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  • 1
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    Unknown
    PANGAEA
    In:  Supplement to: Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73, https://doi.org/10.5194/essd-4-47-2012
    Publication Date: 2023-03-27
    Description: The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedented global data set for ecological and biochemical analysis and modeling as well as a clear mandate for compiling additional existing data and for focusing future data gathering efforts on key groups in key areas of the ocean. This is a gridded data product about diazotrophic organisms . There are 6 variables. Each variable is gridded on a dimension of 360 (longitude) * 180 (latitude) * 33 (depth) * 12 (month). The first group of 3 variables are: (1) number of biomass observations, (2) biomass, and (3) special nifH-gene-based biomass. The second group of 3 variables is same as the first group except that it only grids non-zero data. We have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling more than 11,000 direct field measurements including 3 sub-databases: (1) nitrogen fixation rates, (2) cyanobacterial diazotroph abundances from cell counts and (3) cyanobacterial diazotroph abundances from qPCR assays targeting nifH genes. Biomass conversion factors are estimated based on cell sizes to convert abundance data to diazotrophic biomass. Data are assigned to 3 groups including Trichodesmium, unicellular diazotrophic cyanobacteria (group A, B and C when applicable) and heterocystous cyanobacteria (Richelia and Calothrix). Total nitrogen fixation rates and diazotrophic biomass are calculated by summing the values from all the groups. Some of nitrogen fixation rates are whole seawater measurements and are used as total nitrogen fixation rates. Both volumetric and depth-integrated values were reported. Depth-integrated values are also calculated for those vertical profiles with values at 3 or more depths.
    Keywords: MAREMIP; MARine Ecosystem Model Intercomparison Project
    Type: Dataset
    Format: application/zip, 1.7 MBytes
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  • 2
    Publication Date: 2023-01-30
    Keywords: 15N2-tracer method; ALOHA2005-06-15; ALOHA2005-07-16; ALOHA2005-08-14; ALOHA2005-09-09; ALOHA2005-10-08; ALOHA2005-11-16; ALOHA2005-12-13; ALOHA2006-01-25; ALOHA2006-02-15; ALOHA2006-03-10; ALOHA2006-04-01; ALOHA2006-05-26; ALOHA2006-06-13; ALOHA2006-07-12; ALOHA2006-08-08; ALOHA2006-09-15; ALOHA2006-10-19; ALOHA2006-11-08; ALOHA2006-12-09; ALOHA2007-02-06; ALOHA2007-03-20; ALOHA2007-05-03; ALOHA2007-06-09; ALOHA2007-07-07; ALOHA2007-08-02; ALOHA2007-09-02; Calculated after Luo et al. (2012); Date/Time of event; DEPTH, water; Event label; Hawaiian Islands, North Central Pacific; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Nitrogen fixation rate, total; Nitrogen fixation rate, whole seawater
    Type: Dataset
    Format: text/tab-separated-values, 364 data points
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  • 3
    Publication Date: 2023-01-30
    Keywords: ALOHA_Station; Calculated after Luo et al. (2012); DATE/TIME; DEPTH, water; Event label; Hawaiian Islands, North Central Pacific; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Moana Wave; Nitrogen fixation rate, total; Nitrogen fixation rate, whole seawater; OOS; Open ocean station; ST-2
    Type: Dataset
    Format: text/tab-separated-values, 300 data points
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  • 4
    Publication Date: 2023-02-12
    Keywords: ALOHA2002-12-14; Calculated after Luo et al. (2012); CIII, abundance expressed in number of nifH gene copies; Comment; Date/Time of event; DEPTH, water; Diazotrophs, total biomass as carbon; Event label; Fluorescence-based quantitative real-time PCR (qPCR); Hawaiian Islands, North Central Pacific; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Trichodesmium, abundance expressed in number of nifH gene copies; Trichodesmium, biomass as carbon; Trichodesmium abundance, total; Unicellular cyanobacteria, biomass; Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies
    Type: Dataset
    Format: text/tab-separated-values, 75 data points
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  • 5
    Publication Date: 2023-02-12
    Keywords: ALOHA2004-11-28; ALOHA2005-02-02; ALOHA2005-03-05; Calculated after Luo et al. (2012); Date/Time of event; DEPTH, water; Event label; Hawaiian Islands, North Central Pacific; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Nitrogen Fixation (C2H2 Reduction); Nitrogen fixation rate, total; Nitrogen fixation rate, whole seawater; Trichodesmium, nitrogen fixation rate; Unicellular cyanobacteria, nitrogen fixation rate
    Type: Dataset
    Format: text/tab-separated-values, 48 data points
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  • 6
    Publication Date: 2023-02-26
    Keywords: ALOHA2002-12-13; ALOHA2002-12-14; ALOHA2002-12-15; Calculated after Luo et al. (2012); Date/Time of event; DEPTH, water; Diazotrophs, total biomass as carbon; Event label; Fluorescence-based quantitative real-time PCR (qPCR); Hawaiian Islands, North Central Pacific; Heterocyst, biomass; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Richelia, abundance expressed in number of nifH gene copies; Richelia, associated species; Richelia, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Sample comment; Trichodesmium, abundance expressed in number of nifH gene copies; Trichodesmium, biomass as carbon; Trichodesmium abundance, total; Unicellular cyanobacteria, biomass; Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies
    Type: Dataset
    Format: text/tab-separated-values, 341 data points
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  • 7
    Publication Date: 2023-05-12
    Keywords: 15N2-tracer method; ALOHA_Station; Calculated; Date; Hawaiian Islands, North Central Pacific; Moana Wave; Nitrogen fixation rate; Nitrogen fixation rate, standard deviation; Number of observations; OOS; Open ocean station; Phosphorus; ST-2
    Type: Dataset
    Format: text/tab-separated-values, 69 data points
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  • 8
    Publication Date: 2023-05-12
    Keywords: 15N2-tracer method; ALOHA_Station; Calculated; Date; Depth, bottom/max; Depth, top/min; DEPTH, water; Hawaiian Islands, North Central Pacific; Moana Wave; Nitrogen fixation rate; Nitrogen fixation rate, integrated per day; Nitrogen fixation rate, standard deviation; Number of observations; OOS; Open ocean station; Percentage; ST-2
    Type: Dataset
    Format: text/tab-separated-values, 124 data points
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  • 9
    Publication Date: 2023-11-15
    Keywords: Calculated after Luo et al. (2012); CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Event label; Hawaiian Islands, North Central Pacific; HI2005-07-26/1; HI2005-07-26/2; HI2005-07-26/3; HI2005-07-26/4; HI2005-07-26/5; HI2005-07-26/6; HI2005-07-26/7; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Nitrogen Fixation (C2H2 Reduction); Nitrogen fixation rate, total; Nitrogen fixation rate, whole seawater
    Type: Dataset
    Format: text/tab-separated-values, 14 data points
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  • 10
    Publication Date: 2023-11-15
    Keywords: ALOHA2005-07-26_01; ALOHA2005-07-26_02; ALOHA2005-07-26_03; ALOHA2005-07-26_04; ALOHA2005-07-26_05; ALOHA2005-07-26_06; ALOHA2005-07-26_07; ALOHA2005-07-26_08; Calculated after Luo et al. (2012); CTD/Rosette; CTD-RO; Date/Time of event; DEPTH, water; Diazotrophs, total biomass as carbon; Event label; Fluorescence-based quantitative real-time PCR (qPCR); Hawaiian Islands, North Central Pacific; Heterocyst, biomass; Latitude of event; Longitude of event; MAREDAT_Diazotrophs_Collection; Richelia, abundance expressed in number of nifH gene copies; Richelia, associated species; Richelia, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Trichodesmium, abundance expressed in number of nifH gene copies; Trichodesmium, biomass as carbon; Trichodesmium abundance, total; Unicellular cyanobacteria, biomass; Unicellular cyanobacteria-A, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-A, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies; Unicellular cyanobacteria-B, abundance expressed in number of nifH gene copies; Unicellular cyanobacteria-B, biological trait, ratio expressed in mass of carbon per amount of nifH gene copies
    Type: Dataset
    Format: text/tab-separated-values, 104 data points
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