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  • American Institute of Physics  (51,310)
  • American Institute of Physics (AIP)  (46,193)
  • Springer Nature  (42,347)
  • Periodicals Archive Online (PAO)  (24,981)
  • Cambridge University Press  (14,075)
  • 2020-2023  (55)
  • 1990-1994  (152,014)
  • 1935-1939  (26,837)
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  • 1
    Publication Date: 2022-02-21
    Description: The stability of the West Antarctic Ice Sheet is threatened by the incursion of warm Circumpolar Deepwater which flows southwards via cross-shelf troughs towards the coast there melting ice shelves. However, the onset of this oceanic forcing on the development and evolution of the West Antarctic Ice Sheet remains poorly understood. Here, we use single- and multichannel seismic reflection profiles to investigate the architecture of a sediment body on the shelf of the Amundsen Sea Embayment. We estimate the formation age of this sediment body to be around the Eocene-Oligocene Transition and find that it possesses the geometry and depositional pattern of a plastered sediment drift. We suggest this indicates a southward inflow of deep water which probably supplied heat and, thus, prevented West Antarctic Ice Sheet advance beyond the coast at this time. We conclude that the West Antarctic Ice Sheet has likely experienced a strong oceanic influence on its dynamics since its initial formation.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
    Publication Date: 2022-02-11
    Description: Magmatism accompanies rifting along divergent plate boundaries, although its role before continental breakup remains poorly understood. For example, the magma-assisted Northern Main Ethiopian Rift (NMER) lacks current volcanism and clear tectono-magmatic relationships with its contiguous rift portions. Here we define its magmatic behaviour, identifying the most recent eruptive fissures (EF) whose aphyric basalts have a higher Ti content than those of older monogenetic scoria cones (MSC), which are porphyritic and plagioclase-dominated. Despite these differences, calculations highlight a similar parental melt for EF and MSC products, suggesting only a different evolutionary history after melt generation. While MSC magmas underwent a further step of storage at intermediate crustal levels, EF magmas rose directly from the base of the crust without contamination, even below older polygenetic volcanoes, suggesting rapid propagation of transcrustal dikes across solidified magma chambers. Whether this recent condition in the NMER is stable or transient, it indicates a transition from central polygenetic to linear fissure volcanism, indicative of increased tensile conditions and volcanism directly fed from the base of the crust, suggesting transition towards mature rifting.
    Description: Published
    Description: 21821
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: JCR Journal
    Keywords: 04.08. Volcanology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 3
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Xu, L., Roberts, M., Elder, K., Hansman, R., Gagnon, A., & Kurz, M. Radiocarbon in dissolved organic carbon by UV oxidation: an update of procedures and blank characterization at NOSAMS. Radiocarbon, 64(1), (2022): 195-199, https://doi.org/10.1017/rdc.2022.4.
    Description: This note describes improvements of UV oxidation method that is used to measure carbon isotopes of dissolved organic carbon (DOC) at the National Ocean Sciences Accelerator Mass Spectrometry Facility (NOSAMS). The procedural blank is reduced to 2.6 ± 0.6 μg C, with Fm of 0.42 ± 0.10 and δ13C of –28.43 ± 1.19‰. The throughput is improved from one sample per day to two samples per day.
    Description: We gratefully acknowledge support from the U.S. National Science Foundation, via NSF-OCE-1755125.
    Keywords: Blank ; Dissolved organic carbon ; Radiocarbon ; UV-oxidation
    Repository Name: Woods Hole Open Access Server
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  • 4
    Publication Date: 2022-10-28
    Description: From the 2010s on, pattern classification has proven an effective method for flagging alerts of volcano unrest before eruptive activity at Mt. Etna, Italy. The analysis has been applied online to volcanic tremor data, and has supported the surveillance activity of the volcano that provides timely information to Civil Protection and other authorities. However, after declaring an alert, no one knows how long the volcano unrest will last and if a climactic eruptive activity will actually begin. These are critical aspects when considering the effects of a prolonged state of alert. An example of longstanding unrest is related to the Christmas Eve eruption in 2018, which was heralded by several months of almost continuous Strombolian activity. Here, we discuss the usage of thresholds to detect conditions leading to paroxysmal activity, and the challenges associated with defining such thresholds, leveraging a dataset of 52 episodes of lava fountains occurring in 2021. We were able to identify conservative settings regarding the thresholds, allowing for an early warning of impending paroxysm in almost all cases (circa 85% for the first 4 months in 2021, and over 90% for the whole year). The chosen thresholds also proved useful to predict that a paroxysmal activity was about to end. Such information provides reliable numbers for volcanologists for their assessments, based on visual information, which may not be available in bad weather or cloudy conditions.
    Description: Project IMPACT (A multidisciplinary Insight on the kinematics and dynamics of Magmatic Processes at Mt. Etna Aimed at identifying preCursor phenomena and developing early warning sysTems). IMPACT belongs to the Progetti Dipartimentali INGV [DIP7], https://progetti.ingv.it/index.php/it/progetti-dipartimentali/vulcani/impact#informazioni-sul-progetto.
    Description: Published
    Description: 17895
    Description: 4V. Processi pre-eruttivi
    Description: JCR Journal
    Keywords: Volcanic tremor ; Volcano monitoring ; Pattern recognition ; Self Organizing maps ; Fuzzy clustering ; Mt. Etna ; 04.06. Seismology ; 04.08. Volcanology ; 05.01. Computational geophysics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
    Publication Date: 2022-11-14
    Description: Southern Ocean deep-water circulation plays an important role in the global carbon cycle. On geological time-scales, upwelling along the Chilean continental margin likely contributed to the deglacial atmospheric carbon dioxide rise, but little quantitative evidence exists of carbon storage. Here, we use a new X-ray Micro-Computer-Tomography method to assess foraminiferal test dissolution as proxy for paleo-carbonate ion concentrations [CO3^2−]. Our subantarctic Southeast Pacific sediment core depth transect shows significant deep-water [CO3^2−] variations during the Last Glacial Maximum and Deglaciation (10 – 22 ka BP). We provide evidence for an increase in [CO3^2−] during the early deglacial period (15-19 ka BP), followed by a ca. 40 µmol kg^-1 reduction in Lower Circumpolar Deepwater (CDW). This decreased Pacific to Atlantic export of low-carbon CDW contributed to significantly lowered carbon storage within the Southern Ocean, highlighting the importance of a dynamic Pacific–Southern Ocean deep-water reconfiguration for shaping late-glacial oceanic carbon storage, and subsequent deglacial oceanic-atmospheric CO2 transfer.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 6
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    Springer Nature
    In:  EPIC3Nature Communications, Springer Nature, 13(1), pp. 1-10, ISSN: 2041-1723
    Publication Date: 2022-11-24
    Description: 〈jats:title〉Abstract〈/jats:title〉〈jats:p〉Crossing a key atmospheric CO〈jats:sub〉2〈/jats:sub〉 threshold triggered a fundamental global climate reorganisation ~34 million years ago (Ma) establishing permanent Antarctic ice sheets. Curiously, a more dramatic CO〈jats:sub〉2〈/jats:sub〉 decline (~800–400 ppm by the Early Oligocene(~27 Ma)), postdates initial ice sheet expansion but the mechanisms driving this later, rapid drop in atmospheric carbon during the early Oligocene remains elusive and controversial. Here we use marine seismic reflection and borehole data to reveal an unprecedented accumulation of early Oligocene strata (up to 2.2 km thick over 1500 × 500 km) with a major biogenic component in the Australian Southern Ocean. High-resolution ocean simulations demonstrate that a tectonically-driven, one-off reorganisation of ocean currents, caused a unique period where current instability coincided with high nutrient input from the Antarctic continent. This unrepeated and short-lived environment favoured extreme bioproductivity and enhanced sediment burial. The size and rapid accumulation of this sediment package potentially holds ~1.067 × 10〈jats:sup〉15〈/jats:sup〉 kg of the ‘missing carbon’ sequestered during the decline from an Eocene high CO〈jats:sub〉2〈/jats:sub〉-world to a mid-Oligocene medium CO〈jats:sub〉2〈/jats:sub〉-world, highlighting the exceptional role of the Southern Ocean in modulating long-term climate.〈/jats:p〉
    Repository Name: EPIC Alfred Wegener Institut
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  • 7
    Publication Date: 2022-07-13
    Description: The stratified Chilean Comau Fjord sustains a dense population of the cold-water coral (CWC) Desmophyllum dianthus in aragonite supersaturated shallow and aragonite under- saturated deep water. This provides a rare opportunity to evaluate CWC fitness trade-offs in response to physico-chemical drivers and their variability. Here, we combined year-long reciprocal transplantation experiments along natural oceanographic gradients with an in situ assessment of CWC fitness. Following transplantation, corals acclimated fast to the novel environment with no discernible difference between native and novel (i.e. cross-transplanted) corals, demonstrating high phenotypic plasticity. Surprisingly, corals exposed to lowest ara- gonite saturation (Ωarag 〈 1) and temperature (T 〈 12.0 °C), but stable environmental condi- tions, at the deep station grew fastest and expressed the fittest phenotype. We found an inverse relationship between CWC fitness and environmental variability and propose to consider the high frequency fluctuations of abiotic and biotic factors to better predict the future of CWCs in a changing ocean.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 8
    Publication Date: 2022-06-22
    Description: Pliocene–Quaternary faults are relevant structures with which to constrain the seismotectonic context and contribute to the evaluation of the seismic hazard of a region. Many of these faults, however, do not show clear surface evidence even when releasing earthquakes. For these reasons they can be extremely dangerous as they receive relatively little attention and can be difficult to identify. From among the various surface geology studies and/or palaeoseismological investigations, we focus our attention on the integration of different datasets such as seismic reflection profiles, surface kinematic data and the relocation of seismological data, which make it possible to identify and characterize active faults whose dimension and earthquake potential would otherwise not be large enough to make them identifiable. We take as an example the Montespertoli NE-trending fault in southern Tuscany (central Italy) with which we associate the 2016 M=3.9 Castelfiorentino earthquake. This structure is part of a wider (in the order of 15–20 km) crustal-scale shear zone, which may be responsible for strong historical earthquakes in the area.
    Description: Published
    Description: 853 - 872
    Description: 4T. Sismicità dell'Italia
    Description: JCR Journal
    Keywords: active faults ; seismic faults ; Earthquakes ; strike-slip faults ; inner Northern Apennines ; solid earth
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 9
    Publication Date: 2022-08-16
    Description: The El Niño/Southern Oscillation (ENSO), the dominant driver of year-to-year climate variability in the equatorial Pacific Ocean, impacts climate pattern across the globe. However, the response of the ENSO system to past and potential future temperature increases is not fully understood. Here we investigate ENSO variability in the warmer climate of the mid-Pliocene (~3.0–3.3 Ma), when surface temperatures were ~2–3 °C above modern values, in a large ensemble of climate models—the Pliocene Model Intercomparison Project. We show that the ensemble consistently suggests a weakening of ENSO variability, with a mean reduction of 25% (±16%). We further show that shifts in the equatorial Pacific mean state cannot fully explain these changes. Instead, ENSO was suppressed by a series of off-equatorial processes triggered by a northward displacement of the Pacific intertropical convergence zone: weakened convective feedback and intensified Southern Hemisphere circulation, which inhibit various processes that initiate ENSO. The connection between the climatological intertropical convergence zone position and ENSO we find in the past is expected to operate in our warming world with important ramifications for ENSO variability.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 10
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    Cambridge University Press
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in McNichol, A., Key, R., & Guilderson, T. Global ocean radiocarbon programs. Radiocarbon, (2022): 1–13, https://doi.org/10.1017/rdc.2022.17.
    Description: The importance of studying the radiocarbon content of dissolved inorganic carbon (DI14C) in the oceans has been recognized for decades. Starting with the GEOSECS program in the 1970s, 14C sampling has been a part of most global survey programs. Early results were used to study air-sea gas exchange while the more recent results are critical for helping calibrate ocean general circulation models used to study the effects of climate change. Here we summarize the major programs and discuss some of the important insights the results are starting to provide.
    Description: Authors received funding from the National Science Foundation OCE-85865400 (APM) and a Woods Hole Oceanographic Technical Staff Award (APM).
    Keywords: Dissolved inorganic carbon ; Ocean models ; Oceanography ; Radiocarbon
    Repository Name: Woods Hole Open Access Server
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  • 11
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Druffel, E., Beaupre, S., Grotheer, H., Lewis, C., McNichol, A., Mollenhauer, G., & Walker, B. Marine organic carbon and radiocarbon – present and future challenges. Radiocarbon, (2022): 1-17, https://doi.org/10.1017/RDC.2021.105.
    Description: We discuss present and developing techniques for studying radiocarbon in marine organic carbon (C). Bulk DOC (dissolved organic C) Δ14C measurements reveal information about the cycling time and sources of DOC in the ocean, yet they are time consuming and need to be streamlined. To further elucidate the cycling of DOC, various fractions have been separated from bulk DOC, through solid phase extraction of DOC, and ultrafiltration of high and low molecular weight DOC. Research using 14C of DOC and particulate organic C separated into organic fractions revealed that the acid insoluble fraction is similar in 14C signature to that of the lipid fraction. Plans for utilizing this methodology are described. Studies using compound specific radiocarbon analyses to study the origin of biomarkers in the marine environment are reviewed and plans for the future are outlined. Development of ramped pyrolysis oxidation methods are discussed and scientific questions addressed. A modified elemental analysis (EA) combustion reactor is described that allows high particulate organic C sample throughput by direct coupling with the MIniCArbonDAtingSystem.
    Keywords: CSRA ; Dissolved organic carbon ; Methodology ; Organic carbon ; Radiocarbon
    Repository Name: Woods Hole Open Access Server
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  • 12
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Priscu, J. C., Kalin, J., Winans, J., Campbell, T., Siegfried, M. R., Skidmore, M., Dore, J. E., Leventer, A., Harwood, D. M., Duling, D., Zook, R., Burnett, J., Gibson, D., Krula, E., Mironov, A., McManis, J., Roberts, G., Rosenheim, B. E., Christner, B. C., Kasic, K., Fricker, H. A., Lyons, W. B., Barker, J., Bowling, M., Collins, B., Davis, C., Gagnon, A., Gardner, C., Gustafson, C., Kim, O-S., Li, W., Michaud, A., Patterson, M. O., Tranter, M., Ryan Venturelli, R., Trista Vick-Majors, T., & Elsworth, C. Scientific access into Mercer Subglacial Lake: scientific objectives, drilling operations and initial observations. Annals of Glaciology, 62(85–86), (2021): 340–352, https://doi.org/10.1017/aog.2021.10.
    Description: The Subglacial Antarctic Lakes Scientific Access (SALSA) Project accessed Mercer Subglacial Lake using environmentally clean hot-water drilling to examine interactions among ice, water, sediment, rock, microbes and carbon reservoirs within the lake water column and underlying sediments. A ~0.4 m diameter borehole was melted through 1087 m of ice and maintained over ~10 days, allowing observation of ice properties and collection of water and sediment with various tools. Over this period, SALSA collected: 60 L of lake water and 10 L of deep borehole water; microbes 〉0.2 μm in diameter from in situ filtration of ~100 L of lake water; 10 multicores 0.32–0.49 m long; 1.0 and 1.76 m long gravity cores; three conductivity–temperature–depth profiles of borehole and lake water; five discrete depth current meter measurements in the lake and images of ice, the lake water–ice interface and lake sediments. Temperature and conductivity data showed the hydrodynamic character of water mixing between the borehole and lake after entry. Models simulating melting of the ~6 m thick basal accreted ice layer imply that debris fall-out through the ~15 m water column to the lake sediments from borehole melting had little effect on the stratigraphy of surficial sediment cores.
    Description: This material is based upon work supported by the US National Science Foundation, Section for Antarctic Sciences, Antarctic Integrated System Science program as part of the interdisciplinary (Subglacial Antarctic Lakes Scientific Access (SALSA): Integrated study of carbon cycling in hydrologically-active subglacial environments) project (NSF-OPP 1543537, 1543396, 1543405, 1543453 and 1543441). Ok-Sun Kim was funded by the Korean Polar Research Institute. We are particularly thankful to the SALSA traverse personnel for crucial technical and logistical support. The United States Antarctic Program enabled our fieldwork; the New York Air National Guard and Kenn Borek Air provided air support; UNAVCO provided geodetic instrument support. Hot water drilling activities, including repair and upgrade modifications of the WISSARD hot water drill system, for the SALSA project were supported by a subaward from the Ice Drilling Program of Dartmouth College (NSF-PLR 1327315) to the University of Nebraska-Lincoln. J. Lawrence assisted with manuscript preparation. Finally, we are grateful to C. Dean, the SALSA Project Manager, and R. Ricards, SALSA Project Coordinator at McMurdo Station, for their organizational skills, and B. Huber of Lamont-Doherty Earth Observatory for providing the SBE39 PT sensors and the Nortek Aquadopp current meter and assisting with interpretation of the data. B. Huber also provided helpful input on programing and calibrating the SBE19PlusV2 6112 CTD.
    Keywords: Antarctic glaciology ; Basal ice ; Biogeochemistry ; Glacial sedimentology ; Subglacial lakes
    Repository Name: Woods Hole Open Access Server
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  • 13
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    Cambridge University Press
    In:  EPIC3Climate Change 2022: Impacts, adaptation and vulnerability. Contribution of the WGII to the 6th assessment report of the intergovernmental panel on climate change, ,, IPCC AR6 WGII, https://www.ipcc.ch/report/ar6/wg2/downloads/report/IPCC_AR6_WGII_FinalDraft_Chapter03.pdf, Cambridge University Press
    Publication Date: 2022-08-23
    Repository Name: EPIC Alfred Wegener Institut
    Type: Inbook , NonPeerReviewed
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  • 14
    Publication Date: 2022-06-27
    Description: The sea ice surface temperature is important to understand the Arctic winter heat budget. We conducted 35 helicopter flights with an infrared camera in winter 2019/2020 during the Multidisciplinary Drifting Observatory for the Study of Arctic Climate (MOSAiC) expedition. The flights were performed from a local, 5 to 10 km scale up to a regional, 20 to 40 km scale. The infrared camera recorded thermal infrared brightness temperatures, which we converted to surface temperatures. More than 150000 images from all flights can be investigated individually. As an advanced data product, we created surface temperature maps for every flight with a 1 m resolution. We corrected image gradients, applied an ice drift correction, georeferenced all pixels, and corrected the surface temperature by its natural temporal drift, which results in time-fixed surface temperature maps for a consistent analysis of one flight. The temporal and spatial variability of sea ice characteristics is an important contribution to an increased understanding of the Arctic heat budget and, in particular, for the validation of satellite products.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 15
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    Cambridge University Press
    In:  EPIC3Climate Change 2022: Impacts, adaptation and vulnerability. Contribution of the WGII to the 6th assessment report of the intergovernmental panel on climate change, IPCC AR6 WGII, Climate Change 2022: Impacts, adaptation and vulnerability. Contribution of the WGII to the 6th assessment report of the intergovernmental panel on climate change, IPCC AR6 WGII, https://www.ipcc.ch/report/ar6/wg2/downloads/report/IPCC_AR6_WGII_FinalDraft_Chapter02.pdf, Cambridge University Press, 5 p., pp. 22-26
    Publication Date: 2022-06-17
    Repository Name: EPIC Alfred Wegener Institut
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  • 16
    Publication Date: 2022-06-14
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Luo, E., Leu, A. O., Eppley, J. M., Karl, D. M., & DeLong, E. F. Diversity and origins of bacterial and archaeal viruses on sinking particles reaching the abyssal ocean. ISME Journal, 16, : 1627–1635, https://doi.org/10.1038/s41396-022-01202-1.
    Description: Sinking particles and particle-associated microbes influence global biogeochemistry through particulate matter export from the surface to the deep ocean. Despite ongoing studies of particle-associated microbes, viruses in these habitats remain largely unexplored. Whether, where, and which viruses might contribute to particle production and export remain open to investigation. In this study, we analyzed 857 virus population genomes associated with sinking particles collected over three years in sediment traps moored at 4000 m in the North Pacific Subtropical Gyre. Particle-associated viruses here were linked to cellular hosts through matches to bacterial and archaeal metagenome-assembled genome (MAG)-encoded prophages or CRISPR spacers, identifying novel viruses infecting presumptive deep-sea bacteria such as Colwellia, Moritella, and Shewanella. We also identified lytic viruses whose abundances correlated with particulate carbon flux and/or were exported from the photic to abyssal ocean, including cyanophages. Our data are consistent with some of the predicted outcomes of the viral shuttle hypothesis, and further suggest that viral lysis of both autotrophic and heterotrophic prokaryotes may play a role in carbon export. Our analyses revealed the diversity and origins of prevalent viruses found on deep-sea sinking particles and identified prospective viral groups for future investigation into processes that govern particle export in the open ocean.
    Description: This project is funded by grants from the Simons Foundation (#329108 to EFD and DMK, #721223 to EFD, and #721252 to DMK) and the Gordon and Betty Moore Foundation (GBMF3777 to EFD and GBMF3794 to DMK). Partial support for EL was provided by the Natural Sciences and Engineering Research Council of Canada (PGSD3-487490-2016).
    Repository Name: Woods Hole Open Access Server
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  • 17
    Publication Date: 2022-07-06
    Description: Identifying and quantifying nitrogen pools is essential for understanding the nitrogen cycle in aquatic ecosystems. The ubiquitous diatoms represent an overlooked nitrate pool as they can accumulate nitrate intracellularly and utilize it for nitrogen assimilation, dissipation of excess photosynthetic energy, and Dissimilatory Nitrate Reduction to Ammonium (DNRA). Here, we document the global co-occurrence of diatoms and intracellular nitrate in phototrophic microbial communities in freshwater (n = 69), coastal (n = 44), and open marine (n = 4) habitats. Diatom abundance and total intracellular nitrate contents in water columns, sediments, microbial mats, and epilithic biofilms were highly significantly correlated. In contrast, diatom community composition had only a marginal influence on total intracellular nitrate contents. Nitrate concentrations inside diatom cells exceeded ambient nitrate concentrations ∼100–4000-fold. The collective intracellular nitrate pool of the diatom community accounted for 〈1% of total nitrate in pelagic habitats and 65–95% in benthic habitats. Accordingly, nitrate-storing diatoms are emerging as significant contributors to benthic nitrogen cycling, in particular through Dissimilatory Nitrate Reduction to Ammonium activity under anoxic conditions.
    Repository Name: EPIC Alfred Wegener Institut
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  • 18
    Publication Date: 2022-07-20
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tan, S., Pratt, L. J., Voet, G., Cusack, J. M., Helfrich, K. R., Alford, M. H., Girton, J. B., & Carter, G. S. Hydraulic control of flow in a multi-passage system connecting two basins. Journal of Fluid Mechanics, 940, (2022): A8, https://doi.org/10.1017/jfm.2022.212.
    Description: When a fluid stream in a conduit splits in order to pass around an obstruction, it is possible that one branch will be critically controlled while the other remains not so. This is apparently the situation in Pacific Ocean abyssal circulation, where most of the northward flow of Antarctic bottom water passes through the Samoan Passage, where it is hydraulically controlled, while the remainder is diverted around the Manihiki Plateau and is not controlled. These observations raise a number of questions concerning the dynamics necessary to support such a regime in the steady state, the nature of upstream influence and the usefulness of rotating hydraulic theory to predict the partitioning of volume transport between the two paths, which assumes the controlled branch is inviscid. Through the use of a theory for constant potential vorticity flow and accompanying numerical model, we show that a steady-state regime similar to what is observed is dynamically possible provided that sufficient bottom friction is present in the uncontrolled branch. In this case, the upstream influence that typically exists for rotating channel flow is transformed into influence into how the flow is partitioned. As a result, the partitioning of volume flux can still be reasonably well predicted with an inviscid theory that exploits the lack of upstream influence.
    Description: This work was supported by the National Science Foundation under grants OCE-1029268, OCE-1029483, OCE-1657264, OCE-1657795, OCE-1657870 and OCE-1658027.
    Repository Name: Woods Hole Open Access Server
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  • 19
    Publication Date: 2022-03-16
    Description: Of all the socio-economic changes caused by the Covid-19 pandemic, the disruption to workforce organizations will probably leave the largest indelible mark. The way work will be organized in the future will be closely linked to the experience of work-ing under the same institution’s response to the pandemic. This paper aims to fill the gap in knowledge about smart working (SW) in public organizations, with a focus on the experience of the employees of two Italian research organizations, CNR and INGV. Analysing primary data, it explored and assessed how SW had been experi-enced following the implementation of governmental measures aimed at limiting the spread of COVID-19
    Description: Published
    Description: 815–833
    Description: 2TM. Divulgazione Scientifica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 20
    Publication Date: 2022-03-16
    Description: Data visualization, and to a lesser extent data sonification, are classic tools to the scientific community. However, these two approaches are very rarely combined, although they are highly complementary: our visual system is good at recognizing spatial patterns, whereas our auditory system is better tuned for temporal patterns. In this article, data representation methods are proposed that combine visualization, sonification, and spatial audio techniques, in order to optimize the user’s perception of spatial and temporal patterns in a single display, to increase the feeling of immersion, and to take advantage of multimodal integration mechanisms. Three seismic data sets are used to illustrate the methods, covering different physical phenomena, time scales, spatial distributions, and spatio-temporal dynamics. The methods are adapted to the specificities of each data set, and to the amount of information that the designer wants to display. This leads to further developments, namely the use of audification with two time scales, the switch from pure audification to time-modulated noise, and the switch from pure audification to sonic icons. First user feedback from live demonstrations indicates that the methods presented in this article seem to enhance the perception of spatio-temporal patterns, which is a key parameter to the understanding of seismically active systems, and a step towards apprehending the processes that drive this activity.
    Description: Published
    Description: 125–142
    Description: 7T. Variazioni delle caratteristiche crostali e "precursori"
    Description: JCR Journal
    Keywords: 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 21
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    Cambridge University Press
    In:  EPIC3Antarctic Science, Cambridge University Press, 33(6), pp. 575-595, ISSN: 0954-1020
    Publication Date: 2022-01-13
    Description: The waters along the West Antarctic Peninsula (WAP) have experienced warming and increased freshwater inputs from melting sea ice and glaciers in recent decades. Challenges exist in understanding the consequences of these changes on the inorganic carbon system in this ecologically important and highly productive ecosystem. Distributions of dissolved inorganic carbon (CT), total alkalinity (AT) and nutrients revealed key physical, biological and biogeochemical controls of the calcium carbonate saturation state (Ωaragonite) in different water masses across the WAP shelf during the summer. Biological production in spring and summer dominated changes in surface water Ωaragonite (ΔΩaragonite up to +1.39; ∼90%) relative to underlying Winter Water. Sea-ice and glacial meltwater constituted a minor source of AT that increased surface water Ωaragonite (ΔΩaragonite up to +0.07; ∼13%). Remineralization of organic matter and an influx of carbon-rich brines led to cross-shelf decreases in Ωaragonite in Winter Water and Circumpolar Deep Water. A strong biological carbon pump over the shelf created Ωaragonite oversaturation in surface waters and suppression of Ωaragonite in subsurface waters. Undersaturation of aragonite occurred at 〈 ∼1000 m. Ongoing changes along the WAP will impact the biologically driven and meltwater-driven processes that influence the vulnerability of shelf waters to calcium carbonate undersaturation in the future.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev , info:eu-repo/semantics/article
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  • 22
    Publication Date: 2021-11-03
    Description: Short-term earthquake clustering properties in the Eastern Aegean Sea (Greece) area investigated through the application of an epidemic type stochastic model (Epidemic Type Earthquake Sequence; ETES). The computations are performed in an earthquake catalog covering the period 2008 to 2020 and including 2332 events with a completeness threshold of Mc = 3.1 and separated into two subcatalogs. The first subcatalog is employed for the learning period, which is between 2008/01/01 and 2016/12/31 (N = 1197 earthquakes), and used for the model’s parameters estimation. The second subcatalog from 2017/01/01 to 2020/11/10 (1135 earthquakes), in which the sequences of 2017 Mw = 6.4 Lesvos, 2017 Mw = 6.6 Kos and 2020 Mw = 7.0 Samos main shocks are included, and used for a retrospective forecast testing based on the constructed model. The estimated model parameters imply a swarm like behavior, indicating the ability of earthquakes of small to moderate magnitude above Mc to produce their own offsprings, along with the stronger earthquakes. The retrospective evaluation of the model is examined in the three aftershock sequences, where lack of foreshocks resulted in low predictability of the mainshocks, with estimated daily probabilities around 10– 5. Immediately after the mainshocks occurrence the model adjusts with notable resemblance between the expected and observed aftershock rates, particularly for earthquakes with M ≥ 3.5.
    Description: Published
    Description: 1085–1099
    Description: 6T. Studi di pericolosità sismica e da maremoto
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 23
    Publication Date: 2021-11-29
    Description: This work presents an up-to-date model for the simulation of non-stationary ground motions, including several novelties compared to the original study of Sabetta and Pugliese (Bull Seism Soc Am 86:337–352, 1996). The selection of the input motion in the framework of earthquake engineering has become progressively more important with the growing use of nonlinear dynamic analyses. Regardless of the increasing availability of large strong motion databases, ground motion records are not always available for a given earthquake scenario and site condition, requiring the adoption of simulated time series. Among the different techniques for the generation of ground motion records, we focused on the methods based on stochastic simulations, considering the time- frequency decomposition of the seismic ground motion. We updated the non-stationary stochastic model initially developed in Sabetta and Pugliese (Bull Seism Soc Am 86:337–352, 1996) and later modified by Pousse et al. (Bull Seism Soc Am 96:2103–2117, 2006) and Laurendeau et al. (Nonstationary stochastic simulation of strong ground-motion time histories: application to the Japanese database. 15 WCEE Lisbon, 2012). The model is based on the S-transform that implicitly considers both the amplitude and frequency modulation. The four model parameters required for the simulation are: Arias intensity, significant duration, central frequency, and frequency bandwidth. They were obtained from an empirical ground motion model calibrated using the accelerometric records included in the updated Italian strong-motion database ITACA. The simulated accelerograms show a good match with the ground motion model prediction of several amplitude and frequency measures, such as Arias intensity, peak acceleration, peak velocity, Fourier spectra, and response spectra.
    Description: Published
    Description: 3287–3315
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
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  • 24
    Publication Date: 2021-12-01
    Description: Probabilistic earthquake locations provide confidence intervals for the hypocentre solutions such as errors encountered in the position, the origin time, and in magnitude. If the relationship of the parameters relative to the local arrangement of the seismic network is considered, such as the node distance, the number of stations, the seismic gap, and the quality of phase readings), the uncertainties can then provide insights on the location capability of the network. In this paper, we collect the earthquake data recorded from the Italian Seismic Network for a time span of 5 years. The data pertain to three different catalogues according to the progressive refinement phases of the location procedure: automatic location, revised location, and published location. By means of spatial analysis,we assess the distribution of the location-related and network-related estimators across the study area. These estimators are subsequently combined to assess the existence of spatial correlations at a local scale. The results indicate that the Italian network is generally able to provide robust locations at the national scale and for smaller earthquakes, and the elongated shape of Italy (and of its network) does not cause systematic bias in the locations. However, we highlight the existence of subregions in which the performance of the network is weaker. At present, a unique 2D, 3-layer velocity model is used for the earthquake location procedure, and this could represent the main limitation for the improvement of the locations. Therefore, the assessment of locally optimized velocity models is the priority for the homogenization and the improvement of the Italian Seismic Network performance.
    Description: Published
    Description: 1061–1076
    Description: 1IT. Reti di monitoraggio e sorveglianza
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 25
    Publication Date: 2021-12-06
    Description: This paper provides a new contribution to the construction of the complex and fragmentary mosaic of the Late Holocene earthquakes history of the İznik segment of the central strand of the North Anatolian Fault (CNAF) in Turkey. The CNAF clearly displays lower dextral slip rates with respect to the northern strand however, surface rupturing and large damaging earthquakes (M 〉 7) occurred in the past, leaving clear signatures in the built and natural environments. The association of these historical events to specific earthquake sources (e.g., Gemlik, İznik, or Geyve fault segments) is still a matter of debate. We excavated two trenches across the İznik fault trace near Mustafali, a village about 10 km WSW of İznik where the morphological fault scarp was visible although modified by agricultural activities. Radiocarbon and TL dating on samples collected from the trenches show that the displaced deposits are very recent and span the past 2 millennia at most. Evidence for four surface faulting events was found in the Mustafali trenches. The integration of these results with historical data and previous paleoseismological data yields an updated Late Holocene history of surface-rupturing earthquakes along the İznik Fault in 1855, 740 (715), 362, and 121 CE. Evidence for the large M7 + historical earthquake dated 1419 CE generally attributed to this fault, was not found at any trench site along the İznik fault nor in the subaqueous record. This unfit between paleoseismological, stratigraphic, and historical data highlights one more time the urge for extensive paleoseismological trenching and offshore campaigns because of the high potential to solve the uncertainties on the seismogenic history (age, earthquake location, extent of the rupture and size) of this portion of NAFZ and especially on the attribution of historical earthquakes to the causative fault.
    Description: Published
    Description: 115–128
    Description: 2T. Deformazione crostale attiva
    Description: N/A or not JCR
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 26
    Publication Date: 2021-11-29
    Description: In this paper the site categorization criteria and the corresponding site amplification factors proposed in the 2021 draft of Part 1 of Eurocode 8 (2021-draft, CEN/TC250/SC8 Working Draft N1017) are first introduced and compared with the current version of Eurocode 8, as well as with site amplification factors from recent empirical ground motion prediction equations. Afterwards, these values are checked by two approaches. First, a wide dataset of strong motion records is built, where recording stations are classified according to 2021-draft, and the spectral amplifications are empirically estimated computing the site-to-site residuals from regional and global ground motion models for reference rock conditions. Second, a comprehensive parametric numerical study of one-dimensional (1D) site amplification is carried out, based on randomly generated shear-wave velocity profiles, classified according to the new criteria. A reasonably good agreement is found by both approaches. The most relevant discrepancies occur for the shallow soft soil conditions (soil category E) that, owing to the complex interaction of shear wave velocity, soil deposit thickness and frequency range of the excitation, show the largest scatter both in terms of records and of 1D numerical simulations. Furthermore, 1D numerical simulations for soft soil conditions tend to provide lower site amplification factors than 2021-draft, as well as lower than the corresponding site-to-site residuals from records, because of higher impact of non-linear (NL) site effects in the simulations. A site-specific study on NL effects at three KiK-net stations with a significantly large amount of high-intensity recorded ground motions gives support to the 2021-draft NL reduction factors, although the very limited number of recording stations allowing such analysis prevents deriving more general implications. In the presence of such controversial arguments, it is reasonable that a standard should adopt a prudent solution, with a limited reduction of the site amplification factors to account for NL soil response, while leaving the possibility to carry out site-specific estimations of such factors when sufficient information is available to model the ground strain dependency of local soil properties.
    Description: Published
    Description: 4199–4234
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 27
    Publication Date: 2021-11-29
    Description: ShakeMap is the tool to evaluate the ground motion effect of earthquakes in vast areas. It is useful to delimit the zones where the shaking is expected to have been most significant, for civil defense rapid response. From the earthquake engineering point of view, it can be used to infer the seismic actions on the built environment to calibrate vulnerability models or to define the reconstruction policies based on observed damage vs shaking. In the case of long-lasting seismic sequences, it can be useful to develop ShakeMap envelopes, that is, maps of the largest ground intensity among those from the ShakeMap of (selected) events of a seismic sequence, to delimit areas where the effects of the whole sequence have been of structural engineering relevance. This study introduces ShakeMap envelopes and discusses them for the central Italy 2016–2017 seismic sequence. The specific goals of the study are: (i) to compare the envelopes and the ShakeMap of the main events of the sequence to make the case for sequence-based maps; (ii) to quantify the exceedance of design seismic actions based on the envelopes; (iii) to make envelopes available for further studies and the reconstruction planning; (iv) to gather insights on the (repeated) exceedance of design seismic actions at some sites. Results, which include considerations of uncertainty in ShakeMap, show that the sequence caused exceedance of design hazard in thousands of square kilometers. The most relevant effects of the sequence are, as expected, due to the mainshock, yet seismic actions larger than those enforced by the code for structural design are found also around the epicenters of the smaller magnitude events. At some locations, the succession of ground-shaking that has excited structures, provides insights on structural damage accumulation that has likely taken place; something that is not accounted for explicitly in modern seismic design. The envelopes developed are available as supplemental material.
    Description: Published
    Description: 5391–5414
    Description: 5T. Sismologia, geofisica e geologia per l'ingegneria sismica
    Description: JCR Journal
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  • 28
    Publication Date: 2021-12-13
    Description: Analyzing seismic data to get information about earthquakes has always been a major task for seismologists and, more in general, for geophysicists. Recently, thanks to the technological development of observation systems, more and more data are available to perform such tasks. However, this data “grow up” makes “human possibility” of data processing more complex in terms of required efforts and time demanding. That is why new technological approaches such as artificial intelligence are becoming very popular and more and more exploited. In this paper, we explore the possibility of interpreting seismic waveform segments by means of pre-trained deep learning. More specifically, we apply convolutional networks to seismological waveforms recorded at local or regional distances without any pre-elaboration or filtering. We show that such an approach can be very successful in determining if an earthquake is “included” in the seismic wave image and in estimating the distance between the earthquake epicenter and the recording station.
    Description: Published
    Description: 1347–1359
    Description: 1T. Struttura della Terra
    Description: 3T. Fisica dei terremoti e Sorgente Sismica
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 29
    Publication Date: 2021-10-25
    Description: Themain climatological features of the ionospheric equivalent slab thickness (τ ) for the Northern hemispheremidlatitudes are analyzed. F2-layer peak electron density values recorded at three midlatitude ionospheric stations (Chilton 51.5° N, 0.6° W, U.K.; Roquetes 40.8° N, 0.5° E, Spain;Wallops Island 37.9° N, 75.5°W, USA) and vertical total electron content values from colocated ground-based Global Navigation Satellite System receivers are used to calculate a dataset of τ values for the last two solar cycles, considering only magnetically quiet periods. Results are presented both as grids of binned medians and as boxplots as a function of local time and month of the year, for different solar activity levels. Corresponding trends are first compared to those output by the midlatitude empirical model developed by Fox et al. (Radio Sci 26:429–438, 1991) and then discussed in the light of what is known so far. From this investigation, the strong need to implement an improved empirical model of τ has emerged. Both Space Weather and Space Geodesy applications might benefit from such model. Therefore, both the dataset and the methodology described in the paper represent a first fundamental step aimed at implementing an empirical climatological model of the ionospheric equivalent slab thickness. The study highlighted also that at midlatitudes τ shows the following main patterns: daytime values considerably smaller than nighttime ones (except in summer); well-defined maxima at solar terminator hours; a greater dispersion during nighttime and solar terminator hours; no clear and evident solar activity dependence.
    Description: Published
    Description: 124
    Description: 2A. Fisica dell'alta atmosfera
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 30
    Publication Date: 2021-11-26
    Description: The eruption of basaltic magmas dominates explosive volcanism on Earth and other planets within the Solar System. The mechanism through which continuous magma fragments into volcanic particles is central in governing eruption dynamics and the ensuing hazards. However, the mechanism of fragmentation of basaltic magmas is still disputed, with both viscous and brittle mechanisms having been proposed. Here we carry out textural analysis of the products of ten eruptions from seven volcanoes by scanning electron microscopy. We find broken crystals surrounded by intact glass that testify to the brittle fragmentation of basaltic magmas during explosive activity worldwide. We then replicated the natural textures of broken crystals in laboratory experiments where variably crystallized basaltic melt was fragmented by rapid deformation. The experiments reveal that crystals are broken by the propagation of a network of fractures through magma, and that afterwards the fractures heal by viscous flow of the melt. Fracturing and healing affect gas mobility, stress distribution, and bubble and crystal size distributions in magma. Our results challenge the idea that the grain size distribution of basaltic eruption products reflects the density of fractures that initially fragmented the magma and ultimately indicate that brittle fracturing and viscous healing of magma may underlie basaltic explosive eruptions globally.
    Description: Published
    Description: 248–254
    Description: 4V. Processi pre-eruttivi
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
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  • 31
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    Springer Nature
    Publication Date: 2021-12-24
    Description: This book serves as a guide to discovering the most interesting volcano sites in Italy. Accompanied by some extraordinary contemporary images of active Neapolitan volcanoes, it explains the main volcanic processes that have been shaping the landscape of the Campania region and influencing human settlements in this area since Greek and Roman times and that have prompted leading international scientists to visit and study this natural volcanology laboratory. While volcanology is the central topic, the book also addresses other aspects related to the area’s volcanism and is divided into three sections: 1) Neapolitan volcanic activity and processes (with a general introduction to volcanology and its development around Naples together with descriptions of the landscape and the main sites worth visiting); 2) Volcanoes and their interactions with local human settlements since the Bronze Age, recent population growth and the transformation of the territory; 3) The risks posed by Neapolitan Volcanoes, their recent activity and the problem of forecasting any future eruption.
    Description: Published
    Description: 2TM. Divulgazione Scientifica
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 32
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    Unknown
    Springer Nature
    In:  EPIC3npj Climate and Atmospheric Science, Springer Nature, 4(1), ISSN: 2397-3722
    Publication Date: 2022-02-15
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 33
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in [Schiller, C. M., Whitlock, C., Elder, K. L., Iverson, N. A., & Abbott, M. B. Erroneously old radiocarbon ages from terrestrial pollen concentrates in Yellowstone Lake, Wyoming, USA. Radiocarbon, 63(1), (2021): 321-342, https://doi.org/10.1017/RDC.2020.118.
    Description: Accelerator mass spectrometry (AMS) dating of pollen concentrates is often used in lake sediment records where large, terrestrial plant remains are unavailable. Ages produced from chemically concentrated pollen as well as manually picked Pinaceae grains in Yellowstone Lake (Wyoming) sediments were consistently 1700–4300 cal years older than ages established by terrestrial plant remains, tephrochronology, and the age of the sediment-water interface. Previous studies have successfully utilized the same laboratory space and methods, suggesting the source of old-carbon contamination is specific to these samples. Manually picking pollen grains precludes admixture of non-pollen materials. Furthermore, no clear source of old pollen grains occurs on the deglaciated landscape, making reworking of old pollen grains unlikely. High volumes of CO2 are degassed in the Yellowstone Caldera, potentially introducing old carbon to pollen. While uptake of old CO2 through photosynthesis is minor (F14C approximately 0.99), old-carbon contamination may still take place in the water column or in surficial lake sediments. It remains unclear, however, what mechanism allows for the erroneous ages of highly refractory pollen grains while terrestrial plant remains were unaffected. In the absence of a satisfactory explanation for erroneously old radiocarbon ages from pollen concentrates, we propose steps for further study.
    Description: This research was supported by NSF Grant No. 1515353 to C. Whitlock and sampling in Yellowstone National Park was conducted under permits YELL-SCI-0009 and YELL-SCI-5054.
    Keywords: AMS dating ; Chronology ; Contamination ; Paleoecology ; Pine
    Repository Name: Woods Hole Open Access Server
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  • 34
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Babbin, A. R., Tamasi, T., Dumit, D., Weber, L., Rodríguez, M. V. I., Schwartz, S. L., Armenteros, M., Wankel, S. D., & Apprill, A. Discovery and quantification of anaerobic nitrogen metabolisms among oxygenated tropical Cuban stony corals. ISME Journal, (2020), doi:10.1038/s41396-020-00845-2.
    Description: Coral reef health depends on an intricate relationship among the coral animal, photosynthetic algae, and a complex microbial community. The holobiont can impact the nutrient balance of their hosts amid an otherwise oligotrophic environment, including by cycling physiologically important nitrogen compounds. Here we use 15N-tracer experiments to produce the first simultaneous measurements of ammonium oxidation, nitrate reduction, and nitrous oxide (N2O) production among five iconic species of reef-building corals (Acropora palmata, Diploria labyrinthiformis, Orbicella faveolata, Porites astreoides, and Porites porites) in the highly protected Jardines de la Reina reefs of Cuba. Nitrate reduction is present in most species, but ammonium oxidation is low potentially due to photoinhibition and assimilatory competition. Coral-associated rates of N2O production indicate a widespread potential for denitrification, especially among D. labyrinthiformis, at rates of ~1 nmol cm−2 d−1. In contrast, A. palmata displays minimal active nitrogen metabolism. Enhanced rates of nitrate reduction and N2O production are observed coincident with dark net respiration periods. Genomes of bacterial cultures isolated from multiple coral species confirm that microorganisms with the ability to respire nitrate anaerobically to either dinitrogen gas or ammonium exist within the holobiont. This confirmation of anaerobic nitrogen metabolisms by coral-associated microorganisms sheds new light on coral and reef productivity.
    Description: Research was conducted in the Gardens of the Queen, Cuba in accordance with the requirements of the Republic of Cuba, conducted under permit NV2370 and NV2568 issued by the Ministerio de Relaciones Exteriores. We gratefully acknowledge funding for this research by MIT Sea Grant award #2018-DOH-49-LEV, Simons Foundation award #622065, and MIT ESI seed funding to ARB, the MIT Montrym, Ferry, and mTerra Seed Grant Funds, and the generous contributions by Dr Bruce L. Heflinger.
    Repository Name: Woods Hole Open Access Server
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  • 35
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Seyler, L. M., Trembath-Reichert, E., Tully, B. J., & Huber, J. A. Time-series transcriptomics from cold, oxic subseafloor crustal fluids reveals a motile, mixotrophic microbial community. Isme Journal, (2020), doi:10.1038/s41396-020-00843-4.
    Description: The oceanic crustal aquifer is one of the largest habitable volumes on Earth, and it harbors a reservoir of microbial life that influences global-scale biogeochemical cycles. Here, we use time series metagenomic and metatranscriptomic data from a low-temperature, ridge flank environment representative of the majority of global hydrothermal fluid circulation in the ocean to reconstruct microbial metabolic potential, transcript abundance, and community dynamics. We also present metagenome-assembled genomes from recently collected fluids that are furthest removed from drilling disturbances. Our results suggest that the microbial community in the North Pond aquifer plays an important role in the oxidation of organic carbon within the crust. This community is motile and metabolically flexible, with the ability to use both autotrophic and organotrophic pathways, as well as function under low oxygen conditions by using alternative electron acceptors such as nitrate and thiosulfate. Anaerobic processes are most abundant in subseafloor horizons deepest in the aquifer, furthest from connectivity with the deep ocean, and there was little overlap in the active microbial populations between sampling horizons. This work highlights the heterogeneity of microbial life in the subseafloor aquifer and provides new insights into biogeochemical cycling in ocean crust.
    Description: The Gordon and Betty Moore Foundation sponsored most of the observatory components at North Pond through grant GBMF1609. This work was supported by NSF OCE-1062006, OCE-1745589 and OCE-1635208 to J.A.H. E.T.R. was supported by a NASA Postdoctoral Fellowship with the NASA Astrobiology Institute and a L’Oréal USA For Women in Science Fellowship. The Center for Dark Energy Biosphere Investigations (C-DEBI OCE-0939564) also supported the participation of J.A.H. and B.T. This is C-DEBI contribution number 548.
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  • 36
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Baker, M. G., Aster, R. C., Wiens, D. A., Nyblade, A., Bromirski, P. D., Gerstoft, P., & Stephen, R. A. Teleseismic earthquake wavefields observed on the Ross Ice Shelf. Journal of Glaciology, 67(261), (2021): 58-74, https://doi.org/10.1017/jog.2020.83.
    Description: Observations of teleseismic earthquakes using broadband seismometers on the Ross Ice Shelf (RIS) must contend with environmental and structural processes that do not exist for land-sited seismometers. Important considerations are: (1) a broadband, multi-mode ambient wavefield excited by ocean gravity wave interactions with the ice shelf; (2) body wave reverberations produced by seismic impedance contrasts at the ice/water and water/seafloor interfaces and (3) decoupling of the solid Earth horizontal wavefield by the sub-shelf water column. We analyze seasonal and geographic variations in signal-to-noise ratios for teleseismic P-wave (0.5–2.0 s), S-wave (10–15 s) and surface wave (13–25 s) arrivals relative to the RIS noise field. We use ice and water layer reverberations generated by teleseismic P-waves to accurately estimate the sub-station thicknesses of these layers. We present observations consistent with the theoretically predicted transition of the water column from compressible to incompressible mechanics, relevant for vertically incident solid Earth waves with periods longer than 3 s. Finally, we observe symmetric-mode Lamb waves generated by teleseismic S-waves incident on the grounding zones. Despite their complexity, we conclude that teleseismic coda can be utilized for passive imaging of sub-shelf Earth structure, although longer deployments relative to conventional land-sited seismometers will be necessary to acquire adequate data.
    Description: This research was supported by NSF grants PLR-1142518, 1141916, 1142126, 1246151, 1246416 and OPP-1744852 and 1744856.
    Keywords: Glacier geophysics ; Ice shelves ; Seismology
    Repository Name: Woods Hole Open Access Server
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  • 37
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Coskun, O. K., Vuillemin, A., Schubotz, F., Klein, F., Sichel, S. E., Eisenreich, W., & Orsi, W. D. Quantifying the effects of hydrogen on carbon assimilation in a seafloor microbial community associated with ultramafic rocks. Isme Journal. (2021), https://doi.org/10.1038/s41396-021-01066-x.
    Description: Thermodynamic models predict that H2 is energetically favorable for seafloor microbial life, but how H2 affects anabolic processes in seafloor-associated communities is poorly understood. Here, we used quantitative 13C DNA stable isotope probing (qSIP) to quantify the effect of H2 on carbon assimilation by microbial taxa synthesizing 13C-labeled DNA that are associated with partially serpentinized peridotite rocks from the equatorial Mid-Atlantic Ridge. The rock-hosted seafloor community was an order of magnitude more diverse compared to the seawater community directly above the rocks. With added H2, peridotite-associated taxa increased assimilation of 13C-bicarbonate and 13C-acetate into 16S rRNA genes of operational taxonomic units by 146% (±29%) and 55% (±34%), respectively, which correlated with enrichment of H2-oxidizing NiFe-hydrogenases encoded in peridotite-associated metagenomes. The effect of H2 on anabolism was phylogenetically organized, with taxa affiliated with Atribacteria, Nitrospira, and Thaumarchaeota exhibiting the most significant increases in 13C-substrate assimilation in the presence of H2. In SIP incubations with added H2, an order of magnitude higher number of peridotite rock-associated taxa assimilated 13C-bicarbonate, 13C-acetate, and 13C-formate compared to taxa that were not associated with peridotites. Collectively, these findings indicate that the unique geochemical nature of the peridotite-hosted ecosystem has selected for H2-metabolizing, rock-associated taxa that can increase anabolism under high H2 concentrations. Because ultramafic rocks are widespread in slow-, and ultraslow-spreading oceanic lithosphere, continental margins, and subduction zones where H2 is formed in copious amounts, the link between H2 and carbon assimilation demonstrated here may be widespread within these geological settings.
    Description: This work was supported by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation)—Project-ID 364653263—TRR 235 to WDO and WE, and under Germany’s Excellence Strategy—EXC 2077-390741603. The work was also supported by the Dalio Explore Fund and LMU Mentoring Program. Open Access funding enabled and organized by Projekt DEAL.
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  • 38
    Publication Date: 2022-05-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Tison, J.-L., Maksym, T., Fraser, A. D., Corkill, M., Kimura, N., Nosaka, Y., Nomura, D., Vancoppenolle, M., Ackley, S., Stammerjohn, S., Wauthy, S., Van der Linden, F., Carnat, G., Sapart, C., de Jong, J., Fripiat, F., & Delille, B. Physical and biological properties of early winter Antarctic sea ice in the Ross Sea. Annals of Glaciology, 61(83), (2020): 241–259, https://doi.org/10.1017/aog.2020.43.
    Description: This work presents the results of physical and biological investigations at 27 biogeochemical stations of early winter sea ice in the Ross Sea during the 2017 PIPERS cruise. Only two similar cruises occurred in the past, in 1995 and 1998. The year 2017 was a specific year, in that ice growth in the Central Ross Sea was considerably delayed, compared to previous years. These conditions resulted in lower ice thicknesses and Chl-a burdens, as compared to those observed during the previous cruises. It also resulted in a different structure of the sympagic algal community, unusually dominated by Phaeocystis rather than diatoms. Compared to autumn-winter sea ice in the Weddell Sea (AWECS cruise), the 2017 Ross Sea pack ice displayed similar thickness distribution, but much lower snow cover and therefore nearly no flooding conditions. It is shown that contrasted dynamics of autumnal-winter sea-ice growth between the Weddell Sea and the Ross Sea impacted the development of the sympagic community. Mean/median ice Chl-a concentrations were 3–5 times lower at PIPERS, and the community status there appeared to be more mature (decaying?), based on Phaeopigments/Chl-a ratios. These contrasts are discussed in the light of temporal and spatial differences between the two cruises.
    Description: S. Stammerjohn was supported by the PIPERS and LTER Programs of the U.S. National Science Foundation, ANT-1341606 (S. Stammerjohn and J. Cassano, U Colorado) and ANT-0823101 (H. Ducklow, LDEO/Columbia University), respectively. Steve Ackley (UTSA) was supported by the PIPERS program of the U.S. National Science Foundation ANT-1341717 and by NASA Grant 80NSSC19M0194 to the Center for Adv. Meas. in Extreme Environments at UTSA.Ted Maksym (WHOI) was supported by the PIPERS program of the U.S. National Science Foundation ANT-1341513. This research was supported by the Belgian F.R.S-FNRS (project ISOGGAP and IODIne, contract T.0268.16 and J.0262.17, respectively). Fanny Van der Linden, Sarah Wauthy, Gauthier Carnat, Célia Sapart and Bruno Delille are PhD students, postdoctoral researchers and research associate, respectively, of the Belgian F.R.S.-FNRS. This work was also supported by the Australian Government's Cooperative Research Centre program through the Antarctic Climate & Ecosystems Cooperative Research Centre, and by the Australian Research Council's Special Research Initiative for Antarctic Gateway Partnership (Project ID SR140300001). Daiki Nomura was supported by grants from the Japan Society for the Promotion of Science (#17H04715) and the National Institute for Polar Research through Project Research KP-303 (ROBOTICA) and #28-14.
    Keywords: Antarctic glaciology ; biogeochemistry ; sea ice
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  • 39
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Castro, S. P., Borton, M. A., Regan, K., de Angelis, I. H., Wrighton, K. C., Teske, A. P., Strous, M., & Ruff, S. E. Degradation of biological macromolecules supports uncultured microbial populations in Guaymas Basin hydrothermal sediments. Isme Journal. (2021), https://doi.org/10.1038/s41396-021-01026-5.
    Description: Hydrothermal sediments contain large numbers of uncultured heterotrophic microbial lineages. Here, we amended Guaymas Basin sediments with proteins, polysaccharides, nucleic acids or lipids under different redox conditions and cultivated heterotrophic thermophiles with the genomic potential for macromolecule degradation. We reconstructed 20 metagenome-assembled genomes (MAGs) of uncultured lineages affiliating with known archaeal and bacterial phyla, including endospore-forming Bacilli and candidate phylum Marinisomatota. One Marinisomatota MAG had 35 different glycoside hydrolases often in multiple copies, seven extracellular CAZymes, six polysaccharide lyases, and multiple sugar transporters. This population has the potential to degrade a broad spectrum of polysaccharides including chitin, cellulose, pectin, alginate, chondroitin, and carrageenan. We also describe thermophiles affiliating with the genera Thermosyntropha, Thermovirga, and Kosmotoga with the capability to make a living on nucleic acids, lipids, or multiple macromolecule classes, respectively. Several populations seemed to lack extracellular enzyme machinery and thus likely scavenged oligo- or monomers (e.g., MAGs affiliating with Archaeoglobus) or metabolic products like hydrogen (e.g., MAGs affiliating with Thermodesulfobacterium or Desulforudaceae). The growth of methanogens or the production of methane was not observed in any condition, indicating that the tested macromolecules are not degraded into substrates for methanogenesis in hydrothermal sediments. We provide new insights into the niches, and genomes of microorganisms that actively degrade abundant necromass macromolecules under oxic, sulfate-reducing, and fermentative thermophilic conditions. These findings improve our understanding of the carbon flow across trophic levels and indicate how primary produced biomass sustains complex and productive ecosystems.
    Description: We are grateful to the captain and crew of the R/V Atlantis AT37-06 as well as the crew of the human occupied vehicle Alvin for their tireless support. Sampling at Guaymas Basin was supported by NSF (OCE-1357238).
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  • 40
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Bayer, B., Saito, M. A., McIlvin, M. R., Lucker, S., Moran, D. M., Lankiewicz, T. S., Dupont, C. L., & Santoro, A. E. (2020). Metabolic versatility of the nitrite-oxidizing bacterium Nitrospira marina and its proteomic response to oxygen-limited conditions. Isme Journal, doi:10.1038/s41396-020-00828-3.
    Description: The genus Nitrospira is the most widespread group of nitrite-oxidizing bacteria and thrives in diverse natural and engineered ecosystems. Nitrospira marina Nb-295T was isolated from the ocean over 30 years ago; however, its genome has not yet been analyzed. Here, we investigated the metabolic potential of N. marina based on its complete genome sequence and performed physiological experiments to test genome-derived hypotheses. Our data confirm that N. marina benefits from additions of undefined organic carbon substrates, has adaptations to resist oxidative, osmotic, and UV light-induced stress and low dissolved pCO2, and requires exogenous vitamin B12. In addition, N. marina is able to grow chemoorganotrophically on formate, and is thus not an obligate chemolithoautotroph. We further investigated the proteomic response of N. marina to low (∼5.6 µM) O2 concentrations. The abundance of a potentially more efficient CO2-fixing pyruvate:ferredoxin oxidoreductase (POR) complex and a high-affinity cbb3-type terminal oxidase increased under O2 limitation, suggesting a role in sustaining nitrite oxidation-driven autotrophy. This putatively more O2-sensitive POR complex might be protected from oxidative damage by Cu/Zn-binding superoxide dismutase, which also increased in abundance under low O2 conditions. Furthermore, the upregulation of proteins involved in alternative energy metabolisms, including Group 3b [NiFe] hydrogenase and formate dehydrogenase, indicate a high metabolic versatility to survive conditions unfavorable for aerobic nitrite oxidation. In summary, the genome and proteome of the first marine Nitrospira isolate identifies adaptations to life in the oxic ocean and provides insights into the metabolic diversity and niche differentiation of NOB in marine environments.
    Description: We thank John B. Waterbury and Frederica Valois for providing the culture of Nitrospira marina Nb-295T and for continued advice about cultivation. The N. marina genome was sequenced as part of US Department of Energy Joint Genome Institute Community Sequencing Project 1337 to CLD, AES, and MAS in collaboration with the user community. We thank Claus Pelikan for bioinformatic assistance. This research was supported by a Simons Foundation Early Career Investigator in Marine Microbiology and Evolution Award (345889) and US National Science Foundation (NSF) award OCE-1924512 to AES. Proteomics analysis was supported by NSF awards OCE-1924554 and OCE-1850719, and NIH award R01GM135709 to MAS. BB was supported by the Austrian Science Fund (FWF) Project Number: J4426-B (“The influence of nitrifiers on the oceanic carbon cycle”), SL by the Netherlands Organization for Scientific Research (NWO) grant 016.Vidi.189.050, and CLD by NSF award OCE-125999.
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  • 41
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ferrer-González, F. X., Widner, B., Holderman, N. R., Glushka, J., Edison, A. S., Kujawinski, E. B., & Moran, M. A. Resource partitioning of phytoplankton metabolites that support bacterial heterotrophy. ISME Journal, (2020), doi:10.1038/s41396-020-00811-y.
    Description: The communities of bacteria that assemble around marine microphytoplankton are predictably dominated by Rhodobacterales, Flavobacteriales, and families within the Gammaproteobacteria. Yet whether this consistent ecological pattern reflects the result of resource-based niche partitioning or resource competition requires better knowledge of the metabolites linking microbial autotrophs and heterotrophs in the surface ocean. We characterized molecules targeted for uptake by three heterotrophic bacteria individually co-cultured with a marine diatom using two strategies that vetted the exometabolite pool for biological relevance by means of bacterial activity assays: expression of diagnostic genes and net drawdown of exometabolites, the latter detected with mass spectrometry and nuclear magnetic resonance using novel sample preparation approaches. Of the more than 36 organic molecules with evidence of bacterial uptake, 53% contained nitrogen (including nucleosides and amino acids), 11% were organic sulfur compounds (including dihydroxypropanesulfonate and dimethysulfoniopropionate), and 28% were components of polysaccharides (including chrysolaminarin, chitin, and alginate). Overlap in phytoplankton-derived metabolite use by bacteria in the absence of competition was low, and only guanosine, proline, and N-acetyl-d-glucosamine were predicted to be used by all three. Exometabolite uptake pattern points to a key role for ecological resource partitioning in the assembly marine bacterial communities transforming recent photosynthate.
    Description: This work was supported by grants from the Gordon and Betty Moore Foundation (5503) and the National Science Foundation (IOS-1656311) to MAM, ASE, and EBK, and by the Simons Foundation grant 542391 to MAM within the Principles of Microbial Ecosystems (PriME) Collaborative.
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  • 42
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Roberts, Mark L., Elder, Kathryn L., Jenkins, William J., Gagnon, Alan R., Xu, Li, Hlavenka, Joshua D., & Longworth, Brett E. C-14 Blank Corrections for 25-100 mu G samples at the National Ocean Sciences AMS Laboratory. Radiocarbon, 61(5), (2019): 1403-1411, Doi: 10.1017/RDC.2019.74.
    Description: Replicate radiocarbon (14C) measurements of organic and inorganic control samples, with known Fraction Modern values in the range Fm = 0–1.5 and mass range 6 μg–2 mg carbon, are used to determine both the mass and radiocarbon content of the blank carbon introduced during sample processing and measurement in our laboratory. These data are used to model, separately for organic and inorganic samples, the blank contribution and subsequently “blank correct” measured unknowns in the mass range 25–100 μg. Data, formulas, and an assessment of the precision and accuracy of the blank correction are presented.
    Description: This work is supported by a Cooperative Agreement (OCE-1755125) with the U.S. National Science Foundation.
    Keywords: AMS ; AMS dating ; Blank corrections
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  • 43
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Baker, M. G., Aster, R. C., Anthony, R. E., Chaput, J., Wiens, D. A., Nyblade, A., Bromirski, P. D., Gerstoft, P., & Stephen, R. A. Seasonal and spatial variations in the ocean-coupled ambient wavefield of the Ross Ice Shelf. Journal of Glaciology, 65(254), (2019): 912-925, doi:10.1017/jog.2019.64.
    Description: The Ross Ice Shelf (RIS) is host to a broadband, multimode seismic wavefield that is excited in response to atmospheric, oceanic and solid Earth source processes. A 34-station broadband seismographic network installed on the RIS from late 2014 through early 2017 produced continuous vibrational observations of Earth's largest ice shelf at both floating and grounded locations. We characterize temporal and spatial variations in broadband ambient wavefield power, with a focus on period bands associated with primary (10–20 s) and secondary (5–10 s) microseism signals, and an oceanic source process near the ice front (0.4–4.0 s). Horizontal component signals on floating stations overwhelmingly reflect oceanic excitations year-round due to near-complete isolation from solid Earth shear waves. The spectrum at all periods is shown to be strongly modulated by the concentration of sea ice near the ice shelf front. Contiguous and extensive sea ice damps ocean wave coupling sufficiently so that wintertime background levels can approach or surpass those of land-sited stations in Antarctica.
    Description: This research was supported by NSF grants PLR-1142518, 1141916, 1142126, 1246151 and 1246416. JC was additionally supported by Yates funds in the Colorado State University Department of Mathematics. PDB also received support from the California Department of Parks and Recreation, Division of Boating and Waterways under contract 11-106-107. We thank Reinhard Flick and Patrick Shore for their support during field work, Tom Bolmer in locating stations and preparing maps, and the US Antarctic Program for logistical support. The seismic instruments were provided by the Incorporated Research Institutions for Seismology (IRIS) through the PASSCAL Instrument Center at New Mexico Tech. Data collected are available through the IRIS Data Management Center under RIS and DRIS network code XH. The PSD-PDFs presented in this study were processed with the IRIS Noise Tool Kit (Bahavar and others, 2013). The facilities of the IRIS Consortium are supported by the National Science Foundation under Cooperative Agreement EAR-1261681 and the DOE National Nuclear Security Administration. The authors appreciate the support of the University of Wisconsin-Madison Automatic Weather Station Program for the data set, data display and information; funded under NSF grant number ANT-1543305. The Ross Ice Shelf profiles were generated using the Antarctic Mapping Tools (Greene and others, 2017). Regional maps were generated with the Generic Mapping Tools (Wessel and Smith, 1998). Topography and bathymetry data for all maps in this study were sourced from the National Geophysical Data Center ETOPO1 Global Relief Model (doi:10.7289/V5C8276M). We thank two anonymous reviewers for suggestions on the scope and organization of this paper.
    Keywords: Antarctic glaciology ; Ice shelves ; Seismology
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  • 44
    Publication Date: 2022-10-21
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ackley, S. F., Stammerjohn, S., Maksym, T., Smith, M., Cassano, J., Guest, P., Tison, J., Delille, B., Loose, B., Sedwick, P., DePace, L., Roach, L., & Parno, J. Sea-ice production and air/ice/ocean/biogeochemistry interactions in the Ross Sea during the PIPERS 2017 autumn field campaign. Annals of Glaciology, 61(82), (2020): 181-195, doi:10.1017/aog.2020.31.
    Description: The Ross Sea is known for showing the greatest sea-ice increase, as observed globally, particularly from 1979 to 2015. However, corresponding changes in sea-ice thickness and production in the Ross Sea are not known, nor how these changes have impacted water masses, carbon fluxes, biogeochemical processes and availability of micronutrients. The PIPERS project sought to address these questions during an autumn ship campaign in 2017 and two spring airborne campaigns in 2016 and 2017. PIPERS used a multidisciplinary approach of manned and autonomous platforms to study the coupled air/ice/ocean/biogeochemical interactions during autumn and related those to spring conditions. Unexpectedly, the Ross Sea experienced record low sea ice in spring 2016 and autumn 2017. The delayed ice advance in 2017 contributed to (1) increased ice production and export in coastal polynyas, (2) thinner snow and ice cover in the central pack, (3) lower sea-ice Chl-a burdens and differences in sympagic communities, (4) sustained ocean heat flux delaying ice thickening and (5) a melting, anomalously southward ice edge persisting into winter. Despite these impacts, airborne observations in spring 2017 suggest that winter ice production over the continental shelf was likely not anomalous.
    Description: NSF supported PIPERS award numbers: ANT-1341717 (S.F. Ackley, UTSA); ANT-1341513 (E. Maksym, WHOI); ANT-1341606 (S. Stammerjohn and J. Cassano, U Colorado); ANT-1341725 (P. Guest, NPS). P. Sedwick was supported by NSF ANT-1543483. S.F. Ackley was also supported by NASA Grant 80NSSC19M0194 to the Center for Advanced Measurements in Extreme Environments at UTSA. S. Stammerjohn was also supported by the LTER Program under NFS award number ANT-0823101 (H. Ducklow, LDEO/Columbia University). Additional support was by the Belgian F.R.S-FNRS (project ISOGGAP and IODIne, contract T.0268.16 and J.0262.17, respectively). Bruno Delille is a research associate of the F.R.S.-FNRS. Terra-Sar-X quicklook imagery was coordinated by Kathrin Hoeppner at DLR, and Andy Archer (with the Antarctic Support Contractor) provided selected (cloud-free) MODIS scenes and daily maps of AMSR2 sea-ice concentration.
    Keywords: Atmosphere/ice/ocean interactions ; Ice/ocean interactions ; Sea ice ; Sea-ice growth and decay
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  • 45
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Zakem, E. J., Mahadevan, A., Lauderdale, J. M., & Follows, M. J. Stable aerobic and anaerobic coexistence in anoxic marine zones. ISME Journal, 14, (2019): 288–301, doi: 10.1038/s41396-019-0523-8.
    Description: Mechanistic description of the transition from aerobic to anaerobic metabolism is necessary for diagnostic and predictive modeling of fixed nitrogen loss in anoxic marine zones (AMZs). In a metabolic model where diverse oxygen- and nitrogen-cycling microbial metabolisms are described by underlying redox chemical reactions, we predict a transition from strictly aerobic to predominantly anaerobic regimes as the outcome of ecological interactions along an oxygen gradient, obviating the need for prescribed critical oxygen concentrations. Competing aerobic and anaerobic metabolisms can coexist in anoxic conditions whether these metabolisms represent obligate or facultative populations. In the coexistence regime, relative rates of aerobic and anaerobic activity are determined by the ratio of oxygen to electron donor supply. The model simulates key characteristics of AMZs, such as the accumulation of nitrite and the sustainability of anammox at higher oxygen concentrations than denitrification, and articulates how microbial biomass concentrations relate to associated water column transformation rates as a function of redox stoichiometry and energetics. Incorporating the metabolic model into an idealized two-dimensional ocean circulation results in a simulated AMZ, in which a secondary chlorophyll maximum emerges from oxygen-limited grazing, and where vertical mixing and dispersal in the oxycline also contribute to metabolic co-occurrence. The modeling approach is mechanistic yet computationally economical and suitable for global change applications.
    Description: We are grateful for the thorough and thoughtful comments of two anonymous reviewers. We also thank Andrew Babbin for helpful comments. EJZ was supported by the Simons Foundation (Postdoctoral Fellowship in Marine Microbial Ecology). AM was supported by the Office of Naval Research (ONR #N000-14-15-1-2555). JML was supported by U.S. National Science Foundation (NSF #OCE-1259388). MJF was supported by the Gordon and Betty Moore Foundation (GBMF #3778) and the Simons Foundation: the Simons Collaboration on Ocean Processes and Ecology (SCOPE #329108) and the Simons Collaboration on Computational Biogeochemical Modeling of Marine Ecosystems (CBIOMES #549931).
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  • 46
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ponnudurai, R., Heiden, S. E., Sayavedra, L., Hinzke, T., Kleiner, M., Hentschker, C., Felbeck, H., Sievert, S. M., Schlüter, R., Becher, D., Schweder, T., & Markert, S. Comparative proteomics of related symbiotic mussel species reveals high variability of host-symbiont interactions. ISME Journal, 14, (2019): 649–656, doi: 10.1038/s41396-019-0517-6.
    Description: Deep-sea Bathymodiolus mussels and their chemoautotrophic symbionts are well-studied representatives of mutualistic host–microbe associations. However, how host–symbiont interactions vary on the molecular level between related host and symbiont species remains unclear. Therefore, we compared the host and symbiont metaproteomes of Pacific B. thermophilus, hosting a thiotrophic symbiont, and Atlantic B. azoricus, containing two symbionts, a thiotroph and a methanotroph. We identified common strategies of metabolic support between hosts and symbionts, such as the oxidation of sulfide by the host, which provides a thiosulfate reservoir for the thiotrophic symbionts, and a cycling mechanism that could supply the host with symbiont-derived amino acids. However, expression levels of these processes differed substantially between both symbioses. Backed up by genomic comparisons, our results furthermore revealed an exceptionally large repertoire of attachment-related proteins in the B. thermophilus symbiont. These findings imply that host–microbe interactions can be quite variable, even between closely related systems.
    Description: Thanks to captain, crew, and pilots of the research vessels Atlantis (ROV Jason cruise AT26–10 in 2014) and Meteor (cruise M82–3 in 2010). We thank Jana Matulla, Sebastian Grund, and Annette Meuche for excellent technical assistance during sample preparation, MS measurements in the Orbitrap Classic, and TEM imaging preparation, respectively. We appreciate Nikolaus Leisch’s help with TEM image interpretation, Inna Sokolova’s advice on bivalve physiology, and Marie Zühlke’s support during manuscript revision. RP was supported by the EU-funded Marie Curie Initial Training Network ‘Symbiomics’ (project no. 264774) and by a fellowship of the Institute of Marine Biotechnology e.V. TH was supported by the German Research Foundation DFG (grant MA 6346/2–1 to SM). The Atlantis cruise was funded by a grant of the US National Science Foundation’s Dimensions of Biodiversity program to SMS (OCE-1136727).
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  • 47
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Miller, C. A., Holm, H. C., Horstmann, L., George, J. C., Fredricks, H. F., Van Mooy, B. A. S., & Apprill, A. Coordinated transformation of the gut microbiome and lipidome of bowhead whales provides novel insights into digestion. ISME Journal, 14, (2019): 688-701, doi: 10.1038/s41396-019-0549-y.
    Description: Whale digestion plays an integral role in many ocean ecosystems. By digesting enormous quantities of lipid-rich prey, whales support their energy intensive lifestyle, but also excrete nutrients important to ocean biogeochemical cycles. Nevertheless, whale digestion is poorly understood. Gastrointestinal microorganisms play a significant role in vertebrate digestion, but few studies have examined them in whales. To investigate digestion of lipids, and the potential contribution of microbes to lipid digestion in whales, we characterized lipid composition (lipidomes) and bacterial communities (microbiotas) in 126 digesta samples collected throughout the gastrointestinal tracts of 38 bowhead whales (Balaena mysticetus) harvested by Alaskan Eskimos. Lipidomes and microbiotas were strongly correlated throughout the gastrointestinal tract. Lipidomes and microbiotas were most variable in the small intestine and most similar in the large intestine, where microbiota richness was greatest. Our results suggest digestion of wax esters, the primary lipids in B. mysticetus prey representing more than 80% of total dietary lipids, occurred in the mid- to distal small intestine and was correlated with specific microorganisms. Because wax esters are difficult to digest by other marine vertebrates and constitute a large reservoir of carbon in the ocean, our results further elucidate the essential roles that whales and their gastrointestinal microbiotas play in the biogeochemical cycling of carbon and nutrients in high-latitude seas.
    Description: Devonshire Foundation (to CAM), Marine Mammal Center, Woods Hole Oceanographic Institution (WHOI; to CAM), WHOI Ocean Life Institute (to AA and CAM), Dalio Foundation’s Dalio Ocean Initiative (now ‘OceanX’) (to AA), National Science Foundation (OCE-1756254 and OPP-1543328 to BASVM). Samples were collected under Department of Commerce National Oceanic and Atmospheric Administration National Marine Fisheries Service permit numbers 17350-00, 17350-01, and 17350-02 to North Slope Borough Department of Wildlife Management.
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  • 48
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gazitua, M. C., Vik, D. R., Roux, S., Gregory, A. C., Bolduc, B., Widner, B., Mulholland, M. R., Hallam, S. J., Ulloa, O., & Sullivan, M. B. Potential virus-mediated nitrogen cycling in oxygen-depleted oceanic waters. Isme Journal, (2020), doi:10.1038/s41396-020-00825-6.
    Description: Viruses play an important role in the ecology and biogeochemistry of marine ecosystems. Beyond mortality and gene transfer, viruses can reprogram microbial metabolism during infection by expressing auxiliary metabolic genes (AMGs) involved in photosynthesis, central carbon metabolism, and nutrient cycling. While previous studies have focused on AMG diversity in the sunlit and dark ocean, less is known about the role of viruses in shaping metabolic networks along redox gradients associated with marine oxygen minimum zones (OMZs). Here, we analyzed relatively quantitative viral metagenomic datasets that profiled the oxygen gradient across Eastern Tropical South Pacific (ETSP) OMZ waters, assessing whether OMZ viruses might impact nitrogen (N) cycling via AMGs. Identified viral genomes encoded six N-cycle AMGs associated with denitrification, nitrification, assimilatory nitrate reduction, and nitrite transport. The majority of these AMGs (80%) were identified in T4-like Myoviridae phages, predicted to infect Cyanobacteria and Proteobacteria, or in unclassified archaeal viruses predicted to infect Thaumarchaeota. Four AMGs were exclusive to anoxic waters and had distributions that paralleled homologous microbial genes. Together, these findings suggest viruses modulate N-cycling processes within the ETSP OMZ and may contribute to nitrogen loss throughout the global oceans thus providing a baseline for their inclusion in the ecosystem and geochemical models.
    Description: We thank Sullivan Lab members and Heather Maughan for comments on the paper, Bess Ward for her contribution in the N-cycle context of our story, Kurt Hanselmann for his assistance in the calculations of the Gibbs-free energies, and the scientific party and crew of the R/V Atlantis (grant OCE-1356056 to MRM) for the sampling opportunity and support at sea. This work was funded in part by awards from the Agouron Institute to OU and MBS, a Gordon and Betty Moore Foundation Investigator Award (#3790) and NSF Biological Oceanography Awards (#1536989 and #1829831) to MBS, and the Millennium Science Initiative (grant ICN12_019-IMO) to OU. The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231.
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  • 49
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hughen, K. A., & Heaton, T. J. Updated Cariaco Basin C-14 calibration dataset from 0-60 cal kyr BP. Radiocarbon, 62(4), (2020): 1001-1043, doi:10.1017/RDC.2020.53.
    Description: We present new updates to the calendar and radiocarbon (14C) chronologies for the Cariaco Basin, Venezuela. Calendar ages were generated by tuning abrupt climate shifts in Cariaco Basin sediments to those in speleothems from Hulu Cave. After the original Cariaco-Hulu calendar age model was published, Hulu Cave δ18O records have been augmented with increased temporal resolution and a greater number of U/Th dates. These updated Hulu Cave records provide increased accuracy as well as precision in the final Cariaco calendar age model. The depth scale for the Ocean Drilling Program Site 1002D sediment core, the primary source of samples for 14C dating, has been corrected to account for missing sediment from a core break, eliminating age-depth anomalies that afflicted the earlier calendar age models. Individual 14C dates for the Cariaco Basin remain unchanged from previous papers, although detailed comparisons of the Cariaco calibration dataset to those from Hulu Cave and Lake Suigetsu suggest that the Cariaco marine reservoir age may have shifted systematically during the past. We describe these recent changes to the Cariaco datasets and provide the data in a comprehensive format that will facilitate use by the community.
    Description: K.A. Hughen was supported by funds from U.S. NSF grant #OCE-1657191, and by the Investment in Science Fund at WHOI. T.J. Heaton is supported by a Leverhulme Trust Fellowship RF-2019-140\9, “Improving the Measurement of Time Using Radiocarbon”.
    Keywords: Calibration ; Climate ; Radiocarbon
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  • 50
    Publication Date: 2022-10-20
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ackley, S. F., Perovich, D. K., Maksym, T., Weissling, B., & Xie, H. Surface flooding of Antarctic summer sea ice. Annals of Glaciology, 61(82), (2020): 117-126, doi:10.1017/aog.2020.22.
    Description: The surface flooding of Antarctic sea ice in summer covers 50% or more of the sea-ice area in the major summer ice packs, the western Weddell and the Bellingshausen-Amundsen Seas. Two CRREL ice mass-balance buoys were deployed on the Amundsen Sea pack in late December 2010 from the icebreaker Oden, bridging the summer period (January–February 2011). Temperature records from thermistors embedded vertically in the snow and ice showed progressive increases in the depth of the flooded layer (up to 0.3–0.35 m) on the ice cover during January and February. While the snow depth was relatively unchanged from accumulation (〈10 cm), ice thickness decreased by up to a meter from bottom melting during this period. Contemporaneous with the high bottom melting, under-ice water temperatures up to 1°C above the freezing point were found. The high temperature arises from solar heating of the upper mixed layer which can occur when ice concentration in the local area falls and lower albedo ocean water is exposed to radiative heating. The higher proportion of snow ice found in the Amundsen Sea pack ice therefore results from both winter snowfall and summer ice bottom melt found here that can lead to extensive surface flooding.
    Description: This work was supported by the National Science Foundation grant to UTSA, ANT-0839053-Sea Ice System in Antarctic Summer (S.F. Ackley, H. Xie and B. Weissling), and to WHOI, ANT-1341513 (T. Maksym), and by the NASA Center for Advanced Measurements in Extreme Environments or NASA-CAMEE at UTSA, NASA #80NSSC19M0194 (S.F. Ackley, H. Xie, B.Weissling).
    Keywords: Ice/ocean interactions ; Sea ice ; Sea-ice growth and decay ; Snow/ice surface processes
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  • 51
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Reimer, P. J., Austin, W. E. N., Bard, E., Bayliss, A., Blackwell, P. G., Ramsey, C. B., Butzin, M., Cheng, H., Edwards, R. L., Friedrich, M., Grootes, P. M., Guilderson, T. P., Hajdas, I., Heaton, T. J., Hogg, A. G., Hughen, K. A., Kromer, B., Manning, S. W., Muscheler, R., Palmer, J. G., Pearson, C., van der Plicht, J., Reimer, R. W., Richards, D. A., Scott, E. M., Southon, J. R., Turney, C. S. M., Wacker, L., Adolphi, F., Buentgen, U., Capano, M., Fahrni, S. M., Fogtmann-Schulz, A., Friedrich, R., Koehler, P., Kudsk, S., Miyake, F., Olsen, J., Reinig, F., Sakamoto, M., Sookdeo, A., & Talamo, S. The Intcal20 Northern Hemisphere radiocarbon age calibration curve (0-55 cal kBP). Radiocarbon, 62(4), (2020): 725-757, doi:10.1017/RDC.2020.41.
    Description: Radiocarbon (14C) ages cannot provide absolutely dated chronologies for archaeological or paleoenvironmental studies directly but must be converted to calendar age equivalents using a calibration curve compensating for fluctuations in atmospheric 14C concentration. Although calibration curves are constructed from independently dated archives, they invariably require revision as new data become available and our understanding of the Earth system improves. In this volume the international 14C calibration curves for both the Northern and Southern Hemispheres, as well as for the ocean surface layer, have been updated to include a wealth of new data and extended to 55,000 cal BP. Based on tree rings, IntCal20 now extends as a fully atmospheric record to ca. 13,900 cal BP. For the older part of the timescale, IntCal20 comprises statistically integrated evidence from floating tree-ring chronologies, lacustrine and marine sediments, speleothems, and corals. We utilized improved evaluation of the timescales and location variable 14C offsets from the atmosphere (reservoir age, dead carbon fraction) for each dataset. New statistical methods have refined the structure of the calibration curves while maintaining a robust treatment of uncertainties in the 14C ages, the calendar ages and other corrections. The inclusion of modeled marine reservoir ages derived from a three-dimensional ocean circulation model has allowed us to apply more appropriate reservoir corrections to the marine 14C data rather than the previous use of constant regional offsets from the atmosphere. Here we provide an overview of the new and revised datasets and the associated methods used for the construction of the IntCal20 curve and explore potential regional offsets for tree-ring data. We discuss the main differences with respect to the previous calibration curve, IntCal13, and some of the implications for archaeology and geosciences ranging from the recent past to the time of the extinction of the Neanderthals.
    Description: We would like to thank the National Natural Science Foundation of China grants NSFC 41888101 and NSFC 41731174, the 111 program of China (D19002), U.S. NSF Grant 1702816, and the Malcolm H. Wiener Foundation for support for research that contributed to the IntCal20 curve. The work on the Swiss and German YD trees was funded by the German Science foundation and the Swiss National Foundation (grant number: 200021L_157187). The operation in Aix-en-Provence is funded by the EQUIPEX ASTER-CEREGE, the Collège de France and the ANR project CARBOTRYDH (to EB). The work on the correlation of tree ring 14C with ice core 10Be was partially supported by the Swedish Research Council and the Knut and Alice Wallenberg foundation. M. Butzin was supported by the German Federal Ministry of Education and Research (BMBF) as Research for Sustainable Development (FONA; http://www.fona.de) through the PalMod project (grant number: 01LP1505B). S. Talamo and M. Friedrich are funded by the European Research Council under the European Union’s Horizon 2020 Research and Innovation Programme (grant agreement No. 803147-RESOLUTION, awarded to ST). CA. Turney would like to acknowledge support of the Australian Research Council (FL100100195 and DP170104665). P. Reimer and W. Austin acknowledge the support of the UKRI Natural Environment Research Council (Grant NE/M004619/1). T.J. Heaton is supported by a Leverhulme Trust Fellowship RF-2019-140\9. Other datasets and the IntCal20 database were created without external support through internal funding by the respective laboratories. We also would like to thank various institutions that provided funding or facilities for meetings.
    Keywords: Calibration curve ; Radiocarbon ; IntCal20
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  • 52
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Breusing, C., Mitchell, J., Delaney, J., Sylva, S. P., Seewald, J. S., Girguis, P. R., & Beinart, R. A. Physiological dynamics of chemosynthetic symbionts in hydrothermal vent snails. Isme Journal, (2020), doi:10.1038/s41396-020-0707-2.
    Description: Symbioses between invertebrate animals and chemosynthetic bacteria form the basis of hydrothermal vent ecosystems worldwide. In the Lau Basin, deep-sea vent snails of the genus Alviniconcha associate with either Gammaproteobacteria (A. kojimai, A. strummeri) or Campylobacteria (A. boucheti) that use sulfide and/or hydrogen as energy sources. While the A. boucheti host–symbiont combination (holobiont) dominates at vents with higher concentrations of sulfide and hydrogen, the A. kojimai and A. strummeri holobionts are more abundant at sites with lower concentrations of these reductants. We posit that adaptive differences in symbiont physiology and gene regulation might influence the observed niche partitioning between host taxa. To test this hypothesis, we used high-pressure respirometers to measure symbiont metabolic rates and examine changes in gene expression among holobionts exposed to in situ concentrations of hydrogen (H2: ~25 µM) or hydrogen sulfide (H2S: ~120 µM). The campylobacterial symbiont exhibited the lowest rate of H2S oxidation but the highest rate of H2 oxidation, with fewer transcriptional changes and less carbon fixation relative to the gammaproteobacterial symbionts under each experimental condition. These data reveal potential physiological adaptations among symbiont types, which may account for the observed net differences in metabolic activity and contribute to the observed niche segregation among holobionts.
    Description: We thank the Schmidt Ocean Institute, the crew of the R/V Falkor and the pilots of the ROV ROPOS for facilitating the sample collections and shipboard experiments, and the Broad Institute Microbial ‘Omics Core for preparing and sequencing the transcriptomic libraries. This material is based in part upon work supported by the National Science Foundation under Grant Numbers NSF OCE-1536653 (to PRG), OCE-1536331 (to RAB and JSS), OCE-1819530 and OCE-1736932 (to RAB).
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  • 53
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mara, P., Vik, D., Pachiadaki, M. G., Suter, E. A., Poulos, B., Taylor, G. T., Sullivan, M. B., & Edgcomb, V. P. Viral elements and their potential influence on microbial processes along the permanently stratified Cariaco Basin redoxcline. ISME Journal, (2020), doi:10.1038/s41396-020-00739-3.
    Description: Little is known about viruses in oxygen-deficient water columns (ODWCs). In surface ocean waters, viruses are known to act as gene vectors among susceptible hosts. Some of these genes may have metabolic functions and are thus termed auxiliary metabolic genes (AMGs). AMGs introduced to new hosts by viruses can enhance viral replication and/or potentially affect biogeochemical cycles by modulating key microbial pathways. Here we identify 748 viral populations that cluster into 94 genera along a vertical geochemical gradient in the Cariaco Basin, a permanently stratified and euxinic ocean basin. The viral communities in this ODWC appear to be relatively novel as 80 of these viral genera contained no reference viral sequences, likely due to the isolation and unique features of this system. We identify viral elements that encode AMGs implicated in distinctive processes, such as sulfur cycling, acetate fermentation, signal transduction, [Fe–S] formation, and N-glycosylation. These AMG-encoding viruses include two putative Mu-like viruses, and viral-like regions that may constitute degraded prophages that have been modified by transposable elements. Our results provide an insight into the ecological and biogeochemical impact of viruses oxygen-depleted and euxinic habitats.
    Description: This work was supported by the National Science Foundation grant OCE-1336082 to VPE, OCE-1335436 to GTT, OCE-1536989, a Moore Foundation Award (#3790) to MBS, and WHOI subaward A101259 to MP. The sequencing conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231.
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  • 54
    Publication Date: 2022-05-26
    Description: Author Posting. © Springer Nature , 2020. This article is posted here by permission of Springer Nature for personal use, not for redistribution. The definitive version was published in Nowacki, D. J., & Ganju, N. K. Sediment dynamics of a divergent bay-marsh complex. Estuaries and Coasts, (2020), doi:10.1007/s12237-020-00855-5.
    Description: Bay–marsh systems, composed of an embayment surrounded by fringing marsh incised by tidal channels, are widely distributed coastal environments. External sediment availability, marsh-edge erosion, and sea-level rise acting on such bay–marsh complexes may drive diverse sediment-flux regimes. These factors reinforce the ephemeral and dynamic nature of fringing marshes: material released by marsh-edge erosion becomes part of a bay–marsh exchange that fuels the geomorphic evolution of the coupled system. The dynamics of this sediment exchange determine the balance among seaward export, deposition on the embayment seabed, flux into tidal channels, and import to the marsh platform. In this work, we investigate the sediment dynamics of a transgressive bay–marsh complex and link them to larger-scale considerations of its geomorphic trajectory. Grand Bay, Alabama/Mississippi, is a shallow microtidal embayment surrounded by salt marshes with lateral erosion rates of up to 5 m year−1. We collected 6 months of oceanographic data at four moorings within Grand Bay and its tidal channels to assess hydrographic conditions and net sediment-flux patterns and augmented the observations with numerical modeling. The observations imply a divergent sedimentary system in which a majority of the suspended sediment is exported seaward, while a smaller fraction is imported landward via tidal channels, assisting in vertical marsh-plain accumulation, maintenance of channel and intertidal-flat morphologies, and landward transgression. These results describe a dynamic system that is responsive to episodic atmospheric forcing in the absence of a strong tidal signal and the presence of severe lateral marsh loss.
    Description: We thank the staff of the Grand Bay NERR for their role in facilitating fieldwork within Grand Bay. Jonathan Pitchford, also of the Grand Bay NERR, provided the SET data. Giulio Mariotti and an anonymous reviewer are acknowledged for their helpful comments.
    Keywords: Salt marsh ; Geomorphic trajectory ; Sediment flux
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  • 55
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Heaton, T. J., Koehler, P., Butzin, M., Bard, E., Reimer, R. W., Austin, W. E. N., Ramsey, C. B., Grootes, P. M., Hughen, K. A., Kromer, B., Reimer, P. J., Adkins, J., Burke, A., Cook, M. S., Olsen, J., & Skinner, L. C. Marine20-the marine radiocarbon age calibration curve (0-55,000 cal BP). Radiocarbon, 62(4), (2020): 779-820, doi:10.1017/RDC.2020.68.
    Description: The concentration of radiocarbon (14C) differs between ocean and atmosphere. Radiocarbon determinations from samples which obtained their 14C in the marine environment therefore need a marine-specific calibration curve and cannot be calibrated directly against the atmospheric-based IntCal20 curve. This paper presents Marine20, an update to the internationally agreed marine radiocarbon age calibration curve that provides a non-polar global-average marine record of radiocarbon from 0–55 cal kBP and serves as a baseline for regional oceanic variation. Marine20 is intended for calibration of marine radiocarbon samples from non-polar regions; it is not suitable for calibration in polar regions where variability in sea ice extent, ocean upwelling and air-sea gas exchange may have caused larger changes to concentrations of marine radiocarbon. The Marine20 curve is based upon 500 simulations with an ocean/atmosphere/biosphere box-model of the global carbon cycle that has been forced by posterior realizations of our Northern Hemispheric atmospheric IntCal20 14C curve and reconstructed changes in CO2 obtained from ice core data. These forcings enable us to incorporate carbon cycle dynamics and temporal changes in the atmospheric 14C level. The box-model simulations of the global-average marine radiocarbon reservoir age are similar to those of a more complex three-dimensional ocean general circulation model. However, simplicity and speed of the box model allow us to use a Monte Carlo approach to rigorously propagate the uncertainty in both the historic concentration of atmospheric 14C and other key parameters of the carbon cycle through to our final Marine20 calibration curve. This robust propagation of uncertainty is fundamental to providing reliable precision for the radiocarbon age calibration of marine based samples. We make a first step towards deconvolving the contributions of different processes to the total uncertainty; discuss the main differences of Marine20 from the previous age calibration curve Marine13; and identify the limitations of our approach together with key areas for further work. The updated values for ΔR, the regional marine radiocarbon reservoir age corrections required to calibrate against Marine20, can be found at the data base http://calib.org/marine/.
    Description: We would like to thank Jeremy Oakley and Richard Bintanja for informative discussions during the development of this work. T.J. Heaton is supported by a Leverhulme Trust Fellowship RF-2019-140\9, “Improving the Measurement of Time Using Radiocarbon”. M Butzin is supported by the German Federal Ministry of Education and Research (BMBF), as Research for Sustainability initiative (FONA); www.fona.de through the PalMod project (grant numbers: 01LP1505B, 01LP1919A). E. Bard is supported by EQUIPEX ASTER-CEREGE and ANR CARBOTRYDH. Meetings of the IntCal Marine Focus group have been supported by Collège de France. Data are available on the PANGAEA database at doi:10.159/ANGAEA.914500.
    Keywords: Bayesian modeling ; calibration ; carbon cycle ; computer model ; marine environment
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  • 56
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    Physics of Plasmas 1 (1994), S. 2441-2447 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: The formation of visible layered structures that develop at the anodic zone of a constricted glow discharge is reported. They are composed of several tridimensional double layers with axial symmetry enclosing different plasma coronas. The dependence of the number and size of plasma shells with the conditions of the discharge is discussed, as well as the nature of these double layers. The experimental results evidence the effect of the distribution of neutrals in the volume of the discharge for the development of double layers.
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    Physics of Plasmas 1 (1994), S. 2480-2487 
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    Topics: Physics
    Notes: The evolution of the return current induced by a charged particle beam in a magnetized plasma is studied. The beam current is perpendicular to the background magnetic field. The return current is shown to depart from the beam along the background magnetic field with a whistler rather than a diffusion or an Alfvén velocity. In a plasma bounded by two conductors the return current oscillates with the whistler period. Analytical expressions for the evolution of the magnetic field and of the plasma return current are derived for a beam with a finite width and with various rise time dependences. When the whistler time is shorter than the rise time of the beam current, the plasma return current does not grow beyond the whistler time.
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  • 58
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    [S.l.] : American Institute of Physics (AIP)
    Physics of Plasmas 1 (1994), S. 2525-2530 
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    Topics: Physics
    Notes: The time evolution of a nonideal magnetohydrodynamic (MHD) plasma is investigated. An approach for the reduction of the nonlinear vector MHD equations for a current carrying plasma with a strong longitudinal external magnetic field to a set of scalar partial differential equations is supposed. Analytical time-dependent solutions of the nonlinear resistive and dissipative MHD equations for a cylindrical plasma column are presented. It is shown that the internal magnetic field and the velocity have different damping times and that in the asymptotic limit t→∞ the plasma slowly relaxes toward the static equilibrium state. Analytical reduced MHD solutions describing slowly evolving states in tokamaks are found.
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  • 59
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    Physics of Plasmas 1 (1994), S. 2566-2573 
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    Topics: Physics
    Notes: The kinetic equation for a plasma in a stochastic electromagnetic helical field is constructed and studied. The kinetic equation contains an additional term, proportional to the helicity. The evolution of the main moments of the distribution function is considered. A solution describing the evolution of the distribution function for arbitrary initial conditions is found and possible consequences of presence of the helicity term are discussed. A model example is considered when a single-momentum electron beam with an inhomogeneous velocity profile creates a new particle flow in the transverse direction, so that the resulting flow also possesses the helicity.
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  • 60
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    Physics of Plasmas 1 (1994), S. 2603-2613 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: A linearized discretization approach is proposed for the numerical investigation of the gyrokinetic equation describing the dynamics of a strongly rotating plasma in a toroidally axisymmetric configuration. The discretization scheme allows the numerical evaluation of the neoclassical transport matrix in terms of a suitably discretized distribution function. A basic feature of the discretization scheme here developed is that it permits the introduction of Monte Carlo collision operators to advance in time the gyrokinetic state of a suitable set of test particles. Such operators, which apply to general non-normal gyrokinetic coordinates, are constructed in such a way as to conserve exactly the collisional invariants. A fundamental consequence is that the neoclassical transport coefficients determined in this way fulfill exactly both Onsager's symmetry relations and the condition of strict ambipolarity for the particle-flux transport coefficients. Such properties are proven to be satisfied independently of the number of test particles used in the discretization scheme.
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  • 61
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    Physics of Plasmas 1 (1994), S. 2890-2900 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: Experimental evidence suggests that unabsorbed wave energy in ion cyclotron range of frequency fast wave (FW) experiments can result in deleterious edge interactions. A model describing the formation of far field sheaths due to FW interaction with material surfaces is presented. Near conductors that do not conform to flux surfaces, an incoming FW causes the generation of a slow wave (SW) component. The E(parallel) of the SW drives an RF sheath, in a manner similar to what has been previously discussed for antenna (near field) sheaths. To assess the importance of the proposed mechanism, a heuristic scaling model of the resultant sheath voltage V is developed and compared with a numerical code. The model illustrates the important dependencies of V on the single pass absorption, edge density, FW frequency, FW cutoff location, and limiter/wall geometries and yields qualitative agreement with the experimental observations.
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  • 62
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    Physics of Plasmas 1 (1994), S. 3003-3007 
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    Topics: Physics
    Notes: Generalized fluid models have become increasingly popular for incorporating kinetic effects in hydrodynamic studies of laser–plasma interactions. However, their transport coefficients depend on the source of the thermal perturbation, which leads to difficulties, since both inverse-bremsstrahlung heating and pdV work drive these perturbations. Treating these sources separately using a model with two energy equations is proposed. Tested against electron Fokker–Planck simulations, this model reproduces both Landau damping of ion-sound waves and the correct response to inverse bremsstrahlung.
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  • 63
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    Physics of Plasmas 1 (1994), S. 3053-3058 
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    Topics: Physics
    Notes: The ideal initial value problem for the neutral sheet is considered, with the emphasis on fieldwise-independent, infinitesimal velocity disturbances. It is shown analytically that cross-field velocity perturbations persist, and that they also set up fieldwise magnetic disturbances that grow algebraically in time. When these disturbances attain finite amplitude they should distort the neutral sheet configuration, and hence they could provide an alternative route by which magnetic reconnection can become turbulent. Some supporting numerical simulations, performed at large Lundquist numbers, are then described. In an Appendix the analysis is extended to include fieldwise-dependent disturbances.
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  • 64
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    Physics of Plasmas 1 (1994), S. 3093-3099 
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    Topics: Physics
    Notes: A generalized linear theory that allows for mismatched boundary conditions was used in determining the starting oscillation conditions for gyrotron backward wave oscillators (gyro-BWO). The results reveal that the gyro-BWO interaction is normally caused by the interference between a constant-amplitude backward wave and a decaying backward wave. The latter becomes a forward-growing wave if the operating frequency is close to the waveguide cutoff frequency. The starting oscillation length for a reflection-type gyro-BWO is shorter than that of a matched-type gyro-BWO. The mismatch has more of an effect upon the onset of a gyro-BWO, which is operated close to the cutoff frequency.
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  • 65
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    Physics of Plasmas 1 (1994), S. 3135-3137 
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    Topics: Physics
    Notes: The stability of magnetic island producing perturbations due to fluctuations in the bootstrap current in stellarator configuration is examined. The stability criterion depends on the sign of the derivative of the rotational transform, the pressure gradient, and the direction of the equilibrium bootstrap current, which is determined by the structure of ||B||. It is found that quasihelically symmetric stellarator configurations with p'/ι'〈0 are unstable to the formation of bootstrap current-driven magnetic islands. The stability of conventional stellarator configurations depends upon the field structure.
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  • 66
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    Physics of Plasmas 1 (1994), S. 2762-2767 
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    Topics: Physics
    Notes: The propagation of electromagnetic and Langmuir waves in multicomponent unmagnetized plasmas with dust particles is investigated. The effect of capture of plasma electrons and ions by the dust particles is taken into account. The recent theory proposed by Tsytovich and Havnes [Comments Plasma Phys. Controlled Fusion 15, 267 (1993)] to describe the kinetics of the capture process, as well as its perturbations, is further developed. The new wave damping due to this effect is calculated.
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  • 67
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    [S.l.] : American Institute of Physics (AIP)
    Physics of Plasmas 1 (1994), S. 2798-2800 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: One-dimensional analysis of momentum transport equations of electrons, plasma ions, and one impurity charge state shows that both the nonambipolar current and the thermal forces can influence the coupling of impurity and plasma ions. The solution indicates that, in general, a steady-state drift can exist between the impurity and plasma ions. In cases where thermal forces are negligible, the impurity ions are strongly coupled to the plasma ions only if the transport is ambipolar. In this case the plasma ions and the impurities move as a single fluid. However, if nonambipolar currents are present, a steady-state drift is possible between the plasma ions and the impurity ions even if thermal forces are neglected. In this case, the imbalance due to the electron frictional force (∼Z2) acting on the impurity charge state and the plasma ions is balanced by the impurity and plasma ion friction.
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  • 68
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    Physics of Plasmas 1 (1994), S. 2741-2747 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: A possible mechanism is suggested for direct ion heating in reversed-field pinches (RFP). The ion temperature gradient mode induces collisionless ion perpendicular viscosity which damps the velocity fluctuations associated with resistive magnetohydrodynamic (MHD) mode activity. It is found that the growth rate of the ηi instability is much larger than that in a tokamak, because the effects of both bad magnetic curvature and negative compressibility are enhanced in a RFP configuration. The anomalous perpendicular viscosity coefficient is estimated from the mixing length argument and the corresponding ion heating power due to viscous dissipation is found sufficient to balance the ion conductive losses.
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  • 69
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    Physics of Plasmas 1 (1994), S. 2777-2784 
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    Topics: Physics
    Notes: The stellatron accelerator of the University of California at Irvine (UCI) [Phys. Fluids B 2, 3149 (1990)] was modified to accommodate beam extraction. The magnetic field coils were reconstructed to adapt an extraction port. A fiberglass–graphite–epoxy chamber replaced the glass chamber that cracked frequently during the previous experiment. Improvement in the magnetic field configuration has significantly reduced the current loss during acceleration. A 1.1 kA, 12 MeV electron beam was generated by initially forming a 1.2 kA beam with plasma start-up. The beam radius was 5–7 mm. Beam extraction was performed with two auxiliary pulsed current coils and up to 15% of the beam was extracted from the chamber. The extraction process was analyzed by computational orbit simulations.
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  • 70
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    Physics of Plasmas 1 (1994), S. 2105-2109 
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    Topics: Physics
    Notes: Three new approximants to the solution of the one-dimensional nonlinear Debye screening potential have been obtained. The ions and electrons are in steady-state equilibrium situations with different temperatures. Therefore, the potential satisfies the nonlinear Poisson equation with a Boltzmann factor for both the electronic and ion densities. To obtain the approximants, the original equation has been written in a suitable compact way. The variables have been transformed in such a way that the two-point quasifractional approximation technique can be applied. The simplest approximant is almost as simple as the usual linear one, but it has an additional coefficient and it is more accurate. The other two approximants, more accurate than the simplest one, are exact for the limit of equal temperatures. All the approximants obtained here give better accuracy than the third-order approximation obtained previously by Clemente and Martín [J. Phys. Soc. Jpn. 61, 34 (1992)].
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  • 71
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    Physics of Plasmas 1 (1994), S. 2125-2134 
    ISSN: 1089-7674
    Source: AIP Digital Archive
    Topics: Physics
    Notes: A plasma vortex street configuration can evolve when two velocity and one magnetic shear layer interact strongly. A study of the interaction between two- and three-dimensional plasma modes and a mean sheared magnetic field is undertaken using a three-dimensional magnetohydrodynamic spectral Galerkin computation. The initial state is a simple magnetic shear in a plane perpendicular to the plasma velocity shear plane. In a very weak magnetic field, secondary instabilities (three-dimensional modes), expressed by the kinking of vortex tubes, lead to plasma flow along and around the axes of the vortex cores, creating characteristic patterns of kinetic helicity and linkages between vortex filaments. Three-dimensionality leads to the vortex breakdown process. A strong sheared magnetic field inhibits the kinking of vortex tubes, maintaining two-dimensionality. This inhibits vortex breakdown over long dynamical times. There is an anticorrelation in time between linkage indices of the vortex filament (related to kinetic helicity), suggesting that the ellipticity axes of the vortex cores along the street undergo a global inphase evolution. This anticorrelation has a dynamical interpretation. It extends to a relaxing plasma in the Navier–Stokes flow notion that helical regions of opposite helicities interact and screen each other off so that the global helicity remains bounded.
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  • 72
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    [S.l.] : American Institute of Physics (AIP)
    Physics of Plasmas 1 (1994), S. 2200-2206 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: In the framework of the analytical study of magnetohydrodynamic (MHD) equilibria with flow and nonuniform density, a general family of well-behaved exact solutions of the generalized Grad–Shafranov equation and of the whole set of time-independent MHD equations completed by the nonbarotropic ideal gas equation of state is obtained, both in helical and axial symmetry. The helical equilibrium solutions are suggested to be relevant to describe the helical morphology of some astrophysical jets.
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  • 73
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    [S.l.] : American Institute of Physics (AIP)
    Physics of Plasmas 1 (1994), S. 2220-2228 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: Turbulent momentum transport given by the Reynolds stress is considered as a candidate for explaining the production and sustainment of the mean shear flow in the high confinement "(H)'' mode. The fluctuation mechanism for the shear flow generation and transport reduction in the three-dimensional (3-D) multihelicity system is given. The profiles of the Reynolds stress, shear flow, and thermal flux in the 3-D case are compared with those in the two-dimensional (2-D) case. The Beklemishev–Horton theory for the anomalous transport which multiplies the 2-D transport by the density of distinct mode rational surfaces is found to overestimate the observed flux due to the disappearance of a subset of modes on certain rational surfaces. The mixing-length theory, in which the anomalous transport is independent of the density of mode rational surfaces, underestimates the thermal flux.
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  • 74
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    Physics of Plasmas 1 (1994), S. 2350-2358 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: Based on both the coupled wave theory and the fluid dynamics, a three-dimensional theory of a dense, thick-beam free electron laser is presented which includes combined effects of the electron beam thickness, the radial gradients of the wiggler field, the self-fields of the beam, and the electrostatic field self-consistently. The noncoupling dispersion relations of the scattered wave and the electron plasma wave are, respectively, derived to decide their intersections in the ω-k plane, which tell the resonant conditions of the free electron laser. The coupling dispersion equation is then derived, which can be used to investigate the growth rate and the combined effects on the growth rate of the laser to detailed applications. From the analytic dispersion equation, it is found that the growth rate is proportional to the square root of the product of the beam density and the square of the perpendicular velocity amplitude.
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  • 75
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    Physics of Plasmas 1 (1994), S. 2383-2397 
    ISSN: 1089-7674
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    Topics: Physics
    Notes: Momentum and heat transfer associated with a translating liquid droplet with/without mass efflux from the droplet surface in a quiescent argon thermal plasma environment is studied. A Chebyshev–Legendre spectral method with a fractional time stepping method is expanded to treat the compressible nature of the thermal plasma flow as well as the internal droplet incompressible flow. Steady-state solutions for the case of plasma flow over a constant temperature solid sphere and incompressible flow over a droplet without mass efflux from the droplet are calculated and compared with previously published results. The interfacial phenomena are studied with interfacial physical properties. Transient solutions with droplet internal motion and convective heat transfer with/without mass efflux from the sphere surface are presented. Results indicate that uniform droplet internal temperature is established more quickly than that of a solid sphere in the plasma environment for no mass efflux case. Also, a symmetric interfacial velocity distribution develops along the droplet interface as Reynolds number increases. In case of mass efflux from the sphere, results show that the drag force and heat transfer rate are reduced in the presence of radial mass efflux at the droplet surface.
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  • 76
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    [S.l.] : American Institute of Physics (AIP)
    Physics of Plasmas 1 (1994), S. 1768-1770 
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    Topics: Physics
    Notes: The effect of a resistive wall on the stability of a magnetohydrodynamic equilibrium with flow is examined. Gyroscopically stabilized negative energy modes are shown to become unstable in the presence of a resistive wall. An estimate for the growth rate is obtained. The effect of this destabilization on the limits on the safety factor and the plasma beta for a rigidly rotating plasma column are studied.
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  • 77
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    Physics of Plasmas 1 (1994), S. 1783-1791 
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    Topics: Physics
    Notes: Results of a study of the magnetic compression of one-dimensional energetic ion layers in the presence of conductive background plasmas in cylindrical geometry are presented. For this, an updated hybrid (particle-ion and fluid-electron) computer model has been used. The first observation is that when the magnetic field at the wall is ramped quickly relative to the radial Alfvén wave transit time across the cylinder then a magnetic probe on axis would measure a larger field perturbation. When the wall field is ramped slowly, the layer energy increases proportionally with the external magnetic-field strength and, as expected, the layer self-field on axis does not change relative to external field. A study is also made of the effects of transient fluctuations on the layer energy when the field is ramped quickly. When the ramped field strength is small compared with the ambient field (the linear case), the average layer kinetic energy gained is not substantially different from the case where ramping is slow; however, the fluctuating energy is more than twice the average change. The interesting observation is made that the thermal spread in particle energy for a layer is not necessarily related to the strength of the self-field. This is explained in terms of the single particle motion in a self-potential well, and is different from the expected result for a two-dimensional ring.
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  • 78
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    Physics of Plasmas 1 (1994), S. 1827-1831 
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    Topics: Physics
    Notes: The confinement of charged particles by linear, time-dependent fields with arbitrary pulse shape is studied. It is assumed that the trapped particles are perturbed by collisions with a neutral background gas. The spatial dispersion and energy of the trapped particles are determined using an asymptotic expansion based on a singular perturbation approach in terms of the momentum exchanged during collisions. Parametric instabilities, which result in the destruction of the confinement, are identified for different pulse shapes.
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  • 79
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    Physics of Plasmas 1 (1994), S. 1841-1849 
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    Topics: Physics
    Notes: The structure of the self-consistent electromagnetic fields, E, B, and one-particle distribution functions, fs, of a stationary dissipative unbounded S-species plasma, which satisfy a system of Maxwell–Vlasov–Fokker–Planck–Boltzmann equations with velocity-independent (effective) dissipation coefficients and applied constant electric field E, is studied. It is proven that when the plasma is invariant along the direction of E, then (a) the fs are given by S drifting Maxwell–Boltzmann distributions, with densities satisfying self-consistent Poisson–Boltzmann equations of the type first considered by Bennett for S=2; (b) all smooth radial current profiles with normalized particle densities satisfy a generalized Bennett relation; (c) Bennett's current profile is the only fully conformally invariant one; (d) there exist other radial solutions with profiles different from Bennett's.
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  • 80
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    Physics of Plasmas 1 (1994), S. 1868-1870 
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    Topics: Physics
    Notes: Fully nonlinear ion acoustic solitary waves propagating obliquely to the external magnetic field in an impurity-containing magnetized plasma are investigated.
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  • 81
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    Physics of Plasmas 1 (1994), S. 2154-2162 
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    Topics: Physics
    Notes: Large amplitude Langmuir and ion-acoustic waves in a weakly relativistic two-fluid plasma are analyzed by the pseudopotential method. The existence conditions for relativistic nonlinear Langmuir waves depend on the relativistic effect, the particular energy, and the ion mass to electron mass ratio. The allowable range of the normalized potential depends on the relativistic effect. It is shown that the Mach number has the significant effect for the formation of relativistic nonlinear ion-acoustic waves rather than the ratio of the ion-acoustic velocity to the velocity of light. The allowable range of the normalized potential depends on the Mach number. The present investigation predicts new findings of relativistic nonlinear Langmuir and ion-acoustic waves in plasmas in which high-speed electrons and ions coexist.
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  • 82
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    Physics of Plasmas 1 (1994), S. 2163-2171 
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    Notes: Whistler wave excitation in a magnetized laboratory plasma by a density modulated electron beam is studied for frequency modulation below, but in the range of, the electron gyrofrequency. When the beam velocity differs from the phase velocity of the whistler at the frequency modulation of the beam, a whistler wave, and, by Cerenkov emission, a beam wave at the same frequency are excited as single poles. When both velocities are equal, a resonance occurs leading to a maximum in the emission of whistler waves. The experiment performed in a magnetized plasma (np≈1011 cm−3, Te≈0.2 eV, B≈100 G) with a modulated electron beam (nb≈109 cm−3, Eb≈300 eV) is in agreement with a simple model which predicts the characteristics of the excited waves.
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  • 83
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    Physics of Plasmas 1 (1994), S. 2189-2199 
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    Notes: The microstability of electrostatic waves in the periphery of a Z pinch is formulated and resolved for a new class of Vlasov meta-equilibria admitting self-similar solutions in the electron gyrokinetic limit. These equilibria are subject to strong radial motions, and a mild deviation from charge neutrality arises to maintain ion acceleration close to that of the magnetized electrons. A unique class of profiles in density, axial current, temperature, and drift speed defines these equilibria. They are characterized by (i) the interior pinch current, (ii) the interior number density, (iii) the parallel and perpendicular temperatures, (iv) the exterior axial electric field value at the initial time, and (v) the radial ion acceleration relative to that of the electrons. Unstable ion sound waves arise in this medium by coupling radial and axial free energy to azimuthal longitudinal oscillations. The waves grow only for a limited range of radial or axial E×bˆ/B drift speeds and electron temperatures. The growth rate, which can be as large as 0.115ωpi, is found to scale proportional to plasma frequency over the density range from 1012 to 1018 ions cm−3.
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  • 84
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    Physics of Plasmas 1 (1994), S. 2229-2244 
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    Notes: The method of Hammett and Perkins [Phys. Rev. Lett. 64, 3019 (1990)] to model Landau damping has been recently applied to the moments of the gyrokinetic equation with curvature drift by Waltz, Dominguez, and Hammett [Phys. Fluids B 4, 3138 (1992)]. The higher moments are truncated in terms of the lower moments (density, parallel velocity, and parallel and perpendicular pressure) by modeling the deviation from a perturbed Maxwellian to fit the kinetic response function at all values of the kinetic parameters: k(parallel)vth/ω, b=(k⊥ρ)2/2, and ωD/ω. Here the resulting gyro-Landau fluid equations are applied to the simulation of ion temperature gradient (ITG) mode turbulence in toroidal geometry using a novel three-dimensional (3-D) nonlinear ballooning mode representation. The representation is a Fourier transform of a field line following basis (ky',kx',z') with periodicity in toroidal and poloidal angles. Particular emphasis is given to the role of nonlinearly generated n=0 (ky' = 0, kx' ≠ 0) "radial modes'' in stabilizing the transport from the finite-n ITG ballooning modes. Detailing the parametric dependence of toroidal ITG turbulence is a key result.
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  • 85
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    Physics of Plasmas 1 (1994), S. 2291-2296 
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    Topics: Physics
    Notes: In the Saskatchewan Torus-Modified (STOR-M) tokamak [Phys. Fluids B 4, 3277 (1992)], application of a negative bias results in large negative radial electric field, Er, at the plasma edge, reduced plasma toroidal rotation velocity, and a large poloidal rotation in the electron diamagnetic drift direction. Conversely, a positive bias leads to a relatively small negative Er at the plasma edge, a positive Er in the scrape-off layer, increased toroidal rotation, and an increased poloidal rotation speed in the ion diamagnetic drift direction. Increases in edge plasma density and steepening of its radial profile have also been observed for both polarities.
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  • 86
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    Notes: Space–time-resolved Thomson scattering was used to characterize the electron and ion temperatures in laser produced plasmas of various atomic numbers (Z=6, 13, 32, 73, 92). A Nd:glass laser with intensity between 1013 and 5×1014 W/cm2 was used to produce plasmas of relevance to laser fusion and x-ray laser studies. A comparison of the electron temperature and density deduced from Thomson scattering, x-ray spectroscopy, and lasnex hydrocode simulations is presented.
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  • 87
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    Physics of Plasmas 1 (1994), S. 2359-2370 
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    Topics: Physics
    Notes: The stability of Pierce-like plasma diodes is investigated for arbitrary ion injection velocities. A recently developed integral formalism that accounts for ion dynamical effects is applied to derive a generalized dispersion relation for electrostatic perturbations. Its evaluation exhibits several new features, such as the appearance of growing oscillatory modes, which become Pierce–Buneman modes in the limit of initially resting ions, and of weakly damped oscillatory modes, which become undamped ion plasma oscillations in this limit. The stability of this bounded plasma system is shown to be controlled by the new control parameter αˆ=α(1+μˆ)1/2, where α is the Pierce parameter and μˆ≡mev2e0/miv2i0 the ratio of electron and ion kinetic energy at the emitter.
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  • 88
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    Physics of Plasmas 1 (1994), S. 2401-2403 
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    Topics: Physics
    Notes: Coherent structures rotating at the angular velocity ω in a two-dimensional pure electron plasma confined inside a conducting grounded cylinder are considered. These structures are described by a streamfunction ψ, obeying a nonlinear boundary value problem. It is shown, in particular, that (i) this problem has a minimal cylindrically symmetric solution if it has a solution at all. (ii) For a nonsymmetric solution, 2ω is necessarily comprised between the minimum and maximum values taken by the local diocotron frequency in the cylinder. (iii) Bifurcation of a symmetric radially decreasing solution to a nonsymmetric one can occur only when 2ω is equal to the mean diocotron frequency.
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  • 89
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    Physics of Plasmas 1 (1994), S. 1774-1776 
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    Topics: Physics
    Notes: An experimental study of the rapid step-switching of the frequency of a submillimeter wave gyrotron is described. Modulation of the energy of the electron beam in turn modulates the electron mass and hence the cyclotron resonance frequency fc or its second harmonic 2fc, while the magnetic field B0 remains the same. This opens up the possibility of switching from one cavity mode to another. The first experimental results for frequency switching between two fundamental modes and between a fundamental and a second harmonic mode are demonstrated.
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  • 90
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    Physics of Plasmas 1 (1994), S. 1817-1820 
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    Topics: Physics
    Notes: For a particle moving in the electric field of many, randomly phase waves, numerical measurements show that the Lyapunov exponent (1) asymptotes to a value of 0.4 times the resonance broadening frequency, in contrast with previous calculations, and (2) has a peak at intermediate values of the overlap parameter. This latter result indicates that the previously observed enhancement of the diffusion coefficient is not due to coherence effects near stable regions of phase space. These results provide further evidence that the standard model is an inadequate description of the turbulent electric field.
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  • 91
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    Physics of Plasmas 1 (1994), S. 1168-1176 
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    Notes: Parallel viscosity in the banana regime in a poloidally (E×B) rotating tokamak plasma is calculated to include the effects of orbit squeezing and to allow the poloidal E×B Mach number Mp to have a value of order unity. Here, E is the electric field and B is the magnetic field. The effects of orbit squeezing not only modify the size of the particle orbit, but also change the fraction of poloidally trapped particles. Resonance between the particle parallel (to B) speed u and the poloidal component of the E×B velocity can only occur for those particles with energy (v/vt)2(approximately-greater-than)M2p (with v the particle speed and vt the thermal speed). Thus, the resonance parallel plasma viscosity in the banana regime decreases exponentially with M2p when M2p≥1, and has a local maximum of M2p∼1.
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  • 92
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    Physics of Plasmas 1 (1994), S. 1199-1213 
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    Notes: The stability of plasma flow in the scrape-off layer of a tokamak, taking into account the surface sheath impedance and the axial shear in the E×B flow is analyzed. An interesting stability problem arises in the limit that end plates are sufficiently far apart, so that stability can be analyzed when the plasma is taken to interact with a single end plate. As parameters are varied, windows of instability are found, and it is shown that growth rates are maximized for an insulating end plate and are also quite sensitive to the ratio of the ion diamagnetic and E×B drift frequencies. Mixing-length estimates of the diffusivity are comparable to experimentally observed values.
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  • 93
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    Physics of Plasmas 1 (1994), S. 1242-1250 
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    Topics: Physics
    Notes: In today's high frequency systems employed for plasma diagnostics, power heating, and current drive the behavior of the wave beams is appreciably affected by the self-diffraction phenomena due to their narrow collimation. In the present article the three-dimensional propagation of Gaussian beams in inhomogeneous and anisotropic media is analyzed, starting from a properly formulated dispersion relation. Particular attention is paid, in the case of electromagnetic electron cyclotron (EC) waves, to the toroidal geometry characterizing tokamak plasmas, to the power density evolution on the advancing wave fronts, and to the absorption features occurring when a beam crosses an EC resonant layer.
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  • 94
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    Physics of Plasmas 1 (1994), S. 1256-1263 
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    Notes: The stability of finite size magnetic islands is analyzed in configurations with multiple resonant magnetic surfaces. It is demonstrated that there are configurations that are linearly stable which can be unstable to finite size perturbations. Two different examples of single helicity double tearing are given for configurations with two q=2 surfaces. In the first case the destabilization is due to the extension of magnetic separatrices out to regions of destabilizng current gradients. For the second case the modes are linearly stabilized by the suppression of the linear coupling of the rational surfaces by differential plasma rotation, which essentially decouples the perturbations around the different rational surfaces. A finite size magnetic island will interact quasilinearly with initial plasma rotation. The plasma rotation is then equilibrated and the mode destabilized.
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    Physics of Plasmas 1 (1994), S. 1287-1302 
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    Topics: Physics
    Notes: The Landau-fluid model is a recently introduced fluid-moment closure scheme [G. W. Hammett and F. W. Perkins, Phys. Rev. Lett. 64, 3019 (1990)] that was designed to include kinetic dissipative effects like Landau damping in fluid calculations. The fluid-moment hierarchy is terminated by assuming linear relationships among the retained moments in Fourier-transform space, with coefficients determined by matching the plasma response to that obtained from a kinetic analysis. This paper generalizes the technique to the full range of ion and electron collisionality and applies it to a new fluid simulation code constructed to study laser filamentation in underdense plasmas [Berger et al., Phys. Fluids B 5, 2243 (1993)]. By matching the ion-acoustic complex frequency derived from the fluid model with that predicted by collisional, Fokker–Planck, and kinetic analyses, the specific heat ratio, thermal conductivity coefficient, and viscosity coefficient for ions and the thermal conductivity coefficient for electrons are determined as functions of the wave number k. For frequencies much less than the pump frequency this leads to a fourth-order polynomial dispersion relation whose spectrum includes damped ion-acoustic waves as well as filamentation modes whose stability depends on the pump strength. An analytic instability threshold condition on the laser intensity is derived from which the relative importance of ponderomotive and thermal drives can be assessed. Expressions for the linear susceptibilities in the presence of a finite-amplitude pump are also given, which might prove useful for understanding spectral linewidths for Thomson scattering.
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    Physics of Plasmas 1 (1994), S. 2026-2037 
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    Topics: Physics
    Notes: A quantum collective approach is developed to investigate linear transport properties of a system of highly degenerate weakly coupled electrons and strongly coupled semiclassical ions. The basic formalism rests upon suitable extention of the Boltzmann–Bloch quantum transport equation. The model considers electron–ion (e–i) and electron–electron (e–e) collisions in a unified scheme of both long- and short-range Coulomb interactions. The e–e collisions contribute to the thermal conductivity calculation in the low coupling regime. Even though they can be insignificant for strongly coupled systems, the extensively used Lorentz gas approximation cannot be justified for plasmas of astrophysical interests. It is shown that the Lorentz ratio of high-density plasma may exhibit substantial negative deviation from the ideal Sommerfeld value, due to some nonidealities, such as e–e interaction and quantum effects. Results are presented under analytical and compact forms allowing numerical applications, as well as comparisons with existing theories.
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    Physics of Plasmas 1 (1994), S. 2063-2071 
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    Topics: Physics
    Notes: A dense pulsed electron beam (tr≤20 ns, Vb=200 V, ib≤2 A, nb/ne≤10%) is injected into a uniform magnetoplasma (ne=1−4×1010 cm−3, kTe≤0.5 eV, B0=90 G) to study wave–particle interactions that occur at the front of the beam on short-time scales during which the ions are regarded as fixed and immobile. Above a threshold beam density (nb/ne(approximately-greater-than)5%), the beam front is observed using optical diagnostics to rapidly erode due to beam scattering and energetic tail production, and broaden into a warm front that propagates slower than its injected speed. Using radio-frequency (RF) antennas, the beam is observed to bunch due to the streaming beam–plasma instability and create a ballistic beam mode (fB=nfpe), which collapses into broadband electrostatic turbulence during the onset of beam scattering. A low-frequency electrostatic wave mode (fpi〈fLF〈fpe) is also detected that is coupled to the scattering process. These measurements show that rich beam–plasma phenomena occur in this electron time-scale regime, which are not adequately addressed by current plasma theory.
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    Physics of Plasmas 1 (1994), S. 1128-1136 
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    Notes: The confinement of ions and electrons by linear and nonlinear fields is studied. It is assumed that both species are perturbed by collisions with a neutral background gas with the resulting energy and momentum transfer between the interacting species. Asymptotic expansions, based on a singular perturbation approach in terms of the momentum exchange during collisions, are used to determine the distribution function of the confined species.
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    Physics of Plasmas 1 (1994), S. 1159-1167 
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    Topics: Physics
    Notes: Nonlinear low-frequency long wavelength waves are studied in the framework of the proposed method of the direct kinetic equation expansion in the inverse gyrofrequency power series. Nonlinear two-dimensional equations are found for perpendicular magnetosonic waves with subsequent reduction to the Korteweg–de Vries equation for quasistationary one-dimensional (QS1D) perpendicular magnetosonic wave. The dispersion is determined by the ion gyroradius ρi. Equations for nonlinear QS1D parallel Alfvén waves and QS1D oblique fast magnetosonic waves are found. It is shown that the form of the equations coincides with that one obtained from hydrodynamics but the dispersion lengths and coefficients at nonlinear terms are different. Dispersion of quasiparallel fast waves is positive and determined by the ion inertial length c/ωpi, while quasiperpendicular waves have negative dispersion determined by the ion gyroradius ρi.
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    Physics of Plasmas 1 (1994), S. 1195-1198 
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    Source: AIP Digital Archive
    Topics: Physics
    Notes: An explanation, supported by numerical simulations and analytical theory, is given for the harmonic cyclotron emission induced by fast ions in tokamak plasmas—in particular, for the emission observed at low harmonics in deuterium–deuterium and deuterium–tritium experiments in the Joint European Torus [e.g., Phys. Rev. Lett. 60, 33 (1988)]. It is shown that the first proton harmonic, whose field energy amplitude scales as the 0.84 power of the proton density, is one of the highest spectral peaks, whereas the first alpha harmonic is weak. The relative spectral amplitudes of different harmonics are compared. The results are consistent with the experimental observations. The simulations verify that the instabilities are caused by a weak relativistic mass effect. Simulation also shows that a nonuniform magnetic field leads to no appreciable change in the growth rate and saturation amplitude of the waves.
    Type of Medium: Electronic Resource
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