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  • 1
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    Buzzards Bay Water Quality Data from the Buzzards Bay Coalition’s Baywatchers Program 1992-2018 (2020)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2020-08-28
    Description: The Buzzards Bay Coalition’s Baywatchers Monitoring Program collected summertime water quality information at more than 150 stations around Buzzards Bay, Massachusetts from 1992 to 2018. Baywatchers monitoring data document nutrient-related water quality and the effects of nitrogen pollution. The large majority of stations are located in sub-estuaries of the main Bay, although stations in central Buzzards Bay and Vineyard Sound were added beginning in 2007. Measurements include temperature, salinity, Secchi depth and concentrations of dissolved oxygen, ammonium, nitrate + nitrite, total dissolved nitrogen, particulate organic nitrogen, particulate organic carbon, ortho-phosphate, chlorophyll a, pheophytin a, and in lower salinity waters, total phosphorus and dissolved organic carbon. The Baywatchers dataset provides a long-term record of the water quality of Buzzards Bay and its sub-estuaries. The data have been used to identify impaired waters, evaluate discharge permits, support the development of nitrogen total maximum daily loads, develop strategies for reducing nitrogen inputs, and increase public awareness and generate support for management actions to control nutrient pollution and improve water quality.
    Description: The Buzzards Bay Baywatchers water quality monitoring program was established in 1992 by the Buzzards Bay National Estuary Program (NEP), in partnership with the Buzzards Bay Coalition, under US EPA Cooperative Agreement CE001510 with the Commonwealth of Massachusetts. The monitoring program was exclusively funded by the Buzzards Bay NEP under various EPA Cooperative Agreement grants from 1992 - 1996, then subsequently managed and funded by the Buzzards Bay Coalition primarily through contributions from the organization’s members and private foundations, grants from the Commonwealth of Massachusetts, and through continued reduced support from the Buzzards Bay NEP through EPA grants. The Coalition's oxygen and nutrient databases were combined into a structured reference database table by Costa in 2014 under a task contained in EPA Cooperative Agreement (CE96144201).
    Keywords: water quality ; Buzzards Bay ; nitrogen ; eutrophication ; coastal ; citizen science
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 2
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    Buzzards Bay Water Quality Data from the Buzzards Bay Coalition’s Baywatchers Program 1992-2020 (2021)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2021-07-09
    Description: The Buzzards Bay Coalition’s Baywatchers Monitoring Program collected summertime water quality information at more than 150 stations around Buzzards Bay, Massachusetts from 1992 to 2020. Baywatchers monitoring data document nutrient-related water quality and the effects of nitrogen pollution. The large majority of stations are located in sub-estuaries of the main Bay, although stations in central Buzzards Bay and Vineyard Sound were added beginning in 2007. Measurements include temperature, salinity, Secchi depth and concentrations of dissolved oxygen, ammonium, nitrate + nitrite, total dissolved nitrogen, particulate organic nitrogen, particulate organic carbon, ortho-phosphate, chlorophyll a, pheophytin a, and in lower salinity waters, total phosphorus and dissolved organic carbon. The Baywatchers dataset provides a long-term record of the water quality of Buzzards Bay and its sub-estuaries. The data have been used to identify impaired waters, evaluate discharge permits, support the development of nitrogen total maximum daily loads, develop strategies for reducing nitrogen inputs, and increase public awareness and generate support for management actions to control nutrient pollution and improve water quality. The Readme, STN_EQUIV, Stations and Methods, S_D for WFH, and Acknowledge tabs were updated and corrections were made for Time and POC on 2018 Upper Bay samples and deleted CH1 from sonde method column where no CHL data existed, moved words like "sample lost" from Chl and Pheo data columns to comments column.
    Keywords: water quality ; Buzzards Bay ; nitrogen ; eutrophication ; coastal ; citizen science
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 3
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    Soil warming alters nitrogen cycling in a New England forest : implications for ecosystem function and structure (2012)
    Springer
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2011. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Oecologia 168 (2012): 819-828, doi:10.1007/s00442-011-2133-7.
    Description: Global climate change is expected to affect terrestrial ecosystems in a variety of ways. Some of the more well-studied effects include the biogeochemical feedbacks to the climate system that can either increase or decrease the atmospheric load of greenhouse gases such as carbon dioxide and nitrous oxide. Less well-studied are the effects of climate change on the linkages between soil and plant processes. Here, we report the effects of soil warming on these linkages observed in a large field manipulation of a deciduous forest in southern New England, USA, where soil was continuously warmed 5°C above ambient for 7 years. Over this period, we have observed significant changes to the nitrogen cycle that have the potential to affect tree species composition in the long term. Since the start of the experiment, we have documented a 45% average annual increase in net nitrogen mineralization and a three-fold increase in nitrification such that in years 5 through 7, 25% of the nitrogen mineralized is then nitrified. The warming-induced increase of available nitrogen resulted in increases in the foliar nitrogen content and the relative growth rate of trees in the warmed area. Acer rubrum (red maple) trees have responded the most after 7 years of warming, with the greatest increases in both foliar nitrogen content and relative growth rates. Our study suggests that considering species-specific responses to increases in nitrogen availability and changes in nitrogen form is important in predicting future forest composition and feedbacks to the climate system.
    Description: This work was supported by the National Institute for Climate Change Research (DOE-DE-FCO2-06-ER64157), DOE BER (DE-SC0005421) and the Harvard Forest Long-Term Ecological Research program (NSF-DEB-0620443).
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Format: application/msword
    Format: application/pdf
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  • 4
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    Buzzards Bay Water Quality Data from the Buzzards Bay Coalition’s Baywatchers Program 1992-2018 August 2020 version (2020)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2020-08-28
    Description: The Buzzards Bay Coalition’s Baywatchers Monitoring Program collected summertime water quality information at more than 150 stations around Buzzards Bay, Massachusetts from 1992 to 2018. Baywatchers monitoring data document nutrient-related water quality and the effects of nitrogen pollution. The large majority of stations are located in sub-estuaries of the main Bay, although stations in central Buzzards Bay and Vineyard Sound were added beginning in 2007. Measurements include temperature, salinity, Secchi depth and concentrations of dissolved oxygen, ammonium, nitrate + nitrite, total dissolved nitrogen, particulate organic nitrogen, particulate organic carbon, ortho-phosphate, chlorophyll a, pheophytin a, and in lower salinity waters, total phosphorus and dissolved organic carbon. The Baywatchers dataset provides a long-term record of the water quality of Buzzards Bay and its sub-estuaries. The data have been used to identify impaired waters, evaluate discharge permits, support the development of nitrogen total maximum daily loads, develop strategies for reducing nitrogen inputs, and increase public awareness and generate support for management actions to control nutrient pollution and improve water quality. The Readme, STN_EQUIV, Stations and Methods, S_D for WFH, and Acknowledge tabs were updated and corrections were made for Time and POC on 2018 Upper Bay samples and deleted CH1 from sonde method column where no CHL data existed, moved words like "sample lost" from Chl and Pheo data columns to comments column.
    Keywords: water quality ; Buzzards Bay ; nitrogen ; eutrophication ; coastal ; citizen science
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 5
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    Buzzards Bay Water Quality Data from the Buzzards Bay Coalition’s Baywatchers Program 1992-2018 December 2020 version (2020)
    Woods Hole Oceanographic Institution
    Details
    Publication Date: 2020-12-11
    Description: The Buzzards Bay Coalition’s Baywatchers Monitoring Program collected summertime water quality information at more than 150 stations around Buzzards Bay, Massachusetts from 1992 to 2018. Baywatchers monitoring data document nutrient-related water quality and the effects of nitrogen pollution. The large majority of stations are located in sub-estuaries of the main Bay, although stations in central Buzzards Bay and Vineyard Sound were added beginning in 2007. Measurements include temperature, salinity, Secchi depth and concentrations of dissolved oxygen, ammonium, nitrate + nitrite, total dissolved nitrogen, particulate organic nitrogen, particulate organic carbon, ortho-phosphate, chlorophyll a, pheophytin a, and in lower salinity waters, total phosphorus and dissolved organic carbon. The Baywatchers dataset provides a long-term record of the water quality of Buzzards Bay and its sub-estuaries. The data have been used to identify impaired waters, evaluate discharge permits, support the development of nitrogen total maximum daily loads, develop strategies for reducing nitrogen inputs, and increase public awareness and generate support for management actions to control nutrient pollution and improve water quality. The Readme, STN_EQUIV, Stations and Methods, S_D for WFH, and Acknowledge tabs were updated and corrections were made for Time and POC on 2018 Upper Bay samples and deleted CH1 from sonde method column where no CHL data existed, moved words like "sample lost" from Chl and Pheo data columns to comments column.
    Keywords: water quality ; Buzzards Bay ; nitrogen ; eutrophication ; coastal ; citizen science
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 6
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    Water quality measurements in Buzzards Bay by the Buzzards Bay Coalition Baywatchers Program from 1992 to 2018 (2021)
    Nature Research
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jakuba, R. W., Williams, T., Neill, C., Costa, J. E., McHorney, R., Scott, L., Howes, B. L., Ducklow, H., Erickson, M., & Rasmussen, M. Water quality measurements in Buzzards Bay by the Buzzards Bay Coalition Baywatchers Program from 1992 to 2018. Scientific Data, 8(1), 2021: 76, https://doi.org/10.1038/s41597-021-00856-4.
    Description: The Buzzards Bay Coalition’s Baywatchers Monitoring Program (Baywatchers) collected summertime water quality information at more than 150 stations around Buzzards Bay, Massachusetts from 1992 to 2018. Baywatchers documents nutrient-related water quality and the effects of nitrogen pollution. The large majority of stations are located in sub-estuaries of the main Bay, although stations in central Buzzards Bay and Vineyard Sound were added beginning in 2007. Measurements include temperature, salinity, Secchi depth and concentrations of dissolved oxygen, ammonium, nitrate + nitrite, total dissolved nitrogen, particulate organic nitrogen, particulate organic carbon, ortho-phosphate, chlorophyll a, pheophytin a, and in lower salinity waters, total phosphorus and dissolved organic carbon. The Baywatchers dataset provides a long-term record of the water quality of Buzzards Bay and its sub-estuaries. The data have been used to identify impaired waters, evaluate discharge permits, support the development of nitrogen total maximum daily loads, develop strategies for reducing nitrogen inputs, and increase public awareness and generate support for management actions to control nutrient pollution and improve water quality.
    Description: We thank the more than 1,500 volunteer Baywatchers citizen monitors who helped collect this information over 27 years. Since its inception, funding for this program has been provided through grants from the Commonwealth of Massachusetts, the U.S. Environmental Protection Agency, Buzzards Bay municipalities, private foundations, and members of the Buzzards Bay Coalition. Thank you to Paul Lefebvre for producing the station map. Amy Costa of the Center for Coastal Studies kindly provided data for comparison. Brian Howes of the School for Marine Science and Technology, University of Massachusetts, Dartmouth kindly provided the data for West Falmouth Harbor collected through the Falmouth Pond Watchers program. We thank the Marine Biological Laboratory and the Woodwell Climate Research Center for support to C. Neill, R. McHorney and L. Scott.
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
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    IgD class switching is initiated by microbiota and limited to mucosa-associated lymphoid tissue in mice (2017)
    National Academy of Sciences
    Details
    Publication Date: 2017-01-30
    Description: Class-switch recombination (CSR) alters the Ig isotype to diversify antibody effector functions. IgD CSR is a rare event, and its regulation is poorly understood. We report that deficiency of 53BP1, a DNA damage-response protein, caused age-dependent overproduction of secreted IgD resulting from increased IgD CSR exclusively within B cells of mucosa-associated lymphoid tissues. IgD overproduction was dependent on activation-induced cytidine deaminase, hematopoietic MyD88 expression, and an intact microbiome, against which circulating IgD, but not IgM, was reactive. IgD CSR occurred via both alternative nonhomologous end-joining and homologous recombination pathways. Microbiota-dependent IgD CSR also was detected in nasal-associated lymphoid tissue of WT mice. These results identify a pathway, present in WT mice and hyperactivated in 53BP1-deficient mice, by which microbiota signal via Toll-like receptors to elicit IgD CSR.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
    Published by National Academy of Sciences
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  • 8
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    Real-time resolution of point mutations that cause phenovariance in mice (2015)
    National Academy of Sciences
    Details
    Publication Date: 2015-01-20
    Description: With the wide availability of massively parallel sequencing technologies, genetic mapping has become the rate limiting step in mammalian forward genetics. Here we introduce a method for real-time identification of N-ethyl-N-nitrosourea-induced mutations that cause phenotypes in mice. All mutations are identified by whole exome G1 progenitor sequencing and their zygosity is established in G2/G3 mice before phenotypic assessment. Quantitative and qualitative traits, including lethal effects, in single or multiple combined pedigrees are then analyzed with Linkage Analyzer, a software program that detects significant linkage between individual mutations and aberrant phenotypic scores and presents processed data as Manhattan plots. As multiple alleles of genes are acquired through mutagenesis, pooled “superpedigrees” are created to analyze the effects. Our method is distinguished from conventional forward genetic methods because it permits (1) unbiased declaration of mappable phenotypes, including those that are incompletely penetrant (2), automated identification of causative mutations concurrent with phenotypic screening, without the need to outcross mutant mice to another strain and backcross them, and (3) exclusion of genes not involved in phenotypes of interest. We validated our approach and Linkage Analyzer for the identification of 47 mutations in 45 previously known genes causative for adaptive immune phenotypes; our analysis also implicated 474 genes not previously associated with immune function. The method described here permits forward genetic analysis in mice, limited only by the rates of mutant production and screening.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
    Published by National Academy of Sciences
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  • 9
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    Comparative study of the discrete velocity and lattice Boltzmann methods for rarefied gas flows through irregular channels (2017)
    American Physical Society (APS)
    Details
    Publication Date: 2017-08-26
    Description: Author(s): Wei Su, Scott Lindsay, Haihu Liu, and Lei Wu (吴雷) Rooted from the gas kinetics, the lattice Boltzmann method (LBM) is a powerful tool in modeling hydrodynamics. In the past decade, it has been extended to simulate rarefied gas flows beyond the Navier-Stokes level, either by using the high-order Gauss-Hermite quadrature, or by introducing the relaxa... [Phys. Rev. E 96, 023309] Published Fri Aug 25, 2017
    Keywords: Computational Physics
    Print ISSN: 1539-3755
    Electronic ISSN: 1550-2376
    Topics: Physics
    Published by American Physical Society (APS)
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  • 10
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    NLRP3 activation and mitosis are mutually exclusive events coordinated by NEK7, a new inflammasome component (2015)
    Springer Nature
    Details
    Publication Date: 2015-12-07
    Print ISSN: 1529-2908
    Electronic ISSN: 1529-2916
    Topics: Biology , Medicine
    Published by Springer Nature
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