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  • 1
    Publication Date: 2010-05-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scheres, Ben -- England -- Nature. 2010 May 20;465(7296):299-300. doi: 10.1038/465299a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20485422" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arabidopsis/cytology/genetics/growth & development/*metabolism ; Arabidopsis Proteins/metabolism ; *Cell Lineage ; Cell Movement ; Drosophila melanogaster/cytology/embryology/metabolism ; *Gene Dosage ; MicroRNAs/genetics/*metabolism ; Organogenesis ; Plant Roots/*cytology/genetics/growth & development/metabolism ; RNA Transport ; RNA, Plant/genetics/*metabolism ; *Signal Transduction ; Transcription Factors/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2008-10-28
    Description: Dynamically polarized membrane proteins define different cell boundaries and have an important role in intercellular communication-a vital feature of multicellular development. Efflux carriers for the signalling molecule auxin from the PIN family are landmarks of cell polarity in plants and have a crucial involvement in auxin distribution-dependent development including embryo patterning, organogenesis and tropisms. Polar PIN localization determines the direction of intercellular auxin flow, yet the mechanisms generating PIN polarity remain unclear. Here we identify an endocytosis-dependent mechanism of PIN polarity generation and analyse its developmental implications. Real-time PIN tracking showed that after synthesis, PINs are initially delivered to the plasma membrane in a non-polar manner and their polarity is established by subsequent endocytic recycling. Interference with PIN endocytosis either by auxin or by manipulation of the Arabidopsis Rab5 GTPase pathway prevents PIN polarization. Failure of PIN polarization transiently alters asymmetric auxin distribution during embryogenesis and increases the local auxin response in apical embryo regions. This results in ectopic expression of auxin pathway-associated root-forming master regulators in embryonic leaves and promotes homeotic transformation of leaves to roots. Our results indicate a two-step mechanism for the generation of PIN polar localization and the essential role of endocytosis in this process. It also highlights the link between endocytosis-dependent polarity of individual cells and auxin distribution-dependent cell fate establishment for multicellular patterning.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2692841/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2692841/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dhonukshe, Pankaj -- Tanaka, Hirokazu -- Goh, Tatsuaki -- Ebine, Kazuo -- Mahonen, Ari Pekka -- Prasad, Kalika -- Blilou, Ikram -- Geldner, Niko -- Xu, Jian -- Uemura, Tomohiro -- Chory, Joanne -- Ueda, Takashi -- Nakano, Akihiko -- Scheres, Ben -- Friml, Jiri -- R01 GM052413/GM/NIGMS NIH HHS/ -- R01 GM052413-13/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2008 Dec 18;456(7224):962-6. doi: 10.1038/nature07409. Epub 2008 Oct 26.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH, Utrecht, The Netherlands. P.B.Dhonukshe@uu.nl〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18953331" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/*cytology/embryology/enzymology/*metabolism ; Arabidopsis Proteins/metabolism ; *Cell Lineage ; *Cell Polarity ; Embryonic Development ; *Endocytosis ; Indoleacetic Acids/*metabolism ; Membrane Transport Proteins/metabolism ; Plant Leaves/embryology/metabolism ; Plant Roots/embryology/metabolism ; Protein Transport ; Seeds/cytology/embryology/enzymology/metabolism ; rab5 GTP-Binding Proteins/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2006-04-08
    Description: Polar flow of the phytohormone auxin requires plasma membrane-associated PIN proteins and underlies multiple developmental processes in plants. Here we address the importance of the polarity of subcellular PIN localization for the directionality of auxin transport in Arabidopsis thaliana. Expression of different PINs in the root epidermis revealed the importance of PIN polar positions for directional auxin flow and root gravitropic growth. Interfering with sequence-embedded polarity signals directly demonstrates that PIN polarity is a primary factor in determining the direction of auxin flow in meristematic tissues. This finding provides a crucial piece in the puzzle of how auxin flow can be redirected via rapid changes in PIN polarity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wisniewska, Justyna -- Xu, Jian -- Seifertova, Daniela -- Brewer, Philip B -- Ruzicka, Kamil -- Blilou, Ikram -- Rouquie, David -- Benkova, Eva -- Scheres, Ben -- Friml, Jiri -- New York, N.Y. -- Science. 2006 May 12;312(5775):883. Epub 2006 Apr 6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Center for Plant Molecular Biology (ZMBP), Tubingen University, D-72076 Tubingen, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16601151" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/cytology/growth & development/*metabolism ; Arabidopsis Proteins/chemistry/genetics/*metabolism ; Cell Polarity ; Gravitropism ; Indoleacetic Acids/*metabolism ; Membrane Transport Proteins/chemistry/genetics/*metabolism ; Plant Epidermis/cytology/*metabolism ; Plant Roots/cytology/growth & development/*metabolism ; Promoter Regions, Genetic ; Recombinant Fusion Proteins/metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2013-03-22
    Description: Recent evidence indicates a correlation between orientation of the plant cortical microtubule cytoskeleton and localization of polar cargoes. However, the molecules and mechanisms that create this correlation have remained unknown. Here we show that, in Arabidopsis thaliana, the microtubule orientation regulators CLASP and MAP65 (refs 3, 4) control the abundance of polarity regulator PINOID kinase at the plasma membrane. By localized upregulation of clathrin-dependent endocytosis at cortical microtubule- and clathrin-rich domains orthogonal to the axis of polarity, PINOID accelerates the removal of auxin transporter PIN proteins from those sites. This mechanism links directional microtubule organization to the polar localization of auxin transporter PIN proteins, and clarifies how microtubule-enriched cell sides are kept distinct from polar delivery domains. Our results identify the molecular machinery that connects microtubule organization to the regulation of the axis of PIN polarization.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kakar, Klementina -- Zhang, Hongtao -- Scheres, Ben -- Dhonukshe, Pankaj -- England -- Nature. 2013 Mar 28;495(7442):529-33. doi: 10.1038/nature11980. Epub 2013 Mar 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23515161" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/*cytology/*metabolism ; Arabidopsis Proteins/genetics/*metabolism ; Cell Membrane/metabolism ; Cell Polarity/genetics/*physiology ; Clathrin/metabolism ; Endocytosis ; Indoleacetic Acids/metabolism ; Membrane Transport Proteins/metabolism ; Microtubule-Associated Proteins/genetics/*metabolism ; Microtubules/*metabolism ; Mutant Proteins/genetics/metabolism ; Protein Transport ; Protein-Serine-Threonine Kinases/*metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2014-08-27
    Description: During plant growth, dividing cells in meristems must coordinate transitions from division to expansion and differentiation, thus generating three distinct developmental zones: the meristem, elongation zone and differentiation zone. Simultaneously, plants display tropisms, rapid adjustments of their direction of growth to adapt to environmental conditions. It is unclear how stable zonation is maintained during transient adjustments in growth direction. In Arabidopsis roots, many aspects of zonation are controlled by the phytohormone auxin and auxin-induced PLETHORA (PLT) transcription factors, both of which display a graded distribution with a maximum near the root tip. In addition, auxin is also pivotal for tropic responses. Here, using an iterative experimental and computational approach, we show how an interplay between auxin and PLTs controls zonation and gravitropism. We find that the PLT gradient is not a direct, proportionate readout of the auxin gradient. Rather, prolonged high auxin levels generate a narrow PLT transcription domain from which a gradient of PLT protein is subsequently generated through slow growth dilution and cell-to-cell movement. The resulting PLT levels define the location of developmental zones. In addition to slowly promoting PLT transcription, auxin also rapidly influences division, expansion and differentiation rates. We demonstrate how this specific regulatory design in which auxin cooperates with PLTs through different mechanisms and on different timescales enables both the fast tropic environmental responses and stable zonation dynamics necessary for coordinated cell differentiation.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4326657/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4326657/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Mahonen, Ari Pekka -- ten Tusscher, Kirsten -- Siligato, Riccardo -- Smetana, Ondrej -- Diaz-Trivino, Sara -- Salojarvi, Jarkko -- Wachsman, Guy -- Prasad, Kalika -- Heidstra, Renze -- Scheres, Ben -- 232914/European Research Council/International -- England -- Nature. 2014 Nov 6;515(7525):125-9. doi: 10.1038/nature13663. Epub 2014 Aug 24.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland [2] Molecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, the Netherlands [3] Department of Biosciences, University of Helsinki, Helsinki 00014, Finland [4]. ; 1] Theoretical Biology and Bioinformatics, Utrecht University, Utrecht 3584 CH, the Netherlands [2]. ; 1] Institute of Biotechnology, University of Helsinki, Helsinki 00014, Finland [2] Department of Biosciences, University of Helsinki, Helsinki 00014, Finland. ; 1] Molecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, the Netherlands [2] Plant Developmental Biology, Wageningen University Research, Wageningen 6708 PB, the Netherlands. ; Department of Biosciences, University of Helsinki, Helsinki 00014, Finland. ; Molecular Genetics, Department of Biology, Utrecht University, Utrecht 3584 CH, the Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25156253" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/cytology/*growth & development/*metabolism ; Arabidopsis Proteins/*metabolism ; Cell Differentiation ; Cell Movement ; Gene Expression Regulation, Plant ; Gravitropism ; Indoleacetic Acids/*metabolism ; Meristem/growth & development/metabolism ; Mitosis ; Plant Roots/cytology/growth & development/metabolism ; Transcription Factors/*metabolism
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    Electronic ISSN: 1476-4687
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  • 6
    Publication Date: 2006-01-21
    Description: Plants and some animals have a profound capacity to regenerate organs from adult tissues. Molecular mechanisms for regeneration have, however, been largely unexplored. Here we investigate a local regeneration response in Arabidopsis roots. Laser-induced wounding disrupts the flow of auxin-a cell-fate-instructive plant hormone-in root tips, and we demonstrate that resulting cell-fate changes require the PLETHORA, SHORTROOT, and SCARECROW transcription factors. These transcription factors regulate the expression and polar position of PIN auxin efflux-facilitating membrane proteins to reconstitute auxin transport in renewed root tips. Thus, a regeneration mechanism using embryonic root stem-cell patterning factors first responds to and subsequently stabilizes a new hormone distribution.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Xu, Jian -- Hofhuis, Hugo -- Heidstra, Renze -- Sauer, Michael -- Friml, Jiri -- Scheres, Ben -- New York, N.Y. -- Science. 2006 Jan 20;311(5759):385-8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Genetics, Utrecht University, Padualaan 8, 3584CH Utrecht, Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16424342" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/cytology/genetics/metabolism/*physiology ; Arabidopsis Proteins/genetics/metabolism ; Biological Transport ; Cell Nucleus/metabolism ; Genes, Plant ; Indoleacetic Acids/*metabolism/pharmacology ; Membrane Transport Proteins/*metabolism ; Models, Biological ; Plant Growth Regulators/*metabolism ; Plant Roots/cytology/*physiology ; Recombinant Fusion Proteins/metabolism ; *Regeneration ; Stem Cells/metabolism ; Transcription Factors/genetics/*metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2007-04-21
    Description: Intercellular protein movement plays a critical role in animal and plant development. SHORTROOT (SHR) is a moving transcription factor essential for endodermis specification in the Arabidopsis root. Unlike diffusible animal morphogens, which form a gradient across multiple cell layers, SHR movement is limited to essentially one cell layer. However, the molecular mechanism is unknown. We show that SCARECROW (SCR) blocks SHR movement by sequestering it into the nucleus through protein-protein interaction and a safeguard mechanism that relies on a SHR/SCR-dependent positive feedback loop for SCR transcription. Our studies with SHR and SCR homologs from rice suggest that this mechanism is evolutionarily conserved, providing a plausible explanation why nearly all plants have a single layer of endodermis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cui, Hongchang -- Levesque, Mitchell P -- Vernoux, Teva -- Jung, Jee W -- Paquette, Alice J -- Gallagher, Kimberly L -- Wang, Jean Y -- Blilou, Ikram -- Scheres, Ben -- Benfey, Philip N -- R01-GM043778/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2007 Apr 20;316(5823):421-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biology and Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17446396" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/cytology/genetics/growth & development/*metabolism ; Arabidopsis Proteins/genetics/*metabolism ; Biological Evolution ; Cell Nucleus/metabolism ; Feedback, Physiological ; Gene Expression ; Genes, Plant ; Models, Biological ; Oligonucleotide Array Sequence Analysis ; Oryza/genetics/metabolism ; Plant Proteins/genetics/metabolism ; Plant Roots/*cytology/genetics/growth & development/*metabolism ; Plants, Genetically Modified ; Promoter Regions, Genetic ; Protein Binding ; Protein Transport ; Recombinant Fusion Proteins/metabolism ; Transcription Factors/genetics/*metabolism ; Transcription, Genetic
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2014-10-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Bisseling, Ton -- Scheres, Ben -- New York, N.Y. -- Science. 2014 Oct 17;346(6207):300-1. doi: 10.1126/science.1260942.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Plant Sciences, Laboratory of Molecular Biology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, Netherlands. College of Science, King Saud University, Post Office Box 2455, Riyadh 11451, Saudi Arabia. ton.bisseling@wur.nl. ; Plant Developmental Biology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, Netherlands.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25324371" target="_blank"〉PubMed〈/a〉
    Keywords: Arabidopsis/*growth & development ; Arabidopsis Proteins/*metabolism ; Nitrogen/*metabolism ; Peptides/*metabolism ; Plant Roots/*growth & development ; Plant Shoots/*growth & development ; Receptors, Peptide/*metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2015-10-24
    Description: Tissue patterns are dynamically maintained. Continuous formation of plant tissues during postembryonic growth requires asymmetric divisions and the specification of cell lineages. We show that the BIRDs and SCARECROW regulate lineage identity, positional signals, patterning, and formative divisions throughout Arabidopsis root growth. These transcription factors are postembryonic determinants of the ground tissue stem cells and their lineage. Upon further activation by the positional signal SHORT-ROOT (a mobile transcription factor), they direct asymmetric cell divisions and patterning of cell types. The BIRDs and SCARECROW with SHORT-ROOT organize tissue patterns at all formative steps during growth, ensuring developmental plasticity.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Moreno-Risueno, Miguel A -- Sozzani, Rosangela -- Yardimci, Galip Gurkan -- Petricka, Jalean J -- Vernoux, Teva -- Blilou, Ikram -- Alonso, Jose -- Winter, Cara M -- Ohler, Uwe -- Scheres, Ben -- Benfey, Philip N -- F32 GM086976/GM/NIGMS NIH HHS/ -- F32 GM106690-01/GM/NIGMS NIH HHS/ -- R01-GM043778/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2015 Oct 23;350(6259):426-30. doi: 10.1126/science.aad1171.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biotechnology, Center for Plant Genomics and Biotechnology, Universidad Politecnica de Madrid, 28223 Pozuelo de Alarcon (Madrid), Spain. ; Department of Biology and Howard Hughes Medical Institute, Duke University, Durham, NC 27708, USA. ; Laboratoire de Reproduction et Developpement des Plantes, CNRS, INRA, ENS Lyon, UCBL, Universite de Lyon, 69364 Lyon, France. ; Department of Plant Biology, Wageningen University Research, Wageningen, Netherlands. ; Department of Plant and Microbial Biology, North Carolina State University, Raleigh, NC 27695, USA. ; Berlin Institute for Medical Systems Biology, Max Delbruck Center for Molecular Medicine, 13125 Berlin, Germany. ; Department of Biology and Howard Hughes Medical Institute, Duke University, Durham, NC 27708, USA. philip.benfey@duke.edu.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/26494755" target="_blank"〉PubMed〈/a〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
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  • 10
    Publication Date: 2021-12-06
    Description: Abstract Vegetation covers on dikes and embankment dams have proven as sustainable and cost-effective surface protection against external erosion caused by hydraulic, mechanical, or climatic impacts. Determination of the hydraulic loads that act upon these covers requires the knowledge of the flow resistance. While the high-velocity flows on vegetated slopes are often aerated, the flow aeration has rarely been considered, and no direct measurements of the air-water flow properties have been conducted to date. The air-water flow properties are needed for a direct estimation of important design parameters such as friction factors and residual head at the downstream end. Herein, unique air-water flow measurements were conducted in high-velocity air-water flows down a vegetated chute with a 1:3 slope. Several vegetation covers were tested for a range of flow rates. The experiments revealed strong flow aeration within three-dimensional, fragmented flows associated with complex interactions of vegetation and high-velocity flows. The air-water flow properties were measured with phase-detection intrusive probes providing novel insights into aerated flows on vegetated chutes including distributions of void fraction, bubble count rate, and interfacial velocity as well as direct estimates of energy dissipation and flow resistance. The results highlighted strong flow aeration and energy dissipation for all vegetated configurations. The median equivalent Darcy-Weisbach friction factors for all vegetations were within 0.19 to 0.45, comparable to aerated flows on stepped spillways. The present results highlighted the significant flow resistance of vegetated covers and the need to consider air-water flow properties in the design of vegetated chutes.
    Keywords: 550.78 ; vegetated chutes ; air‐water flow properties
    Language: English
    Type: map
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