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  • Articles  (67)
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  • 11
    Publication Date: 2021-07-16
    Description: Goals: Determine of barcode of DNA in green tiger prawn, Penaeus semisulcatus, in the Gen bank of the species. Material and methods: In these study 30 specimens of Penaeus semisulcatus from each region in the Persian Gulf and Sea of Oman were sampled and preserved in ethanol 96%. The total DNA was extracted, COI gene was first amplified and then sequenced for each species. Finally the collected data were analyzed with the specific phylogenetic software. Result and discussion: Molecular analysis revealed some degree of interpopulation differences within two areas. Also for population study molecular data of species Penaeus semisulcatus were analysed base on COI RFLP and 16SrRNA sequences respectively. The results indicated that COI gen is a good marker for shrimp species differentiation that would be helpful to protect shrimp species.
    Keywords: Biology ; Iran ; Persian Gulf ; Oman Sea ; Genetic ; Molecular ; Population ; Cytochrome oxidized COI ; Penaeus semisulcatus
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 24
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  • 12
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25726 | 18721 | 2018-10-10 10:00:38 | 25726 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: Today, due to population increase and anthropogenic activities together with sewage and agricultural waste water entrance, aquatic ecosystems have been exposed to high pollutions. Phytoplankton is a group of water floating algae that have crucial roles in providing nutrients and oxygen for other organisms, nitrogen and CO_2 fixation. These organisms are considered as primary producers in aquatic ecosystems. They are found in various water habitats all over the world, affected by environmental variables such as pH, light and temperature and used for determination of water pollution degree and quality. Phytoplankton composition and density may be used as a complementary indicator of water trophy state. Phytoplankton communities indicate short and long term variations of aquatic systems. One of the most obvious problems in freshwater ecosystems is algal bloom or over growth of some blue- green algae which can decrease oxygen, and in some cases bring about toxin excretion and fish and human kills. In addition, many of bloom forming cyanobacteria produce secondary metabolites which can create sever poisoning in mammals including human. The genus Microcystis is a key bloom forming cyanobacteria in aquatic ecosystems. Populations of this genus form intense blooms in water bodies that has attracted more attentions in recent years. Various species of this alga have been distributed in stagnant and eutroph freshwater around the world. Microcystis has been defined by genetic criteria such as 16S rRNA molecular sequencing, but its classification in levels lower than genus is unclear and the presence of its classical morphospecies is doubtful. However, this genus creates sever blooms in eutrophic waters all over the world and many species produce toxins. Therefore, identification of its natural diversity in the levels lower than genus has high importance. However, several characteristics of Microcystis morphotypes which are classified a traditional species, actually are present and observed in different regions of the world. At present, they can be considered as morphospecies that belong to one genotype and have similar ecology. These traditional species with definite phenotypic and ecophysiological characteristics cannot be eliminated completely. Their identification is essential for ecological and ecotoxicological studies. Interistic transcribed separator (ITS) gene is a section of genome which is located between 16s rRNA and 23s genes. This gene has more heterogeneity than 16s rRNA; so it is used to identify many genera of cyanobacteria. The Aras reservoir located in the north-west of Iran plays important roles as fisheries, drinking and agricultural water supply and recreational activities in the region. The present thesis was undertaken to: analyze the Microcystis sp. populations by molecular methods such as ITS in Aras Reservoir. Samples for molecular analysis were collected from 10 sampling sites on 18 August 2013. Samples for molecular study of Microcystis were collected from two different depths (surface and 1 m depth) and transferred to laboratory without any treatments. Microscopic images of Microcystis were sent to professor Komárek and was confirmed.
    Keywords: Biology ; Iran ; Aras dam ; Molecular ; Barcoding ; Microcystis aeruginosa ; ITS-2 ; Gene ; Population ; Aquatic ; 16S rRNA
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 44
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  • 13
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25404 | 18721 | 2018-09-20 12:28:18 | 25404 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: Population dynamics parameters and exploitation ratio of Jinga Shrimp, Metapenaeus affinis were studied from Sep 2011 to Dec 2011 and data collected from two landing places (Hendijan and Lifee-Bosif). During the project, more than 2200 specimens of jinga shrimp were measured. The mean value of length for the male and female were calculated as 9.8±0.86, 10.24±1.18 and mean value of weight for the male and female was as 6.730±1.64, 8.14±2.90 respectively. The length-weight relation were calculated as TW=0.024TL2.24 (n=1084,R^2=0.71) for males, TW=0.011TL2.80 (n=1081,R^2= 0.81) for females also we found significant different level length-weight relation in P〈0.05. The growth parameters of von Bertalanffy equation were as, L_∞: 14.73 and K: 1.1 and t0: -0.02. The estimated valve of total mortality, natural mortality, fishing mortality and exploitation ratio is Z: 4.35, M: 1.68, F: 2.67, E: 0.61 respectively. By using method analyses knife-edge selection, relative yield per recruitment (Y'/R) :0.014, relative biomass per recruitment, (B'/R) :0.085., Exploitation ratio maximum sustainable yield, Emax : 0.38; biological reference points for Jinga Shrimp stock was calculated. MSY and fmsy value was 600T and 46100day respectively. Result in this study showed exploitation ratio Jinga Shrimp stock is over fishing and decreases exploitation ratio proposed.
    Keywords: Aquaculture ; Iran ; Khuzestan province ; Jinga Shrimp ; Population ; Dynamics ; Exploitation ; Tiger tooth Croaker ; Otolithes ruber ; Metapenaeus affinis ; Population ; Male ; Female ; Mortality ; Coastal waters
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 202
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  • 14
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    Iranian Fisheries Science Research Institute | Tehran, Iran
    In:  http://aquaticcommons.org/id/eprint/25157 | 18721 | 2018-08-26 17:12:28 | 25157 | Iranian Fisheries Science Research Institute
    Publication Date: 2021-07-16
    Description: The project “Stock Assessment of Zobaidy, Pampus argenteus, in the North of Persian Gulf” started in April 2003 and completed by the end of April 2006 as a cooperative research project to assess the valuable stock of zobaidy shared between Kuwait and Iran in the North of Persian Gulf. The main objectives were to investigate and determine the basic biological parameters, the standing biomass, seasonal abundance, and the impact of regional fishery activities. These studies are necessary to recommend practical management policies and measures for long-term sustainability of the zobaidy stock. The sampling of fisheries data (catch, effort, fish length distributions, and biological data) was started in May 2003 and ended December 2006. Monthly length frequencies data were collected from both the drift gill net and shrimp trawl fisheries. Age determination was based on otolith sectioning, polishing, etching, and staining method. The age groups ranged from 0 to 10 yrs but the dominant age groups were 1-3 years and the estimated parameters for both sexes were L_∞ = 32.0-36.0 cm FL and K = 0.26-0.30 yr^-1, females grow faster than males. Sea survey on board of two dhow boats was carried out using swept area method. Higher abundance was always obtained in Kuwait Bay rather than the other areas surveyed in Kuwait and Khuzestan waters. The total estimated stock biomass in the surveyed areas varied from 42 t in January 2004 to 2,633 t in November 2004, while the Iranian biomass varied from as low as 19 t in October 2005 to 295 t in November 2003. The data indicated that Ras Al-Gaid, Bubiyan Island is the main nursery area in Kuwait waters, while Lifah, Busaif, and Bahrakan are important nursery areas in the Khuzestan waters. Kuwait Bay and Khor Musa are considered important spawning grounds and should be protected. Yield per recruit analysis showed that higher yield could be gained with increasing fish effort, which is not recommended under the present status of high exploitation rate. In contrast, virtual population analysis indicated that future catches will reduce if the fishery continues with present level fishing effort. A reduction of 50% would be required to maintain the present level of catches as well as to enhance the stock biomass. Formulation of a joint advisory management committee would be advisable approach to manage and monitor the zobaidy stock in the region. This will need commitment from the three countries in the region for data collection on regular basis on length frequency, statistics, and biological data. Copepods with high occurence of 64% - 88% is considered as the main item in the Pomfret fish, while jelly fish and other decapods crustaceans are considered as minor items. Observation of pre- flexion stage larvae of pampus genus among the specimens collected from Khuzestan coast water could be considered as an evidence for the spawning of this fish in this region. The occurrence of pampus larvae in Khuzestan coast during the months of June to October has been reported for several times. Examination of 101 specimens (38 from Kuwait, 63 from Iran) for molecular survey does not show any significant differences between Kuwait and Iran water stocks for this fish, so it is possible to hypothesize a unit population for zobidy stock in Persian Gulf and Oman Sea as whole.
    Keywords: Fisheries ; Iran ; Persian Gulf ; Kuwait Bay ; Khuzestan Province ; Pampus argenteus ; Zobaidy ; Stock assessment ; Growth ; Food ; Molecular study ; Biomass ; Fishery ; Sampling ; Survey ; Population
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
    Format: application/pdf
    Format: 146
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  • 15
    Publication Date: 2021-05-19
    Description: This project has done with the collaboration of Bnyad mostazafan (Ran agriculture and livestock Co.) with goal of increasing efficiency of warm water fishes( Chinese Carps) production. The fish were purchased from China (B. G.) in two parts in Jun 2014. The fish then transferred and quarantined to the ponds in Aghili’s farm In Azadshar using container trucks. The biological parameters of fish such as growth rate were measured during the experiment. The growth rate were obtained 9, 16, 16 and 14% for common carp, big head, silver carp and grass carp, respectively. The result shows that production of experimental ponds (ponds 2 and 4) were obtained 3473 kg/ha while the control ponds produced 2700kg/ha 1n 1393. In general the production were increased 31% when comparing with average of local production and raised 26% when comparing with average production of the entire country in 1393. In this study showed that by importing the F1 generation of Chinese carp, it can expected that production will be increased to 1.5 times of current carrying capacity as long as using aeration system and appropriate management.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Survey ; Carp ; Species ; Genetic ; Diversity ; Population
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 70pp.
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  • 16
    Publication Date: 2021-05-19
    Description: Barcodes are short segments of DNA that can be used to uniquely identify an unknown specimen to species, particularly when diagnostic morphological features are absent. These sequences could offer a new forensic tool in plant and animal conservation especially for endangered species. Ideally, barcodes could be used to positively identify illegally obtained material even in cases where diagnostic features have been purposefully removed or to release confiscated organisms into the proper breeding population. In the present study molecular data were used besides the morphological ones to introduce a specific barcode for six selected species of Shrimp. Based on the previous phylogenetics study, it has been proved that the mitochondrial COI gene in crustacean is a good discriminative marker at both inter- and intra-specific levels. In this regard, six species of shrimp (Fenoro penaeus indicus, Fenoro penaeus merguensis, penaeus semisulcatus, Metapenaeus affinis, Marsupenaeus japonicas, Fenoro penaeus penicillatus were collected from the Persian Gulf and Oman sea. After identification, the total DNA was extracted; COI gene was first amplified and then sequenced for each species. Finally the collected data were analyzed with the specific phylogenetic software. Molecular analysis revealed some degree of interpopulation differences but six good species were recognizable based on COI sequences. Also for population study molecular data of two species Penaeus semisulcatus and Metapenaeus affinis were analysed base on COI RFLP and 16SrRNA sequences respectively. The results would be helpful to protect shrimp species.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Commercial ; Morphological ; Population ; Genetic ; Shrimp ; Species ; DNA barcoding ; Partial sequencing ; mtDNA ; Molecular method ; PCR ; Fenoro penaeus indicus ; Fenoro penaeus merguensis ; Penaeus Semisulcatus ; Metapenaeus affinis ; Marsupenaeus japonicas ; Fenoro penaeus penicillatus
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 74pp.
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  • 17
    Publication Date: 2021-05-19
    Description: The fishery stocks of most commercial aquatic stocks in the world have shown declining trends in the past two decades. Several factors have been responsible for the decline of stocks the most important of which over fishing and over-exploitation, pollution, loss of natural habitats and natural spawning grounds, construction of dams and bridges across the important rivers which restrict the migratory routes of spawners, decrease in natural reproduction and rehabilitation of stocks through artificial breeding programs. Over-exploitation of stocks and pollution directly affect decreasing stocks in an ecosystem. Not differentiating between different populations and stocks of a species found distributed in an aquatic ecosystem is considered one of the main factors which causes the depletion of stocks in most ecosystems in the world. In most cases this is because genetic variations in aquatic stocks in the wild are not taken into consideration. Six species of sturgeons are found living in the Caspian Sea and its drainage basin which produce more than 85-90% of the world caviar. The Persian sturgeon (Acipenser persicus) and the stellate sturgeon (Acipenser stellatus) are the main sturgeon species of the Caspian Sea. The Persian sturgeon is mainly found in the south Caspian Sea while the stellate sturgeon stocks are considered shared stocks by the five Caspian littoral states. Due to over fishing in the past two decades the legal catch figures for sturgeon stocks in the Caspian Sea dropped from 28500 tons in 1985 to less than 1500 tons in 2004. Similarly caviar production also dropped from 3000 tons to 110 tons in 2005. With regard to the severe reduction in sturgeon stocks it is necessary to take essential steps before these valuable species are totally wiped out. The fisheries management of the five Caspian littoral states should focus their efforts on identifying the different populations and stocks found in the Caspian Sea. Concerted measures should be taken to study the distribution and biomass of the different populations in order to develop a scientific solution for the sustainable use of these endangered species and to secure the long term conservation of sturgeon stocks. The aim of present study was to evaluate the genetic structure of the population of two species Acipenser persicus and Acipenser stellatus and to develop molecular markers to identify and differentiate different populations of these two species.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Commercial ; Population ; Genetic ; Persian Sturgeon ; Acipencer persicus ; Stellate Sturgeon ; Acipencer stellatus ; Microsatellite markers ; Fishery ; Pollution ; Spawning ; Species ; Aquatic Ecosystem ; Genetic ; Molecular
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 70pp.
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  • 18
    Publication Date: 2021-05-19
    Description: The population genetic structure of five Caspian Sea sturgeon species was investigated. Totally 1121 samples of caudal and unault's fin tissue of the sturgeons (Acipenser persicus, A. gueldenstaedtii, A. stellatus, A. nudiventris and Huso huso) were collected from the Volga River (Russia), Ural River (Kazakhstan), Kura River (Azerbaijan), Sepidrud River and the coastline of the south Caspian in the Iranian waters as well as from the sampling stations selected for the marine survey for sturgeon stock assessment in the Caspian Sea. All samples were stored in 96% ethyl alcohol and transferred to the genetic laboratory of the International Sturgeon Research Institute. Genomic DNA was extracted using phenol-chloroform method. The quality and quantity of DNA was assessed by Agarose gel (1%) electrophoresis and spectrophotometry. The population genetic structure of Ship and Persian sturgeon was studied using both PCR-RFLP (D-loop and ND5/6 gene) and microsatellite technique and that of H. huso, A. stellatus and A. persicus were studied using microsatellite technique. After amplification of genes using PCR, the RFLP technique was used to digest mtDNA using restriction enzyme. The PCR products were electrophoresed on 6% sequencing polyacrylamide gels followed by silver nitrate staining. Data for PCR-RFLP were analyzed using REAP program and those from microsatellite technique were analyzed using Gene Alex. Population genetic parameters including allele frequency, expected and observed heterozygosity, effective allele, Shannon's index were determined. Genetic identity and distance were calculated following Nei criteria and Hardy Weinberg equilibrium was tested based on X2 and analysis of molecular variance (AMOVA) using Reap and Gen Alex at 99% confidence limit. Phylogenetic relationship was determined and drawn using TFPGA program. The population genetic structure and genetic diversity of the 1121 sturgeon specimens were determined. Three independent populations were identified for Acipenser persicus (two populations in the south Caspian in the Iranian waters and one in the north Caspian). Three independent populations were identified for A. gueldenstaedtii (Volga, Ural and South Caspian populations) using the microsatellite technique. Population genetic structure using PCR-RFLP revealed no genetic differentiation among the A. gueldenstaedtii specimens studied from the different regions using ND5/6 gene, while two populations (Ural and south Caspian populations) were detected for this species with the same technique using D-loop genes. Four independent populations (Volga, Ural, Kura and Sepidrud populations) were reported for A. stellatus using the microsatellite technique and four more populations which most probably belong to the autumn and spring races of the above mentioned independent populations were identified for this species. The present study also identified two populations for H. huso; The North Caspian population (in Volga and Ural Rivers) and The South Caspian population (in Golestan and Guilan regions) which were significantly different from each other (P〈0.01). The genetic population structure of A. nudiventris was studied using the microsatellite and PCR-RFLP techniques which revealed two populations for this species one in the Ural River and the other in the Sepidrud River (South Caspian). Comparison of the ND5/6 and D-loop genes studies in Russian sturgeon revealed that the D-loop gene is better than the ND5/6 genes in population's differentiation and is therefore strongly recommended for population genetic studies on sturgeons in the Caspian Sea. Genetic diversity studied using microsatellite technique was higher and more accurate as compared to that using RFLP. Nevertheless the RFLP technique was able to introduce molecular markers for the population’s species pacific identification. On developing suitable primers these studies can be speeded up and the cost of such studies can be cut down. However the drawback in using microsatellite technique for population genetic studies is that it cannot introduce a molecular marker for the identification of populations. The present study was able to introduce molecular markers to differentiate the ship sturgeon population in the south Caspian from that in the Ural River using the PCR-RFLP technique Based on the results obtained it is strongly recommended that all activities related to restocking and rehabilitation of sturgeon stocks in Iran be conducted on the basis of genetic principles. Also serious and immediate measures should be taken for the restoration and conservation of rare population of native species of Iran particularly in the Sepidrud region using genetic markers before they are become extinct.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Assessment ; Sturgeons ; Population ; Genetic ; PCR-RFLP ; Microsatellite ; Species ; Samples ; Tissue ; Acipenser persicus ; A. gueldenstaedtii ; A. stellatus ; A. nudiventris ; Huso huso ; Survey
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 329pp.
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  • 19
    Publication Date: 2021-05-19
    Description: The two groups of grass carp, have been propagated in North and South fish farms and then the larvae were transferring to Abziroshd and culture fish farm of Mazandaran. The fingerling at eight weight classes of 2 to 500 gram were investigated morphologically and some morphometric and meristic were compared. The South grass carp was significant difference (P〈0.05) with the North, in case of weight with the same length, number of vertebral and gill raker. The coefficient of variance (CV) of meristic characters of South Grass carp was in the range of 1.2 to 9.8 while in Mazandaran grass carp 2.8 to 8.6. This CV illustrate the low variance in both population. This research study showed that the two stocks can be regard as difference races from one ancestor.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Meristic ; Morphometric ; Grass Carp ; Population ; Investigation ; Survival rate ; Larvae ; Ctenopharyngodon idella
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 33pp.
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  • 20
    Publication Date: 2021-05-19
    Description: Trace elements incorporated into growing surface of the fish otoliths. It reflects the physical and chemical characteristics of the ambient water. Since otoliths grow continuously without re-absorption throughout the life of the fish, fish population growing up in different elemental composition. Trace element concentration in fish otoliths was analyzed by proton induced X-ray emission (PIXE). Otoliths were collected from Rutilus rutilus, during 1999-2000 in the eastern part of Caspian Sea. Ca, K, Sri Cu, Zn and Br in the otothis can be detected by using PIXE our results inform K, Sr, Fe, Zn as marker of this study. Therefore, in the two different conditions, separate 'age classes and without separate age classes, Astara and Turkmen regions were discriminated. Comparison of mean age in the different area show, deference of mean age is significant in the Astara and Turkmen.
    Description: Iranian Fisheries Science Research Institute
    Description: Published
    Keywords: Physical ; Chemical ; Stock discrimination ; Rutilus rutilus ; Otoliths ; Population
    Repository Name: AquaDocs
    Type: Report , Refereed
    Format: 77pp.
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