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  • 1
    Publication Date: 2012-08-31
    Description: Marine N2 fixing microorganisms, termed diazotrophs, are a key functional group in marine pelagic ecosystems. The biological fixation of dinitrogen (N2) to bioavailable nitrogen provides an important new source of nitrogen for pelagic marine ecosystems and influences primary productivity and organic matter export to the deep ocean. As one of a series of efforts to collect biomass and rates specific to different phytoplankton functional groups, we have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling about 12 000 direct field measurements of cyanobacterial diazotroph abundances (based on microscopic cell counts or qPCR assays targeting the nifH genes) and N2 fixation rates. Biomass conversion factors are estimated based on cell sizes to convert abundance data to diazotrophic biomass. The database is limited spatially, lacking large regions of the ocean especially in the Indian Ocean. The data are approximately log-normal distributed, and large variances exist in most sub-databases with non-zero values differing 5 to 8 orders of magnitude. Reporting the geometric mean and the range of one geometric standard error below and above the geometric mean, the pelagic N2 fixation rate in the global ocean is estimated to be 62 (52–73) Tg N yr−1 and the pelagic diazotrophic biomass in the global ocean is estimated to be 2.1 (1.4–3.1) Tg C from cell counts and to 89 (43–150) Tg C from nifH-based abundances. Reporting the arithmetic mean and one standard error instead, these three global estimates are 140 ± 9.2 Tg N yr−1, 18 ± 1.8 Tg C and 590 ± 70 Tg C, respectively. Uncertainties related to biomass conversion factors can change the estimate of geometric mean pelagic diazotrophic biomass in the global ocean by about ±70%. It was recently established that the most commonly applied method used to measure N2 fixation has underestimated the true rates. As a result, one can expect that future rate measurements will shift the mean N2 fixation rate upward and may result in significantly higher estimates for the global N2 fixation. The evolving database can nevertheless be used to study spatial and temporal distributions and variations of marine N2 fixation, to validate geochemical estimates and to parameterize and validate biogeochemical models, keeping in mind that future rate measurements may rise in the future. The database is stored in PANGAEA (doi:10.1594/PANGAEA.774851).
    Print ISSN: 1866-3508
    Electronic ISSN: 1866-3516
    Topics: Geosciences
    Published by Copernicus
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  • 2
    Publication Date: 2012-02-13
    Description: Marine N2 fixing microorganisms, termed diazotrophs, are a key functional group in marine pelagic ecosystems. The biological fixation of dinitrogen (N2) to bioavailable nitrogen provides an important new source of nitrogen for pelagic marine ecosystems and influences primary productivity and organic matter export to the deep ocean. As one of a series of efforts to collect biomass and rates specific to different phytoplankton functional groups, we have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling about 12 000 direct field measurements of cyanobacterial diazotroph abundances (based on microscopic cell counts or qPCR assays targeting the nifH genes) and N2 fixation rates. Biomass conversion factors are estimated based on cell sizes to convert abundance data to diazotrophic biomass. The database is limited spatially, lacking large regions of the ocean especially in the Indian Ocean. The data are approximately log-normal distributed, and large variances exist in most sub-databases with non-zero values differing 5 to 8 orders of magnitude. Lower mean N2 fixation rate was found in the North Atlantic Ocean than the Pacific Ocean. Reporting the geometric mean and the range of one geometric standard error below and above the geometric mean, the pelagic N2 fixation rate in the global ocean is estimated to be 62 (53–73) Tg N yr−1 and the pelagic diazotrophic biomass in the global ocean is estimated to be 4.7 (2.3–9.6) Tg C from cell counts and to 89 (40–200) Tg C from nifH-based abundances. Uncertainties related to biomass conversion factors can change the estimate of geometric mean pelagic diazotrophic biomass in the global ocean by about ±70%. This evolving database can be used to study spatial and temporal distributions and variations of marine N2 fixation, to validate geochemical estimates and to parameterize and validate biogeochemical models. The database is stored in PANGAEA (http://doi.pangaea.de/10.1594/PANGAEA.774851).
    Electronic ISSN: 1866-3591
    Topics: Geosciences
    Published by Copernicus
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  • 3
    Publication Date: 2011-06-27
    Print ISSN: 0171-8630
    Electronic ISSN: 1616-1599
    Topics: Biology
    Published by Inter-Research
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  • 4
    Publication Date: 2020-05-13
    Description: Marine N2 fixing microorganisms, termed diazotrophs, are a key functional group in marine pelagic ecosystems. The biological fixation of dinitrogen (N2) to bioavailable nitrogen provides an important new source of nitrogen for pelagic marine ecosystems and influences primary productivity and organic matter export to the deep ocean. As one of a series of efforts to collect biomass and rates specific to different phytoplankton functional groups, we have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling about 12 000 direct field measurements of cyanobacterial diazotroph abundances (based on microscopic cell counts or qPCR assays targeting the nifH genes) and N2 fixation rates. Biomass conversion factors are estimated based on cell sizes to convert abundance data to diazotrophic biomass. The database is limited spatially, lacking large regions of the ocean especially in the Indian Ocean. The data are approximately log-normal distributed, and large variances exist in most sub-databases with non-zero values differing 5 to 8 orders of magnitude. Reporting the geometric mean and the range of one geometric standard error below and above the geometric mean, the pelagic N2 fixation rate in the global ocean is estimated to be 62 (52–73) Tg N yr−1 and the pelagic diazotrophic biomass in the global ocean is estimated to be 2.1 (1.4–3.1) Tg C from cell counts and to 89 (43–150) Tg C from nifH-based abundances. Reporting the arithmetic mean and one standard error instead, these three global estimates are 140 ± 9.2 Tg N yr−1, 18 ± 1.8 Tg C and 590 ± 70 Tg C, respectively. Uncertainties related to biomass conversion factors can change the estimate of geometric mean pelagic diazotrophic biomass in the global ocean by about ±70%. It was recently established that the most commonly applied method used to measure N2 fixation has underestimated the true rates. As a result, one can expect that future rate measurements will shift the mean N2 fixation rate upward and may result in significantly higher estimates for the global N2 fixation. The evolving database can nevertheless be used to study spatial and temporal distributions and variations of marine N2 fixation, to validate geochemical estimates and to parameterize and validate biogeochemical models, keeping in mind that future rate measurements may rise in the future. The database is stored in PANGAEA (doi:10.1594/PANGAEA.774851).
    Type: Article , PeerReviewed
    Format: text
    Format: text
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  • 5
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    Unknown
    PANGAEA
    In:  Supplement to: Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012
    Publication Date: 2023-03-27
    Description: The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedented global data set for ecological and biochemical analysis and modeling as well as a clear mandate for compiling additional existing data and for focusing future data gathering efforts on key groups in key areas of the ocean. This is a gridded data product about diazotrophic organisms . There are 6 variables. Each variable is gridded on a dimension of 360 (longitude) * 180 (latitude) * 33 (depth) * 12 (month). The first group of 3 variables are: (1) number of biomass observations, (2) biomass, and (3) special nifH-gene-based biomass. The second group of 3 variables is same as the first group except that it only grids non-zero data. We have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling more than 11,000 direct field measurements including 3 sub-databases: (1) nitrogen fixation rates, (2) cyanobacterial diazotroph abundances from cell counts and (3) cyanobacterial diazotroph abundances from qPCR assays targeting nifH genes. Biomass conversion factors are estimated based on cell sizes to convert abundance data to diazotrophic biomass. Data are assigned to 3 groups including Trichodesmium, unicellular diazotrophic cyanobacteria (group A, B and C when applicable) and heterocystous cyanobacteria (Richelia and Calothrix). Total nitrogen fixation rates and diazotrophic biomass are calculated by summing the values from all the groups. Some of nitrogen fixation rates are whole seawater measurements and are used as total nitrogen fixation rates. Both volumetric and depth-integrated values were reported. Depth-integrated values are also calculated for those vertical profiles with values at 3 or more depths.
    Keywords: MAREMIP; MARine Ecosystem Model Intercomparison Project
    Type: Dataset
    Format: application/zip, 1.7 MBytes
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  • 6
    Publication Date: 2023-11-15
    Keywords: Calculated after Luo et al. (2012); CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Event label; Hawaiian Islands, North Central Pacific; Latitude of event; Longitude of event; Nitrogen Fixation (C2H2 Reduction); Nitrogen fixation rate, total; Nitrogen fixation rate, whole seawater; North Pacific; Ocean PERturbation EXperiment; OPEREX; OPEREX_1; OPEREX_2; OPEREX_3; OPEREX_4; OPEREX_5; OPEREX_6; OPEREX_7; OPEREX_8; OPEREX_9; Pacific Open Ocean Bloom; POOB; POOB_1; POOB_10; POOB_11; POOB_12; POOB_13; POOB_14; POOB_15; POOB_2; POOB_3; POOB_4; POOB_5; POOB_6; POOB_7; POOB_8; POOB_9
    Type: Dataset
    Format: text/tab-separated-values, 86 data points
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  • 7
    facet.materialart.
    Unknown
    PANGAEA
    In:  Supplement to: Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012
    Publication Date: 2023-12-09
    Description: The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedented global data set for ecological and biochemical analysis and modeling as well as a clear mandate for compiling additional existing data and for focusing future data gathering efforts on key groups in key areas of the ocean. The present data set presents depth integrated values of diazotrophs abundance and biomass, computed from a collection of source data sets.
    Keywords: 33KB20020923; 33RR20030714; A2/19921126; A2/1992-11-27; AMT8/1999-05-05; AMT8/1999-05-06; AMT8/1999-05-07; AMT8/1999-05-08; AMT8/1999-05-10; AMT8/1999-05-12; AMT8/1999-05-13; AMT8/1999-05-18; AMT8/1999-05-20; AMT8/1999-05-21; AMT8/1999-05-23; AMT8/1999-05-25; AMT8/1999-05-26; AMT8/1999-05-28; AMT8/1999-05-29; AT19641122; AT19641123; AT19641202; AT19641203; AT19641208; Atlantic; Barbados; Barbados_1974-07-09_1; Barbados_1974-07-16_1; Barbados_1974-07-23_1; Barbados_1974-07-28_1; Barbados_1974-08-07_1; Barbados_1974-08-11_1; Barbados_1974-08-21_1; Barbados_1974-08-27_1; Barbados_1974-09-03_1; Barbados_1974-09-10_1; Barbados_1974-09-17_1; Barbados_1974-09-24_1; Barbados_1974-10-03_1; Barbados_1974-10-08_1; Barbados_1974-10-15_1; Barbados_1974-10-22_1; Barbados_1974-10-29_1; Barbados_1974-11-05_1; Barbados_1974-11-12_1; Barbados_1974-11-19_1; Barbados_1974-11-29_1; Barbados_1974-12-03_1; Barbados_1974-12-10_1; Barbados_1974-12-17_1; Barbados_1974-12-23_1; Barbados_1974-12-30_1; Barbados_1975-01-07_1; Barbados_1975-01-14_1; Barbados_1975-01-21_1; Barbados_1975-01-31_1; Barbados_1975-02-04_1; Barbados_1975-02-11_1; Barbados_1975-02-15_1; Barbados_1975-03-05_1; Barbados_1975-03-18_1; Barbados_1975-04-01_1; Barbados_1975-04-18_1; Barbados_1975-04-29_1; Barbados_1975-05-13_1; Barbados_1975-05-21_1; Barbados_1975-05-27_1; Barbados_1975-06-10_1; Barbados_1975-06-24_1; Barbados_1975-07-08_1; Barbados_1975-08-05_1; Barbados_1975-08-25_1; Barbados_1975-10-15_1; Barbados_1975-11-17_1; Barbados_1975-12-10_1; Barbados_1976-01-02_1; Barbados_1976-01-19_1; Barbados_1976-02-10_1; Barbados_1976-03-12_1; Barbados_1976-04-15_1; Barbados_1976-05-14_1; BATS1995-05-15; BATS1996-10-10; Bermuda, Atlantic Ocean; Bottle, Niskin; CAIBEX-I; CAIBEX-I_2; CAIBEX-I_3; CAIBEX-I_5; CAIBEX-I_6; CAIBEX-II; CAIBEX-II_01; CAIBEX-II_02; CAIBEX-II_03; CAIBEX-II_04; CAIBEX-II_05; CAIBEX-II_06; CAIBEX-II_07; CAIBEX-II_08; CAIBOX; CAIBOX_01; CAIBOX_02; CAIBOX_03; CAIBOX_04; CAIBOX_05; CAIBOX_06; CAIBOX_07; CAIBOX_08; CAIBOX_09; CAIBOX_10; CAIBOX_11; CAIBOX_12; CAIBOX_13; CAIBOX_14; CAIBOX_15; CAIBOX_16; CAIBOX_17; Calculated; Calothrix, associated species; Calothrix, carbon per cell; Calothrix abundance, cells; China Sea; Chlorophyll total, areal concentration; CTD, Seabird; CTD/Rosette; CTD-R; CTD-RO; Date/Time of event; Depth, bottom/max; Depth, top/min; DEPTH, water; Diazotrophs, total biomass as carbon; East China Sea; ECS1993-11-15_1; ECS1993-11-15_2; ECS1993-11-15_3; ECS1993-11-15_4; ECS1993-11-15_5; ECS1993-11-15_6; ECS1994-03-15_1; ECS1994-03-15_2; ECS1994-03-15_3; ECS1994-03-15_4; ECS1994-03-15_5; ECS1994-05-05_1; ECS1994-05-05_2; ECS1994-07-05_1; ECS1994-07-05_2; ECS1994-07-05_3; ECS1994-07-05_4; ECS1995-03-28_1; ECS1995-03-28_2; ECS1995-04-17_1; ECS1995-04-17_2; ECS1995-04-17_3; ECS1995-04-17_4; ECS1995-04-17_5; ECS1995-10-01_1; ECS1995-10-01_10; ECS1995-10-01_11; ECS1995-10-01_12; ECS1995-10-01_13; ECS1995-10-01_2; ECS1995-10-01_3; ECS1995-10-01_4; ECS1995-10-01_5; ECS1995-10-01_6; ECS1995-10-01_7; ECS1995-10-01_8; ECS1995-10-01_9; ECS1996-01-04; ECS1996-04-26_1; ECS1996-04-26_2; ECS1996-04-26_3; ECS1996-04-26_4; ECS1996-04-26_5; ECS1996-04-26_6; ECS1996-04-26_7; ECS1996-04-26_8; ECS1996-04-26_9; Event label; GOFLO; Go-Flo bottles; Gomez2004-10-26; Gomez2004-10-30; Gomez2004-11-03; Gomez2004-11-07; Gomez2004-11-11; Gomez2004-11-15; Gomez2004-11-19; Gomez2004-11-23; Gomez2004-11-27; Gomez2004-12-01; Gomez2004-12-05; Gomez2004-12-09; HakuhoMaru2002-12-07; HakuhoMaru2002-12-09; HakuhoMaru2002-12-11; HakuhoMaru2002-12-13; HakuhoMaru2002-12-15; HakuhoMaru2002-12-17; HakuhoMaru2002-12-18; Heterocyst, biomass; Indian Ocean; Iron; Latitude of event; Longitude of event; MAREMIP; MARine Ecosystem Model Intercomparison Project; Measured at sea surface; Meville2002-06-24; Meville2002-06-26; Meville2002-06-28; Meville2002-06-30; Meville2002-07-02; Meville2002-07-03; Meville2002-07-04; Meville2002-07-05; Meville2002-07-06; Meville2002-07-07; Meville2002-07-08; Meville2002-07-11; Meville2002-07-12; Mirai2003-01-15; Mirai2003-01-17; Mirai2003-01-18; Mirai2003-01-20; Mirai2003-01-21; Mirai2003-01-23; Mirai2003-01-24; Mirai2003-01-26; Mirai2003-01-28; MP-6; MP-6_01; MP-6_02; MP-6_03; MP-6_04; MP-6_05; MP-6_06; MP-6_07; MP-6_08; MP-6_09; MP-6_10; MP-6_11; MP-6_12; MP-6_13; MP-6_14; MP-6_15; MP-6_16; MP-6_17; MP-6_19; MP-6_20; MP-6_21; MP-6_22; MP-6_23; MP-9; MP-9_01; MP-9_02; MP-9_03; MP-9_04; MP-9_05; MP-9_06; MP-9_08; MP-9_09; MP-9_10; MP-9_11; MP-9_12; MP-9_13; MP-9_14; MP-9_15; MP-9_16; MP-9_17; MP-9_18; MP-9_19; MP-9_20; MP-9_21; MP-9_22; MP-9_23; MP-9_24; MP-9_25; MP-9_27; MULT; Multiple investigations; MW19950822_21; NA1975-05-25; NA19750526; NA19750527; NA19750528; NA1975-05-29; NA19750530; NA19750531; NA1975-06-01; NA1975-06-02; NA1975-06-03; NA1975-06-04; NA1975-06-05; NA1975-06-06; NewHorizon2003-08-22; NewHorizon2003-08-25; NewHorizon2003-08-26; NewHorizon2003-08-27; NewHorizon2003-08-28; NewHorizon2003-08-30; NewHorizon2003-08-31; NewHorizon2003-09-01; NewHorizon2003-09-03; NewHorizon2003-09-04; NewHorizon2003-09-05; NewHorizon2003-09-07; NewHorizon2003-09-08; NewHorizon2003-09-09; NewHorizon2003-09-11; NewHorizon2003-09-12; NewHorizon2003-09-13; NewHorizon2003-09-14; NIS; Nitrate; North Atlantic; Northeast Atlantic; North Pacific; North Pacific Ocean; Northwest Pacific; NPO1969-08-28; NPO1969-09-01; NPO1969-09-05; NPO1969-09-09; NPO1969-09-11; NPO1969-09-14; NPO1969-09-17; NPO1969-09-19; NPO1969-09-23; NPO1969-09-27; NPO1969-10-01; NPO1969-10-05; NPO1969-10-10; NWP2002-10-21_1; NWP2002-10-21_2; NWP2002-10-21_3; NWP2002-10-21_4; NWP2002-10-21_5; NWP2004-02-11; NWP2004-02-22; NWP2004-05-05; NWP2004-06-26; NWP2004-06-30; NWP2004-07-04; NWP2004-08-07; NWP2004-11-06; NWP2005-03-31; NWP2005-04-22; NWP2005-04-23; NWP2005-04-24; NWP2005-04-25_1; NWP2005-04-25_2; NWP2005-04-26; NWP2005-04-27; NWP2005-04-28; NWP2005-04-29; NWP2005-04-30_1; NWP2005-04-30_2; NWP2005-05-01; NWP2005-08-10; NWP2005-08-15; NWP2005-11-10; NWP2005-12-26; NWP2006-07-03; NWP2006-10-21; NWP2006-12-20; NWP2006-12-25; NWP2007-01-15; OR-I/414_1; OR-I/414_2; OR-I/448; OR-II/034; OR-II/111_1; OR-II/111_2; OR-II/149_1; OR-II/149_2; Phosphate; Richelia, associated species; Richelia, carbon per cell; Richelia abundance, cells; Roger A. Revelle; RV Kilo Moana; Salinity; Sample comment; Sample method; Sargasso Sea; SargassoSea_1973-09-17; SargassoSea_1973-09-19; SargassoSea_1973-09-20; SargassoSea_1973-09-21; SargassoSea_1973-09-28; SargassoSea_1973-09-29; SargassoSea_1973-10-01; SargassoSea_1973-10-02; SargassoSea_1973-10-03; SargassoSea_1974-02-06; SargassoSea_1974-02-08; SargassoSea_1974-02-11; SargassoSea_1974-02-12; SargassoSea_1974-02-13; SargassoSea_1974-02-14; SargassoSea_1974-02-16; SargassoSea_1974-02-17; SargassoSea_1974-02-18; SargassoSea_1974-02-19; SargassoSea_1974-02-20; SargassoSea_1974-02-21; SargassoSea_1974-02-22; SargassoSea_1974-02-26; SargassoSea_1974-02-27; SargassoSea_1974-03-01; SargassoSea_1974-03-02; SargassoSea_1974-03-03; SargassoSea_1974-03-04; SargassoSea_1974-03-05; SargassoSea_1974-08-08; SargassoSea_1974-08-09; SargassoSea_1974-08-10_1; SargassoSea_1974-08-10_2; SargassoSea_1974-08-11; SargassoSea_1974-08-12; SargassoSea_1974-08-13; SargassoSea_1974-08-14; SargassoSea_1974-08-15; SargassoSea_1974-08-16; SargassoSea_1974-08-17; SargassoSea_1974-08-18; SargassoSea_1974-08-19; SargassoSea_1974-08-20; SargassoSea_1974-08-21; Sarmiento de Gamboa; SCS2000-07-04; SCS2000-07-08; SCS2000-07-12; SCS2000-10-05; SCS2000-10-06; SCS2000-10-07; SCS2000-10-08; SCS2000-10-09; SCS2000-10-10; SCS2000-10-11; SCS2000-10-12; SCS2001-03-21; SCS2001-03-22; SCS2001-03-23; SCS2001-03-24; SCS2001-03-25; SCS2001-03-26; SCS2001-03-27; SCS2001-03-28; SCS2001-03-29; SCS2001-03-30; SCS2001-06-28; SCS2001-06-30; SCS2001-07-02; SCS2001-07-04; SCS2001-07-06; SCS2001-10-23; SCS2001-10-25; SCS2001-10-27; SCS2001-10-29; SCS2001-10-31; SCS2002-03-04; SCS2002-03-05; SCS2002-03-06; SCS2002-03-07; SCS2002-03-08; SCS2002-03-09; SCS2002-03-10;
    Type: Dataset
    Format: text/tab-separated-values, 8546 data points
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  • 8
    facet.materialart.
    Unknown
    PANGAEA
    In:  Supplement to: Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012
    Publication Date: 2023-12-18
    Description: The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedented global data set for ecological and biochemical analysis and modeling as well as a clear mandate for compiling additional existing data and for focusing future data gathering efforts on key groups in key areas of the ocean. The present data set presents depth integrated values of diazotrophs nitrogen fixation rates, computed from a collection of source data sets.
    Keywords: 33KB20020923; 33RR20030714; Alis; ALOHA2000-07-26; ALOHA2000-11-30; ALOHA2001-03-21; ALOHA2001-06-14; ALOHA2004-11-28; ALOHA2005-02-02; ALOHA2005-03-05; ALOHA2005-06-15; ALOHA2005-07-16; ALOHA2005-08-14; ALOHA2005-09-09; ALOHA2005-10-08; ALOHA2005-11-16; ALOHA2005-12-13; ALOHA2006-01-25; ALOHA2006-02-15; ALOHA2006-03-10; ALOHA2006-04-01; ALOHA2006-05-26; ALOHA2006-06-13; ALOHA2006-07-12; ALOHA2006-08-08; ALOHA2006-09-15; ALOHA2006-10-19; ALOHA2006-11-08; ALOHA2006-12-09; ALOHA2007-02-06; ALOHA2007-03-20; ALOHA2007-05-03; ALOHA2007-06-09; ALOHA2007-07-07; ALOHA2007-08-02; ALOHA2007-09-02; ALOHA2007-12-20; ALOHA2008-01-28; ALOHA2008-02-23; ALOHA2008-05-27; ALOHA2008-06-25; ALOHA2008-07-26; ALOHA2008-08-17; ALOHA2008-10-11; ALOHA2008-12-01; ALOHA2009-01-21; ALOHA2009-02-18; ALOHA2009-04-29; ALOHA2009-05-28; ALOHA2009-07-04; ALOHA2009-07-25; ALOHA2009-09-26; ALOHA2009-11-05; ALOHA2010-04-08; ALOHA2010-05-20; ALOHA2010-06-10; ALOHA2010-07-10; ALOHA2010-08-09; ALOHA2010-09-05; ALOHA2010-10-05; AMT17/01; AMT17/02; AMT17/03; AMT17/04; AMT17/05; AMT17/06; AMT17/07; AMT17/08; AMT17/09; AMT17/10; Arabian Sea; AT19641122; AT19641123; AT19641202; AT19641203; Atalante20080627; Atalante20080628; Atalante20080704; Atalante20080705; Atalante20080709/1; Atalante20080710; Atalante20080712; Atalante20080713; Atalante20080714; Atlantic; BIOSOPE_EGY; BIOSOPE_GYR; BIOSOPE_HLNC; BIOSOPE_MAR; BIOSOPE_UPW; BIOSOPE04-10-28; BIOSOPE04-10-30; BIOSOPE04-11-03; BIOSOPE04-11-04; BIOSOPE04-11-06; BIOSOPE04-11-07; BIOSOPE04-11-08; BIOSOPE04-11-10; BIOSOPE04-11-12; BIOSOPE04-11-20; BIOSOPE04-11-21; BIOSOPE04-11-23; BIOSOPE04-11-24; BIOSOPE04-11-28; BIOSOPE04-12-01; BIOSOPE04-12-02; BIOSOPE04-12-03; BIOSOPE04-12-04; BIOSOPE04-12-05; Bottle, Niskin; CAIBEX-I; CAIBEX-I_1; CAIBEX-I_2; CAIBEX-I_3; CAIBEX-I_4; CAIBEX-I_5; CAIBEX-I_6; CAIBEX-I_7; CAIBEX-II; CAIBEX-II_01; CAIBEX-II_02; CAIBEX-II_03; CAIBEX-II_04; CAIBEX-II_05; CAIBEX-II_06; CAIBEX-II_07; CAIBEX-II_08; CAIBOX; CAIBOX_01; CAIBOX_02; CAIBOX_03; CAIBOX_04; CAIBOX_05; CAIBOX_06; CAIBOX_07; CAIBOX_08; CAIBOX_09; CAIBOX_10; CAIBOX_11; CAIBOX_12; CAIBOX_13; CAIBOX_14; CAIBOX_15; CAIBOX_16; CAIBOX_17; Calculated; Cape Verde; CATO-I/9; Chlorophyll total, areal concentration; CLIMAX_VII/1973-08-18; CLIMAX_VII/1973-08-27; CLIMAX_VII/1973-08-29; CLIMAX_VII/1973-08-31; CLIMAX_VII/1973-09-02; CLIMAX_VII/1973-09-04; CLIMAX_VII/1973-09-07; CLIMAX_VII/1973-09-09; Cook25_7; CTD/Rosette; CTD-RO; D325_Stn-A-01; D325_Stn-C-01; D325_Stn-D-07; D325_Stn-E-01; D325_Stn-F-07; Date/Time of event; Depth, bottom/max; Depth, top/min; DEPTH, water; Diapalis-3; Diapalis-3_1; Diapalis-3_2; Diapalis-3_3; Diapalis-3_4; Diapalis-4; Diapalis-4_1; Diapalis-4_2; Diapalis-4_3; Diapalis-4_4; Diapalis-5; Diapalis-5_1; Diapalis-5_3; Diapalis-5_4; Diapalis-5_5; Diapalis-6; Diapalis-6_1; Diapalis-6_2; Diapalis-6_3; Diapalis-6_4; Diapalis-6_5; Diapalis-6_6; Diapalis-7; Diapalis-7_1; Diapalis-7_2; Diapalis-7_3; Diapalis-7_4; Diapalis-7_6; Diapalis-7_7; Diapalis-9; Diapalis-9_1; Diapalis-9_2; Diapalis-9_3; Diapalis-9_4; Diapalis-9_5; DIAPAZON_Diapalis-3; DIAPAZON_Diapalis-4; DIAPAZON_Diapalis-5; DIAPAZON_Diapalis-6; DIAPAZON_Diapalis-7; DIAPAZON_Diapalis-9; DYFAMED2003-03-26; DYFAMED2003-03-30; DYFAMED2004-01-25; DYFAMED2004-02-24; DYFAMED2004-04-25; DYFAMED2004-05-27; DYFAMED2004-07-01; DYFAMED2004-07-31; DYFAMED2004-08-31; DYFAMED2004-09-18; DYFAMED2004-10-14; Equatorial Pacific; Event label; GoA_StnA2010-03-18; GOFLO; Go-Flo bottles; Gulf of Aqaba; Gundersen_1; Gundersen_2; Hawaiian Islands, North Central Pacific; Hesperides_03a; Hesperides_05a; Hesperides_06a; Hesperides_07a; Hesperides_08a; Hesperides_12a; Hesperides_13a; Hesperides_14a; Hesperides_17a; Hesperides_18a; Hesperides_19a; Hesperides_20a; Hesperides_21a; Hesperides_23a; Hesperides_24a; Hesperides_25a; Hesperides_26a; Hesperides_27a; Hesperides_28a; Hesperides_29a; Hesperides_30a; Hesperides_31a; Hesperides_32a; Hesperides_33a; Hesperides_34a; Hesperides_36a; Hesperides_37a; Hesperides_38a; Hesperides_39a; Hesperides_40a; Hesperides_41a; Hesperides_42a; Heterocyst, nitrogen fixation rate; Iron; KiloMoana20060609/1; KiloMoana20060609/2; KiloMoana20060821; KiloMoana20060826; KiloMoana20060922; KiloMoana20060923; KiloMoana20060925; KiloMoana20060927; KiloMoana20060930; KiloMoana20061009; Latitude of event; LB2008-09-12; LB2008-09-16; Levantine Basin; Ligurian Sea, Mediterranean; Longitude of event; MAREMIP; MARine Ecosystem Model Intercomparison Project; Measured at sea surface; Mediterranean Sea; Mooring (long time); MOORY; MP-6; MP-6_01; MP-6_02; MP-6_03; MP-6_04; MP-6_05; MP-6_06; MP-6_07; MP-6_08; MP-6_09; MP-6_10; MP-6_11; MP-6_12; MP-6_13; MP-6_14; MP-6_15; MP-6_16; MP-6_18; MP-6_19; MP-6_20; MP-6_21; MP-6_22; MP-6_23; MP-9; MP-9_01; MP-9_02; MP-9_03; MP-9_04; MP-9_05; MP-9_06; MP-9_07; MP-9_09; MP-9_10; MP-9_11; MP-9_12; MP-9_13; MP-9_14; MP-9_15; MP-9_16; MP-9_17; MP-9_18; MP-9_19; MP-9_20; MP-9_21; MP-9_22; MP-9_23; MP-9_24; MP-9_25; MP-9_26; MP-9_27; MR07-01/02; MR07-01/03; MR07-01/04; MR07-01/05; MR07-01/06; MR07-01/07; MR07-01/08; MR07-01/09; MR07-01/10; MR07-01/11; Mulholland_2006-07-01; Mulholland_2006-07-02; Mulholland_2006-07-03; Mulholland_2006-07-04; Mulholland_2006-07-05; Mulholland_2006-07-06; Mulholland_2006-07-07; Mulholland_2006-07-08; Mulholland_2006-07-09; Mulholland_2006-07-10; Mulholland_2006-07-11; Mulholland_2006-07-12; Mulholland_2006-07-13; Mulholland_2006-07-14; Mulholland_2006-10-25; Mulholland_2006-10-26; Mulholland_2006-10-27; Mulholland_2006-10-28; Mulholland_2006-10-29; Mulholland_2006-10-30; Mulholland_2006-10-31; Mulholland_2006-11-01; Mulholland_2006-11-02; Mulholland_2006-11-03; Mulholland_2006-11-04; Mulholland_2006-11-05; Mulholland_2006-11-06; Mulholland_2006-11-07; Mulholland_2006-11-08; Mulholland_2006-11-09; Mulholland_2008-05-03_1; Mulholland_2008-05-04_1; Mulholland_2008-05-05_1; Mulholland_2008-05-05_2; Mulholland_2008-05-06_1; Mulholland_2008-05-07_1; Mulholland_2008-05-10_1; Mulholland_2008-05-11_1; Mulholland_2008-05-12_1; Mulholland_2008-05-13_1; Mulholland_2008-05-14_1; Mulholland_2008-05-15_1; Mulholland_2008-05-16_1; Mulholland_2008-05-17_1; Mulholland_2008-05-18_1; Mulholland_2008-05-19_1; Mulholland_2008-05-20_1; Mulholland_2008-05-21_1; Mulholland_2008-05-22_1; Mulholland_2008-05-24_1; Mulholland_2009-08-17_1; Mulholland_2009-08-18_1; Mulholland_2009-08-18_2; Mulholland_2009-08-19_1; Mulholland_2009-08-19_2; Mulholland_2009-08-20_1; Mulholland_2009-08-20_3; Mulholland_2009-08-21_1; Mulholland_2009-08-21_3; Mulholland_2009-08-22_1; Mulholland_2009-08-22_3; Mulholland_2009-08-23; Mulholland_2009-08-24_1; Mulholland_2009-08-24_3; Mulholland_2009-08-25_3; Mulholland_2009-08-26_3; Mulholland_2009-08-27_2; Mulholland_2009-08-27_3; Mulholland_2009-11-04_2; Mulholland_2009-11-05_1; Mulholland_2009-11-08_1; Mulholland_2009-11-09_3; Mulholland_2009-11-10_3; Mulholland_2009-11-11_1; Mulholland_2009-11-18_1; Mulholland_2009-11-18_3; NA19750526; NA19750527; NA19750528; NA19750530; NA19750531; NIS; Nitrate; Nitrogen fixation rate, integrated per day; Nitrogen fixation rate, whole seawater; North Atlantic; Northeast Atlantic; North Pacific; Pacific; Phosphate; PUMP; Rahav_2009-07-13_1; Rahav_2009-07-14_1; Rahav_2009-07-16_1; Rahav_2009-12-07_1; Rees2004-03-05/01; Rees2004-04-05; Rees2004-05-16; Rees2004-05-19/01; Rees2004-05-21/01; Rees2004-07-05/01; Rees2004-09-05/01; Roger A. Revelle; RV Kilo Moana; Salinity; Sample comment; Sample method; Sargasso Sea; SargassoSea_1973-09-17; SargassoSea_1973-09-19; SargassoSea_1973-09-20; SargassoSea_1973-09-21; SargassoSea_1973-09-28; SargassoSea_1973-09-29; SargassoSea_1973-10-01; SargassoSea_1973-10-02; SargassoSea_1973-10-03; SargassoSea_1974-02-06; SargassoSea_1974-02-08; SargassoSea_1974-02-11; SargassoSea_1974-02-13; SargassoSea_1974-02-14; SargassoSea_1974-02-16; SargassoSea_1974-02-17; SargassoSea_1974-02-18; SargassoSea_1974-02-19; SargassoSea_1974-02-20; SargassoSea_1974-02-21; SargassoSea_1974-02-26;
    Type: Dataset
    Format: text/tab-separated-values, 5926 data points
    Location Call Number Expected Availability
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  • 9
    Publication Date: 2024-03-30
    Description: The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedented global data set for ecological and biochemical analysis and modeling as well as a clear mandate for compiling additional existing data and for focusing future data gathering efforts on key groups in key areas of the ocean. The present collection presents the original data sets used to compile Global distributions of diazotrophs abundance, biomass and nitrogen fixation rates
    Keywords: MAREDAT_Diazotrophs_Collection; MAREMIP; MARine Ecosystem Model Intercomparison Project
    Type: Dataset
    Format: application/zip, 94 datasets
    Location Call Number Expected Availability
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  • 10
    facet.materialart.
    Unknown
    PANGAEA
    In:  Supplement to: Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012
    Publication Date: 2024-03-30
    Description: The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedented global data set for ecological and biochemical analysis and modeling as well as a clear mandate for compiling additional existing data and for focusing future data gathering efforts on key groups in key areas of the ocean. The present data set presents depth integrated values of diazotrophs Gamma-A nifH genes abundance, computed from a collection of source data sets.
    Keywords: 06MT60_5; 06MT60_5/158; 06MT60_5/159; 06MT60_5/161; 06MT60_5/173; 06MT60_5/180; 06MT60_5/181; 06MT60_5/184; 06MT60_5/187; 06MT60_5/188; 06MT60_5/189; 06MT60_5/190; 06MT60_5/192; 06MT60_5/199; ALOHA2002-12-13; ALOHA2002-12-14; ALOHA2005-07-16; ALOHA2005-07-26_01; ALOHA2005-07-26_02; ALOHA2005-07-26_03; ALOHA2005-07-26_04; ALOHA2005-07-26_05; ALOHA2005-07-26_06; ALOHA2005-07-26_07; ALOHA2005-07-26_08; ALOHA2005-08-13; Arabian Sea; Bottle, Niskin; Calculated; Calothrix, abundance expressed in number of nifH gene copies; Calothrix, associated species; Calothrix, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; CD132; CD132 _AMBITION; CD132_AMBITION/1; CD132_AMBITION/2; CD132_AMBITION/3; CD132_AMBITION/4; CD132/1; CD132/2; CD132/3; CD132/4; Charles Darwin; China Sea; Chlorophyll a; CTD, Seabird; CTD/Rosette; CTD-R; CTD-RO; Date/Time of event; Depth, bottom/max; Depth, top/min; DEPTH, water; Diazotrophs, total biomass as carbon; Eastern equatorial Atlantic; EEA2007-06-14_Stn8; EEA2007-06-15_Stn9; Event label; Foster2008-07-12; Foster2008-07-14; Foster2008-07-15; Foster2008-07-18; Hawaiian Islands, North Central Pacific; Heterocyst, biomass; In situ pump; Iron; ISP; Latitude of event; Longitude of event; M55_30a; M55_36a; M55_38a; M55_44a; M55_45; M55_48a; M55/1; M60/5; M60/5_158; M60/5_159; M60/5_161; M60/5_163a; M60/5_173; M60/5_180; M60/5_181; M60/5_184; M60/5_187; M60/5_188; M60/5_189; M60/5_190; M60/5_192; M60/5_199; MAREMIP; MARine Ecosystem Model Intercomparison Project; Measured at sea surface; Meteor (1986); NIS; Nitrate; North Atlantic sub-tropical gyre; North Pacific; Phosphate; Proteobacteria, abundance expressed in number of nifH gene copies; Richelia, abundance expressed in number of nifH gene copies; Richelia, associated species; Richelia, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Salinity; Sample comment; Sample method; SCS2009-08-10; SCS2009-08-15; SCS2009-08-20; SCS2009-08-25; SO187/2; SO187/2_33-1; SO187/2_44-1; SO187/2_45-1-1a; SO187/2_45-4; SO187/2_46-1; SO187/2_48-1; SO187/2_53-1a; SO187/2_54-2; Sonne; South China Sea; South Pacific Ocean; SPO2003-03-17; SPO2003-03-18; SPO2003-03-19; SPO2003-03-20; SPO2003-03-21; SPO2003-03-22-1; SPO2003-03-22-2; SPO2003-03-24; SPO2003-03-25; SPO2003-03-28; SPO2003-03-29; SPO2003-03-30; SPO2003-03-31; SPO2003-04-02; SPO2003-04-03; SPO2003-04-05; SPO2003-04-06; SPO2003-04-07; SPO2003-04-08; SPO2003-04-09; SPO2003-04-10; SPO2003-04-12; SPO2003-04-13; SW2006-06-22; SW2006-06-23; SW2006-06-27; SW2006-06-28; SW2006-06-29; SW2006-06-30; SW2006-07-01; SW2006-07-03; SW2006-07-04; SW2006-07-06; SW2006-07-07; SW2006-07-12; SW2006-07-13; SW2006-07-14_1; SW2006-07-14_2; SW2006-07-15; SW2006-07-17; SW2006-07-19; SW2006-07-20; SW2006-07-21; Temperature, water; Trichodesmium, abundance expressed in number of nifH gene copies; Trichodesmium, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Trichodesmium, biomass as carbon; Tropical Atlantic; Unicellular cyanobacteria, biomass; Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Unicellular cyanobacteria-C, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-C, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Uniform resource locator/link to source data file; VIETNAM; Water sample; WesternFlyer2005-10-25; Western tropical north Atlantic; WS; WTNA2003-04-24_01; WTNA2003-04-26; WTNA2003-05-01; WTNA2003-05-04; WTNA2003-05-11; WTNA2003-05-12; WTNA2003-05-13; WTNA2003-05-14; WTNA2003-05-18; WTNA2003-05-20
    Type: Dataset
    Format: text/tab-separated-values, 2032 data points
    Location Call Number Expected Availability
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