ALBERT

Description: Structure I methane hydrates are formed in situ from water-in-mineral oil emulsions in a high pressure rheometer cell. Viscosity is measured as hydrates form, grow, change under flow, and dissociate. Experiments are performed at varying water volume fraction in the original emulsion (0–0.40), temperature (0–6 °C), and initial pressure of methane (750–1500 psig). Hydrate slurries exhibit a sharp increase in viscosity upon hydrate formation, followed by complex behavior dictated by factors including continued hydrate formation, shear alignment, methane depletion/dissolution, aggregate formation, and capillary bridging. Hydrate slurries possess a yield stress and are shear-thinning fluids, which are described by the Cross model. Hydrate slurry viscosity and yield stress increased with increasing water volume fraction. As driving force for hydrate formation decreases (increasing temperature, decreasing pressure), hydrate slurry viscosity increases, suggesting that slower hydrate formation leads to larger and more porous aggregates. In total, addition of water to a methane saturated oil can cause more than a fifty-fold increase in viscosity if hydrates form.

Description: Mineral exploration activities require robust predictive models that result in accurate mapping of the probability that mineral deposits can be found at a certain location. Random forest (RF) is a powerful machine data-driven predictive method that is unknown in mineral potential mapping. In this paper, performance of RF regression for the likelihood of gold deposits in the Rodalquilar mining district is explored. The RF model was developed using a comprehensive exploration GIS database composed of: gravimetric and magnetic survey, a lithogeochemical survey of 59 elements, lithology and fracture maps, a Landsat 5 Thematic Mapper image and gold occurrence locations. The results of this study indicate that the use of RF for the integration of large multisource data sets used in mineral exploration and for prediction of mineral deposit occurrences offers several advantages over existing methods. Key advantages of RF include: (1) the simplicity of parameter setting; (2) an internal unbiased estimate of the prediction error; (3) the ability to handle complex data of different statistical distributions, responding to nonlinear relationships between variables; (4) the capability to use categorical predictors; and (5) the capability to determine variable importance. Additionally, variables that RF identified as most important coincide with well-known geologic expectations. To validate and assess the effectiveness of the RF method. Statistical measures of map quality indicate that the RF method performs better than LR, with mean square errors equal to 0.12 and 0.19, respectively. The efficiency of RF is also better, achieving an optimum success rate when half of the area predicted by LR is considered.

Description: Sensitivity of marine crustaceans to anthropogenic CO2 emissions and the associated acidification of the oceans may be less than that of other, especially lower, invertebrates. However, effects on critical transition phases or carry-over effects between life stages have not comprehensively been explored. Here we report the impact of elevated seawater PCO2 values (3100 µatm) on Hyas araneus during the last 2 weeks of their embryonic development (pre-hatching phase) and during development while in the consecutive zoea I and zoea II larval stages (post-hatching phase). We measured oxygen consumption, dry weight, developmental time and mortality in zoea I to assess changes in performance. Feeding rates and survival under starvation were investigated at different temperatures to detect differences in thermal sensitivities of zoea I and zoea II larvae depending on pre-hatch history. When embryos were pre-exposed to elevated PCO2 during maternal care, mortality increased about 60% under continued CO2 exposure during the zoea I phase. The larvae that moulted into zoea II, displayed a developmental delay by about 20 days compared to larvae exposed to control PCO2 during embryonic and zoeal phases. Elevated PCO2 caused a reduction in zoea I dry weight and feeding rates, while survival of the starved larvae was not affected by the seawater CO2 concentration. In conclusion, CO2 effects on egg masses under maternal care carried over to the first larval stages of crustaceans and reduced their survival and development to levels below those previously reported in studies exclusively focussing on acute PCO2 effects on the larval stages.

Description: In complex ecosystem models, relationships between species include a large number of direct interactions and indirect effects. In order to unveil some simple and better understandable relationships, it is useful to study the asymmetry of inter-specific effects. We present a simple approach for this based on stochastic food web simulations from previous studies. We refer to the Prince William Sound (Gulf of Alaska) marine ecosystem model for illustration. Real data were used to parameterize a dynamical food web model. Through simulations and sensitivity analysis, we determined the strength of the effects between all species. We calculated the asymmetry between the mutual effects species have on each other, and selected the top 5% most asymmetrical interactions. The set of these highly asymmetrical relationships is illustrated by a separate graph in which we calculated the positional importance of the species and correlated this to other independent properties such as population size and trophic position. Results suggest that halibut is the key species dominating this system of asymmetrical interactions, but sablefish and adult arrowtooth flounder also seem to be of high importance. Nearshore demersals display the highest number of connections in the graph of asymmetrical links, suggesting that this trophic group regulates the dynamics of many species in the food web. This approach identifies key interactions and most asymmetrical relationships, potentially increasing the efficiency of management efforts and aiding conservation efforts.

Description: Mid-latitudinal cyclones are a key factor for understanding regional anomalies in primary meteorological parameters such as temperature or precipitation. Extreme cyclones can produce notable impacts on human society and economy, for example, by causing enormous economic losses through wind damage. Based on 41 annually initialised (1961–2001) hindcast ensembles, this study evaluates the ability of a single-model decadal forecast system (MPI-ESM-LR) to provide skilful probabilistic three-category forecasts (enhanced, normal or decreased) of winter (ONDJFM) extra-tropical cyclone frequency over the Northern Hemisphere with lead times from 1 yr up to a decade. It is shown that these predictions exhibit some significant skill, mainly for lead times of 2–5 yr, especially over the North Atlantic and Pacific. Skill for intense cyclones is generally higher than for all detected systems. A comparison of decadal hindcasts from two different initialisation techniques indicates that initialising from reanalysis fields yields slightly better results for the first forecast winter (month 10–15), while initialisation based on an assimilation experiment provides better skill for lead times between 2 and 5 yr. The reasons and mechanisms behind this predictive skill are subject to future work. Preliminary analyses suggest a strong relationship of the model’s skill over the North Atlantic with the ability to predict upper ocean temperatures modulating lower troposphere baroclinicity for the respective area and time scales.

Description: The bright colouration of the cytoplasm in intertidal rotaliid foraminifera and their particle-gathering activity reliably reveals live specimens in fresh samples, without any fixatives or dyes applied. Using this approach, we demonstrate that live representatives of three rotaliid species, all belonging to the genus Elphidium, were common on intertidal mud and sand beaches. Two species, E. excavatum clavatum and E. albiumbilicatum, lived close to freshwater outflows, whereas E. williamsoni occupied beaches bathed by waters with normal salinity (surface 26–27‰ in the western White Sea). A least 13 species were found alive in the intertidal zone. Among non-calcareous foraminifera, Miliammina fusca, Ammotium cassis and Ovammina opaca were the most numerous.

Description: According to historical data, the glacial relict higher crustaceans, Mysis relicta and Pallaseopsis quadrispinosa, as well as a plankton crustacean Limnocalanus macrurus had earlier been recorded in Lake Drüksiai. Our data and investigations of other authors evidence that these crustaceans no longer inhabit the lake. What are the prospects for the recovery of these crustaceans after restoring the natural thermal regime in Lake Drüksiai? One of the possibilities is to reintroduce these species after restoring the natural thermal regime in the lake and improving dissolved oxygen level in the hypolimnion, which would provide conditions for long-term survival and recovery of populations of these crustaceans. As reintroduction of relict species is rather costly, it is necessary to assess effectiveness of such works.

Description: Simultaneous analysis of carbon, nitrogen and sulphur stable isotope ratios was applied in this pilot study to examine the food web of a Zostera marina L. system in the western Baltic Sea. Samples of three potential food sources: eelgrass, epiphytic algae and seston, as well as 69 consumer species were collected during the growing season of Z. marina from March to September 2011. The measured δ13C values of epiphytes (-14.1‰ ± 1.8 SD) were close to δ13C values of eelgrass (-11.6‰ ± 1.8 SD), impeding a clear distinction of those two carbon sources, whereas seston δ13C values (-20.9‰ ± 3.5 SD) were clearly different. This frequently encountered problem was solved by the additional use of δ34S, which resulted in easily distinguishable values for sediment and seawater derived sulphur. Values of primary producer δ34S ranged from 5.6‰ (± 2.3 SD) for Z. marina leaves to 14.2‰ (± 1.6 SD) for epiphytes and 11.9‰ (± 3.3 SD) for seston. The combination of δ34S and δ13C values made a separation of carbon sources possible and enabled the allocation of potential food sources to consumers and a description of their trophic relationships. The data of stable isotope ratio analysis of this eelgrass community strongly indicate a food web based on epiphyte and seston production. δ15N values show a food web consisting of large numbers of generalists and a high degree of omnivory amongst the consumer species analysed. This implies an occupation of every trophic position possible, which is supported by a continuous distribution of δ15N values. Previously described eelgrass food webs may have to be re-evaluated to include sulfur in order to provide a clear picture on primary carbon sources.

Description: Simultaneous triple stable isotope analysis of carbon, nitrogen and sulphur was employed to study the temporal variation in the food web of a subtidal eelgrass Zostera marina bed in the western Baltic Sea. Samples of 3 potential food sources (eelgrass, epiphytes and seston) and consumer species were collected biweekly from March through September 2011. Temporal variation of stable isotope compositions was observed in primary producers and consumer species. However, variation between replicates, particularly omnivores, often exceeded variation over time. The high degree of omnivory among the generalist feeders in this eelgrass community allows for generalist feeders to flexibly switch food sources, thus enhancing food-web stability. As coastal systems are subject to seasonal changes, as well as alterations related to human disturbance and climate, these food webs may retain a certain resilience due to their plentiful omnivores.

Description: Cyprinid herpesvirus 3 (CyHV-3) is the aetiological agent of a highly virulent and lethal disease of common carp Cyprinus carpio and its ornamental koi varieties. However, specific knowledge about immune mechanisms behind the infection process is very limited. We aimed to evaluate the effect of the CyHV-3 infection on the profile of 2 major components of the common carp immune acute phase response: the C-reactive protein (CRP) and the complement system. Common carp were infected with CyHV-3 by bath immersion. Fish were sampled before the infection and at 6, 12, 24, 72, 120 and 336 h post-infection for serum and head kidney, liver, gill and spleen tissues. CRP levels and complement activity were determined from the serum, whereas CRP- and complement-related genes (crp1, crp2, c1rs, bf/c2, c3, masp2) expression profiles were analysed in the tissues by quantitative PCR. Both CRP levels and complement activity increased significantly up to 10- and 3-fold, respectively, in the serum of infected fish during the challenge. Analysis revealed distinct organ- and time-dependent expression profile patterns for all selected genes. These results suggest that CRP and complement behave as acute phase reactants to CyHV-3 infection in common carp with an organ- and time-dependent response.

Description: Since the Industrial Revolution, the partial pressure of carbon dioxide (pCO2) has been increasing and global ocean surface waters have absorbed 30% of the anthropogenic CO2 released into the atmosphere. An increase in pCO2 in surface ocean waters causes an increase in bicarbonate ions (HCO3-) and protons (H+) and a decrease in carbonate ions (CO32-), thereby decreasing the pH and the saturation state of the seawater with respect to CO32-. These changes in ocean chemistry (termed ocean acidification) are expected to have negative impacts on marine calcifying organisms. Because calcifying marine primary producers are important to the carbon cycle and rocky shore habitat structure and stability, investigating how they will respond to future oceanic pCO2 levels is a relevant and important topic of research. Due to a recent strong increase in the number of studies investigating the responses of calcifying marine macroalgae to elevated pCO2, this review aims to present the state of knowledge on the response of calcifying macroalgae to ocean acidification alone and in combination with global and local stressors. We discuss the physiological responses of calcifying macroalgae to elevated pCO2 within the contexts biogeography, taxonomy, and calcification mechanisms. Generally, coralline algae that deposit high-Mg calcite are most susceptible to high pCO2, and polar species are particularly at risk. However, some dolomite-depositing species may be able to acclimate to high pCO2. Calcifiers generally show sensitivity to overgrowth and outcompetition by noncalcifying algae when grown under elevated CO2 conditions, and this trend could be amplified under conditions of high inorganic nutrients. However, it still remains unknown whether or not calcifiers will be able to adapt to their rapidly changing environments. We discuss the lack of research on this topic, and provide some suggestions for how this knowledge gap can be filled by future research.

Description: Ocean acidification has the potential to affect growth and calcification of benthic marine invertebrates, particularly during their early life history. We exposed field-collected juveniles of Asterias rubens from Kiel Fjord (western Baltic Sea) to 3 seawater CO2 partial pressure (pCO2) levels (ranging from around 650 to 3500 µatm) in a long-term (39 wk) and a short-term (6 wk) experiment. In both experiments, survival and calcification were not affected by elevated pCO2. However, feeding rates decreased strongly with increasing pCO2, while aerobic metabolism and NH4+ excretion were not significantly affected by CO2 exposure. Consequently, high pCO2 reduced the scope for growth in A. rubens. Growth rates decreased substantially with increasing pCO2 and were reduced even at pCO2 levels occurring in the habitat today (e.g. during upwelling events). Sea stars were not able to acclimate to higher pCO2, and growth performance did not recover during the long-term experiment. Therefore, the top-down control exerted by this keystone species may be diminished during periods of high environmental pCO2 that already occur occasionally and will be even higher in the future. However, some individuals were able to grow at high rates even at high pCO2, indicating potential for rapid adaption. The selection of adapted specimens of A. rubens in this seasonally acidified habitat may lead to higher CO2 tolerance in adult sea stars of this population compared to the juvenile stage. Future studies need to address the synergistic effects of multiple stressors such as acidification, warming and reduced salinity, which will simultaneously impact the performance of sea stars in this habitat.

Description: Microbial aerobic methane oxidation (MOx) is intrinsically coupled to the production of carbon dioxide, favoring carbonate dissolution. Recently, microbial organic polymers were shown to be able to induce carbonate dissolution. To discriminate between different mechanisms causing calcite dissolution, experiments were conducted in the presence of solid calcite with (1) actively growing cells (2) starving cells, and (4) dead cells of the methanotrophic bacterium Methylosinus trichosporium under brackish conditions (salinity 10) near calcite saturation (saturation state (Ω) 1.76 to 2.22). Total alkalinity and the amount of dissolved calcium markedly increased in all experiments containing M. trichosporium cells. After initial system equilibration, similar calcite dissolution rates, ranging between 14.9 (dead cells) and 29.6 μmol l−1 d−1 (actively growing cells), were observed. While concentrations of transparent exopolymer particles declined with time in the presence of actively growing and starving cells, they increased in experiments with dead cells. Scanning electron microscopy images of calcite crystals revealed visible surface corrosion after exposure to live and dead M. trichosporium cells. The results of this study indicate a strong potential for microbial MOx to affect calcite stability negatively, facilitating calcite dissolution. In addition to CO2 production by methanotrophically active cells, we suggest that the release of acidic or Ca2+-chelating organic carbon compounds from dead cells could also enhance calcite dissolution.

Description: Effects of CO2 concentration on elemental composition of the coccolithophore Emiliania huxleyi were studied in phosphorus-limited, continuous cultures that were acclimated to experimental conditions for 30 d prior to the first sampling. We determined phytoplankton and bacterial cell numbers, nutrients, particulate components like organic carbon (POC), inorganic carbon (PIC), nitrogen (PN), organic phosphorus (POP), transparent exopolymer particles (TEP), as well as dissolved organic carbon (DOC) and nitrogen (DON), in addition to carbonate system parameters at CO2 levels of 180, 380 and 750 µatm. No significant difference between treatments was observed for any of the measured variables during repeated sampling over a 14 d period. We considered several factors that might lead to these results, i.e. light, nutrients, carbon overconsumption and transient versus steady-state growth. We suggest that the absence of a clear CO2 effect during this study does not necessarily imply the absence of an effect in nature. Instead, the sensitivity of the cell towards environmental stressors such as CO2 may vary depending on whether growth conditions are transient or sufficiently stable to allow for optimal allocation of energy and resources. We tested this idea on previously published data sets where PIC and POC divided by the corresponding cell abundance of E. huxleyi at various pCO2 levels and growth rates were available.

Description: This study aimed to reveal the dynamics of inducible anti-herbivory traits in the brown seaweed Fucus vesiculosus, in response to grazing by the isopod Idotea baltica. As the molecular basis of defence induction in seaweeds is poorly understood, a transcriptomic approach was used to gain insight into cellular processes underlying defence induction and thus promote the mechanistic understanding of anti-herbivory responses in seaweeds. In a 27 day feeding-assayed induction experiment, temporal patterns of the induced anti-herbivory resistance of F. vesiculosus were assessed under laboratory conditions. Feeding assays were performed at three day intervals, using fresh and reconstituted food. Microarray hybridizations investigating the expression of genes 3 days before, as well as at the same time as, feeding assays revealed a decreased palatability of previously grazed F. vesiculosus pieces compared with non-grazed control pieces. Despite permanent exposure to grazers, F. vesiculosus palatability varied over time. Non-grazed F. vesiculosus pieces were significantly preferred to grazed pieces after 18 and again after 27 days of previous grazing, while their relative palatability for isopods was comparable at all other times during the experiment. Relative to controls, 562/402 genes were ≥ 1.5-fold up-/down-regulated in seaweed pieces that were grazed for 18 days, i.e. when induction of defences was detected in feeding assays. Massive reprogramming of the regulatory expression orchestra (translation, transcription) as well as up-regulation of genes involved in lipid and carbohydrate metabolism, intracellular trafficking, defence and stress response was found. At the same time, down-regulation of photosynthesis was observed in grazed seaweed pieces. This study suggests a high level of temporal variability in induced anti-herbivory traits of F. vesiculosus and reveals increased expression of genes with putative defensive functions in conjunction with the reallocation of resources from primary to secondary metabolism.

Description: The impact of dense saltwater inflows on the phosphorus dynamics in the Baltic Sea is studied from tracer experiments with a three-dimensional physical model. Model simulations showed that the coasts of the North West Gotland Basin and the Gulf of Finland, the Estonian coast in the East Gotland Basin are regions where tracers from below the halocline are primarily lifted up above the halocline. After 1 yr tracers are accumulated at the surface along the Swedish east coast and at the western and southern sides of Gotland. Elevated concentrations are also found east and southeast of Gotland, in the northern Bornholm Basin and in the central parts of the East Gotland Basin. The annual supplies of phosphorus from the deeper waters to the productive surface layers are estimated to be of the same order of magnitude as the waterborne inputs of phosphorus to the entire Baltic Sea. The model results suggest that regionally the impact of these nutrients may be quite large, and the largest regional increases in surface concentrations are found after large inflows. However, the overall direct impact of major Baltic inflows on the annual uplift of nutrients from below the halocline to the surface waters is small because vertical transports are comparably large also during periods without major inflows. Our model results suggest that phosphorus released from the sediments between 60 and 100 m depth in the East Gotland Basin contributes to the eutrophication, especially in the coastal regions of the eastern Baltic Proper.

Description: The spatio-temporal origin of surviving juvenile Baltic cod Gadus morhua was investigated by coupling age information from otolith microstructure analysis and hydrodynamic modeling, which allowed backtracking of drift routes in time and space. The suitability of hydrodynamic modeling for drift simulations of early life stages of Baltic cod up to the pelagic juvenile stage was validated by comparing model simulations with the catch distribution from a survey targeting pelagic juveniles, and mortality rates and hatch date distributions of pelagic and demersal juveniles were estimated. Hatch dates and hatch locations of juvenile survivors showed distinct patterns which did not agree well with the abundance and spatial distribution of eggs, suggesting marked spatio-temporal differences in larval survival. The good agreement of the spatio-temporal origin of survivors from this field investigation with previous modeling studies on the survival chances of early-stage larvae and with general spatio-temporal patterns of larval prey availability suggests that differences in survival are related to food availability during the early larval stage. Results are discussed in relation to the recruitment process of Baltic cod, in particular with respect to the critical period and match-mismatch hypotheses, and to possible implications for the placement of a Marine Protected Area which was established to ensure undisturbed spawning of Baltic cod.

Description: Exogenous electron transfer mediators employed by Fe(III)-reducing bacteria are believed to govern the kinetics and equilibrium of bioreduction of Fe(III) in solid phase. In contrast to a large number of studies on humic substances and analog anthraquinone-2,6-disulfonate (AQDS), our knowledge of other potential electron shuttles involved in Fe(III) reduction is limited. The purpose of the present study was to understand the role of cystine and cysteine in reduction of iron-rich smectite (nontronite, NAu-2) by Shewanella species. A series of abiotic and biotic experiments were conducted in nongrowth media (bicarbonate buffered, pH = 7.0). Fe(II) and cysteine concentrations were monitored over the course of the bioreduction experiments with wet chemistry, and the unreduced and reduced nontronites were characterized by X-ray diffraction (XRD), scanning electron microscopy (SEM) and transmission electron microscopy (TEM). The results indicated that all Shewanella species tested here were capable of reducing cystine to cysteine. Either cystine or cysteine amendments significantly stimulated the Fe(III) bioreduction rate and extent. The initial reduction rate was linearly correlated with cystine or cysteine concentration. The reduction extent (18.7–22.3%) calculated from bioreactor with cystine or cysteine was slightly lower than those with AQDS (26.3%). Mineralogical analysis demonstrated that cystine or cysteine facilitated the reaction of smectite to illite as a result of Fe(III) bioreduction. Thus, we concluded that, in our experiments, cystine and cysteine functioned as electron carrier in the smectite reduction systems, and were favorable factors influencing smectite illitization.

Description: Cyanobacteria (blue-green algae) are the most primitive prokaryotic photosynthetic organisms, that have survived and flourished on the planet for more than 3 billion years and produced the oxygen that enabled aerobic metabolism. Anabaena is a genus of filamentous cyanobacteria, known for its nitrogen fixing abilities and is one of cyanobacterial genera that produce toxins. Because of plasmid DNA, the nontoxic strain of Anabaena flos-aquae, transformed into a toxic strain that producing neuro-toxins. The major toxins those were produced by this species are anatoxin-a, homoanatoxin-a, and anatoxin-a(s). Presence of these toxins in the source of fresh water makes water toxic and every year so many reports on death of animals were documented. Several studies have been done over this toxic cyanobacterium and showed that under controlled environment this species is very useful for human being. However, presence of this alga in the water sources makes environment toxic. Several analytical methods were reported for the detection of these toxins. This review is be focused on the detailed literature survey on fresh water cyanobacterium, Anabaena flos-aquae, with respect to its importance and cure.

Description: Explaining the high variability of regenerative ability across metazoan taxa is one of the major challenges in modern biology. Although common and widespread, regeneration shows a heterogeneous distribution and most authors consider regeneration capacity to be an ancestral trait that has been restricted or completely lost over the course of metazoan evolution. Basal Metazoans show the highest capacity for regeneration. By contrast, this feature is highly variable within bilaterians, with many taxa limited in their capacity for regeneration or not regenerating at all. The causes of the loss and/or maintenance of regeneration remain poorly understood, with most explanations invoking adaptive mechanisms. In the present study Metazoan regeneration is discussed with reference to stem cell biology, tissue plasticity, evolution of tissue complexity, cell turnover and lifespan. The presence or absence of regenerative ability cannot be seen only as an adaptation to a particular environment but can also be a consequence of body plan and developmental constraints such as may arise from the evolution of an adaptive immune system.

Description: Globally, ascidians are a significant contributor to benthic marine fouling communities, but have remained poorly studied in this context. In some cases, such as in shellfish and finfish aquaculture, ascidians are the most problematic of all fouling organisms. The disproportionate impact of ascidian fouling in some specific geographic locations has been related directly to anthropogenic translocation of these organisms around the globe. In the case of ascidians, therefore, the economic issue of biofouling and the ecological ramifications of invasion are inextricably linked. This mini-review briefly discusses the introduction of non-native ascidians to areas where they have subsequently proven to be a significant fouling pest. The elements of ascidian reproductive ecology that support their aggressive fouling character are discussed and the scant information pertaining to their adhesion and adhesives is presented. Finally, strategies for mitigating ascidian fouling are examined. It is suggested that sufficient working knowledge currently exists to support the inclusion of one or more common ascidian species as ‘standard’ test organisms used for evaluation of novel fouling-resistant surfaces.

Description: One new imidazole derivative alkaloid pelopuradazole (1), together with three known alkaloids as in 3H-imidazole-4-carboxylic acid (2), 1H-pyrrole-2-carboxylic acid (3) and 2-methyl-3H-imidazole-4-carboxylic acid (4) and two known cyclo-dipeptides pelopurin A (5) and pelopurin B (6), has been isolated from the marine bacterium Pelomonas puraquae sp. nov. Pelopuradazole (1) was a new imidazole derivative alkaloid, while compounds 2, 3, 5 and 6 were firstly obtained as natural products. Compounds 1–6 were isolated from P. puraquae sp. nov. for the first time.

Description: We investigated potential connections over the past 2 decades between mesoscale circulation regimes in the Ionian Sea and newly-observed species and the concurrent rise in sea temperature in the Adriatic Sea. Analyses of plankton samples from 1993 to 2011 in the southern Adriatic revealed marked changes in the non-crustacean zooplankton community. Eleven species were recorded for the first time in the Adriatic, while 3 species reappeared after years of absence. We found that pluriannual changes in the zooplankton community tracked the continuum of circulation regimes in the Northern Ionian Gyre (NIG). The occurrence of Atlantic/Western Mediterranean species coincided with anti-cyclonic circulation in the NIG, probably due to the advection of Modified Atlantic Water into the Adriatic, while the presence of Lessepsian species coincided with the cyclonic pattern, which governs the entry of Eastern Mediterranean waters. The impact has been that newcomers now make a significant contribution to the zooplankton community in the southern Adriatic and, in certain cases, have replaced native species. Our results provide new evidence of the influence of teleconnection processes between the North Atlantic and Eastern Mediterranean on the dynamics of water masses in the southern Adriatic. The synergistic effects of these processes, together with warmer Mediterranean waters, raise concerns over dramatic changes in the marine biodiversity of the Adriatic.

Description: Cyanobacteria (blue-green algae) are the most primitive prokaryotic photosynthetic organisms, that have survived and flourished on the planet for more than 3 billion years and produced the oxygen that enabled aerobic metabolism. Anabaena is a genus of filamentous cyanobacteria, known for its nitrogen fixing abilities and is one of cyanobacterial genera that produce toxins. Because of plasmid DNA, the nontoxic strain of Anabaena flos-aquae, transformed into a toxic strain that producing neuro-toxins. The major toxins those were produced by this species are anatoxin-a, homoanatoxin-a, and anatoxin-a(s). Presence of these toxins in the source of fresh water makes water toxic and every year so many reports on death of animals were documented. Several studies have been done over this toxic cyanobacterium and showed that under controlled environment this species is very useful for human being. However, presence of this alga in the water sources makes environment toxic. Several analytical methods were reported for the detection of these toxins. This review is be focused on the detailed literature survey on fresh water cyanobacterium, Anabaena flos-aquae, with respect to its importance and cure.

Description: Our understanding of the fundamental regulatory roles that tyrosine phosphatases play within cells has advanced significantly in the last two decades. Out-dated ideas that tyrosine phosphatases acts solely as the “off” switch counterbalancing the action of tyrosine kinases has proved to be flawed. PTP1B is the most characterized of all the tyrosine phosphatases and it acts as a critical negative and positive regulator of numerous signaling cascades. PTP1B’s direct regulation of the insulin and the leptin receptors makes it an ideal therapeutic target for type II diabetes and obesity. Moreover, the last decade has also seen several reports establishing PTP1B as key player in cancer serving as both tumor suppressor and tumor promoter depending on the cellular context. Despite many key advances in these fields one largely ignored area is what role PTP1B may play in the modulation of immune signaling. The important recognition that PTP1B is a major negative regulator of Janus kinase – signal transducer and activator of transcription (JAK-STAT) signaling throughout evolution places it as a key link between metabolic diseases and inflammation, as well as a unique regulator between immune response and cancer. This review looks at the emergence of PTP1B through evolution, and then explore at the cell and systemic levels how it is controlled physiologically. The second half of the review will focus on the role(s) PTP1B can play in disease and in particular its involvement in metabolic syndromes and cancer. Finally we will briefly examine several novel directions in the development of PTP1B pharmacological inhibitors.

Description: The changes in global temperatures as a result of carbon dioxide (CO2) emissions has suggested that cumulative CO2 emissions will continue to increase over time. Many countries are looking for ways to reduce or alter the amount of CO2 harming our environment; therefore, this review is a compilation of CO2 adsorption on biomass-derived-biochar (BDB). This suggests that effective measures to mitigate the risk of dangerous climate change will need to limit cumulative emissions of CO2. Further, if cumulative CO2 emissions overshoot acceptable limits, it will become necessary to remove CO2 from the air, that is, the so-called “negative emissions.” In this review, we discuss the definitions and classes of technologies for capturing CO2 from the air and the application of biochar in the improvement of soil fertility. We also discuss the economic tradeoff between biochar and bio-oil, agricultural nutrient leaching, the novel magnetic property of biochar and its durability.

Description: Many Penicillium species produce enzyme systems with good performances in lignocellulose degradation. In our laboratory, lignocellulolytic enzyme-producing Penicillium oxalicum (formerly classified as Penicillium decumbens) strains have been studied for more than 30 years. High cellulase-producing mutants have been obtained through random mutagenesis and genetic engineering, and the components in the enzyme systems have been elucidated using systems biology tools. The effects of different carbon sources on the production level of lignocellulolytic enzymes have been studied, and the related molecular mechanisms have been investigated. When compared with the widely used cellulase producer Trichoderma reesei, some unique features have been found in P. oxalicum, including higher β-glucosidase activity, higher numbers of lignocellulolytic enzyme gene, and different response of cellulase gene expression to some disaccharides. To boost the economic potential of the biorefineries using lignocellulosic biomass, P. oxalicum strains need to be further improved regarding the performance and production level of the enzyme systems.

Description: Cytochromes P450 (P450) and associated monooxygenases are a family of heme proteins involved in metabolism of endogenous compounds (arachidonic acid, eicosanoids and prostaglandins) as also xenobiotics including drugs and environmental chemicals. Liver is the major organ involved in P450-mediated metabolism and hepatic enzymes have been characterized. Extrahepatic organs, such as lung, kidney and brain have the capability for biotransformation through P450 enzymes. Brain, including human brain, expresses P450 enzymes that metabolize xenobiotics and endogenous compounds. AREAS COVERED: An overview of P450-mediated metabolism in brain is presented focusing on distinct differences seen in expression of P450 enzymes, generation of unique P450 enzymes in brain through alternate splicing and their consequences in terms of metabolism of psychoactive drugs and inflammatory prompts, such as leukotrienes, thus modulating inflammatory response. EXPERT OPINION: The brain possesses unique P450s that metabolize drugs and endogenous compounds through pathways that are markedly different from that seen in liver indicating that extrapolation directly from liver to brain is not appropriate. It is therefore necessary to characterize the unique brain P450s and their ability to metabolize xenobiotics and endogenous compounds to better understand the functions of this important class of enzymes in brain, especially human brain.

Description: The important role of marine epibiotic biofilms in the interactions of the host with its environment has been acknowledged recently. Previous studies with the temperate brown macroalga Fucus vesiculosus have identified polar and non-polar compounds recovered from the algal surface that have the potential to control such biofilms. Furthermore, both the fouling pressure and the composition of the epibiotic bacterial communities on this macroalga varied seasonally. The extent to which this reflects a seasonal fluctuation of the fouling control mechanisms of the host is, however, unexplored in an ecological context. The present study investigated seasonal variation in the anti-settlement activity of surface extracts of F. vesiculosus against eight biofilm-forming bacteria isolated from rockweed-dominated habitats, including replication of two populations from two geographically distant sites. The anti-settlement activity at both sites was found to vary temporally, reaching a peak in summer/autumn. Anti-settlement activity also showed a consistent and strong difference between sites throughout the year. This study is the first to report temporal variation of antifouling defence originating from ecologically relevant surface-associated compounds.

Description: During the past few decades, the green crab Carcinus maenas, a native to Europe, has invaded the North American Pacific coast. In this new habitat, C. maenas encounters North American periwinkles of the genus Littorina that differ from European Littorina spp. in size, shape and shell strength. We hypothesize that the ability to handle prey never encountered previously is a prerequisite for successful invasion of novel habitats. In a first approach to testing our hypothesis, we compared European (native) to Canadian (invaded) C. maenas in feeding trials with Littorina spp. from Europe as well as Canada. Canadian crabs had significantly larger crusher claws than European crabs of the same size. Prey handling by Baltic crabs, but not by North Sea crabs, significantly depended on shell morphometry and strength of European periwinkles. By contrast, neither European nor Canadian crabs were affected by shell characteristics of the relatively soft-shelled Canadian periwinkles. Baltic and Canadian crabs did not differ in terms of handling time for, and handling success of, different periwinkle species, but North Sea crabs needed more time for, and were less successful in, crushing periwinkles. We conclude that C. maenas exhibits plasticity in both claw morphometry and feeding behaviour that enables this predator to handle novel prey organisms, and contributes to its success as an invader.

Description: The copepod family Oncaeidae is widely distributed in the world's oceans and includes many small and abundant species. Due to their small size and the existence of sister and sibling species in different parts of the ocean, species identification is very difficult. Quantitative studies on copepod communities usually consider oncaeids at the family level only, or present uncertain species names, when based on regional identification keys not established for the study area. This paper aims to develop the basis for an improved taxonomic resolution of oncaeids in ecological studies. It summarizes the most relevant morphological elements to characterize the seven presently known genera and to define in addition 16 species groups within the paraphyletic taxon Oncaea s.l. On this basis, a worldwide identification key for oncaeids is presently being developed, restricted to genera and species groups, with species included as far as the state of knowledge allows.

Description: Bacteria associated with Fucus vesiculosus and Delesseria sanguinea, two macroalgae from the Kiel Fjord were investigated seasonally over two years by cultivation-based methods. A total of 166 bacterial strains were isolated from the macroalgae, affiliated to seven classes of bacteria (Actinobacteria, Bacilli, Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Cytophagia and Flavobacteria). According to 16S rRNA gene sequence similarities they were arranged in 82 phylotypes of〉99.0% sequence identity. Assuming that chemical factors rule the bacteriamacroalga and bacteriabacteria interactions on algal surfaces, we tested the antibiotic activity of the bacterial isolates not only against a panel of four standard test organisms (Bacillus subtilis, Candida glabrata, Escherichia coli and Staphylococcus lentus) but also four macroalga-associated microorganisms: Algicola bacteriolytica and Pseudoalteromonas elyakovii (macroalgal pathogens), and Bacillus algicola and Formosa algae (strains associated with algal surfaces). Organic extracts of more than 51% of the isolates from the two macroalgae inhibited the growth of at least one of the tested microorganisms. As much as 46% and 45% of the isolates derived from F. vesiculosus and D. sanguinea, respectively, showed antimicrobial activity against the set of macroalga-associated bacteria, compared with 13 and 19% against a standard set of microorganisms. High antibacterial activity against macroalgal pathogens and bacterial competitors support the assumption that complex chemical interactions shape the relationships of bacteria associated with macroalgae and suggest that these bacteria are a rich source of antimicrobial metabolites.

Description: Climate change has the potential to profoundly influence the community structure and function of marine ecosystems. Prior to testing the consequences of altered environmental conditions on ecosystem functioning, it is first necessary to better understand how the functioning of an ecosystem is affected by its structure. Using phytoplankton communities with 4 naturally co‑occurring coccolithophores including species of Emiliania, Gephyrocapsa, and Calcidiscus collected off the Azores, we experimentally tested whether varying initial dominance leads to different competitive outcomes and consequently affects community functioning, such as biomass and carbon accumulation. We manipulated initial community structure by creating 5 different dominance scenarios: (1) all species contributing evenly to total initial biomass, and (2–5) one of each species contributing 4× that of the remaining 3 species to total initial biomass. All 4 species were simultaneously grown in monocultures starting with the same total initial biomass as the communities. Monocultures differed significantly in total final biomass, particulate inorganic carbon, and particulate organic carbon content. Priority effects in the communities caused the initially dominant species to remain dominant during the stationary phase in 3 out of 4 cases. However, despite varying dominant species and different outcomes in the monocultures, community functioning was unaffected. We suggest that selective and facilitative effects are responsible for the equalization of community functioning. We conclude that monoculture experiments are not sufficient to predict whole-community responses, since species interactions can significantly alter the expected functional outcome.

Description: Droop’s cell-quota model is the most successful description of phytoplankton growth in laboratory cultures and is increasingly being introduced into the ecosystem components of biogeochemical models. Although the Droop model’s parameters can be easily interpreted in biological terms, it was nevertheless derived empirically and lacks a sound mechanistic foundation. Here we derive Droop’s model from a simple optimality condition which maximises net growth rate. Our approach links the maximum cell quota to the cost of nutrient acquisition and suggests that respiration is influenced more strongly by C fixation than by N assimilation.

Description: The growth and development of the aragonitic CaCO3 otoliths of teleost fish could be vulnerable to processes resulting from ocean acidification. The potential effects of an increase in atmospheric CO2 on the calcification of the otoliths were investigated by rearing Atlantic cod Gadus morhua L. larvae in 3 pCO2 concentrations—control (370 µatm), medium (1800 µatm) and high (4200 µatm)—from March to May 2010. Increased otolith growth was observed in 7 to 46 d post hatch (dph) cod larvae at elevated pCO2 concentrations. The sagittae and lapilli were usually largest in the high pCO2 treatment followed by the medium and control treatments. The greatest difference in mean otolith surface area (normalized to fish length) was for sagittae at 11 dph, with medium and high treatments being 46 and 43% larger than the control group, respectively. There was no significant pCO2 effect on the shape of the otoliths nor were there any trends in the fluctuating asymmetry, defined as the difference between the right and left sides, in relation to the increase in otolith growth from elevated pCO2.

Description: Differences with respect to anti-herbivore defense were investigated in invasive and native populations of the seaweed Gracilaria vermiculophylla. Specimens from 6 native populations in East Asia and from 8 populations invasive in Europe and the Mexican Pacific coast were maintained under identical conditions and offered to herbivorous snails from both the native range (Littorina brevicula) and Europe (L. littorea) in no-choice feeding assays. L. brevicula consumed in total significantly larger amounts of G. vermiculophylla tissue than did L. littorea. Further, both snail species least consumed the seaweed specimens originating from either non-native populations or from populations native to the Korean East Sea/Sea of Japan. The Korean East Sea/Sea of Japan had previously been identified as putative donor region of all the invasive populations of G. vermiculophylla. Thus, populations in the donor region as well as non-native populations in different invaded realms feature an increased capacity to resist feeding pressure. Differences in nutrient content did not account for the observed patterns of consumption, as palatability and carbon to nitrogen (C:N) ratio were not significantly correlated. Thus, mechanical or chemical defenses or the content of feeding cues influenced the behavior of the snails. We suggest that low palatability contributed to the invasion success of the species.

Description: We compared pelagic copepod communities at three (400+ m) stations adjacent to Scott Reef (14°S), a shelf-break reef in Australia's Indian Ocean territory, with those within the shallow (c.50 m) atoll lagoon. The metazooplankton assemblage sampled by our 100-μm multinet system was dominated by small (〈 1.0 mm) copepods. We identified over 220 copepod species, belonging to five of the nine orders. Of these, 68 (31%) are new records for Australian waters and at least 14 are likely to be undescribed. Redundancy analysis indicated that depth stratum was the most important determinant of community structure: distinct communities were associated with the epipelagic (within which the atoll lagoon community was further distinguished by reef-associated copepods), the chlorophyll maximum/thermocline, the upper mesopelagic and the hyper-benthos. The family Oncaeidae was highly speciose (〉 52 taxa) and progressively more important with increasing depth.

Description: We present a new method for the statistical downscaling of coarse-resolution General Circulation Model (GCM) fields to predict local climate change. Most atmospheric variables have strong seasonal cycles. We show that the prediction of the non-seasonal variability of maximum and minimum daily surface temperature is improved if the seasonal cycle is removed prior to the statistical analysis. The new method consists of three major steps. First, the average seasonal cycles of both predictands and predictors are removed. Second, a principal component-based multiple linear regression model between the deseasonalized predictands and predictors is developed and validated. Finally, the regression is used to make projections of future changes in maximum and minimum daily surface temperature at Shearwater, Nova Scotia. This projection is made using the local grid-scale variables of the Canadian General Circulation Model Version 3 (CGCM3) climate model as predictors. Our statistical downscaling method indicates significant skill in predicting the observed distribution of temperature using GCM predictors. Projections suggest minimum and maximum temperatures at Shearwater will be up to about five degrees warmer by 2100 under the current “business-as-usual” scenario. RÉSUMÉ [Traduit par la rédaction] Nous présentons une nouvelle méthode pour la réduction d'échelle statistique des champs des modèles de circulation générale (MCG) à faible résolution pour prévoir les changements du climat local. La plupart des variables atmosphériques ont des cycles saisonniers bien marqués. Nous démontrons que la prédiction de la variabilité non saisonnière de la température de surface quotidienne minimum et maximum est meilleure si on retranche le cycle saisonnier avant de procéder à l'analyse statistique. Voici les trois grandes étapes de cette nouvelle méthode. D'abord, nous retirons les cycles saisonniers moyens des prédictants et des prédicteurs. Ensuite, nous concevons et validons un modèle de régression linéaire multiple sur composantes principales entre les prédictants et les prédicteurs désaisonnalisés. Enfin, nous nous servons de la régression afin d'établir des projections pour les changements à venir dans la température de surface quotidienne minimum et maximum à Shearwater en Nouvelle-Écosse. Cette projection est établie au moyen des variables locales à l'échelle du maillage de la troisième version du modèle canadien de circulation générale (MCCG3). Notre méthode de réduction d'échelle statistique se révèle très efficace pour prédire la répartition observée de la température au moyen des prédicteurs du MCG. D'après les projections, les températures minimum et maximum à Shearwater connaîtront une augmentation d'environ cinq degrés d'ici 2100 dans le scénario actuel de type « statu quo ».

Description: Eighteen deep-sea ferromanganese crusts (Fe-Mn crusts) from 10 seamounts in the northeast Atlantic were studied. Samples were recovered from water depths of 1,200 to 4,600 m from seamounts near Madeira, the Canary and Azores islands, and one sample from the western Mediterranean Sea. The mineralogical and chemical compositions of the samples indicate that the crusts are typical continental margin, hydrogenetic Fe-Mn crusts. The Fe-Mn crusts exhibit a Co + Cu + Ni maximum of 0.96 wt%. Platinum-group element contents analyzed for five samples showed Pt contents from 153 to 512 ppb. The resource potential of Fe-Mn crusts within and adjacent to the Portuguese Exclusive Economic Zone (EEZ) is evaluated to be comparable to that of crusts in the central Pacific, indicating that these Atlantic deposits may be an important future resource.

Description: Repeated invasions of European waters by the ctenophore Mnemiopsis leidyi offer a unique opportunity to study population dynamics and dispersal in gelatinous zooplankton. Here we followed population establishment in two recently invaded areas, the North and Baltic Sea, and analysed changes in population structure during a 3-yr interval using 7 highly polymorphic microsatellites (representing 191 alleles). A second goal was to reconstruct routes of recent invasive range expansion into the Mediterranean Sea During the study period (2008-2010) populations in North Sea and Western Baltic Sea maintained their allelic composition with virtually unchanged levels of genetic diversity and between-population differentiation. This demonstrates that gene flow between the two regions was limited and indicates successful reproduction in both areas. In contrast, at the eastern distribution limit in the central Baltic (Bornholm Basin) the same measures fluctuated between years and genetic diversity decreased from 2008-2010. In concordance with prior ecological observations, this supports the view that here M. leidyi formed a sink population. In the area of recent range expansion (Mediterranean Sea) we observed high population differentiation for a holoplanktonic species. Among Mediterranean samples collected at sites in Spain, France and Israel pairwise differentiation was between Fst = 0.04-0.16. Despite such differentiation, Bayesian clustering and phylogeographic analysis support the hypothesis that all Mediterranean M. leidyi result from a secondary introduction originating in the Black Sea. Our study contributes to growing evidence that multiple invasions of the same species can vary in their degree of genetic diversity and demonstrates how genetic markers can help to resolve whether gelatinous plankton species form self-sustaining populations.

Description: Changing seawater chemistry towards reduced pH as a result of increasing atmospheric carbon dioxide (CO2) is affecting oceanic organisms, particularly calcifying species. Responses of non-calcifying consumers are highly variable and mainly mediated through indirect ocean acidification effects induced by changing the biochemical content of their prey, as shown within single species and simple 2-trophic level systems. However, it can be expected that indirect CO2 impacts observed at the single species level are compensated at the ecosystem level by species richness and complex trophic interactions. A dampening of CO2-effects can be further expected for coastal communities adapted to strong natural fluctuations in pCO2, typical for productive coastal habitats. Here we show that a plankton community of the Kiel Fjord was tolerant to CO2 partial pressure (pCO2) levels projected for the end of this century (〈1400 µatm), and only subtle differences were observed at the extremely high value of 4000 µatm. We found similar phyto- and microzooplankton biomass and copepod abundance and egg production across all CO2 treatment levels. Stoichiometric phytoplankton food quality was minimally different at the highest pCO2 treatment, but was far from being potentially limiting for copepods. These results are in contrast to studies that include only a single species, which observe strong indirect CO2 effects for herbivores and suggest limitations of biological responses at the level of organism to community. Although this coastal plankton community was highly tolerant to high fluctuations in pCO2, increase in hypoxia and CO2 uptake by the ocean can aggravate acidification and may lead to pH changes outside the range presently experienced by coastal organisms.

Description: A new species of Triconia in the family Oncaeidae, Triconia pacifica sp. nov., and a new form variant each of Triconia giesbrechti Bottger-Schnack and Triconia elongata Bottger-Schnack are described from two sites in the Pacific. Triconia pacifica can be distinguished from its sibling Triconia dentipes (Giesbrecht) by (1) morphometric characters, including the proportional lengths of distal endopod spines of swimming leg 4, and the relative length of the outer basal seta on P5, and by (2) a number of micro-structures on the appendages. The Pacific specimens of T.elongata and T.giesbrechti resemble the typical forms in morphometric characters, with some minor differences in proportional spine lengths on the swimming legs, and differ in a few micro-structures. The hitherto unknown male of T.giesbrechti is newly described. For all species/forms described, the intraspecific variability of proportional spine lengths on the endopods of P2-P4 is examined and discussed

Description: The notion that excess phosphorus (P) and high irradiance favour pelagic diazotrophy is difficult to reconcile with diazotroph behaviour in laboratory experiments and also with the observed distribution of N2-fixing Trichodesmium, e.g. in the relatively nitrogen (N)-rich North Atlantic Ocean. Nevertheless, this view currently provides the state-of-the-art framework to understand both past dynamics and future evolution of the oceanic fixed N inventory. In an attempt to provide a consistent theoretical underpinning for marine autotrophic N2 fixation we derive controls of diazotrophy from an optimality-based model that accounts for phytoplankton growth and N2 fixation. Our approach differs from existing work in that conditions favourable for diazotrophy are not prescribed but emerge, indirectly, from trade-offs among energy and cellular resource requirements for the acquisition of P, N, and carbon. Our model reproduces laboratory data for a range of ordinary phytoplankton species and Trichodesmium. The model predicts that (1) the optimal strategy for facultative diazotrophy is switching between N2 fixation and using dissolved inorganic nitrogen (DIN) at a threshold DIN concentration; (2) oligotrophy, especially in P and under high light, favours diazotrophy; (3) diazotrophy is compatible with DIN:DIP supply ratios well above Redfield proportions; and (4) communities of diazotrophs competing with ordinary phytoplankton decouple emerging ambient and supply DIN:DIP ratios. Our model predictions appear in line with major observed patterns of diazotrophy in the ocean. The predicted importance of oligotrophy in P extends the present view of N2 fixation beyond a simple control by excess P in the surface ocean.

Description: Atmospheric dust and clouds modify the spectral distribution of the incident solar radiation. The influence of these spectral effects on the determination of chlorophyll-a concentration from the sea surface and remotely sensed radiation measurements made from ships, aircrafts or satellites was studied in the region off Northwest Africa in the Atlantic Ocean. The chlorophyll-a algorithms that are typically used in ocean colour community are based on ratios of reflectance values of different wavelengths. This fact, together with the wavelength dependent effect of atmospheric dust and clouds, causes uncertainties in the estimation of chlorophyll-a concentration. The most frequently used Morel, OC4v4 and OC3M chlorophyll-a algorithms were included in the investigation. The highest and the smallest uncertainties were found for the Morel and the OC3M algorithms, respectively. For the first time, sky conditions with dust and clouds together in the atmosphere were studied. Overestimations of the chlorophyll-a concentration of up to 8.8% were observed in the case of dusty skies without clouds. The concentration was also overestimated between 7.6% and 14.3% for skies with mixtures of dust and clouds increasing the solar irradiance. Underestimations of up to 24.1% and overestimations of up to 12.2% were found for skies with mixtures of dust and clouds decreasing the solar irradiance. Compensations of the influences of spectral effects were observed at special ratios of clouds to dust. Earlier results in relation to the impact of clouds on the estimation of chlorophyll-a concentration were verified. The spectral effects of cloudy skies cannot be neglected because it may result in an error of up to 40% of the estimated value.

Description: Species identification based on morphological characteristics has caused misidentifications and led to twisted views of abundances and roles of ctenophores. Based on extensive field studies from 2007 to 2010, the occurrence of the arctic ctenophore Mertensia ovum was genetically verified in the southern, central and northern Baltic Sea, and its egg production, distribution and abundance were studied in relation to physical factors. Genetic analyses indicate that M. ovum is by far the most abundant small ctenophore in the Baltic Sea. Specimens from a 20 yr old ctenophore collection were also genetically identified as M. ovum, contrary to their previous morphological identification as another ctenophore species, Pleurobrachia pileus. Thus, earlier reports on P. pileus in the Baltic Sea may actually refer to M. ovum. The abundance of M. ovum was regulated by both salinity and temperature, with highest abundances found in sea areas and water layers at temperatures 〈7°C, salinities 〉5.5 and oxygen levels 〉4 ml l-1. During summer, the highest abundances of ctenophores and their eggs were found near the halocline, while the distribution was more uniform throughout the water column during winter. Only ctenophores 〉3.5 mm (oral-aboral length) produced eggs in the experiments, with an average rate of 2.2 eggs ind.-1 d-1. Finally, comparison with published data from the 1980s (assuming that those data refer to M. ovum) indicates that the present-day ctenophore abundance is ~80% lower in the north and ~55% higher in the southern parts of the Baltic Sea, due to reasons yet to be established.

Description: Coral reefs are under threat, exerted by a number of interacting effects inherent to the present climate change, including ocean acidification and global warming. Bioerosion drives reef degradation by recycling carbonate skeletal material and is an important but understudied factor in this context. Twelve different combinations of pCO2 and temperature were applied to elucidate the consequences of ocean acidification and global warming on the physiological response and bioerosion rates of the zooxanthellate sponge Cliona orientalis—one of the most abundant and effective bioeroders on the Great Barrier Reef, Australia. Our results confirm a significant amplification of the sponges’ bioerosion capacity with increasing pCO2, which is expressed by more carbonate being chemically dissolved by etching. The health of the sponges and their photosymbionts was not affected by changes in pCO2, in contrast to temperature, which had significant negative impacts at higher levels. However, we could not conclusively explain the relationship between temperature and bioerosion rates, which were slightly reduced at both colder as well as warmer temperatures than ambient. The present findings on the effects of ocean acidification on chemical bioerosion, however, will have significant implications for predicting future reef carbonate budgets, as sponges often contribute the lion’s share of internal bioerosion on coral reefs.

Description: Pelagic zooplankton were monitored from 2000 to 2012 at a permanent location near the Svalbard archipelago, at the boundary between the central Arctic Ocean and the Greenland Sea in the eastern Fram Strait. The temporal results reveal the first evidence of successful reproduction in Arctic waters by an Atlantic pelagic crustacean from temperate waters. The Atlantic hyperid amphipod Themisto compressa is shown to have expanded its range from more southerly and warmer waters from 2004 onwards. Successful reproductive activity by T. compressa in Arctic waters was confirmed in 2011, indicated by the presence of a complete temporal series of developmental stages including ovigerous females and recently hatched juveniles. The Arctic amphipod community is currently in transition and a continuing northward spread of southern invaders could cause a biodiversity shift from large Arctic to smaller Atlantic species.

Description: To accurately assess community composition of invertebrates, both active and dormant life stages should be considered. Dormant stages are typically produced as a strategy to overcome inhospitable environmental conditions and can also facilitate species dispersal. While they often sink and accumulate in sediment of natural habitats forming ‘egg banks,’ dormant stages are also found in the sediments accumulated in ships’ ballast tanks. Recent studies have used 2 different methods to separate dormant stages from ballast sediment to assess invasion risk associated with ballast tanks: the colloidal silica sol Ludox HS 40 and sugar flotation (i.e. the Onbé-Marcus method). It has been assumed that the Ludox HS 40 method is most effective for separation but reduces dormant stage viability whereas sugar flotation has lower separation efficacy but higher resulting viability. We conducted a comparative assessment of the 2 methods by separating dormant stages from 160 ballast sediments and examining resulting abundance counts, hatching results, DNA extractions and PCR amplifications. We found no difference in the results between the methods. The financial cost of sugar flotation is lower than that of Ludox HS 40, and costs can be further reduced by using only 1 method instead of both due to lower labour costs, particularly for a large number of samples.

Description: The Kasatochi volcanic eruption that occurred in the central Aleutian Islands in Alaska, USA, in August 2008 is thought to have induced a massive diatom bloom in the iron-limited waters of the Gulf of Alaska, which potentially affected the oceanic food web by increasing the abundance of zooplankton and sockeye salmon Oncorhynchus nerka in the northeast Pacific Ocean. We report the first seawater experiments involving volcanic ash ejected from the Kasatochi eruption, showing that the ash released 61 to 83 nmol Fe, 374 to 410 nmol NO3-, 5 to 6 nmol PO43- and 170 to 585 nmol SiO2 when it contacted seawater. Our study suggests that the amount of iron released from Kasatochi ash (an increase of 2.0 to 2.8 nM Fe) was indeed sufficient to cause the observed phytoplankton bloom in the northeastern Pacific Gyre, while the impact of macronutrient release was minimal. We further evaluated the multiple, interdependent processes in the oceanic food web related to the diatom bloom, involving the ocean survival of juvenile salmon that entered the northeast Pacific Ocean in the summer of 2008.

Description: Concentrations of heme b, the ironcontaining prosthetic group of many hemoproteins, were measured in 6 species of marine phytoplankton (Dunaliella tertiolecta, Emiliania huxleyi, Thalassio - sira weissflogii, T. oceanica, Phaeodactylum tricor - nutum and Synechococcus sp. WH7803) that were subjected to variations in iron concentration. Changes in heme b in response to reduced light and nitrate were also ex amined for E. huxleyi and T. oceanica. Results from laboratory cultures were compared with heme b determined in particulate material in the North Atlantic. In cultures, heme b made up 18 ± 14% (SE) of the total iron pool. Reduced iron and nitrate concentrations resulted in a decreased intracellular heme b concentration, expressed as per mole carbon. Chlorophyll a (chl a) to heme b ratios in E. huxleyi and D. tertiolecta in creased in response to limited light and nutrient availability, but slightly decreased or did not change in the diatoms and the cyanophyte Synechococcus sp. WH7803. The heme b:particulate organic carbon (POC) and chl a:heme b ratios in the North Atlantic were within the range observed in phytoplankton cultures. In the surface mixed layer, decreases in heme b:POC ratios were linked to decreases in nutrient concentrations. Chl a:heme b ratios increased with depth and were thus primarily affected by light availability. Relative relationships between heme b, chl a and POC in the North Atlantic likely represented a change in the ability of cells to undertake cellular processes driven by chl a (light harvesting) and heme b (e.g. electron transport) according to ambient light and nutrient conditions.

Description: Recent studies have discussed the consequences of ocean acidification for bacterial processes and diversity. However, the decomposition of complex substrates in marine environments, a key part of the flow of energy in ecosystems, is largely mediated by marine fungi. Although marine fungi have frequently been reported to prefer low pH levels, this group has been neglected in ocean acidification research. We present the first investigation of direct pH effects on marine fungal abundance and community structure. In microcosm experiments repeated in 2 consecutive years, we incubated natural North Sea water for 4 wk at in situ seawater pH (8.10 and 8.26), pH 7.82 and pH 7.67. Fungal abundance was determined by colony forming unit (cfu) counts, and fungal community structure was investigated by the culture-independent fingerprint method Fungal Automated Ribosomal Intergenic Spacer Analysis (F-ARISA). Furthermore, pH at the study site was determined over a yearly cycle. Fungal cfu were on average 9 times higher at pH 7.82 and 34 times higher at pH 7.67 compared to in situ seawater pH, and we observed fungal community shifts predominantly at pH 7.67. Currently, surface seawater pH at Helgoland Roads remains 〉8.0 throughout the year; thus we cannot exclude that fungal responses may differ in regions regularly experiencing lower pH values. However, our results suggest that under realistic levels of ocean acidification, marine fungi will reach greater importance in marine biogeochemical cycles. The rise of this group of organisms will affect a variety of biotic interactions in the sea.

Description: Marine algae have emerged as an alternative feedstock for the production of a number of renewable fuels, including biogas. In addition to energy potential, other characteristics make them attractive as an energy source, including their ability to absorb carbon dioxide (CO2), higher productivity rates than land-based crops and the lack of water use or land competition. For Ireland, biofuels from marine algae can play an important role by reducing imports of fossil fuels as well as providing the necessary energy in rural communities. In this study, five potential seaweed species common in Irish waters, Saccorhiza polyschides, Ulva sp., Laminaria digitata, Fucus serratus and Saccharina latissima, were co-digested individually with bovine slurry. Batch reactors of 120 ml and 1000 ml were set up and incubated at 35°C to investigate their suitability for production of biogas. Digesters fed with S. latissima produced the maximum methane yield (335 ml g volatile solids−1 (gVS−1)) followed by S. polyschides with 255 ml gVS−1. L. digitata produced 246 ml gVS−1 and the lowest yields were from the green seaweed Ulva sp. 191 ml gVS−1. The methane and CO2 percentages ranged between 50–72% and 10–45%, respectively. The results demonstrated that the seaweed species investigated are good feedstocks candidates for the production of biogas and methane as a source of energy. Their use on a large-scale process will require further investigation to increase yields and reduce production costs.

Description: Extracellular phytase production by Bacillus subtilis isolated from the gut of a minor carp, Labeo bata, has been investigated under solid-state fermentation using leaves from four low cost aquatic weeds (Ipomea aquatica, Pistia stratiotes, Lemna major, and Eichhornia crassipes) as substrates. Water spinach, I. aquatica, leaf meal supported maximum phytase activity (15.31 ± 0.38 U/g) and phytate degradation (66.79%). Incubation for 8 days at pH 7 and 35°C temperature revealed optimum phytase production. Maximum phytase production complied with 3.0-mL inoculum size (12.38 ± 0.05 U/g) and 60% initial moisture content (13.46 ± 0.08 U/g). Glucose (10 g/L) and ammonium sulfate (20.0 g/L) supplementation as additional carbon and nitrogen sources yielded maximum phytase production (12.24 ± 0.09 and 17.35 ± 0.06 U/g, respectively). Analysis of fermented leaf meal revealed that there was marginal increase (t-value significant at p 〈 0.05) in the contents of crude protein, lipid, minerals (Na, K, Ca, Mg, Zn, Fe, Cu, P), free amino acids, and fatty acids; along with reduction in the contents of the antinutritional factors—e.g., crude fiber, tannins, phytic acid, and trypsin inhibitor. The results indicate that there is ample scope for further research to appraise potential application of gut bacteria for sustainable utilization of aquatic weeds as aquafeed ingredients.

Description: Despite coelacanths, Latimeria chalumnae, being listed as either endangered by CITES or critically endangered by the IUCN, their population size within South Africa is unknown and still needs to be estimated. Their conservation status unfortunately excludes the use of conventional tagging to mark individual animals for a possible mark–recapture experiment. This study shows that because coelacanths have a unique spot patterning it is possible to quickly and accurately identify specific individuals photographically using computer-aided identification software. Without any manual intervention by an operator, the software accurately identified between 56 and 92% of the individuals. Indentification success increased to 100% if the operator could also manually select from other potential matching photographs. It was also shown that fish exhibiting a yaw angle not exceeding 60° could be accurately identified in photographs, although the percentage of fish correctly identified without operator-intervention decreased rapidly with increasing yaw angle. Computer-aided identification should therefore facilitate future coelacanth research as it is both efficient and accurate while also reducing potential stress on the animals observed.

Description: In this paper, we empirically investigate the robustness of random forests for regression problems. We also investigate the performance of six variations of the original random forest method, all aimed at improving robustness. These variations are based on three main ideas: (1) robustify the aggregation method, (2) robustify the splitting criterion and (3) taking a robust transformation of the response. More precisely, with the first idea, we use the median (or weighted median), instead of the mean, to combine the predictions from the individual trees. With the second idea, we use least-absolute deviations from the median, instead of least-squares, as splitting criterion. With the third idea, we build the trees using the ranks of the response instead of the original values. The competing methods are compared via a simulation study with artificial data using two different types of contaminations and also with 13 real data sets. Our results show that all three ideas improve the robustness of the original random forest algorithm. However, a robust aggregation of the individual trees is generally more profitable than a robust splitting criterion.

Description: Species distribution models (SDMs) are an important tool in biogeography and ecology and are widely used for both fundamental and applied research purposes. SDMs require spatially explicit information about species occurrence and environmental covariates to produce a set of rules that identify and scale the environmental space where the species was observed and that can further be used to predict the suitability of a site for the species. More spatially accurate data are increasingly available, and the number of publications on the influence of spatial inaccuracies on the performance of modelling procedures is growing exponentially. Three main sources of uncertainty are associated with the three elements of a predictive function: the dependent variable, the explanatory variables and the algorithm or function used to relate these two variables. In this study, we review how spatial uncertainties influence model accuracy and we propose some methodological issues in the application of SDMs with regard to the modelling of fundamental and realized niches of species. We distinguish two cases suitable for different types of spatial data accuracy. For modelling the realized distribution of a species, particularly for management and conservation purposes, we suggest using only accurate species occurrence data and large sample sizes. Appropriate data filtering and examination of the spatial autocorrelation in predictors should be a routine procedure to minimize the possible influence of positional uncertainty in species occurrence data. However, if the data are sparse, models of the potential distribution of species can be created using a relatively small sample size, and this can provide a generalized indication of the main regional drivers of the distribution patterns. By this means, field surveys can be targeted to discover unknown populations and species in poorly surveyed regions in order to improve the robustness of the data for later modelling of the realized distributions. Based on this review, we conclude that (1) with data that are currently available, studies performed at a resolution of 1–100 km2 are useful for hypothesizing about the environmental conditions that limit the distribution of a species and (2) incorporating coarse resolution species occurrence data in a model, despite an increase in sample size, lowers model performance.

Description: Cereopsis studeri was described by G. von Koch in 1891 with material from Naples. However, it was subsequently synonymized, erroneously identified, and overlooked in subsequent soft coral literature of the twentieth century. After the original description, this species was not recorded or correctly described for 120 years. The study of newly collected material from the North Western Mediterranean permits the re-description of this forgotten species and its assignation to the genus Nidalia in the family Nidaliidae. The main features of Nidalia studeri com. nov. are: colony torch-like, a capitulum light orange in colour, not laterally flattened, dome-shaped and not distinctly projecting beyond the stalk, introvert with sclerites transversally placed in two longitudinal rows per interseptal space, anthocodial crown with 28–38 sclerite rows, points separated from polyps distally, formed by 6–9 pairs of sclerites, and the presence of intermediate points (secondary points) between principal (interseptal) ones. Nidalia studeri is here compared with its closest congeners, especially with the Indonesian species N. simpsoni, species from the West Indian Region N. dissidens, N.occidentalis, N. deichmannae, and the recently described Nidalia aurantia from the Mid-Atlantic Ocean. This is the first time that the genus Nidalia and the family Nidaliidae have been reported with certainty for the Mediterranean Sea.

Description: Three new compounds, 4′-(4,5-dimethyl-1,3-dioxolan-2-yl)methyl-phenol (1), (3′-hydroxybutan-2′-yl)5-oxopyrrolidine-2-carboxylate (2), and atroviridetide (3), have been isolated from the marine-derived fungus Trichoderma atroviride G 20-12. Their structures were determined on the basis of chemical and spectroscopic methods.

Description: It is well known that random forests reduce the variance of the regression predictors compared to a single tree, while leaving the bias unchanged. In many situations, the dominating component in the risk turns out to be the squared bias, which leads to the necessity of bias correction. In this paper, random forests are used to estimate the regression function. Five different methods for estimating bias are proposed and discussed. Simulated and real data are used to study the performance of these methods. Our proposed methods are significantly effective in reducing bias in regression context.

Description: A histological study of the reproductive cycle of male and female shore crabs, Carcinus maenas (Linnaeus), was performed monthly on the South West coast of Ireland (from December 2006 to July 2008). The calculated sex ratio deviated from equality, 1:0.53, revealing a strong male bias. A system was devised, based on screening of tissue sections, to describe and stage gametogenic development. Histological examinations revealed that ovarian development occurred biannually, with a primary winter cycle in which the larger crabs reproduced and a secondary summer cycle, when smaller crabs reproduced. An association was observed where more of the larger specimens were caught in the summer months and the smaller specimens in the winter months, which inversely correlated with the segregated breeding cycles. There was strong evidence that mature male crabs could potentially copulate year round since all mature specimens, collected throughout the year, contained viable spermatozoa. Developmental stages of oogenesis and spermatogenesis were described to develop a practical gonadal index for this portunid crab, providing information on the biology of this species, which will be of benefit for fisheries management.

Description: There has been debate in the literature about whether jellyfish abundance has increased in the northern Benguela upwelling system, or not, over the past five decades and what impact they are having on pelagic fish. Here we review old expedition literature as well as more recent spatial and temporal patterns in distribution of jellyfish off Namibia at a number of different scales, using both published and previously unpublished data. Specifically, we have used data from fishery-dependent sources of both the demersal (359 638 trawls) and pelagic fisheries (11 324 purse-seine sets) that cover the period 1992–2006, supported by data from fishery-independent demersal (6 109 trawls) and pelagic trawls (1 817 trawls) from 1996 to 2006. Using frequency of capture as an index of abundance, it is clear that jellyfish are not randomly distributed within the northern Benguela ecosystem, but show specific areas of concentration that broadly reflect regional oceanography and the distribution of other zooplankton. Although jellyfish are present throughout the year, peaks in abundance are shown that often coincide with peaks in the spawning activity of fish of commercial importance. Interannual changes in jellyfish abundance observed from all sources do not agree, with some showing increases, others declines, and still others showing no change, which suggests caution should be exercised in their interpretation. Based on the multiple lines of evidence synthesised here, we conclude that jellyfish abundance has increased concomitant with a decline of pelagic fish stocks. We conclude that future recovery of the pelagic fishery off Namibia is likely to be considerably challenged because of significant overlaps in space and time between fish and jellyfish, and through the effects of competition and predation effects of jellyfish on fish.

Description: In this paper, drained behaviour of cemented sand under high pressure is studied. A recently developed high pressure triaxial apparatus is used. The test results indicate the significance of degree of cementation and confining pressure on the isotropic compression, volumetric change, stress-strain behaviour and stress-dilatancy relationship of cemented sand at high confining pressures. The results suggest that the influence of cementation is greater at low confining stresses and it reduces with increasing confining stress where the effect of the confining pressure becomes dominant. A Scanning Electron Microscope analysis has also been included in the paper. It revealed that the particle and cement bonding breakage at high pressure is dependent on the stress level and the cement content. The higher the confining pressure the more significant particle and cement bonding breakage is observed. The higher the cement content the fewer sand particles and cement bonds are broken.

Description: We report on a novel sponge disease, hereafter termed 'sponge white patch' (SWP), affecting the Caribbean sponge species Amphimedon compressa. SWP is characterized by distinctive white patches of variable size that are found irregularly on the branches of diseased sponges. Nearly 20% of the population of A. compressa at Dry Rocks Reef, Florida, USA, showed symptoms of SWP at the time of investigation (November 2007-July 2010). Approximately 21% of the biomass of SWP individuals was bleached, as determined by volume displacement. Scanning electron microscopy analysis showed severe degradation of bleached tissues. Transmission electron microscopy of the same tissues revealed the presence of a spongin-boring bacterial morphotype that had previously been implicated in sponge disease (Webster et al. 2002; Mar Ecol Prog Ser 232:305-309). This particular morphotype was identified in 8 of 9 diseased A. compressa individuals investigated in this study. A close relative of the aforementioned disease-causing alphaproteobacterium was also isolated from bleached tissues of A. compressa. However, whether the spongin-boring bacteria are true pathogens or merely opportunistic colonizers remains to be investigated. Molecular fingerprinting by denaturing gradient gel electrophoresis (DGGE) demonstrated a distinct shift from the microbiota of healthy A. compressa to a heterogeneous mixture of environmental bacteria, including several phylotypes previously implicated in sponge stress or coral disease. Nevertheless, tissue transplantation experiments conducted in the field failed to demonstrate infectivity from diseased to healthy sponges, leaving the cause of SWP in A. compressa to be identified.

Description: It was demonstrated previously that polar and non-polar surface extracts of the brown alga Fucus vesiculosus collected during winter from the Kiel Bight (Germany) inhibited bacterial attachment at natural concentrations. The present study describes the bioassay-guided identification of the active metabolites from the polar fraction. Chromatographic separation on a size-exclusion liquid chromatography column and bioassays identified an active fraction that was further investigated using nuclear magnetic resonance spectroscopy and mass spectrometry. This fraction contained the metabolites dimethylsulphopropionate (DMSP), proline and alanine. DMSP and proline caused the anti-attachment activity. The metabolites were further quantified on the algal surface together with its associated boundary layer. DMSP and proline were detected in the range 0.12–1.08 ng cm−2 and 0.09–0.59 ng cm−2, respectively. These metabolites were tested in the concentration range from 0.1 to 1000 ng cm−2 against the attachment of five bacterial strains isolated from algae and sediment co-occurring with F. vesiculosus. The surface concentrations for 50% inhibition of attachment of these strains were always 〈0.38 ng cm−2 for DMSP and in four cases 〈0.1 ng cm−2 for proline, while one strain required 1.66 ng cm−2 of proline for 50% inhibition. Two further bacterial strains that had been directly isolated from F. vesiculosus were also tested, but proved to be the least sensitive. This study shows that DMSP and proline have an ecologically relevant role as surface inhibitors against bacterial attachment on F. vesiculosus.

Description: Microchemical otolith analyses have been shown to provide valuable information on the life history, dispersal and stock characteristics of teleost fish. In the present study, the suitability of this technique for identifying the origin and distribution of Atlantic cod Gadus morhua L. from the Baltic Sea was examined using laser ablation-ICPMS. The capacity to distinguish individuals from different Baltic Sea stocks and from the adjacent North Sea stock based on incoporation of stock-specific elemental fingerprints along otolith growth axes was investigated. It was further tested if different origins led to spawning-site specific element concentrations in otolith cores. The results indicate that microchemical analyses of Baltic cod otoliths are applicable for differentiating individuals of different stocks. Analyses of similarities including 12 element/calcium ratios resulted in significant differences between individuals from the eastern and the western Baltic Sea and between North Sea and Baltic Sea samples. Sr/Ca, Ba/Ca, Y/Ca, Mg/Ca, Zr/Ca and Mn/Ca ratios had the strongest discriminatory power. A further separation of individuals caught in 3 different spawning grounds of the eastern Baltic, however, was not possible. Elemental compositions from the core regions of otoliths from young of the year cod caught in eastern and western Baltic Sea spawning grounds showed significant differences in Sr/Ca, Ba/Ca and Mg/Ca concentrations. Analyses of similarities again showed significant differences between these areas for juveniles. This study demonstrates the potential of otolith microchemical analyses to provide important information about the stock structure and connectivity of G. morhua in the Baltic Sea.

Description: The present study investigated the effect of temperature on male and female swimming activity of the calanoid copepod Temora longicornis, sampled during winter (February) and summer (August) in the English Channel coastal ecosystem. Video recordings were conducted at 3 temperatures representative of those to which these organisms are normally exposed (13, 16 and 20 degrees C) and one extreme-event temperature (24 degrees C). Examinations of instantaneous velocity and symbolic analysis (i.e. dynamics of swimming states discretized from time series of instantaneous velocity) showed that T. longicornis changed its behaviour when confronted with environmental temperature variations. Swimming speed increased as temperature increased. In warmer water, this copepod displayed higher swimming activity, break periods were less frequent, and the frequency of jumps increased. This phenomenon was amplified when the environmental temperature was increased to 24 degrees C. These observations revealed a considerable tolerance to high temperatures and an ability to adjust to environmental temperature changes. The 'summer population' was less active in the low temperature range, but the swimming speed reached a higher value at higher temperatures than that shown by the 'winter population'. The results of the present study highlighted changes in the individual behaviour of this copepod in response to changing seasonal conditions in the form of swimming activity, and thus its ability to maintain biological processes throughout the year, even in a restrictive environment.

Description: Altered lavas have been dredged from three locations on the Resolution Ridge, west of New Zealand's South Island. On the basis of whole-rock geochemistry, Sr, Nd and Pb isotope data and Ar–Ar ages, they can be divided into two suites: 62–60 Ma enriched mid-ocean ridge basalt (E-MORB), and 57 Ma trachybasalt and trachyandesite of ocean island basalt (OIB) affinity. The E-MORBs from the Resolution Ridge are only the second place from which Tasman Sea abyssal oceanic crust has ever been sampled, they have Indian MORB-like isotope compositions, and their ages support a recent interpretation of a 100 km sinistral offset of the southern part of the Tasman Sea spreading ridge. The slightly younger OIB suite erupted shortly after oceanic crust formation and has FOZO to HIMU source characteristics similar to the well-known SW Pacific Diffuse Alkaline Magmatic Province (DAMP). The close occurrence and isotopic mixing relationships of both Paleocene volcanic suites on the Resolution Ridge may be explained by a heterogeneous upper mantle in which the more fertile OIB component was extracted during a later melting event away from the spreading ridge. The dredged lavas predate formation of Southeast Tasman oceanic crust that borders the Resolution Ridge to the south.

Description: The conspicuous retreat of the key species Fucus vesiculosus from the deeper parts of its former distribution area in the Baltic Sea has triggered extensive research on the factors that control its growth. Based on recently obtained knowledge on a large number of potential drivers, we developed a numerical model incorporating effects of abiotic factors on the physiological functions of photosynthesis, respiration, and reproduction and the ecological processes of competition, grazing, and epibiosis. For all input combinations, the model delivers the monthly net growth rate near the bladder wrack’s depth limit and the maximum depth of its vertical distribution. The use of data corresponding to conditions presently observed in the western Baltic Sea sets the year’s maximum algal net growth rate in late spring and 2 minima in early spring and autumn. The depth limit of the wrack’s distribution is set at ~9 m. Light and its absorption by phytoplankton represent by far the most important factors controlling the modeled net growth rate and depth penetration, with the role of epibiosis requiring further investigation. Lacking findings on population dynamics and biotic interactions restrict the generated model to an exploratory rather than a predictive tool.

Description: The impact of seawater acidification on calcifying organisms varies at the species level. If the impact differs between predator and prey in strength and/or sign, trophic interactions may be altered. In the present study, we investigated the impact of 3 different seawater pCO2 levels (650, 1250 and 3500 µatm) on the acid–base status or the growth of 2 predatory species, the common sea star Asterias rubens and the shore crab Carcinus maenas, and tested whether the quantity or size of prey consumed is affected. We exposed both the predators and their prey, the blue mussel Mytilus edulis, over a time span of 10 wk and subsequently performed feeding experiments. Intermediate acidification levels had no significant effect on growth or consumption in either predator species. The highest acidification level reduced feeding and growth rates in sea stars by 56%, while in crabs a 41% decrease in consumption rates of mussels could be demonstrated over the 10 wk experimental period but not in the subsequent shorter feeding assays. Because only a few crabs moulted in the experiment, acidification effects on crab growth could not be investigated. Active extracellular pH compensation by means of bicarbonate accumulation was observed in C. maenas, whereas the coelomic fluid pH in A. rubens remained uncompensated. Acidification did not provoke a measurable shift in prey size preferred by either predator. Mussels exposed to elevated pCO2 were preferred by previously untreated A. rubens but not by C. maenas. The observed effects on species interactions were weak even at the high acidification levels expected in the future in marginal marine habitats such as the Baltic Sea. Our results indicate that when stress effects are similar (and weak) on interacting species, biotic interactions may remain unaffected.

Description: Pseudomonas strains were shown to be regularly associated with the brown macroalga Saccharina latissima from the Baltic Sea, studied over several years, and were identified as producers of the antimicrobially active compound 2,4-diacetylphloroglucinol. These findings support the assumption of a stable association between the Pseudomonas spp. strains and S. latissima in the Baltic Sea. The metabolite profile of the Pseudomonas spp. comprised monoacetylphloroglucinol, 2,4-diacetylphloroglucinol, pyoluteorin and several rhizoxins, which exhibited broad-spectrum antibiotic activities against Gram-positive and Gram-negative bacteria as well as against fungi. Because the antibiotic activities included the inhibition of the 2 algal pathogens Pseudoalteromonas elyakovii and Algicola bacteriolytica, we propose a beneficial effect of these marine pseudomonads on their host S. latissima.

Description: Phytoplankton experience strong and abrupt variations in light intensity. How cells cope with these changes influences their competitiveness in a highly dynamical environment. While a considerable amount of work has focused on photoacclimation, it is still unknown whether processes specific of phytoplankton groups (e.g. calcification and silicification) influence their response to changing light. Here we show that the diatom Phaeodactylum tricornutum and the coccolithophore Emiliania huxleyi respond to an abrupt increase in irradiance by increasing carbon fixation rates, decreasing light absorption through the decrease of light-harvesting pigments and increasing energy dissipation through the xanthophyll cycle. In addition, E. huxleyi rapidly increases calcium carbonate precipitation in response to elevated light intensity, thereby providing an additional sink for excess energy. Differences between the 2 species also emerge with regard to the magnitude and timing of their individual responses. While E. huxleyi show a pronounced decrease in chlorophyll a and fucoxanthin cellular contents following increased light intensity, P. tricornutum has a faster increase in diadinoxanthin quota, a slower decrease in Fv/Fm (ratio of variable to maximum fluorescence) and a stronger increase in organic carbon fixation rate during the first 10 min. Our findings provide further evidence of species-specific responses to abrupt changes in light intensity, which may partly depend on the phytoplankton functional groups, with coccolithophores having a supplementary path (calcification) for the rapid dissipation of excess energy produced after an abrupt increase in light intensity. These differences might influence competition between coexisting species and may therefore have consequences at the community level.

Description: Radiation measurements in the area off Northwest Africa (research cruise, February 2008) and at Mindelo (Cape Verde Islands, May 2009) were used to investigate the impacts of Saharan dust and clouds on solar irradiance and on photosynthetically available radiation, to derive a relationship between dust aerosol optical depth (AOD) and photosynthetically available radiation and to determine the annual variations of photosynthetically available radiation. Three different kinds of atmospheric conditions were considered: cloudy skies, which decreased or increased the irradiance and dusty skies. The reduction by clouds was up to 67.2% at 400 nm and up to 84.4% at 700 nm. Enhancements of up to 21.9% at 400 nm and 34.0% at 700 nm were observed. The decrease by dust was up to 19.7% at 400 nm and up to 4.1% at 700 nm. Clouds decreased or increased the photosynthetically available radiation by up to 79.9% or up to 31.2%. The reduction by dust depended on the dust AOD and was between 3.6% and 12.3%. A linear relationship confirmed a decrease of photosynthetically available radiation of 1.2% by an increase of dust AOD of 0.1.

Description: Rising atmospheric CO2 concentrations will have profound effects on atmospheric and hydrographic processes, which will ultimately modify the supply and chemistry of trace metals in the ocean. In addition to an increase in sea surface temperatures, higher CO2 also results in a decrease of seawater pH, known as ocean acidification, with implications for inorganic trace metal chemistry. Furthermore, direct or indirect effects of ocean acidification and ocean warming on marine biota will also affect trace metal biogeochemistry via alteration of biological trace metal uptake rates and metal binding to organic ligands. Currently, we still lack a holistic understanding of the impacts of decreasing seawater pH and rinsing temperatures on different trace metals and marine biota, which complicates projections into the future. Here, we outline how ocean acidification and ocean warming will influence the inputs and cycling of Fe and other biologically relevant trace metals globally, and regionally in high and low latitudes of the future ocean, discuss uncertainties, and highlight essential future research fields.

Description: Bacteria associated with 2 macroalgae growing in the Kiel Fjord (Baltic Sea) were investigated seasonally over two years by scanning electron microscopy and cultivation methods. Seasonal variations and significant differences between both macroalgal species with respect to the associated bacteria were observed. 166 bacterial strains were isolated from the macroalgae and classified by phylogenetic analysis of 16S rRNA gene sequences. The strains formed 82 phylotypes according to sequence similarities of499.0%. Samples from Fucus vesiculosus revealed 43 and from Delesseria sanguinea 57 bacterial phylotypes. They affiliated to Actinobacteria, Alphaproteobacteria, Bacilli, Betaproteobacteria, Flavobacteria, Gammaproteobacteria, and Sphingobacteria. Following the assumption that chemical interactions rule the bacteria-macroalga associations, we tested the biological activity of both macroalgae and isolated bacterial strains against a panel comprising standard and ecologically relevant microorganisms (Gram-positive and Gram-negative bacteria, including macroalgal pathogens and surface associated strains, and a yeast). Both macroalgae presented inhibitory activity against at least one microorganism, but overall the inhibitory activities were low. In contrast, all extracts stimulated growth of many of the tested bacteria. While growth stimulation was common concerning bacteria associated with macroalgae, no stimulation was shown for the standard set of bacteria (with exception of one case of stimulation of the plant pathogen Erwinia amylovora). Regarding the potential biological activity of microorganisms associated with macroalgae, more than 60% of the bacterial phylotypes inhibited the growth of at least one microorganism. A higher proportion of strains showed antimicrobial activity against the set of bacteria associated with macroalgae as compared to standard set of microorganisms. Certain phylotypes are consistently found as epiphytes, suggesting their specific association with macroalgae. The presented positive and negative effects of macroalgal extracts on growth of macroalga-associated bacteria, significant bacterial activity against macroalgal pathogens and competitors, and potential degradative capabilities support the assumption that complex chemical interactions shape the bacteria-macroalga relationships.

Description: Three bioassay experiments were performed to study the effects of nutrient and Saharan dust additions on natural diazotrophic communities in the tropical North Atlantic Ocean. Samples for nucleic acid analysis were collected at the beginning and end of 48 h incubations. TaqMan probes specific to 7 diazotrophic phylotypes, viz. filamentous cyanobacteria (Trichodesmium spp.), unicellular cyanobacterial (UCYN) Groups A, B, and C, Gamma A and P Proteobacteria, and Cluster III, were used to quantify nifH DNA abundances. N-2 fixation rates were measured in the same experiments using the N-15(2) gas bubble injection method. N-2 fixation was co-limited by P and Fe. Total nifH abundances increased relative to the control with additions of either Fe or P or both in combination. Additions of dissolved N, alone or in combination with phosphate, induced increases in UCYN-A and Gamma A nifH compared with the control. Saharan dust additions significantly stimulated fixation rates. Abundances of all cyanobacterial and Gamma A nifH phylotypes at least doubled after Saharan dust additions where surface water dissolved Fe concentrations were 〈2 nmol l(-1). Laboratory experiments with cultures of T. erythraeum demonstrated that dust addition promoted colony formation and the persistence of T. erythraeum biomass relative to cultures to which no Fe was added. Our results with both field and laboratory experiments indicate that Saharan dust positively affects diazotrophic phylotype abundances and changes T. erythraeum colony morphology.

Description: Through the use of mesocosm experiments, we show that an unusually early spring phytoplankton bloom can be induced by intermittent high-light periods. We performed mesocosm experiments where plankton assemblages from Kiel Bight (Western Baltic Sea) received a light regime based on the natural seasonal irradiance dimmed to 43% of surface irradiance of cloudless days, starting with irradiance levels of mid-January (6 mesocosms) and mid-February (6 mesocosms). After 6 d, half of the mesocosms received a ca. 2-fold increase in irradiance. In the January mesocosms, a phytoplankton bloom developed only in the treatments with the high-light episode, whereas in the February mesocosms a phytoplankton bloom also developed in the controls. Phytoplankton net growth rates, production:biomass ratios and biomass at the end of the high irradiance episodes were positively correlated to the daily light dose. The relative biomass of diatoms increased with increasing light, whereas the relative biomass of cryptophytes decreased. A bottom-up transmission to mesozooplankton (mainly copepods of the genera Acartia and Oithona) was evident by increased densities of copepod nauplii and egg production under higher light conditions, whereas copepodids and adults showed no responses during the experimental period. The taxonomic composition of the nauplii was shifted to the advantage of Acartia/Centropages (not distinguished at the naupliar stage) under higher light conditions.

Description: In an effort to identify the key mechanisms controlling biological productivity and food web structure in the Chesapeake Bay estuarine turbidity maxima (ETM), we measured plankton community metabolism on a series of surveys in the upper Chesapeake Bay during the winter and spring of 2007 and 2008. Measured quantities included primary production, bacterial production, planktonic community respiration, and algal pigment concentrations. These measurements revealed a classic minimum in photosynthesis in the vicinity of the ETM. Temporal variability in plankton community metabolism, primary production, respiration, and bacterial production, were highest in the southern oligohaline region down-estuary of the ETM, and appeared to be driven by dynamic bio-physical interactions. Elevated primary production and community respiration in this region were often associated with the presence of mixotrophic dinoflagellates. The dinoflagellate contribution to primary production and respiration appeared to be particularly large as a result of their mixotrophic capabilities, which allow them to obtain energy both autotrophically and heterotrophically. This study suggests that mixotrophic dinoflagellates play a key role in pelagic food web in the oligohaline region of Chesapeake Bay supplying most of the labile organic matter during late winter and spring and also providing a vector for transferring microbial production to mesozooplankton.

Description: A model, composed of coupled particle tracking and benthic response modules, for predicting waste solids flux and benthic impacts of gilthead sea bream (Sparus aurata L.) and sea bass (Dicentrarchus labrax L.) aquaculture, was tested at six sites with different hydrodynamics, bathymetries and biomasses in the Aegean and Ionian Seas, Eastern Mediterranean with observations of sediment trap flux and benthic impact indicators. Seven sediment trap validation studies were conducted that varied in design with traps deployed either on the sea bed, attached to nets or in the water column. Model predictions of flux to traps spaced 5 m apart up to 50 m from the cages over a 13 d period were statistically significant (r2 = 0.61, n = 57, p ≤ 0.05). However, the model could not predict adequately the flux to traps spaced 2 m apart in the high-flux zone underneath cages where variability between trap observations was high. In this high-flux zone underneath cages, the averaged model flux predictions resulted in a performance of ± 49%. Statistically significant relationships were established at four sites; between modelled flux and either benthic fauna impact indicator species (S), abundance (A), A/S ratio, Shannon Wiener Index or Biomass Fractionation Index (BFI), (r2 = 0.82, 0.60, 0.57, 0.67 and 0.48, respectively; n = 24, p ≤ 0.05). Two other sites, which did not exhibit an abundance peak in enriched zones, did not fit these relationships. Using relative abundance of taxonomic groups, a modelled flux of 4.1 g m-2 d-1 was a useful boundary; on either side of this boundary, clear trends occurred in pollutant tolerant and intolerant species.

Description: Global ocean precipitation is an important part of the water cycle in the climate system. A number of efforts have been undertaken to acquire reliable estimates of precipitation over the oceans based on remote sensing and reanalysis modelling. However, validation of these data is still a challenging task, mainly due to a lack of suitable in situ measurements of precipitation over the oceans. In this study, validation of the satellite-based Hamburg Ocean Atmosphere Parameters and fluxes from Satellite data (HOAPS) climatology was conducted with in situ measurements by ship rain gauges over the Baltic Sea from 1995 to 1997. The ship rain gauge data are point-to-area collocated against the HOAPS data. By choosing suitable collocation parameters, a detection rate of up to about 70% is achieved. Investigation of the influence of the synoptic situation on the detectability shows that HOAPS performs better for stratiform than for convective precipitation. The number of collocated data is not sufficient to validate precipitation rates. Thus, precipitation rates were analysed by applying an interpolation scheme based on the Kriging method to both data sets. It was found that HOAPS underestimates precipitation by about 10%, taking into account that precipitation rates below 0.3 mm h−1 cannot be detected from satellite information.

Description: Investigations of the surface chemistry of marine organisms are essential to understand their chemically mediated interactions with fouling organisms. In this context, the concentration of natural products in the immediate vicinity of algal surfaccs, as well as their biological activity, are of particular importance. Howevcr, due to lack of appropriate methods, the distribution of Compounds within the Chemical sphere around marine algae is unknown. This study demonstrates the suitability of confocal resonance Raman microspcctroscopy for the determination of metabolites around algal surfaces with a micrometer resolution.

Description: Both ocean warming and acidification have been demonstrated to affect the growth, performance and reproductive success of calcifying invertebrates. However, relatively little is known regarding how such environmental change may affect interspecific interactions. We separately treated green crabs Carcinus maenas and periwinkles Littorina littorea under conditions that mimicked either ambient conditions (control) or warming and acidification, both separately and in combination, for 5 mo. After 5 mo, the predators, prey and predator-prey interactions were screened for changes in response to environmental change. Acidification negatively affected the closer-muscle length of the crusher chela and correspondingly the claw-strength increment in C. maenas. The effects of warming and/or acidification on L. littorea were less consistent but indicated weaker shells in response to acidification. On the community level, however, we found no evidence that predator-prey interactions will change in the future. Further experiments exploring the impacts of warming and acidification on key ecological interactions are needed instead of basing predictions of ecosystem change solely on species-specific responses to environmental change.

Description: A semi-empirical approach was used to quantify the modification of the underwater light field in amplitude (magnitude effect) and spectral distribution (spectral effect) by different atmospheric conditions altering the incident light. The approach based on an optical model in connection with radiation measurements in the area off Northwest Africa. Key inputs of the model were parameterized magnitude and spectral effects. Various atmospheric conditions were considered: clear sky, dusty sky without clouds, cloudy sky without dust and skies with different ratios of dust and clouds. Their impacts were investigated concerning the modification of the downward irradiance and photosynthetically available radiation in the water column. The impact on downward irradiance depended on the wavelength, the water depth, the optical water properties, the dust and cloud properties, and the ratio of clouds to dust. The influence of clouds on the amplitude can be much higher than that of dust. Saharan dust reduced the photosynthetically available radiation in the water column. Ocean regions were more influenced than coastal areas. Compensations of the magnitude and spectral effects were observed at special water depths in ocean regions and at atmospheric conditions with definite cloud to dust ratios

Description: Stress often induces metabolically expensive countermeasures. Bivalve shell production is costly and can thus be indirectly impacted by environmental stress. Suboptimal salinity and temperature may constitute stressors that allocate energy away from shell production to cellular processes such as osmoregulation or to the repair of cellular damage. In the course of climate change, water temperatures of the Baltic Sea are predicted to increase, and salinity is predicted to regionally decrease. These shifts may lead to increased stress for temperate marine species adapted to relatively cool water temperatures and high salinity conditions. To better understand the importance of climate change-related stress, we assessed the isolated and interactive effects of salinity and temperature on shell increment (cumulative growth: shell), cellular oxidative stress (accumulation of oxidized lipids and proteins: lipofuscin), instantaneous physiological condition (condition index: CI), and mortality of young Mytilus edulis and Arctica islandica from the western Baltic Sea. Temperature and salinity interactively affected shell increment, lipofuscin accumulation, and mortality of M. edulis as well as shell increment of A. islandica. Shell increment of M. edulis was less affected by hyposalinity than shell increment of A. islandica. In both species the CI decreased and lipofuscin accumulation increased with increasing temperature. Lipofuscin accumulation negatively correlated with shell increment in M. edulis. We conclude that Baltic Sea populations of ecologically relevant bivalve species may experience severe stress by the predicted regional scenario of warming and desalination if evolutionary adaptation does not happen at a similar rate.

Description: The scintillation index of plane and spherical light waves as well as of a Gaussian beam, propagating in the clear-water weakly turbulent ocean, is revealed. The results are of utmost importance for underwater optical communications and sensing. An analysis of the threshold between the weak and strong regimes of oceanic turbulence is made, with the accent on the contribution from salinity-induced turbulence. It is found that strong oceanic turbulence can occur at distances as short as several meters, in striking contrast with atmospheric studies for which the typical distances are on the order of a kilometer.

Description: This paper introduces new data on Todaropsis eblanae morphology, morphometry and functional aspects of the male reproductive system and hectocotylus. Spermatophores differ in specimens from the Atlantic Ocean (average length, 18.28 ± 1.45 mm, 15.63 ± 0.8% of mantle length; weight, 2.0–12.0 mg) and the Indian Ocean (average length, 24.8 ± 2.85 mm, 16.9 ± 2.1% of mantle length; weight, 35.0–39.6 mg) (t = 3.14; p 〈 0.01 for absolute sizes and t = 0.711; p 〉 001 for relative sizes). An additional important distinctive trait is the form of connection of the cement body with the ejaculatory tube. In recent years, T. eblanae has been regularly caught in the Barents Sea, meaning its range has extended to subarctic waters. The morphology and morphometry of the spermatophoric complex of organs did not vary in investigated parts of its range. Hectocotylus patterns and some important spermatophore traits distinguish Todaropsis from other Ommastrephidae.

Description: Mesopelagic fishes occur in all the world’s oceans, but their abundance and consequently their ecological significance remains uncertain. The current global estimate based on net sampling prior to 1980 suggests a global abundance of one gigatonne (109 t) wet weight. Here we report novel evidence of efficient avoidance of such sampling by the most common myctophid fish in the Northern Atlantic, i.e. Benthosema glaciale. We reason that similar avoidance of nets may explain consistently higher acoustic abundance estimates of mesopelagic fish from different parts of the world’s oceans. It appears that mesopelagic fish abundance may be underestimated by one order of magnitude, suggesting that the role of mesopelagic fish in the oceans might need to be revised.

Description: Seagrasses worldwide are commonly infected by endophytic protists of the genus Labyrinthula. To date, the nature of interaction of endophyte and host is not well understood. In eelgrass (Zostera marina) Labyrinthula zosterae may become virulent (pathogenic) and lead to the loss of entire sea grass beds. One of the best known examples of any marine epidemic were outbreaks of the ´wasting disease´ on both sides of the Atlantic in the 1930s, but smaller infestations have been reported until recently. Up to now, detection of infection by Labyrinthula was based on the wasting index, i.e. the relative area of leaf lesions or microscopy, while genetic data are virtually absent. We characterized a ~1400 base pair portion of the 18S small subunit rDNA in L. zosterae isolates (N=41) from six northern European sites and one southern location (Adriatic Sea) in order to assess identity and potential diversity of endophytic protists. Because there are indications that low salinity impedes Labyrinthula growth, sampling sites included a wide range of salinities from 5-34 psu. A search against the non-redundant GENBANK data base revealed that most isolates are 99% similar to the only L. zosterae 18S sequence available from the data base at all but the Finish site (salinity values 5-7 psu). At the latter site, a different Labyrinthula species occurred, which was also found in fully marine Wadden Sea cultures. A third species was detected in Skagerrak, south-western Baltic and North Sea samples (20-25 psu). We conclude that L. zosterae is widespread among northern European eelgrass sites across wide ranges of salinity.

Description: We examined the effect of increased copper concentrations (0-10 mu M) on hydrothermal vent microorganisms and the production of copper (Cu)-binding ligands as a response. Hydrothermal vent microbes originated from diffuse fluids at the Lilliput mussel field and the Irina II site in the Logatchev hydrothermal vent field, both on the Mid-Atlantic Ridge. Parallel studies were also conducted with amino acids supplemented to the incubations in order to verify whether dissolved amino acids, present in hydrothermal fluids, can buffer the bioavailable copper and reduce the active production of Cu-binding ligands. In all incubations, ligand concentrations increased with rising copper concentrations, but microbial cell numbers remained constant. This study shows that microbes were able to cope with as much as 10 mu M dissolved copper by buffering the free copper concentration. The presence of amino acids had no significant influence on the active ligand production. Our results imply that mediation of chemical speciation by vent microbes may have an important impact on hydrothermal trace metal fluxes into the ocean.

Description: Growth rates of the cold-water corals (CWC) Madrepora oculata, Lophelia pertusa, Desmophyllum dianthus and Dendrophyllia cornigera were measured over 8 mo under controlled conditions (12°C in the dark, fed 5 times a week) by means of the buoyant weight technique. Additionally, linear growth rates were measured in M. oculata and L. pertusa for 2 and 1 yr, respectively. The weight measurements revealed growth rates, expressed as percent growth per day (mean ± SD), of 0.11 ± 0.04 for M. oculata, 0.02 ± 0.01 for L. pertusa, 0.06 ± 0.03 for D. dianthus and 0.04 ± 0.02 % d–1 for D. cornigera. Growth in M. oculata was significantly higher (p 〈 0.0001) than in the other 3 CWC species. For M. oculata and L. pertusa, also linear growth was recorded. These values (mean ± SD) were 0.014 ± 0.007 and 0.024 ± 0.018 mm d–1 for M. oculata and L. pertusa, respectively. This is the first study that compares the growth rates of 4 different CWC species under the same experimental conditions of water flow, temperature, salinity and food supply. These corals have different growth rates, both in terms of total weight increase and linear increase, and these growth rates can be related to interspecific physiological differences. Data on growth rates are essential to understand the population dynamics of CWC as well as the recovery capacity of these communities after disturbance.

Description: A new compound, jolynamine (1), was isolated from the marine brown alga Jolyna laminarioides collected from the coast of Karachi, Pakistan. In addition, four known compounds, namely saringosterol (2), loliolide (3), methyl-4-hydroxybenzoate (4) and propyl-4-hydroxybenzoate (5), were isolated for the first time from the marine brown alga Iyengaria stellata, and two known compounds, namely 3,4,5-trimethylaniline (6) and harmine (7), were isolated for the first time from the marine brown alga Melanothamnus afaqhusainii. Compound 6 is synthetically known but was isolated for the first time from a natural source. The structures of these compounds were elucidated with the help of powerful spectroscopic techniques. Furthermore, the methanolic extracts of both algae showed anti-microbial activities against various bacteria and fungi.

Description: Introduction: Nanocarriers are considered to be one of the most innovative drug delivery systems, owing to their high potential in drug protection, delivery and targeting to the diseased site. Unfortunately, their applicability is hampered mainly by their uptake, due to macrophagic recognition and lack of specificity, if not properly engineered. Areas covered: Sialic acid (SA) and its derivatives have recently been studied in order to govern their stealthness as carriers and their effectiveness as targeting moieties. In this review, the most outstanding research (in vitro and in vivo) dealing with the use of SA or its derivatives to modify the surface carriers, in order to achieve targeted or stealth nanosystems, is summarized. Moreover, the application of SA or its derivatives as modifiers in cancer targeting and therapy, and in recognition purposes, is considered. Expert opinion: The application of SA-based strategies for nanocarrier engineering represents one of the most stimulating challenges in drug delivery and drug targeting. Both in vivo and in vitro results on stealth or targeted nanocarriers, modified with different kinds of SA or SA derivative, have highlighted the great potential of this approach. These studies have drawn attention to both the advantages (stealth properties, targeting ability, cancer inhibition, viral and inflammation recognition, brain targeting) and the possible disadvantages (i.e., presence of possible multi-target side effect outputs) of this strategy, and overall suggests that further investigations on this strategy are required.

Description: Innate immunity is the front line of self-defense against microbial infection. After searching for natural substances that regulate innate immunity using an ex vivo Drosophila culture system, we identified a novel dimeric chromanone, gonytolide A, as an innate immune promoter from the fungus Gonytrichum sp. along with gonytolides B and C. Gonytolide A also increased TNF-α-stimulated production of IL-8 in human umbilical vein endothelial cells.

Description: The abundance of gold in crustal rocks is an important constraint on the formation of gold deposits. Gold concentrations in unmineralised igneous, sedimentary and metamorphic rocks range from 0.05 to 20 ppb with average concentrations commonly between 0.5 and 5 ppb. Analytical methods with ultra-low detection limits are required to observe the full range of concentrations. Gold concentrations in igneous rocks are strongly controlled by the behaviour of sulphur. Higher gold concentrations occur in sulphur-undersaturated rocks compared to sulphur saturated igneous rocks. Mid ocean ridge basalt has lower gold concentration than ocean-island and volcanic-arc basalt, due mainly to lower oxygen fugacity at MOR settings that causes sulphur saturation. Gold concentrations in sedimentary rocks increase with increasing abundance of diagenetic sulphide minerals and organic matter. Gold concentrations in metamorphic rocks decrease systematically with increasing metamorphic grade. Amphibolite facies rocks commonly contain between 50 and 80% less gold than their unmetamorphosed protolith rocks.

Description: In this article, wave refraction and shoaling in coastal areas were investigated and used to derive the bathymetry. With its high spatial resolution, which can achieve up to 1 m in SpotLight mode, and its low cut-off wavelength, the TerraSAR-X satellite provides images that are particularly suitable for the observation of wave behaviour in transient and shallow waters. By computing the two-dimensional (2D) spectra, shoaling waves were tracked from the open sea to the shoreline. The observed wave refraction and shoaling were compared with wave refraction laws and first-order wave theory (Airy theory). The retrieved bathymetry was compared against depth data from other sources such as ETOPO1, the US Coastal Relief Model and sea charts from the British Admiralty. A further aim of this article was the investigation of breaking waves showing up as near-shore image patterns. A theory is presented of how to derive the height of breaking waves by use of this pattern. Synthetic aperture radar (SAR) images with azimuth as well as range travelling waves were investigated. As test sites, we chose the entrance of Port Phillip near Melbourne (Australia) and the Duck Research Pier in North Carolina (USA).

Description: The temporal and spatial variability of sea-ice radar signatures in the Southern Ocean during late winter, spring and early summer from QuikSCAT data is presented. We observe a circumpolar and broad band of sea-ice close to the marginal ice zone that is characterized by very high radar backscatter. This feature is explained through detailed in situ observations of snow and sea-ice properties as well as in relation to meteorological conditions, which were derived from US National Center for Environmental Prediction (NCEP)/National Center for Atmospheric Research (NCAR) reanalysis data. Our results indicate that high backscatter regions are caused by metamorphous snow, which forms through re-freezing after short-term melt events. This process is connected with the episodic passes of low-pressure systems entraining warmer air from the north. South of the Antarctic Circumpolar Trough, sea-ice is not affected by this influence and shows spatially homogenous microwave signatures with low backscatter.

Description: The focus of this study was the 11.55 m long sediment core 303700-7, which was retrieved from the Gdansk Basin during a cruise of RV ‘Poseidon’ within the frame of the Russian–German Project GISEB. The core was analysed for grain size, elemental chemical composition, organic carbon and palynological spectra. The age control was based on palynostratigraphy and 7 radiocarbon datings of bulk sedimentary organic matter. These data provide a high-resolution record of climatic and marine palaeoenvironments in the Gdansk Basin for the last ca. 13 kyr, from the Bølling to late Holocene time. Sedimentation rates were estimated to vary between 0.37 and 1.62 mm yr–1. Major variations in palaeosalinity were estimated from bromine concentrations in the sediment. This method allows the first quantitative reconstruction of palaeosalinity changes in the Baltic Sea, especially profound during the Littorina and Postlittorina periods (middle to late Holocene). In addition, grain size data indicated several Littorina transgressive–regressive stages and a few episodes of increased near-bottom current activity. Our results from the Gdansk Basin are consistent with palaeoceanographic data from other deep basins of the Baltic Sea and provide new insights into the regional Holocene history.

Description: The mussel Mytilus galloprovincialis is a common aquaculture species, and also a major fouling organism that has negative economic impacts. There are no standard assay conditions for this important species and therefore, this study quantified the effect of key factors on the settlement of pediveligers and plantigrades. Density dependent settlement did not occur for either pediveligers or plantigrades. Settlement increased in drop assays in a 12 h light:12 h dark cycle, while bottom shade had no effect of any magnitude. In addition, settlement was significantly enhanced by storing pediveligers for between 4 and 24 days at 4 °C. Overall, these data provide the template to optimise and standardise static laboratory settlement assays for mussels in order to develop materials that either enhance settlement for the aquaculture industry, or deter settlement for antifouling applications. Furthermore, simple mechanisms such as storage at 4 °C can enhance settlement beyond current methods used in aquaculture hatcheries.

Description: We assessed the effects of light limitation and temperature shift on palatability and induced antiherbivore defense in the brown alga Fucus vesiculosus L. Incubation for 2 wk at light intensities above the compensation point of photosynthesis and in the absence of grazers increased the palatability of F. vesiculosus and its subsequent consumption by the omnivorous isopod Idotea baltica Pallas. This effect correlated with an increased C:N ratio and mannitol content in the algal tissue, presumably due to increased photosynthetic carbon fixation. Mannitol, the primary product of photosynthesis in F. vesiculosus, proved to be a feeding cue for I. baltica, and depletion of the mannitol pool may therefore account for the reduced palatability during light limitation. At light intensities above the compensation point of photosynthesis, F. vesiculosus responded with decreasing palatability when it was exposed to I. baltica grazing. Irrespective of the preceding light regime, such defense induction was prevented during incubation under light limitation. Thus, under low light, defense induction is not only inhibited, but also less necessary due to the relative absence of feeding cues. Upward or downward shifts in water temperature by approximately 10°C also inhibited inducible defense in F. vesiculosus. However, such shifts did not affect algal growth and were therefore the consequence of an impairment of specific defense-related components rather than of resource limitation, unless compensatory growth was given priority over defense.

Description: The synergistic effects of fishing, climate and internal dynamics on population fluctuations are poorly understood due to the complexity of these interactions. In this paper, we combine time series analysis and simulations to investigate the long-term dynamics of an overexploited population in the Mediterranean Sea, and its link with both fishing-induced demographic changes and hydroclimatic variability. We show that the cyclicity of the catch per unit of effort (CPUE) of European hake Merluccius merluccius (EH) vanished in the 1980s, while the correlation between the CPUE and a local environmental index increased. Using simulations, we then show that the cyclicity observed in the EH biomass before the 1980s can have an internal origin, while that its disappearance could be due to the fishing-induced erosion of the age structure. Our results suggest that fishing can trigger a switch from internally generated to externally forced population fluctuations, the latter being characterised by an increasing dependency of the population on recruitment and ultimately on environmental variability. Hydroclimatic modifications occurring in the Mediterranean in the early 1980s could have enhanced these changes by leading to a mismatch between early life stages of EH and favorable environmental conditions. Our conclusions underline the key effect of the interaction between exploitation and climate on the dynamics of EH and its important consequences for management and conservation.

Description: The buoyancy flux at the air/sea interface plays a key role in water mass transformation and mixing as it modifies surface water density and in turn drives overturning and enhances stratification. It is the interplay of these two independent heat and freshwater buoyancy flux components that is of central importance when analysing mechanisms of the ocean/atmosphere interaction. Here, a diagnostic quantity (ΘB) is presented that allows to capture the relative contribution of both components on the buoyancy flux in one single quantity. Using NCEP reanalysis of heat and freshwater fluxes (1948–2009) demonstrates that ΘB is a convenient tool to analyse both the temporal and spatial variability of their corresponding buoyancy fluxes. For the global ocean the areal extent of buoyancy gain and loss regions changed by 10%, with the largest extent of buoyancy gain during the 1970–1990 period. In the subpolar North Atlantic, and likewise in the South Pacific, decadal variability in freshwater flux is pronounced and, for the latter region, takes control over the total buoyancy flux since the 1980s. Some of the areal extent time series show a significant correlation with large-scale climate indices.