta-analysis assessing the effect of global warming on stream organisms. Fish communities of large rivers in France undergoing various anthropogenic pressures showed significant increase in proportions of warm-water species and of specific richness during the last 15–25 years. Conversely, the equitability decreased, indicating a gradual decrease of the number of dominant species. Finally, the total abundance increased, coupled with rejuvenation and changes in size-structure of the communities. Interestingly, most of these effects were not depressed by the strength of nonclimatic anthropogenic disturbances. Conversely, geographical location of communities and especially closeness of natural barriers to migration could influence their response to climate change. Indeed, increase in the proportion of southern species seemed hindered at sites located close to the southern limit of the European species’ geographical ranges. This work provides new evidence that climate change have deep impacts on communities which, by overtaking the effects of nonclimatic anthropogenic disturbances, could be more substantial than previously thought. Overall, our results stress the importance of considering climate change impacts in studies addressing community dynamics, even in disturbed sites.

Description: Otolith increment width and larval fish data (length and weight) were used to develop an individual-based model (IBM) to describe daily resolved growth rates of North Sea herring (Clupea harengus) larvae (Autumn Spawners) caught during International Herring Larvae Surveys in the ICES area IVa from 1990 to 1998. The model combines sagittal otolith readings (core and individual increment measurements), larval standard length and weight data, and solves an over-determined set of linear system equations for all parameters using the method of least square residuals. The model consists of a matrix, which describes the increment width formation of 119 larvae, a vector containing their length/weight measurements, and a vector describing residuals. The solution vector yields age-dependent maximum somatic growth rates of herring larvae up to an age of 41 days with sizes ranging from 10 to 25 mm. The observed environmental temperature in which larvae dwelled was relatively uniform. Therefore, measured increment width was individually used to determine daily growth from any single larva in relation to their potential maximum growth under optimal feeding conditions. The results are discussed with respect to the spatial and temporal variability of larval occurrence. Finally, an analysis of error estimation of the larval growth characteristics is presented.

Description: Stable isotope signatures of primary producers display high inter- and intraspecific variation. This is assigned to species-specific differences in isotope fractionation and variable abiotic conditions, e.g., temperature, and nutrient and light availability. As consumers reflect the isotopic signature of their food source, such variations have direct impacts on the ecological interpretation of stable isotope data. To elucidate the variability of isotope fractionation at the primary producer level and the transfer of the signal through food webs, we used a standardised marine tri-trophic system in which the primary producers were manipulated while the two consumer levels were kept constant. These manipulations were (1) different algal species grown under identical conditions to address interspecific variability and (2) a single algal species cultivated under different nutrient regimes to address nutrient-dependent variability. Our experiments resulted in strong interspecific variation between different algal species (Thalassiosira weissflogii, Dunaliella salina, and Rhodomonas salina) and nutrient-dependent shifts in stable isotope signatures in response to nutrient limitation of R. salina. The trophic enrichment in 15N and 13C of primary and secondary consumers (nauplii of Acartia tonsa and larval herring) showed strong deviations from the postulated degree of 1.0‰ enrichment in δ13C and 3.4‰ enrichment in δ15N. Surprisingly, nauplii of A. tonsa tended to keep “isotopic homeostasis” in terms of δ15N, a pattern not described in the literature so far. Our results suggest that the diets’ nutritional composition and food quality as well as the stoichiometric needs of consumers significantly affect the degree of trophic enrichment and that these mechanisms must be considered in ecological studies, especially when lower trophic levels, where variability is highest, are concerned.

Description: The soxB gene encodes the SoxB component of the periplasmic thiosulfate-oxidizing Sox enzyme complex, which has been proposed to be widespread among the various phylogenetic groups of sulfur-oxidizing bacteria (SOB) that convert thiosulfate to sulfate with and without the formation of sulfur globules as intermediate. Indeed, the comprehensive genetic and genomic analyses presented in the present study identified the soxB gene in 121 phylogenetically and physiologically divergent SOB, including several species for which thiosulfate utilization has not been reported yet. In first support of the previously postulated general involvement of components of the Sox enzyme complex in the thiosulfate oxidation process of sulfur-storing SOB, the soxB gene was detected in all investigated photo- and chemotrophic species that form sulfur globules during thiosulfate oxidation (Chromatiaceae, Chlorobiaceae, Ectothiorhodospiraceae, Thiothrix, Beggiatoa, Thiobacillus, invertebrate symbionts and free-living relatives). The SoxB phylogeny reflected the major 16S rRNA gene-based phylogenetic lineages of the investigated SOB, although topological discrepancies indicated several events of lateral soxB gene transfer among the SOB, e.g. its independent acquisition by the anaerobic anoxygenic phototrophic lineages from different chemotrophic donor lineages. A putative scenario for the proteobacterial origin and evolution of the Sox enzyme system in SOB is presented considering the phylogenetic, genomic (sox gene cluster composition) and geochemical data.

Description: Permafrost environments in the Arctic are characterized by extreme environmental conditions that demand a specific resistance from microorganisms to enable them to survive. In order to understand the carbon dynamics in the climate-sensitive Arctic permafrost environments, the activity and diversity of methanogenic communities were studied in three different permafrost soils of the Siberian Laptev Sea coast. The effect of temperature and the availability of methanogenic substrates on CH4 production was analysed. In addition, the diversity of methanogens was analysed by PCR with specific methanogenic primers and by denaturing gradient gel electrophoresis (DGGE) followed by sequencing of DGGE bands reamplified from the gel. Our results demonstrated methanogenesis with a distinct vertical profile in each investigated permafrost soil. The soils on Samoylov Island showed at least two optima of CH4 production activity, which indicated a shift in the methanogenic community from mesophilic to psychrotolerant methanogens with increasing soil depth. Furthermore, it was shown that CH4 production in permafrost soils is substrate-limited, although these soils are characterized by the accumulation of organic matter. Sequence analyses revealed a distinct diversity of methanogenic archaea affiliated to Methanomicrobiaceae, Methanosarcinaceae and Methanosaetaceae. However, a relationship between the activity and diversity of methanogens in permafrost soils could not be shown.

Description: The methane oxidation potential of active layer profiles of permafrost soils from the Lena Delta, Siberia, was studied with regard to its respond to temperature, and abundance and distribution of type I and type II methanotrophs. Our results indicate vertical shifts within the optimal methane oxidation temperature and within the distribution of type I and type II methanotrophs. In the upper active layer, maximum methane oxidation potentials were detected at 21°C. Deep active layer zones that are constantly exposed to temperatures below 2°C showed a maximum potential to oxidize methane at 4°C. Our results indicate a dominance of psychrophilic methanotrophs close to the permafrost table. Type I methanotrophs dominated throughout the active layer profiles but their number strongly fluctuated with depth. In contrast, type II methanotrophs were constantly abundant through the whole active layer and displaced type I methanotrophs close to the permafrost table. No correlation between in situ temperatures and the distribution of type I and type II methanotrophs was found. However, the distribution of type I and type II methanotrophs correlated significantly with in situ methane concentrations. Beside vertical fluctuations, the abundance of methane oxidizers also fluctuated according to different geomorphic units. Similar methanotroph cell counts were detected in samples of a flood plain and a polygon rim, whereas cell counts in samples of a polygon centre were up to 100 times lower.

Description: Permafrost environments within the Siberian Arctic are natural sources of the climate relevant trace gas methane. In order to improve our understanding of the present and future carbon dynamics in high latitudes, we studied the methane concentration, the quantity and quality of organic matter, and the activity and biomass of the methanogenic community in permafrost deposits. For these investigations a permafrost core of Holocene age was drilled in the Lena Delta (72°22′N, 126°28′E). The organic carbon of the permafrost sediments varied between 0.6% and 4.9% and was characterized by an increasing humification index with permafrost depth. A high CH4 concentration was found in the upper 4 m of the deposits, which correlates well with the methanogenic activity and archaeal biomass (expressed as PLEL concentration). Even the incubation of core material at −3 and −6°C with and without substrates showed a significant CH4 production (range: 0.04–0.78 nmol CH4 h−1 g−1). The results indicated that the methane in Holocene permafrost deposits of the Lena Delta originated from modern methanogenesis by cold-adapted methanogenic archaea. Microbial generated methane in permafrost sediments is so far an underestimated factor for the future climate development.

Description: Comparison of five deep-water coral (DWC)/mound ecosystems along the European Continental Margin shows that suspended particulate organic matter (sPOM), a potential food source, is lipid rich and of high quality. However, there are differences between the sites. The Darwin and Pelagia Mounds (N. Rockall Trough and N. Porcupine Bank, respectively) have higher proportions of labile particulate lipids (including high proportions of polyunsaturated fatty acids) in the benthic boundary layer than Logachev, Hovland and Belgica Mounds (Rockall Bank, S. Porcupine Bank and Porcupine Seabight, respectively). The high quality sPOM could be transported downslope from the euphotic zone. There is some evidence for inter-annual variability at some sites (e.g. Hovland and Logachev Mounds) as large differences in suspended lipid and particulate organic carbon concentrations were observed over the sampling period. Elevated total organic carbon contents of sediments at mound sites, relative to control sites in some cases (particularly Darwin Mounds), probably reflect local hydrodynamic control and the trapping of sPOM by the DWC. Fresh POM can be relatively rapidly transferred to significant depth (up to 8 cm) through bioturbation that is evident at all sites. There is no clear evidence of present day hydrocarbon seepage at any of the sites.

Description: In spite of the fundamental role the Atlantic Meridional Overturning Circulation (AMOC) plays for global climate stability, no direct current measurement of the Denmark Strait Overflow, which is the densest part of the AMOC, has been available until recently that resolve the cross-stream structure at the sill for long periods. Since 1999, an array of bottom-mounted acoustic instruments measuring current velocity and bottom-to-surface acoustic travel times was deployed at the sill. Here, the optimization of the array configuration based on a numerical overflow model is discussed. The simulation proves that more than 80% of the dense water transport variability is captured by two to three acoustic current profilers (ADCPs). The results are compared with time series from ADCPs and Inverted Echo Sounders deployed from 1999 to 2003, confirming that the dense overflow plume can be reliably measured by bottom-mounted instruments and that the overflow is largely geostrophically balanced at the sill.

Description: M. Dunbar (1957) called attention to the existence of a small circular polynya about 50 m in diameter in Cambridge Fiord in northern Baffin Island for which there was no obvious explanation. Other small polynyas are known in arctic fjords which are usually the result of turbulent mixing in areas of strong currents (Sadler 1974), but Cambridge Fiord is 100 km long, its tidal range is small, and the polynya is situated within 300 m of the delta face at the head of the fjord so that strong turbulence is very unlikely. The annual reappearance of the polynya in late winter is confirmed by a series of aerial survey photographs taken by the Royal Canadian Air Force between 1952 and 1957 and also by reports from Inuit hunters from Pond Inlet. It is first seen within about two weeks of 15 March appearing in exactly the same position each year as a circle with a diameter of about 40 m. Over a period of about a week, a lead extends from the polynya to the shore and open water is visible in the tide crack for several hundred metres either side of the shore end of the lead. The lead, unlike the polynya, changes its position from year to year, but once formed it remains fixed until general break-up (Figure 1).

Description: The experiment IGLOS (Investigation of the Greenland Boundary Layer Over Summit) was conducted in June and July 2002 in the central plateau of the Greenland inland ice. The German research aircraft Polar2, equipped with the turbulence measurement system Meteopod, was used to investigate turbulence and radiation flux profiles near research station “Summit Camp”. Aircraft measurements are combined with measurements of radiation fluxes and turbulent quantities made from a 50 m tower at Summit Camp operated by Eidgenössische Technische Hochschule (ETH) Zürich. During all six flight missions, well-developed stable boundary layers were found. Even in high-wind conditions, the surface inversion thickness did not exceed roughly 100 m. The turbulent height of the stable boundary layer (SBL) was found to be much smaller than the surface inversion thickness. Above the surface layer, significant turbulent fluxes occurred only intermittently in intervals on the order of a few kilometres. Turbulent event fraction in the upper SBL shows the same dependence on gradient Richardson number as reported for near-surface measurements. Clear-air longwave radiation divergence was always found to contribute significantly to the SBL heat budget. In low-wind cases, radiative cooling even turned out to be dominant.

Description: 1. To study the influence of chironomids on the distribution of pore-water concentrations of phosphate, iron and ammonium, we conducted a laboratory experiment using mesocosms equipped with two-dimensional pore-water samplers, filled with lake sediment and populated with different densities of Chironomus plumosus. 2. Specially designed mesocosms were used in the study. A 6-mm deep space between the front plate and the pore-water sampler at the back plate was just thick enough to allow the chironomids to live undisturbed, yet thin enough to force all the burrows into a two-dimensional plane. 3. The courses of the burrows were observed during the experiment as oxidised zones surrounding them, as well as being identified with an X-ray image taken at the end of the experiment. 4. We investigated the relationship between C. plumosus burrows and spatial patterns of pore-water composition. Concentrations of the three ions were significantly less around ventilated burrows (54% to 24%), as bioirrigation caused a convective exchange of pore-water enriched with dissolved species compared with the overlying water, and also because oxygen imported into the sediment resulting in nitrification of ammonium, oxidation of iron(II) and a co-precipitation of phosphate with Fe(III) oxyhydroxides. 5. In mesocosms with chironomids, new (redox) interfaces occurred with diffusive pore-water gradients perpendicular to the course of burrows and the site of major phosphate, ammonium and iron(II) release shifted from the sediment surface to the burrow walls.

Description: Samples from the bottom of the sea were used in the exact determination of the crystals structures of naturally occurring hydrocarbon hydrates. The hydrates of methane, ethane, and propane had a cubic structure II with hexakaidecahedral and pentagonal dodecahedral cages occupied by the guest molecules.

Description: The utility of cuticular autofluorescence for the visualization of copepod morphology by means of confocal laser scanning microscopy (CLSM) was examined. Resulting maximum intensity projections give very accurate information on morphology and show even diminutive structures such as small setae in detail. Furthermore, CLSM enables recognition of internal structures and differences in material composition. Optical sections in all layers and along all axes of the specimens can be obtained by CLSM. The facile and rapid preparation method bears no risk of artefacts or damage occurring to the preparations and the visualized specimens can be used for later analyses allowing for the investigation of irreplaceable type specimens or parts of them. These features make CLSM a very effective tool for both taxonomical and ecological studies in small crustaceans; however, the maximum thickness of the specimens is limited to a few hundred micrometers. Three-dimensional models based on CLSM image stacks allow observation of the preparations from all angles and can permit, improve and speed up studies on functional morphology. The visualization method described has a strong potential to become a future standard technique in aquatic biology due to its advantages over conventional light microscopy and scanning electron microscopy.

Description: Methanogenic archaea from Siberian permafrost complementary to the already well-studied methanogens from non-permafrost habitats were exposed to simulated Martian conditions. After 22 days of exposure to thermo-physical conditions at Martian low- and mid-latitudes up to 90% of methanogenic archaea from Siberian permafrost survived in pure cultures as well as in environmental samples. In contrast, only 0.3%–5.8% of reference organisms from non-permafrost habitats survived at these conditions. This suggests that methanogens from terrestrial permafrost seem to be remarkably resistant to Martian conditions. Our data also suggest that in scenario of subsurface lithoautotrophic life on Mars, methanogenic archaea from Siberian permafrost could be used as appropriate candidates for the microbial life on Mars.

Description: In nature, multiple-species rather than single-species microbial associations with plant or animal (including human) hosts are the rule more than the exception. Prominent examples are the microbial consortia of vertebrate intestines and cattle rumen. As many demosponges are associated with enormous amounts of microorganisms, contributing up to 40-60% of the sponge biomass, they are excellent models for marine multi-species, microbe-host associations. Representatives of at least eight different phyla, many of which contain few or no cultivated representatives, have been identified as specific members of the sponge-associated microbiota. Recent studies show that vertical transmission of symbionts through the larval stages rather than horizontal acquisition from seawater appears to be an important mechanism by which the complex and possibly ancient microbial consortia of sponges are formed.

Description: Many sponge species contain large and diverse communities of microorganisms. Some of these microbes are suggested to be in a mutualistic interaction with their host sponges, but there is little evidence to support these hypotheses. Stable nitrogen isotope ratios of sponges in the Key Largo, Florida (USA) area grouped sponges into species with relatively low δ15N ratios and species with relatively high δ15N ratios. Using samples collected in June 2002 from Three Sisters Reef and Conch Reef in the Key Largo, Florida area, transmission electron microscopy (TEM) and denaturing gradient gel electrophoresis were performed on tissues of the sponges Ircinia felix and Aplysina cauliformis, which are in the low δ15N group, and on tissue of the sponge Niphates erecta, which is in the high δ15N group. Results showed that I. felix and A. cauliformis have large and diverse microbial communities, while N. erecta has a low biomass of one bacterial strain. As the low δ15N ratios indicated a microbial input of nitrogen, these results suggested that I. felix and A. cauliformis were receiving nitrogen from their associated microbial community, while N. erecta was obtaining nitrogen solely from external sources. Sequence analysis of the microbial communities showed a diversity of metabolic capabilities among the microbes of the low δ15N group, which are lacking in the high δ15N group, further supporting metabolic differences between the two groups. This research provides support for hypotheses of mutualisms between sponges and their associated microbial communities.

Description: The skeleton morphology of the azooxanthellate cold-water coral Lophelia pertusa can be strongly influenced by invasive boring sponges that infest corallites in the still living part of the colony. Atypically swollen corallites of live Lophelia pertusa from the Galway Mound (Belgica Carbonate Mound Province, Porcupine Seabight, NE Atlantic), heavily excavated by boring organisms, have been examined with a wide range of non-destructive and destructive methods: micro-computed tomography, macro- and microscopic observations of the outer coral skeleton, longitudinal and transversal thin sections and SEM analyses of coral skeleton casts. As a result, three excavating sponge species have been distinguished within the coral skeleton: Alectona millari, Spiroxya heteroclita and Aka infesta. Furthermore, four main coral/sponge growth stages have been recognised: (1) cylindrical juvenile corallite/no sponge cavities; (2) flared juvenile corallite/linear sponge cavities (if present); (3) slightly swollen adult corallites/chambered oval sponge cavities; (4) very swollen adult corallites/widespread cavities. The inferred correlation between corallite morphology and boring sponge infestation has been detected in micro-computed tomography (micro-CT) images and confirmed in sponge trace casts and peculiar features of coral skeleton microstructure.

Description: Cold-water coral carbonate mounds, owing their presence mainly to the framework building coral Lophelia pertusa and the activity of associated organisms, are common along the European margin with their spatial distribution allowing them to be divided into a number of mound provinces. Variation in mound attributes are explored via a series of case studies on mound provinces that have been the most intensely investigated: Belgica, Hovland, Pelagia, Logachev and Norwegian Mounds. Morphological variation between mound provinces is discussed under the premise that mound morphology is an expression of the environmental conditions under which mounds are initiated and grow. Cold-water coral carbonate mounds can be divided into those exhibiting “inherited” morphologies (where mound morphology reflects the morphology of the colonised features) and “developed” morphology (where the mounds assume their own gross morphology mainly reflecting dominant hydrodynamic controls). Finer-scale, surface morphological features mainly reflecting biological growth forms are also discussed.

Description: We present a new three-dimensional (3-D) P-wave velocity model for the upper-crustal structure beneath the Strait of Georgia, southwestern British Columbia based on non-linear tomographic inversion of wide-angle seismic refraction data. Our study, part of the Georgia Basin Geohazards Initiative (GBGI) is primarily aimed at mapping the depth of the Cenozoic sedimentary basin and delineating the near-surface crustal faults associated with recent seismic activities (e.g. M = 4.6 in 1997 and M = 5.0 in 1975) in the region. Joint inversion of first-arrival traveltimes from the 1998 Seismic Hazards Investigation in Puget Sound (SHIPS) and the 2002 Georgia Basin experiment provides a high-resolution velocity model of the subsurface to a depth of ???7 km. In the southcentral Georgia Basin, sedimentary rocks of the Cretaceous Nanaimo Group and early Tertiary rocks have seismic velocities between 3.0 and 5.5 km s-1. The basin thickness increases from north to south with a maximum thickness of 7 (??1) km (depth to velocities of 5.5 km s-1) at the southeast end of the strait. The underlying basement rocks, probably representing the Wrangellia terrane, have velocities of 5.5-6.5 km-1 with considerable lateral variation. Our tomographic model reveals that the Strait of Georgia is underlain by a fault-bounded block within the central Georgia Basin. It also shows a correlation between microearthquakes and areas of rapid change in basin thickness. The 1997/1975 earthquakes are located near a northeast-trending hinge line where the thicknesses of sedimentary rocks increase rapidly to the southeast. Given its association with instrumentally recorded, moderate sized earthquakes, we infer that the hinge region is cored by an active fault that we informally name the Gabriola Island fault. A northwest-trending, southwest dipping velocity discontinuity along the eastern side of Vancouver Island correlates spatially with the surface expression of the Outer Island fault. The Outer Island fault as mapped in our seismic tomography model is a thrust fault that projects directly into the Lummi Island fault, suggesting that they are related structures forming a fault system that is continuous for nearly 90 km. Together, these inferred thrust faults may account for at least a portion of the basement uplift at the San Juan Islands. ?? 2007 The Authors Journal compilation ?? 2007 RAS.

Description: Sponges (Porifera) are filter feeders that take up microorganisms from seawater and digest them by phagocytosis. At the same time, many sponges are known to harbor massive consortia of symbiotic microorganisms, which are phylogenetically distinct from those in seawater, within the mesohyl matrix. In the present study, feeding experiments were performed to investigate whether phylogenetically different bacterial isolates, hereafter termed “food bacteria,” microbial seawater consortia, and sponge symbiont consortia are taken up and processed differently by the host sponge. Aplysina aerophoba retained high numbers of bacterial isolates and microbial seawater consortia with rates of up to 2.76 × 106 bacteria (g sponge wet weight)–1 h–1, whereas the retention of sponge symbionts was lower by nearly two orders of magnitude [5.37 × 104 bacteria (g sponge wet weight)−1 h–1]. In order to visualize the processing of a food bacterium within sponge tissues, the green fluorescent protein-labeled Vibrio strain MMW1, which had originally been isolated from A. aerophoba, was constructed. Incubation of this strain with A. aerophoba and subsequent visualization in tissue cryosections showed its presence in the choanocytes and/or endopinacocytes lining the canals but, unlike latex beads, not in deeper regions of the mesohyl, which suggests digestion of the bacteria upon contact with the host. Denaturing gradient gel electrophoresis (DGGE) was performed on the incubation seawater to monitor the changes in phylogenetic composition after incubation of the sponge with either seawater or sponge symbiont consortia. However, the DGGE experiment provided no evidence for selective processing of individual lineages by the host sponge. In conclusion, this study extends early studies by Wilkinson et al. (Proc R Soc London B 220:519–528, 1984) that sponges, here A. aerophoba, are able to differentiate between food bacteria and their own bacterial symbionts.

Description: The Caribbean sponge, Plakortis simplex, is known to contain a large array of secondary metabolites, including the antimalarial polyketide plakortin, several unusual glycolipids, and some hopanoids, which closely resemble typical bacterial metabolites. The hypothesis that they could be products of bacterial metabolism was tested by localizing specific metabolites in cells using physical separation of sponge cells, bacterial symbionts and supernatant by differential centrifugation. The obtained fractions were analysed separately for the typical P. simplex metabolites by NMR and mass spectrometry, and most of them were shown to be present in the bacterial cells but not in the sponge cells. In addition, PCR screening showed that the biosynthetic pathway for glycosphingolipids was present in the bacterial cells. Isolation of a Sphingomonas strain PS193 from P. simplex and subsequent glycosphingolipid analysis resulted in the detection of a known glycosphingolipid, GSL-1, that did, however, not match the glycosphingolipid profile of P. simplex. Therefore, it is unlikely that Sphingomonas strain PS193 is an abundant member of the microbial community associated with P. simplex. Other glycosphingolipid producing bacteria in P. simplex remain to be identified. In conclusion, this study provides experimental evidence that the glycolipids and hopanoids and possibly also the polyketide plakortin are produced by microbial symbionts rather than the sponge from which the metabolites were originally isolated.

Description: Two single-channel seismic (SCS) data sets collected in 2000 and 2005 were used for a four-dimensional (4D) time-lapse analysis of an active cold vent (Bullseye Vent). The data set acquired in 2000 serves as a reference in the applied processing sequence. The 4D processing sequence utilizes time- and phase-matching, gain adjustments and shaping filters to transform the 2005 data set so that it is most comparable to the conditions under which the 2000 data were acquired. The cold vent is characterized by seismic blanking, which is a result of the presence of gas hydrate in the subsurface either within coarser-grained turbidite sands or in fractures, as well as free gas trapped in these fracture systems. The area of blanking was defined using the seismic attributes instantaneous amplitude and similarity. Several areas were identified where blanking was reduced in 2005 relative to 2000. But most of the centre of Bullseye Vent and the area around it were seen to be characterized by intensified blanking in 2005. Tracing these areas of intensified blanking through the three-dimensional (3D) seismic volume defined several apparent new flow pathways that were not seen in the 2000 data, which are interpreted as newly generated fractures/faults for upward fluid migration. Intensified blanking is interpreted as a result of new formation of gas hydrate in the subsurface along new fracture pathways. Areas with reduced blanking may be zones where formerly plugged fractures that had trapped some free gas may have been opened and free gas was liberated.

Description: In this paper it is suggested that a stochastic isotropic diffusive process, representing a spatial first order auto regressive process (AR(1)-process), can be used as a null hypothesis for the spatial structure of climate variability. By comparing the leading empirical orthogonal functions (EOFs) of a fitted null hypothesis with EOF modes of an observed data set, inferences about the nature of the observed modes can be made. The concept and procedure of fitting the null hypothesis to the observed EOFs is in analogy to time analysis, where an AR(1)-process is fitted to the statistics of the time series in order to evaluate the nature of the time scale behavior of the time series. The formulation of a stochastic null hypothesis allows one to define teleconnection patterns as those modes that are most distinguished from the stochastic null hypothesis. The method is applied to several artificial and real data sets including the sea surface temperature of the tropical Pacific and Indian Ocean and the Northern Hemisphere wintertime and tropical sea level pressure.

Description: A common elemental analyzer system connected to a temperature-controlled gas chromatography (GC) column and coupled to an isotope ratio mass spectrometer was improved to decrease the determination limit for a simultaneous stable isotope ratio measurement of nitrogen and carbon dioxide. The additional use of a special ashtray system to collect the combustion residuals permitted more time-efficient work. These modifications to the elemental analyzer allowed precise measurements to be made down to 1.5 µg nitrogen and 10 µg carbon for stable isotope analysis. Low system background values and an acceptable signal-to-noise ratio have made an additional blank correction for these low sample measurements unnecessary. We provide a precision of this stable isotope analysis for lowest amounts of 1.2–2 µg nitrogen with a standard deviation of ±0.496‰ (n = 27) and for 8.2–15 µg carbon with a standard deviation of ±0.257‰ (n = 31) across different sample runs under stipulated conditions. This application can be established in an automatic mode without cryofocusing procedures.

Description: Development of a mechanistic understanding and predictions of patterns of biodiversity is a central theme in ecology. One of the most influential theories, the intermediate disturbance hypothesis (IDH), predicts maximum diversity at intermediate levels of disturbance frequency. The dynamic equilibrium model (DEM), an extension of the IDH, predicts that the level of productivity determines at what frequency of disturbance maximum diversity occurs. To test, and contrast, the predictions of these two models, a field experiment on marine hard-substratum assemblages was conducted with seven levels of disturbance frequency and three levels of nutrient availability. Consistent with the IDH, maximum diversity, measured as species richness, was observed at an intermediate frequency of disturbance. Despite documented effects on productivity, the relationship between disturbance and diversity was not altered by the nutrient treatments. Thus, in this system the DEM did not improve the understanding of patterns of diversity compared to the IDH. Furthermore, it is suggested that careful consideration of measurements and practical definitions of productivity in natural assemblages is necessary for a rigorous test of the DEM.

Description: Cephalopod beaks retrieved from stomachs of dead emperor penguin chicks at Pointe Géologie, Terre Adélie, provide information on taxonomic and size composition of the penguin’s squid diet, on the trophic range of the squid species preyed upon and on the fractional trophic impact of the penguin on the whole food web. Emperor penguins prey upon four squid species (Psychroteuthis glacialis, Kondakovia longimana, Gonatus antarcticus, Alluroteuthis antarcticus) and do not take squid larger than 480 mm mantle length. Larger squid live either below the penguin’s diving range or are beyond its handling capacity. Nitrogen stable isotope ratios indicate that squids cover a range of about two trophic levels (2.5–8‰ δ15N). The impact of the emperor penguin, however, concentrates on the upper part of this range, about 68% of its squid prey being 〉6‰ δ15N. The principal components of the emperor’s diet, fish, krill and squid, differ distinctly in average trophic level. Consequently the trophic position of the emperor penguin changes accordingly with diet composition and may differ by almost one trophic level between different emperor penguin colonies.

Description: On- and off-mound sediment cores from Propeller Mound (Hovland Mound province, Porcupine Seabight) were analysed to understand better the evolution of a carbonate mound. The evaluation of benthic foraminiferal assemblages from the off-mound position helps to determine the changes of the environmental controls on Propeller Mound in glacial and interglacial times. Two different assemblages describe the Holocene and Marine Isotope Stage (MIS) 2 and late MIS 3 (∼31 kyr BP). The different assemblages are related to changes in oceanographic conditions, surface productivity and the waxing and waning of the British Irish Ice Sheet (BIIS) during the last glacial stages. The interglacial assemblage is related to a higher supply of organic material and stronger current intensities in water depth of recent coral growth. During the last glaciation the benthic faunas showed high abundances of cassidulinid species, implying cold bottom waters and a reduced availability of organic matter. High sedimentation rates and the domination of Elphidium excavatum point to shelf erosion related to sea-level lowering (∼50 m) and the progradation of the BIIS onto the shelf. A different assemblage described for the on-mound core is dominated by Discanomalina coronata, Gavelinopsis translucens, Planulina ariminensis, Cibicides lobatulus and to a lower degree by Hyrrokkin sarcophaga. These species are only found or show significantly higher relative abundances in on-mound samples and their maximum contribution in the lower part of the record indicates a higher coral growth density on Propeller Mound in an earlier period. They are less abundant during the Holocene, however. This dataset portrays the boundary conditions of the habitable range for the cold-water coral Lophelia pertusa, which dominates the deep-water reefal ecosystem on the upper flanks of Propeller Mound. The growth of this ecosystem occurs during interglacial and interstadial periods, whereas a retreat of corals is documented in the absence of glacial sediments on-mound. Glacial conditions with cold intermediate waters, a weak current regime and high sedimentation rates provide an unfavourable environmental setting for Lophelia corals to grow. A Late Pleistocene decrease is observed in the mound growth for Propeller Mound, which might face its complete burial in the future, as it already happened to the buried mounds of the Magellan Mound province further north.

Description: Quorum sensing (QS) signals have been considered to play important roles in biofilm development and in the attractiveness of biofilms to higher organisms in marine ecosystem. In this study, bacterial QS signalsacylated homoserine lactone derivatives (AHLs) were detected in 2-, 4-, and 6-day-old subtidal biofilms by using AHLs reporter strains. N-dodecanoyl-homoserine lactone (C12-HSL) was identified in 6-day-old biofilm at a concentration of 9.04 μg cm−minus;2 (3.36 mmol l−minus;1). To investigate the possible role of AHLs in the consequent eventlarval settlement of the polychaete Hydroides elegans onto subtidal biofilmsseven biofilm-derived bacteria that effectively induced larval settlement of H. elegans, were screened for AHL production. One of them, the Vibrio sp. UST950701-007, produced N-hexanoyl-homoserine lactone (C6-HSL). Larval settlement bioassay showed that C6-HSL, C12-HSL, and 3-oxo-octanoyl-homoserine lactone (3-oxo-C8-HLS) at certain concentrations induced some initial larval settlement behaviors such as reducing swimming speed, crawling on the bottom. However, these AHLs did not effectively induce larval settlement in comparison to the effective settlement inducer 3-isobutyl-1-methylxanthine. The possible chemokinetic mechanism and indirect effects of AHLs on larval settlement are suggested.

Description: Because of its chemical and radiative properties, atmospheric ozone constitutes a key element of the Earth's climate system. Absorption of sunlight by ozone in the ultraviolet wavelength range is responsible for stratospheric heating, and determines the temperature structure of the middle atmosphere. Changes in middle atmospheric ozone concentrations result in an altered radiative input to the troposphere and to the Earth's surface, with implications on the energy balance and the chemical composition of the lower atmosphere. Although a wide range of ground- and satellite-based measurements of its integrated content and of its vertical distribution have been performed since several decades, a number of uncertainties still remain as to the response of middle atmospheric ozone to changes in solar irradiance over decadal time scales. This paper presents an overview of achieved findings, including a discussion of commonly applied data analysis methods and of their implication for the obtained results. We suggest that because it does not imply least-squares fitting of prescribed periodic or proxy data functions into the considered times series, time-domain analysis provides a more reliable method than multiple regression analysis for extracting decadal-scale signals from observational ozone datasets. Applied to decadal ground-based observations, time-domain analysis indicates an average middle atmospheric ozone increase of the order of 2% from solar minimum to solar maximum, which is in reasonable agreement with model results.

Description: This study aimed at simulating different degrees of winter warming and at assessing its potential effects on ciliate succession and grazing-related patterns. By using indoor mesocosms filled with unfiltered water from Kiel Bight, natural light and four different temperature regimes, phytoplankton spring blooms were induced and the thermal responses of ciliates were quantified. Two distinct ciliate assemblages, a pre-spring and a spring bloom assemblage, could be detected, while their formation was strongly temperature-dependent. Both assemblages were dominated by Strobilidiids; the pre-spring bloom phase was dominated by the small Strobilidiids Lohmaniella oviformis, and the spring bloom was mainly dominated by large Strobilidiids of the genus Strobilidium. The numerical response of ciliates to increasing food concentrations showed a strong acceleration by temperature. Grazing rates of ciliates and copepods were low during the pre-spring bloom period and high during the bloom ranging from 0.06 (Δ0°C) to 0.23 day−1 (Δ4°C) for ciliates and 0.09 (Δ0°C) to 1.62 day−1 (Δ4°C) for copepods. During the spring bloom ciliates and copepods showed a strong dietary overlap characterized by a wide food spectrum consisting mainly of Chrysochromulina sp., diatom chains and large, single-celled diatoms.

Description: We assessed the temporal changes in and the relationships between the structures of the macroinvertebrate communities and the environmental conditions of the French Rhône River (the river from Lake Geneva to the Mediterranean Sea) over the last 20 years (1985–2004). Multisite environmental and biological datasets were analysed using multiple CO-inertia analysis (MCOA) and Procrustean analysis. Changes in environmental conditions were mainly marked by an improvement in water quality between 1985 and 1991 and by an increase in water temperature from 1985 onwards due to climate change. Improvement in water quality seemed to delay changes in community structures under global warming. We then observed trends in community structures coupled with high temperatures and a decrease in oxygen content. Interestingly, we observed both gradual changes and rapid switches in community states. These shifts seemed coupled to extreme hydroclimatic events (i.e. pulse disturbances). Floods and the 2003 heatwave enhanced the development of eurytolerant and invasive taxa which were probably able to take advantage of gradual warming environmental conditions. Despite various site-specific “press” constraints (e.g. hydropower schemes, nuclear power plants), similar changes in community structures were observed along the French Rhône River. Such consistency in temporal processes at large geographical scales underlined the strength of hydroclimatic constraints on community dynamics compared to specific local disturbances. Finally, community structures did not show any sign of recovery, and their relative sensitivities to extreme hydroclimatic events seemed to increase with time. Thus, our results suggest that global changes may reduce the resilience of current community states.

Description: Tubificid and enchytraeid oligochaetes are common members of the interstitial fauna of sandy beaches. Their abundance dynamics, life cycles and distribution patterns were investigated at two beaches on the western Baltic Sea and at a North Sea beach (Isle of Sylt). Populations of 115,000 ind./m2 were found at protected Baltic beaches. Reproduction of the tubificids, Phallodrilus monospermathecus and Spiridion insigne takes place within a well defined breeding period once a year. The market horizontal and vertical distribution patterns of various tubificid and enchytraeid species are elucidated by preference reactions to several physiographic parameters, such as oxygen and water content of the sediment, and salinity.

Description: Seismic and volcanic activities in Central Java, Indonesia, the area of interest of this study, are directly or indirectly related to the subduction of the Indo-Australian plate. In the framework of the MERapi AMphibious EXperiments (MERAMEX), a network consisting of about 130 seismographic stations was installed onshore and offshore in Central Java and operated for more than 150 days. In addition, 3-D active seismic experiments were carried out offshore. In this paper, we present the results of processing combined active and passive seismic data, which contain traveltimes from 292 local earthquakes and additional airgun shots along three offshore profiles. The inversion was performed using the updated LOTOS-06 code that allows processing for active and passive source data. The joint inversion of the active and passive data set considerably improves the resolution of the upper crust, especially in the offshore area in comparison to only passive data. The inversion results are verified using a series of synthetic tests. The resulting images showan exceptionally strong low-velocity anomaly (−30 per cent) in the backarc crust northward of the active volcanoes. In the upper mantle beneath the volcanoes, we observe a low-velocity anomaly inclined towards the slab, which probably reflects the paths of fluids and partially melted materials in the mantle wedge. The crust in the forearc appears to be strongly heterogeneous. The onshore part consists of two high-velocity blocks separated by a narrow low-velocity anomaly, which can be interpreted as a weakened contact zone between two rigid crustal bodies. The recent Java Mw = 6.3 earthquake (2006/05/26-UTC) occurred at the lower edge of this zone. Its focal strike slip mechanism is consistent with the orientation of this contact.

Description: The use of statolith chemistry to trace migration pathways and distinguish populations of cephalopods is based on the assumption that the elemental composition of statoliths is influenced by physicochemical properties of the ambient environment. However, such influences have not been investigated experimentally up until now. This study presents the first microchemical analyses of cephalopod statoliths obtained from laboratory experiments under different controlled temperature and salinity conditions. Our results show that statolith chemical composition is strongly related to both salinity and temperature in ambient waters. The Ba/Ca ratio is negatively related to temperature and shows no relation to salinity. The I/Ca ratio is positively related to temperature and negatively to salinity. No Sr/Ca relation was found to either salinity or temperature, suggesting that the well-established proxy strontium is not as useful in cephalopod statoliths as in other biomineralized aragonites. Microanalysis of trace elements, however, shows an enormous potential for field studies on distribution, migration and stock separation of cephalopods. Furthermore, Synchrotron X-ray Fluorescence Analysis is introduced as a promising novel method for statolith analysis, providing a spatial resolution of typically 10–15 μm combined with detection limits down to 0.5 ppm.

Description: The facultative red algal epiphyte Acrochaetium sp. liberated spores preferentially and recruited more successfully in laboratory cultures when its host Gracilaria chilensis C. J. Bird, McLachlan et E. C. Oliveira was present. The same effect was also induced by cell-free medium from G. chilensis, suggesting it contained a molecular signal. Antibiotics prevented spore release in Acrochaetium sp., even when G. chilensis was present, suggesting a prokaryotic origin of the signal. Simultaneous application of N-butyl-homoserine-lactone (BHL) restored the spore-release capacity, which demonstrated that spore release was not directly inhibited by the antibiotics and indicated that bacterially generated N-acyl-homoserine-lactones (AHLs) regulate spore release. An involvement of AHL was further indicated by the fact that two different halofuranone inhibitors of AHL receptors also inhibited spore release when they were applied at relatively low concentrations. Of seven different AHLs tested, only BHL induced the effect. However, BHL was only active at relatively high concentrations (100 μM), and it was not detected in spore-release-inducing medium of G. chilensis. Another water-soluble AHL or an AHL structure analog is therefore probably the active compound in G. chilensis cultures. The data presented demonstrate that life cycle completion in Acrochaetium sp. strongly depends on bacteria, which are not always present in sufficient numbers on the alga itself. Exogenous bacteria that are associated with G. chilensis or with other potential substrates may therefore trigger timely spore liberation in Acrochaetium sp., provided that the necessary concentration of AHL is reached. This first finding of AHL perception in a red alga confirms that AHL signalling is more widespread among eukaryotes than was thought until recently. However, spore release of a second red alga, Sahlingia subintegra (Rosenv.) Kornmann, was unaffected by AHL, and the reaction observed is therefore not universal.

Description: The spatial structure of surface air temperature (SAT) anomalies in the extratropical latitudes of the Northern Hemisphere (NH) during the 20th century is studied from the data obtained over the period 1892–1999. The expansion of the mean (over the winter and summer periods) SAT anomalies into empirical orthogonal functions (EOFs) is used for analysis. It is shown that variations in the mean air temperature in the Arctic region (within the latitudes 60°–90°N) during both the winter and summer periods can be described with a high accuracy by two spatial orthogonal modes of variability. For the winter period, these are the EOF related to the leading mode of variability of large-scale atmospheric circulation in the NH, the North Atlantic Oscillation, and the spatially localized (in the Arctic) EOF, which describes the Arctic warming of the mid-20th century. The expansion coefficient of this EOF does not correlate with the indices of atmospheric circulation and is hypothetically related to variations in the area of the Arctic ice cover that are due to long-period variations in the influx of oceanic heat from the Atlantic. On the whole, a significantly weaker relation to the atmospheric circulation is characteristic of the summer period. The first leading variability mode describes a positive temperature trend of the past decades, which is hypothetically related to global warming, while the second leading EOF describes a long-period oscillation. On the whole, the results of analysis suggest a significant effect of natural climatic variability on air-temperature anomalies in the NH high latitudes and possible difficulties in isolating an anthropogenic component of climate changes.

Description: Ecological forecasts predict the immigration of boreal species into Arctic waters as one consequence of rising sea temperatures. Here, we report the finding of Atlantic snake pipefish (Entelurus aequoreus) off the western coast of Spitsbergen at 79°N in August 2006. This syngnathid fish species, which was presumed to be confined to waters south of Iceland, has dramatically increased in population size in its core distribution area in the northeastern Atlantic since 2002, probably in response to greater reproduction success due to higher water temperatures. We conclude that our finding is an indication of the predicted northward extension of the distribution range of boreal species.

Description: The distribution of platinum group elements (PGEs) in massive sulfides and hematite–magnetite±pyrite assemblages from the recently discovered basalt-hosted Turtle Pits hydrothermal field and in massive sulfides from the ultramafic-hosted Logatchev vent field both on the Mid-Atlantic Ridge was studied and compared to that from selected ancient volcanic-hosted massive sulfide (VHMS) deposits. Cu-rich samples from black smoker chimneys of both vent fields are enriched in Pd and Rh (Pd up to 227 ppb and Rh up to 149 ppb) when compared to hematite–magnetite-rich samples from Turtle Pits (Pd up to 10 ppb, Rh up to 1.9 ppb). A significant positive correlation was established between Cu and Rh in sulfide samples from Turtle Pits. PGE chondrite-normalized patterns (with a positive Rh anomaly and Pd and Au enrichment), Pd/Pt and Pd/Au ratios close to global MORB, and high values of Pd/Ir and Pt/Ir ratios indicate mafic source rock and seawater involvement in the hydrothermal system at Turtle Pits. Similarly shaped PGE chondrite-normalized patterns and high values of Pd/Pt and Pd/Ir ratios in Cu-rich sulfides at Logatchev likely reflect a similar mechanism of PGE enrichment but with involvement of ultramafic source rocks.

Description: Mid-ocean spreading and accompanying hydrothermal activities result in huge areas with exposure of minerals rich in reduced chemicals – basaltic and peridotitic rocks as well as metal sulfide precipitates – to the oxygenated seawater. Oxidation of Fe and S present in these rocks provides an extensive long-term source of energy to lithotrophs. Investigation of lipid biomarkers and their carbon isotope ratios from a massive iron sulfide of an inactive sulfide mound or inactive chimney sampled at the western flank of the Turtle-Pits hydrothermal field (Mid-Atlantic Ridge, 5°S) revealed a unique lipid distribution. The bacterial fauna appears to be dominated by chemolithotrophs with a distinct lipid composition mainly comprising of iso-branched fatty acids and nonisoprenoidal dialkyl glycerol diethers partially including the very rare macrocyclic cores with 30–35 carbon atoms (including 13,16-dimethyloctacosane and 5,13,16-trimethyloctacosane). The Bacteria are accompanied by most likely hydrogen/CO2-dependent methanogenic Archaea (e.g. Methanococcus) as well as other Archaea with a different life style (e.g. Ferroplasma). Alike some of the bacterial lipids the archaeal lipids predominantly consist of macrocyclic diethers including one C40 and one C41 isoprenoid. Structural homologues of the latter are so far only reported from a methanogenic archaeum and a Pleistocene sulfur deposit. Compound-specific analyses of the stable isotope ratios revealed δ13C values for the majority of bacterial and archaeal lipid components of about 0‰ (vs. VPDB), indicative for chemolithoautotrophically fixed carbon which is, for distinct pathways, accompanied by only negligible fractionations. However, the presence of methanogenic Archaea is indicated by 13C-depleted isoprenoidal lipids (δ13C ~ –50‰) characteristic for certain CO2-reducing methanogens synthesizing lipids via acetyl CoA.

Description: A new methodology is presented to reconstruct migration pathways of individual fish inhabiting ecosystems with moderate-to-strong gradients in temperature or salinity. The method uses measurements of ambient pressure, temperature and salinity obtained from electronic data storage tags attached to individual fish and is particularly applicable in areas with negligible tides. We demonstrate the method with Baltic cod. Hydrographic fields obtained from hydrodynamic modelling were used as a geolocation database to identify daily positions of Baltic cod by comparison with the environmental data collected by the tags. Using randomly distributed individual parameter perturbations in the range of the instrument precision of the tag we simulated a cod migrating through the Baltic Sea. The distance between the prescribed and geolocated positions of this artificial cod was on average 2.9 ± 4.7 (SD) km. Subsequently, the method was used to reconstruct migration routes of 10 real cod tagged in the Bornholm Basin of the Baltic Sea in early spring 2003. Differences were compared between the tag data and the geolocation database. The uncertainty in geolocation at recapture day was on average 75 ± 23 (SD) km, as shown by comparison between geolocated position and recapture position.

Description: Seasonal lipid dynamics of various developmental stages were investigated in Pseudocalanus minutus and Oithona similis. For P. minutus, the dominance of 16:1(n−7), 16:4(n−3) and 20:5(n−3) fatty acids indicated a diatom-based nutrition in spring, whereas 22:6(n−3), 16:0, 18:2(n−6) and 18:1(n−9) pointed to a flagellate-based diet during the rest of the year as well as omnivorous/carnivorous low-level feeding during winter. The shorter-chain fatty alcohols 14:0 and 16:0 prevailed, also reflecting biosynthetic processes typical of omnivores or carnivores. Altogether, the lipid signatures characterized P. minutus as an opportunistic feeder. In contrast, O. similis had consistently high amounts of the 18:1(n−9) fatty acid in all stages and during all seasons pointing to a generally omnivorous/carnivorous/detritivorous diet. Furthermore, the fatty alcohol 20:1(n−9) reached high percentages especially in adult females and males, and feeding on Calanus faecal pellets is suggested. Fatty alcohols, as wax ester moieties, revealed significant seasonal variations in O. similis and a seasonal trend towards wax ester accumulation in autumn in P. minutus. P. minutus utilized its lipid deposits for development in the copepodite stages III and IV and for gonad maturation in CV and females during the dark season. However, CVs and females depended on the spring phytoplankton bloom for final maturation processes and reproduction. O. similis fueled gonad maturation and egg production for reproduction in June by wax esters, whereas reproduction in August/September co-occurred with the accumulation of new depot lipids. Both species revealed significantly higher wax ester levels in deeper (〉50 m) as compared to surface (0–50 m) dwelling individuals related to a descent prior to overwintering.

Description: The ultramafic-hosted Logatchev hydrothermal field (LHF) on the Mid-Atlantic Ridge is characterized by high hydrogen and methane contents in the subseafloor, which support a specialized microbial community of phylogenetically diverse, hydrogen-oxidizing chemolithoautotrophs. We compared the prokaryotic communities of three sites located in the LHF and encountered a predominance of archaeal sequences affiliated with methanogenic Methanococcales at all three. However, the bacterial composition varied in accordance with differences in fluid chemistry between the three sites investigated. An increase in hydrogen seemed to coincide with the diversification of hydrogen-oxidizing bacteria. This might indicate that the host rock indirectly selects this specific group of bacteria. However, next to hydrogen availability further factors are evident (e.g. mixing of hot reduced hydrothermal fluids with cold oxygenated seawater), which have a significant impact on the distribution of microorganisms

Description: After the discovery of large densities of Mnemiopsis leidyi in the Baltic Sea near Kiel by Javidpour et al. (First record of Mnemiopsis leidyi A. Agassiz 1865 in the Baltic Sea, 2006) in October 2006, we investigated the gelatinous zooplankton in the North Sea near Helgoland and recorded Mnemiopsis leidyi for the first time in the North Sea, albeit in much lower densities than those recorded in the Baltic Sea.

Description: We determine the 3-D in situ shear-wave velocities of shallow-water marine sediments by extending the method of surface wave tomography to Scholte-wave records acquired in shallow waters. Scholte waves are excited by air-gun shots in the water column and recorded at the seafloor by ocean-bottom seismometers as well as buried geophones. Our new method comprises three steps: (1) We determine local phase-slowness values from slowness-frequency spectra calculated by a local wavefield transformation of common-receiver gathers. Areal phase-slowness maps for each frequency used as reference in the following step are obtained by interpolating the values derived from the local spectra. (2) We infer slowness residuals to those reference slowness maps by a tomographic inversion of the phase traveltimes of fundamental Scholte-wave mode. (3) The phase-slowness maps together with the residuals at different frequencies define a local dispersion curve at every location of the investigation area. From those dispersion curves we determine a model of the depth-dependency of shear-wave velocities for every location. We apply this method to a 1 km2 investigation area in the Baltic Sea (northern Germany). The phase-slowness maps obtained in step (2) show lateral variation of up to 150 per cent. The shear-wave velocity models derived in the third step typically have very low values (60–80 m s−1) in the top four meters where fine muddy sands can be observed, and values exceeding 170 m s−1 for the silts and sands below that level. The upper edge of glacial till with shear-wave velocities of 300–400 m s−1 is situated approximately 20 m below sea bottom. A sensitivity analysis reveals a maximum penetration depth of about 40 m below sea bottom, and that density may be an important parameter, best resolvable with multimode inversion.

Description: A novel selective enrichment method is described for phototrophic green sulfur bacteria even in the presence of purple sulfur and purple nonsulfur bacteria using sulfanilate, which was discovered during efforts to selectively isolate sulfanilate-metabolizing anoxygenic phototrophic bacteria from marine habitats. Samples for these experiments were obtained from beaches, saltpans, subsurface mangrove soils, fish and prawn aquaculture ponds and backwaters of the East and West coasts of India. Photoorganoheterotrophic and photolithoautotrophic enrichments in the absence of sulfanilate predominantly yielded purple bacterial enrichments. In contrast, photolithoautotrophic enrichments in the presence of sulfanilate yielded green-colored enrichments from the same samples. Whole cell absorption spectra of the enrichment cultures revealed the presence of bacteriochlorophyll c and thus green phototrophic bacteria. Microscopic observation demonstrated the presence of sulfur globules outside the bacterial cells and the presence of non-motile cells, some of which had prosthecae. 16S rDNA sequences obtained from green sulfur bacterial strains isolated from enrichment cultures confirmed the presence of representatives of the green sulfur bacterial genera Prosthecochloris and Chlorobaculum. The selective pressure of sulfanilate exerted through inhibition of phototrophic purple sulfur bacteria was demonstrated by inhibition studies using the purple sulfur bacteria Marichromatium indicum JA100 and Marichromatium sp. JA120 (JCM 13533) and the green sulfur bacterium Prosthecochloris sp. JAGS6 (JCM 13299).

Description: In the marine environment, biofilms on submerged surfaces can promote or discourage the settlement of invertebrate larvae and macroalgal spores. The settlement-mediating effects of biofilms are believed to involve a variety of biofilm attributes including surface chemistry, micro-topography, and a wide range of microbial products from small-molecule metabolites to high-molecular weight extracellular polymers. The settled organisms in turn can modify microbial species composition of biofilms and thus change the biofilm properties and dynamics. A better understanding of biofilm dynamics and chemical signals released and/or stored by biofilms will facilitate the development of antifouling and mariculture technologies. This review provides a brief account of 1) existing knowledge of marine biofilms that are relevant to settlement mediation, 2) biotechnological application of biofilms with respect to developing non-toxic antifouling technologies and improving the operation of aquaculture facilities, and 3) challenges and future directions for advancing our understanding of settlement-mediating functions of biofilms and for applying this knowledge to real-life situations.

Description: This is the first in-depth study of a cluster of cold-water coral reefs, the Fugløy Reefs, found at 70°N on the Norwegian margin. Combining high resolution seismic reflection data, side-scan sonar, video-images, and oceanographic measurements reveals the geologic, geomorphologic and oceanographic setting in which the reefs occur. The reefs consist mainly of the scleractinian ahermatypic Lophelia pertusa, and exist below the thermocline at water depths between 140 m and 190 m. The reefs appear as cone-shaped, acoustically transparent features on seismic reflection data, consistently located in places characterized by the availability of hard substrate, high relief, and periodical exposure to high tidal cur-rents (〉30 cm/s). These currents transport water of the Norwegian Atlantic Current to the reefs from an area with fluid expulsion-related pockmarks. The spatial relationship between reef and pockmark locations and current directions suggests that seepage of biogenic gas might be a catalyst to reef growth. With a height of more than 40 m some of the Fugløy reefs are among the highest reported from the Norwegian Margin. This indicates highly fa-vourable growth conditions, and conservative estimates indicate a net growth rate for the reefs of ~5 mm/yr. We expect that cold-water reefs will be found further north along the Barents Sea margin as general awareness on the geophysical signature and appearance of the reefs increases, because all known factors involved in reef establishment and growth are within the required intervals also further north. Introduction

Description: The symmetry or asymmetry of the process of continental breakup has been much debated over the last 20 years, with various authors proposing asymmetric simple shear models, others advocating more symmetric, pure shear models and some combinations of the two. The unroofing of vast expanses of sub-continental mantle at non-volcanic margins has led some authors to argue in favour of simple shear models, but supporting evidence is lacking. Subsidence evidence from conjugate margin pairs is equivocal, and the detailed crustal and lithospheric structure of such pairs not generally well enough known to draw firm conclusions. In the Porcupine Basin, where the final stages of break-up are preserved, the development of structural asymmetry is demonstrable, and apparently related to late stage coupling of the crust to the mantle following the complete embrittlement of the crust. This agrees with theoretical modelling results, which predict that asymmetric models can develop only on a lithospheric scale when the crust and mantle are tightly coupled. However, whether such asymmetry is maintained during continued exhumation of the mantle is unclear.

Description: Laboratory and numerical experiments and boundary layer analysis of the entrainment of buoyant asthenosphere by subducting oceanic lithosphere implies that slab entrainment is likely to be relatively inefficient at removing a buoyant and lower viscosity asthenosphere layer. Asthenosphere would instead be mostly removed by accretion into and eventual subduction of the overlying oceanic lithosphere. The lower (hot) side of a subducting slab entrains by the formation of a ∼10–30 km-thick downdragged layer, whose thickness depends upon the subduction rate and the density contrast and viscosity of the asthenosphere, while the upper (cold) side of the slab may entrain as much by thermal 'freezing' onto the slab as by mechanical downdragging. This analysis also implies that proper treatment of slab entrainment in future numerical mantle flow experiments will require the resolution of ∼10–30 km-thick entrainment boundary layers.

Description: The local distribution of the bacterial community associated with the marine sponge Tethya aurantium Pallas 1766 was studied. Distinct bacterial communities were found to inhabit the endosome and cortex. Clear differences in the associated bacterial populations were demonstrated by denaturing gradient gel electrophoresis (DGGE) and analysis of 16S rRNA gene clone libraries. Specifically associated phylotypes were identified for both regions: a new phylotype of Flexibacteria was recovered only from the sponge cortex, while Synechococcus species were present mainly in the sponge endosome. Light conduction via radiate spicule bundles conceivably facilitates the unusual association of Cyanobacteria with the sponge endosome. Furthermore, a new monophyletic cluster of sponge-derived 16S rRNA gene sequences related to the Betaproteobacteria was identified using analysis of 16S rRNA gene clone libraries. Members of this cluster were specifically associated with both cortex and endosome of T. aurantium.

Description: The use of filamentous Rhizopus for lactic acid production is facing a challenge due to its low yield mainly caused by the difficulty to control its morphology in submerged fermentation processes. This study was aimed at investigating the impacts of cultivation parameters on the morphology of Rhizopus arrhizus DAR 36017 and lactic acid production using waste potato starch in a laboratory scale bubble column reactor (BCR). The fungal morphology was significantly influenced by carbon sources, process pH, starch concentrations, sparger designs and aeration rates. The favorable morphology for lactic acid production was a freely dispersed small pellet, which was achieved under operation conditions at pH 5.0–6.0, starch concentrations of 60–120 g/L and aeration rates of 0.2–0.8 vvm using a sintered stainless steel disc sparger. Optimal cultivation conditions at pH 6.0 and an aeration rate of 0.4 vvm resulted in the formation of freely dispersed small pellets and 103.8 g/L lactic acid with a yield of 87 % from 120 g/L liquefied potato starch in 48 h. The overall results in terms of lactic acid yield and productivity are comparable to those reported in previous studies using immobilized Rhizopus cells in batch fermentations.

Description: Methods for analysing fish stomach contents are listed and critically assessed with a view to their suitability for determining dietary importance—this term is defined. Difficulties in the application of these methods are discussed and, where appropriate, alternative approaches proposed. Modifications which have practical value are also considered. The necessity of linking measurements of dietary importance to stomach capacity is emphasized and the effects of differential digestion upon interpretation of stomach contents outlined. The best measure of dietary importance is proposed as one where both the amount and bulk of a food category are recorded.

Description: In two closely spaced moorings in the Kiel Bight, four different current meterstwo rotor current meters (Aanderaa and Vector averaging), an acoustic current meter (designed by Gytre), and a pendulum current meter (designed by Niskin) were moored for 22 days. The Vector averaging current meter (VACM) was used as reference instrument on one mooring with the floatation at 7 m depth. The floatation of the second mooring was at 5 m depth in the first 17 days of the experiment, but in 2.7 m depth in the last 5 days to make their mooring more effected by surface waves. The Niskin wing current meter was most effected by wave-induced mooring motion. The Gytre instrument showed the smallest surface-wave effects. The vector variances of this instrument in 7.4 m depth on the surface-wave effected mooring and those of the VACM in 10 m depth on the reference mooring were about equal.

Description: At the sub-Antarctic island of South Georgia 25 of the 29 breeding species are seabirds. Fifteen of these have recently been studied in some detail. By examining the timing of their breeding seasons and their diet and feeding ecology (especially feeding techniques and potential foraging ranges), the nature of their ecological isolating mechanisms, and in particular the way in which they partition the resources of the marine environment, are reviewed. Although breeding season adaptations occur (winter breeding in Wandering Albatross and King Penguin; out of phase breeding in two species-pairs of small petrels) these are less important than dillerences in food and feeding ecology. There is a fundamental distinction between the niche of pursuit-diving species (mainly penguins) and the remainder which are basically surface-feeders. The two abundant krill-eating penguins show clear differences in feeding zones. Three albatrosses and a petrel feed mainly on squid and there are differences in both the species and size of the prey of each. The remaining seabirds chiefly take krill (although the giant petrels are extensive scavengers and some smaller petrels specialize on copepods) and utilize different feeding methods and areas to do so. Various adaptations related to inshore and offshore feeding zones are discussed. Although most species possess a combination of ecological isolating mechanisms additional evidence for the particular importance of dietary differences is presented.

Description: Specific associations of bacteria with phytoplankton have recently been reported in the literature. In our study, we analyzed bacterial communities of microalgal cultures related to algal growth phases. Seven freshly isolated key diatom and dinoflagellate species from Helgoland Roads, North Sea, were investigated. The community composition of associated bacteria as well as the cell numbers, the photosynthetic efficiency of the algae, and the depletion of inorganic nutrients in the medium were recorded over a period of 8 weeks in batch cultures. Diversity and succession of bacterial communities was analyzed by ribosomal intergenic spacer analysis. Phylogenetic analysis of bacterial populations was performed by denaturing gradient gel electrophoresis of 16S rRNA genes followed by DNA sequence analysis. Members of Alphaproteobacteria and Gammaproteobacteria and the Flavobacteria–Sphingobacteria group within the Bacteroidetes phylum predominated in the cultures. Differences in free-living and attached bacterial populations were observed between the phylogenetic groups. Shifts in the bacterial communities could not be correlated to changes of nutrient levels or algal growth phases. Regarding our results, it should not be generalized that the compositions of the bacterial communities are strictly species specific for microalgae. The importance of factors like the composition of exudates is apparent.

Description: A high-performance liquid chromatographic method was developed for the simultaneous determination and pharmacokinetic studies of safflor yellow A, puerarin, 3′-methoxyl-puerarin, and puerarinapioside in the plasma and tissues of rats that had been administered with the traditional Chinese medicine (TCM) preparation Naodesheng via the caudal vein. Samples taken from rats were subjected to protein precipitation with acetone. Separation of these four compounds was accomplished on a Kromisil C18 stationary phase using a mobile phase of acetonitrile–0.1% phosphoric acid–tetrahydrofuran (8:92:2, v/v/v) at a flow-rate of 1.0 mL/min. The detection wavelength was set at 250 nm. The calibration curves of the four components were linear in the given concentration ranges. The intra- and inter-day precisions in plasma and tissues were less than 15% and the extraction recoveries were higher than 60%. The lower limits of quantitation of four components were low enough to determine the four components. These four components all exhibited kinetics that fitted a two-compartment model in rats. The elimination half-life was 1.19 h for safflor yellow A, 2.69 h for puerarin, 2.94 h for 3′-methoxyl-puerarin, and 0.87 h for puerarinapioside, respectively. Following administration of a single injection of Naodesheng, the concentration (C) of the four components in the tissues showed Ckidney 〉 Clung, Cliver 〉 Cspleen, Cstomach, Cheart, approximately. The method is a reliable tool for performing studies of safflor yellow A and three puerarin isoflavones in different biological material

Description: Continental rifting and ocean basin formation can be observed at the present day in the Red Sea, which is used as the modern analogue for the formation of mid-ocean ridges. Competing theories for how spreading begins—either by quasi-instantaneous formation of a whole spreading segment or by initiation of spreading at multiple discrete “nodes” separated by thinned continental lithosphere—have been put forward based, until recently, on the observations that many seafloor features and geophysical anomalies (gravity, magnetics) along the axis of the Red Sea appeared anomalous compared to ancient and modern examples of ocean basins in other parts of the world. The latest research shows, however, that most of the differences between the Red Sea Rift (RSR) and other (ultra)slow-spreading mid-ocean ridges can be related to its relatively young age and the presence and movement of giant submarine salt flows that blanket large portions of the rift valley. In addition, the geophysical data that was previously used to support the presence of continental crust between the axial basins with outcropping oceanic crust (formerly named “spreading nodes”) can be equally well explained by processes related to the sedimentary blanketing and hydrothermal alteration. The observed spreading nodes are not separated from one another by tectonic boundaries but rather represent “windows” onto a continuous spreading axis which is locally inundated and masked by massive slumping of sediments or evaporites from the rift flanks. Volcanic and tectonic morphologies are comparable to those observed along slow and ultra-slow spreading ridges elsewhere and regional systematics of volcanic occurrences are related to variations in volcanic activity and mantle heat flow. Melt-salt interaction due to salt flows, that locally cover the active spreading segments, and the absence of large detachment faults as a result of the nearby Afar plume are unique features of the RSR. The differences and anomalies seen in the Red Sea still may be applicable to all young oceanic rifts, associated with plumes and/or evaporites, which makes the Red Sea a unique but highly relevant type example for the initiation of slow rifting and seafloor spreading and one of the most interesting targets for future ocean research.

Description: Coral reefs in the Red Sea belong to the most diverse and productive reef ecosystems worldwide, although they are exposed to strong seasonal variability, high temperature, and high salinity. These factors are considered stressful for coral reef biota and challenge reef growth in other oceans, but coral reefs in the Red Sea thrive despite these challenges. In the central Red Sea high temperatures, high salinities, and low dissolved oxygen on the one hand reflect conditions that are predicted for ‘future oceans’ under global warming. On the other hand, alkalinity and other carbonate chemistry parameters are considered favourable for coral growth. In coral reefs of the central Red Sea, temperature and salinity follow a seasonal cycle, while chlorophyll and inorganic nutrients mostly vary spatially, and dissolved oxygen and pH fluctuate on the scale of hours to days. Within these strong environmental gradients micro- and macroscopic reef communities are dynamic and demonstrate plasticity and acclimatisation potential. Epilithic biofilm communities of bacteria and algae, crucial for the recruitment of reef-builders, undergo seasonal community shifts that are mainly driven by changes in temperature, salinity, and dissolved oxygen. These variables are predicted to change with the progression of global environmental change and suggest an immediate effect of climate change on the microbial community composition of biofilms. Corals are so-called holobionts and associate with a variety of microbial organisms that fulfill important functions in coral health and productivity. For instance, coral-associated bacterial communities are more specific and less diverse than those of marine biofilms, and in many coral species in the central Red Sea they are dominated by bacteria from the genus Endozoicomonas. Generally, coral microbiomes align with ecological differences between reef sites. They are similar at sites where these corals are abundant and successful. Coral microbiomes reveal a measurable footprint of anthropogenic influence at polluted sites. Coral-associated communities of endosymbiotic dinoflagellates in central Red Sea corals are dominated by Symbiodinium from clade C. Some corals harbour the same specific symbiont with a high physiological plasticity throughout their distribution range, while others maintain a more flexible association with varying symbionts of high physiological specificity over depths, seasons, or reef locations. The coral-Symbiodinium endosymbiosis drives calcification of the coral skeleton, which is a key process that provides maintenance and formation of the reef framework. Calcification rates and reef growth are not higher than in other coral reef regions, despite the beneficial carbonate chemistry in the central Red Sea. This may be related to the comparatively high temperatures, as indicated by reduced summer calcification and long-term slowing of growth rates that correlate with ocean warming trends. Indeed, thermal limits of abundant coral species in the central Red Sea may have been exceeded, as evidenced by repeated mass bleaching events during previous years. Recent comprehensive baseline data from central Red Sea reefs allow for insight into coral reef functioning and for quantification of the impacts of environmental change in the region.

Description: The Laptev and Eastern Siberian shelves are the world’s broadest shallow shelf systems. Large Siberian rivers and coastal erosion of up to meters per summer deliver large volumes of terrestrial matter into the Arctic shelf seas. In this chapter we investigate the applicability of Ocean Colour Remote Sensing during the ice-free summer season in the Siberian Laptev Sea region. We show that the early summer river peak discharge may be traced using remote sensing in years characterized by early sea-ice retreat. In the summer time after the peak discharge, the spreading of the main Lena River plume east and north-east of the Lena River Delta into the shelf system becomes hardly traceable using optical remote sensing methods. Measurements of suspended particulate matter (SPM) and coloured dissolved organic matter (cDOM) are of the same magnitude in the coastal waters of Buor Khaya Bay as in the Lena River. Match-up analyses of in situ chlorophyll-a (Chl-a) show that standard Medium Resolution Imaging Spectrometer (MERIS) and Moderate Resolution Imaging Spectroradiometer (MODIS) satellite-derived Chl-a is not a valid remote sensing product for the coastal waters and the inner shelf region of the Laptev Sea. All MERIS and MODIS-derived Chl-a products are overestimated by at least a factor of ten, probably due to absorption by the extraordinarily high amount of non-algal particles and cDOM in these coastal and inner-shelf waters. Instead, Ocean Colour remote sensing provides information on wide-spread resuspension over shallows and lateral advection visible in satellite-derived turbidity. Satellite Sea Surface Temperature (SST) data clearly show hydrodynamics and delineate the outflow of the Lena River for hundreds of kilometres out into the shelf seas.

Description: Coastal areas are exposed to a variety of threats due to high population densities and rapid economic development. How will this affect human welfare and our dependence on nature's capacity to provide ecosystem goods and services? This paper is original in evaluating this concern for major habitats (macroalgae, seagrasses, blue mussel beds, and unvegetated soft bottoms) in a temperate coastal setting. More than 40 categories of goods and services are classified into provisional, regulating, and cultural services. A wide variety of Swedish examples is described for each category, including accounts of economic values and the relative importance of different habitats. For example, distinguishing characteristics would be the exceptional importance of blue mussels for mitigation of eutrophication, sandy soft bottoms for recreational uses, and seagrasses and macroalgae for fisheries production and control of wave and current energy. Net changes in the provision of goods and services are evaluated for three cases of observed coastal ecosystem shifts: i) seagrass beds into unvegetated substrate; ii) unvegetated shallow soft bottoms into filamentous algal mat dominance; and iii) macroalgae into mussel beds on hard substrate. The results are discussed in a management context including accounts of biodiversity, interconnectedness of ecosystems, and potential of economic valuation.

Description: The size of current plankton image datasets renders manual classification virtually infeasible. The training of models for machine classification is complicated by the fact that a large number of classes consist of only a few examples. We employ the recently introduced weight imprinting technique in order to use the available training data to train accurate classifiers in absence of enough examples for some classes. The model architecture used in this work succeeds in the identification of plankton using machine learning with its unique challenges, i.e. a limited number of training examples and a severely skewed class size distribution. Weight imprinting enables a neural network to recognize small classes immediately without re-training. This permits the mining of examples for novel classes.

Description: This review article aims to provide an overview and insight into the most relevant aspects of wind energy development and current state-of-the-art. The industry is in a very mature stage, so it seems to be the right time to take stock of the relevant areas of wind energy use for power generation. For this review, the authors considered the essential aspects of the development of wind energy technology: research, modeling, and prediction of wind speed as an energy source, the technology development of the plants divided into the mechanical and electrical systems and the plant control, and finally the optimal plant operation including the maintenance strategies. The focus is on the development in Europe, with a partial focus on Germany. The authors are employees of the Fraunhofer Institutes, Institute for Energy Economics and Energy Systems Technology and Institute for Wind Energy Systems, who have contributed to the development of this technology for decades.

Description: The Alpine orogeny is well recorded onshore and offshore by tectonic inversion of the Mesozoic rift basins. Large scale linear seamounts (more than 250 km long and with up to 5 km of uplift) involving oceanic and continental lithosphere were carried on top of thrusts, such as the Gorringe seamount and the Estremadura Spur in the SouthWest and West Iberia Margin, respectively. The SouthWest Iberia Margin also recorded the westward migration of the Gibraltar Oceanic slab as the westwards propagation of the Neo-Tethys subduction. Rotation of the tectonic compression from NW-SE to WNW-ESE inPliocene times caused the development of large scale dextral wrench faults as the present day Africa-Iberia plate boundary. Neotectonics of this plate boundary caused large to mega-scale destructive earthquakes and tsunamis.

Description: Hydrothermal circulation at mid-ocean ridges and assimilation of hydrothermally altered crust or hydrothermal fluids by rising magma can be traced by measuring chlorine (Cl) excess in erupted lavas. The Red Sea Rift provides a unique opportunity to study assimilation of hydrothermally altered crust at an ultra-slow spreading ridge (maximum 1.6 cm yr−1 full spreading rate) by Cl, due to its saline seawater (40–42‰, cf. 35‰ in open ocean water), the presence of (hot) brine pools (up to 270‰ salinity and 68 °C) and the thick evaporite sequences that flank the young rift. Absolute chlorine concentrations (up to 1300 ppm) and Cl concentrations relative to minor or trace elements of similar mantle incompatibility (e.g., K, Nb) are much higher in Red Sea basalts than in basalts from average slow spreading ridges. Mantle Cl/Nb concentrations can be used to calculate the Cl-excess, above the magmatic Cl, that is present in the samples. Homogeneous within-sample Cl concentrations, high Cl/H2O, the decoupling of Cl-excess from other trace elements and its independence of the presence of highly saline seafloor brines at the site of eruption indicate that Cl is not enriched at the seafloor. Instead we find basaltic Cl-excess to be spatially closely correlated with evidence of hydrothermal activity, suggesting that deeper assimilation of hydrothermal Cl is the dominant Cl-enrichment process. A proximity of samples to both evaporite outcrops and bathymetric signs of volcanism on the seafloor enhance Cl-excess in basalts. The basaltic Cl-excess can be used as a tracer together with new bathymetric maps as well as indications of hydrothermal venting (hot brine pools, metalliferous Hydrothermal circulation at mid-ocean ridges and assimilation of hydrothermally altered crust or hydrothermal fluids by rising magma can be traced by measuring chlorine (Cl) excess in erupted lavas. The Red Sea Rift provides a unique opportunity to study assimilation of hydrothermally altered crust at an ultra-slow spreading ridge (maximum 1.6 cm yr−1 full spreading rate) by Cl, due to its saline seawater (40–42‰, cf. 35‰ in open ocean water), the presence of (hot) brine pools (up to 270‰ salinity and 68 °C) and the thick evaporite sequences that flank the young rift. Absolute chlorine concentrations (up to 1300 ppm) and Cl concentrations relative to minor or trace elements of similar mantle incompatibility (e.g., K, Nb) are much higher in Red Sea basalts than in basalts from average slow spreading ridges. Mantle Cl/Nb concentrations can be used to calculate the Cl-excess, above the magmatic Cl, that is present in the samples. Homogeneous within-sample Cl concentrations, high Cl/H2O, the decoupling of Cl-excess from other trace elements and its independence of the presence of highly saline seafloor brines at the site of eruption indicate that Cl is not enriched at the seafloor. Instead we find basaltic Cl-excess to be spatially closely correlated with evidence of hydrothermal activity, suggesting that deeper assimilation of hydrothermal Cl is the dominant Cl-enrichment process. A proximity of samples to both evaporite outcrops and bathymetric signs of volcanism on the seafloor enhance Cl-excess in basalts. The basaltic Cl-excess can be used as a tracer together with new bathymetric maps as well as indications of hydrothermal venting (hot brine pools, metalliferous sediments) to predict where hydrothermal venting or now inactive hydrothermal vent fields can be expected. Sites of particular interest for future hydrothermal research are the Mabahiss Deep, the Thetis-HadarbaHatiba Deeps and Shagara-Aswad-Erba Deeps (especially their large axial domes), and Poseidon Deep. Older hydrothermal vent fields may be present at the Nereus and Suakin Deeps. These sites significantly increase the potential of hydrothermal vent field prospection in the Red Sea.

Description: The deep-sea brines of the Red Sea are unusual extreme environments and form characteristically steep gradients across the brine-seawater interfaces. Due to their unusual nature and unique combination of physical-chemical conditions these interfaces provide an interesting source of new findings in the fields of geochemistry, geology, microbiology, biotechnology, virology, and general biology. The current chapter summarizes recent and new results in the study of geochemistry and life at the interfaces of brine-filled deeps of the Red Sea.

Description: The capability of Time of Flight–Secondary Ion Mass Spectrometry (ToF-SIMS) of analysing molecular archaeal biomarkers in geobiological samples was tested and demonstrated. Using a bismuth cluster primary ion source, isopranyl glycerol di- and tetraether core lipids were detected in small amounts of total organic extracts from methanotrophic microbial mats, simultaneously and without further chemical treatment and chromatographic separation. ToF-SIMS was also employed to track the distribution of fossilized ether lipids in a massive carbonate (aragonite) microbialite that precipitated as a result of the microbial anaerobic oxidation of methane. An unambiguous signal was obtained when analysing a freshly broken rock surface (base of a microdrill core). Though some limitation occurred due to µm-topographical effects (sample roughness), it was possible to display the abundance of high molecular weight (C86) of tetraethers exposed in particular regions of the rock surface. ‘Molecular mapping’ revealed that a part of these molecules was encased within the rock fabric in a cluster-like distribution that might trace the arrangement of the calcifying microbial colonies in the once active mat system. The results reveal promising perspectives of ToF-SIMS for (i) the quasi-nondestructive analysis of lipids in extremely small geobiological samples at low concentrations; (ii) resolving the spatial distribution of these compounds on a µm2- to cm2-scale; and (iii) the more exact assignment of lipid biomarkers to their biological source.

Description: This paper addresses visual navigation of autonomous underwater vehicles (AUVs) with and without a given map, where the latter is called Simultaneous Localization and Mapping (SLAM). We summarize the challenges and opportunities in underwater environments that make visual navigation different from land navigation and also briefly survey the current state-of-the-art in this area. Then as a position paper we argue why many of these challenges could be met by a proper modeling of uncertainties in the SLAM representation. This would in particular allow the SLAM algorithm to thoroughly handle the ambiguity between “I see the same feature again.”, “I see a different but similar looking feature.” and “The environment has changed and the feature moved.”.

Description: Recent surveys of marine microbial diversity have identified a previously unrecognized lineage of diplonemid protists as being among the most diverse heterotrophic eukaryotes in global oceans. Despite their monophyly (and assumed importance), they lack a formal taxonomic description, and are informally known as deep-sea pelagic diplonemids (DSPDs) or marine diplonemids. Recently, we documented morphology and molecular sequences from several DSPDs, one of which is particularly widespread and abundant in environmental sequence data. To simplify the communication of future work on this important group, here we formally propose to erect the family Eupelagonemidae to encompass this clade, as well as a formal genus and species description for the apparently most abundant phylotype, Eupelagonema oceanica, for which morphological information and single-cell amplified genome data are currently available. © 2018 International Society of Protistologists

Description: Spores of the dinoflagellate Chytriodinium are known to infest copepod eggs causing their lethality. Despite the potential to control the population of such an ecologically important host, knowledge about Chytriodinium parasites is limited: we know little about phylogeny, parasitism, abundance, or geographical distribution. We carried out genome sequence surveys on four manually isolated sporocytes from the same sporangium, which seemed to be attached to a copepod nauplius, to analyze the phylogenetic position of Chytriodinium based on SSU and concatenated SSU/LSU rRNA gene sequences, and also characterize two genes related to the plastidial heme pathway, hemL and hemY. The results suggest the presence of a cryptic plastid in Chytriodinium and a photosynthetic ancestral state of the parasitic Chytriodinium/Dissodinium clade. Finally, by mapping Tara Oceans V9 SSU amplicon data to the recovered SSU rRNA gene sequences from the sporocytes, we show that globally, Chytriodinium parasites are most abundant within the pico/nano- and mesoplankton of the surface ocean and almost absent within microplankton, a distribution indicating that they generally exist either as free-living spores or host-associated sporangia. © 2018 International Society of Protistologists

Description: The application of acoustic techniques, such as multibeam echosounders, has permitted the identification of Maltese submarine landscapes and landforms that were progressively inundated during the postglacial sea-level rise. Remarkably, geomorphological features due to fluvial, gravity-induced and karst processes that took place under former subaerial conditions can be clearly recognised on the present seafloor around the Maltese archipelago, and they were only slightly modified by sea action during the postglacial transgression phases. The analysis of the submerged landforms described in this chapter is crucial for understanding the evolution of the Maltese Islands during the last ca. 20,000 years.

Description: The study presents the results of continuous measurements of carbon dioxide concentration in the atmospheric surface layer at Tiksi and Cape Baranov Arctic stations over the period of August 2010–May 2017 and over the whole 2016, respectively. The amplitude of diurnal variations in the CO2 concentration in Tiksi from June to September is 1.1 ± 1.3, 2.4 ± 2.0, 4.1 ± 2.3, and 2.0 ± 2.4 ppm. Diurnal variations in CO2 at Cape Baranov station are absent. The observed seasonal variations in the CO2 concentration are compared with the data of the MBL empirical model for the marine atmospheric boundary layer of the Arctic region. In 2016, the difference between the observed and model concentrations at Tiksi and Cape Baranov stations amounted to 1.7 and 0.5 ppm, respectively, in winter and −3.0 and −1.9 ppm, respectively, in summer. It is shown that wildfires in Siberia caused a long synchronous increase in the CO2 concentration by 20 ppm in Tiksi and by 15 ppm at Cape Baranov station.

Description: The water of Atlantic origin (Atlantic water) is of special importance for the formation of the hydrological regime of the Arctic Ocean and provides a “building material” for the main water masses in the surface and intermediate layers. Atlantic water are structurally included to the Arctic Transpolar System (ATS); it is a multicomponent physical object whose state defines the role of the Arctic Ocean in the planetary climate. The recent advances in the Atlantic water research are discussed, in particular, the role of Atlantic water in the Arctic sea ice reduction. Particular attention is paid to the possible activation of feedbacks in ATS that may result in an accelerated Arctic sea ice loss recorded after 2007.

Description: Three most common Arctic foraminiferal species of the family Cassidulinidae from the Laptev Sea sediment cores were analyzed for paleoenvironmental reconstructions. This paleontological study is focused on morphological characteristics of apertural elements and the wall structure. The species Cassidulina neoteretis is considered an indicator of the Atlantic influence in contrast to the Arctic species Cassidulina reniforme and Islandiella norcrossi.