ALBERT

Notes: The C3 halophyte Suaeda salsa L. grown under the high concentration of NaCl (200 mM) was used to investigate the role of the hydrogen peroxide (H2O2)-scavenging system [catalase, ascorbate peroxidase, glutathione reductase (GR), ascorbic acid, and glutathione (GSH)] in removal of reactive oxygen species. The activity of catalase (CAT, EC 1.11.1.6), ascorbate peroxidase (APX, EC 1.11.1.11), and GR (EC 1.6.4.2) increased significantly after 7 days of NaCl treatment. The isoform patterns of CAT and GR were not affected, but the staining intensities were significantly increased by NaCl treatment. Activities of both the thylakoid-bound APX or GR and stromal APX (S-APX) or GR in the chloroplasts were markedly enhanced under high salinity. Fifty percent of APX in the chloroplasts is thylakoid-bound APX. S-APX and GR activity represented about 74–78 and 64–71% of the total soluble leaf APX and GR activity, respectively. Salt treatment increased the contents of ascorbic acid and GSH. By contrast, a decreased content of H2O2 was found in the leaves of NaCl-treated S. salsa. The level of membrane lipid peroxidation decreased slightly after NaCl treatment. The plants grew well with high rate of net photosynthesis under high salinity. These data suggest that upregulation of the H2O2-scavenging system in plant cells, especially in the chloroplasts, is at least one component of the tolerance adaptations of halophytes to high salinity.

Notes: The photosynthetic performance of the cyanobacterium Synechocystis sp. PCC 6803 exposed to intermittent light was studied by measuring oxygen evolution, respiration and the fluorescence parameters for maximum efficiency of excitation energy capture by photosystem II (PSII) reaction centres (Fv/Fm), PSII quantum yield (ΔF/Fm1) and non-photochemical quenching (NPQ). Cultures were pre-acclimated to constant light conditions. Block and sinusoidal light regimes were tested using four photon-flux densities (PFDs) applied in light/dark intervals of 1:1, 5:5 and 10:10 min. Light use was higher under the sinusoidal light regime compared with the block regime. The accumulated gross photosynthesis of the cyanobacterium was lower under intermittent light conditions compared with predictions from the photosynthesis-irradiance curve (PI curve). The respiration rates were similar for all light/dark intervals tested. However, the respiration slightly increased with increasing oxygen production for both block and sinusoidal light regime. NPQ, ΔF/Fm′ and Fv/Fm depended on the PFD rather than on the duration of the light/dark intervals tested, and there was no detected influence of the two applied light regimes.

Notes: Fructose analog, psicose, and glucose analog, mannose, inhibited root growth of lettuce seedlings. Psicose is phosphorylated by hexokinase and fructokinase (EC 2.7.1.4) to psicose-6-phosphate with no known capacity for further metabolism. Mannose is phosphorylated by hexokinase (EC 2.7.1.1) to mannose-6-phosphate which is further metabolized very slowly. Hexokinase is known to have a sugar-sensing function and possibly triggers a signal cascade resulting in changes of several gene expressions. It was determined, compared with the behaviour of mannose, whether psicose inhibits the root growth through this system. The addition of phosphate into the growth medium of lettuce seedlings did not affect the inhibition by psicose and mannose, and both sugars did not reduce adenosine triphosphate (ATP) level in the roots, suggesting that the inhibition is not due to phosphate starvation and ATP depletion. The inhibiting effects of psicose and mannose were overcome by adding sucrose into the medium, which suggests that the inhibition is not caused by accumulation of psicose-6-phosphate or mannose-6-phosphate in the seedlings. Mannoheptulose, a specific competitive inhibitor of hexokinase, defeated the mannose-induced inhibiting but was not able to relieve the psicose-induced inhibition. Thus, the phosphorylation of mannose by hexokinase may trigger a signal cascade resulting in the growth inhibition of lettuce roots, which is consistent with the hypothesis established in Arabidopsis. However, psicose cannot inhibit the growth of lettuce roots via a hexokinase-mediated pathway, and the phosphorylation of psicose by fructokinase might trigger a hexokinase-independent signal cascade resulting in the growth inhibition.

Notes: The pools of photoprotective molecules respond to changes in the environmental conditions and sometimes to leaf ageing. We asked to what extent both factors contribute to the contents of α-tocopherol and xanthophyll cycle [V + A + Z (VAZ)] pigments. To address this question, we used boxtree (Buxus sempervirens) as model species because its leaves are long-lived and evergreen and are subjected to a succession of different stress conditions during their lifespan. In three age classes of sun and shade leaves of this species, seasonal changes in photoprotective compounds were followed during 15 months and a leaf age interval of 40 months was covered. As could be expected, VAZ and α-tocopherol pools increased in parallel during stress periods (summer and winter), but only VAZ recovered to the initial pools once stress disappeared. As a result, the basal α-tocopherol level increased linearly in a time-dependent manner that was also higher in sun leaves of this species when compared with shade leaves, and in fact, the rate of tocopherol increase was directly proportional to irradiance in another evergreen (Laurus nobilis). To study whether light dependency of tocopherol accumulation is observed in other species, we performed a literature survey that revealed that this age-dependent tocopherol increase was significant in sun leaves from 65% of the species for which age-dependent tocopherol changes have been reported, and it was on average 2.2-fold higher in sun leaves as compared with shade leaves. We conclude that there are two components in the α-tocopherol pool, one dynamic that responds to environmental changes and one age-related which increases linearly with time in a light-dependent manner. The physiological meaning of the latter remains obscure.

Notes: B-function genes determine the identity of petals and stamens in the flowers of model plants such as Arabidopsis and Antirrhinum. Here, we show that a putative B-function gene BpMADS2, a birch homolog for PISTILLATA, is expressed in stamens and carpels of birch inflorescences. We also present a novel birch gene BpMADS8, a homolog for APETALA3/DEFICIENS, which is expressed in stamens. Promoter-GUS analysis revealed that BpMADS2 promoter is active in the receptacle of Arabidopsis flower buds while BpMADS8 promoter is highly specific in mature stamens. BpMADS2 promoter::BARNASE construct prevented floral organ development in Arabidopsis and tobacco. In birch, inflorescences with degenerated stamens and carpels were obtained. BpMADS8::BARNASE resulted in degeneration of stamens in Arabidopsis and birch causing male sterility. In tobacco, only sepals were developed instead of normal flowers. The results show that the BpMADS2::BARNASE construct can be used to specifically disrupt floral organ development in phylogenetically distant plant species. The stamen-specific promoter of BpMADS8 is a promising tool for biotechnological applications in inducing male sterility or targeting gene expression in the late stamen development.

Notes: We have used yeast two-hybrid screens and biochemical methods to identify glycolytic enzymes that interact with subcellular structures in hypoxic maize seedlings. As binding domain-bait fusion constructs, we have cloned actin, cytosolic aldolase, the three sucrose synthase (SUS) isoforms SUS1, SUS3, and SH1 as well as the SNF1-related protein kinase into yeast and identified cytosolic isoforms of glyceraldehyde 3-phosphate dehydrogenase (GAPDH), enolase, tubulin, and mitochondrial porin voltage-dependent anion channel protein (VDAC) as well as protein kinases and proteins involved in ubiquitinylation and proteasome-linked degradation as interacting activation domain-prey clones. The results were further confirmed using overlay blots (VDAC) as well as co-polymerization and co-precipitation assays (tubulin and actin). Some results were obtained that support the idea of metabolite and modification effects on the association, namely guanosine triphosphate (GTP)/MgCl2 was necessary for the binding of enolase to actin. GAPDH is inactivated upon association with tubulin but then serves to stabilize the microtubules. The findings support the idea of the dynamic formation of locally associated complexes of enzymes involved in sucrose breakdown and glycolysis in plant cells depending on their metabolic state.

Notes: Acid invertases play a key role in sugar metabolism, and the plant hormone abscisic acid (ABA) enhances sugar accumulation in crop sink organs, but information about the relationship between ABA and acid invertases has been limited. The present experiments were done with both in vivo pre-incubation of the grape (Vitis vinifera × V. labrusca L.) berry tissues in ABA-containing medium and in vivo infiltration of ABA into the intact berries. The results show that ABA activates both the soluble and cell wall-bound acid invertases during fruit development by enhancing their activities and amounts as assessed by immunoblotting or enzyme-linked immunosorbent assay. This activation was pH, time course and ABA dose dependent. The serine/threonine protein kinase inhibitors K252a, staurosporine and H7 and acid phosphatase increased the activation of ABA-induced acid invertase, but the tyrosine protein kinase inhibitor quercetin strongly suppressed the ABA-induced effects, suggesting that a complex reversible protein phosphorylation is involved in the ABA-induced activation of acid invertases. The effects of the protein kinase inhibitors were dependent on the in vivo state of the tissues but independent of the expression of acid invertases. Two ABA analogues, (–)-ABA and trans-ABA, had no effect on acid invertases, showing that the ABA-induced activation of acid invertases is specific to the physiologically active form of ABA. These data suggest that ABA may be involved in fruit development by activating acid invertases.

Notes: Onions were grown in environmentally controlled growth chambers for 85 days to investigate the effect of relatively low light intensity (350 µmol m−2 s−1) at two different total irradiance periods (12-h and 24-h photoperiods) on growth and photosynthetic performance. To test whether photosynthetic downregulation occurred due to carbohydrate feedback, we used onions that differed in bulb-forming capacity. Allium fistulosum (L. cv. ‘Kinka’) is a non-bulbing onion, with potentially limited carbohydrate storage capacity, while Allium cepa (L. cv. ‘Cal 296’) is a bulb-forming onion with possibly greater carbohydrate storage capacity. In A. fistulosum, photosynthetic downregulation was observed in 24-h plants as indicated by reductions in the light- and CO2-saturated photosynthetic capacity (Asat and Amax, respectively) by 26%, reduced maximum rate of carboxylation (Vcmax) by ribulose-1,5-biphosphate carboxylase/oxygenase (Rubisco) by 33%, reduced maximum rate of electron transport (Jmax) by 27% and 3-fold higher foliar sugar concentration. In contrast, the photosynthetic and biochemical capacity of A. cepa was not affected by exposure to 24-h photoperiod, presumably because substantial amounts of foliar carbohydrates were re-allocated to bulbs. In 24-h A. cepa, up to 84% of total plant mass was allocated to bulbs, while in 12-h plants, more mass was allocated to leaves. Production of greater leaf area in 12-h plants compared with 24-h plants compensated for lower total daily irradiance such that 12-h and 24-h plants of both species exhibited similar daily total leaf net CO2 exchange and plant mass at the end of the experiment.

Notes: Few studies have investigated the interaction of ultraviolet (UV)-B radiation and CO2 concentration on plants. We studied the combined effects of UV-B radiation and CO2 concentration on canola (Brassica napus cv. 46A65) under four growth conditions – ambient CO2 with UV-B (control), elevated CO2 with UV-B, ambient CO2 without UV-B, and elevated CO2 without UV-B – to determine whether the adverse effects of UV-B are mitigated by elevated CO2. Elevated CO2 significantly increased plant height and seed yield, whereas UV-B decreased them. Elevated CO2 ameliorated the adverse effects of UV-B in plant height. UV-B did not affect the physical characteristics of leaf but CO2 did. Certain flower and fruit characteristics were affected negatively by UV-B and positively by CO2. UV-B did not affect net photosynthesis, transpiration and stomatal conductance but decreased water use efficiency (WUE). Elevated CO2 significantly increased net photosynthesis and WUE. Neither UV-B nor CO2 affected chlorophyll (Chl) fluorescence. UV-B significantly decreased Chl b and increased the ratio of Chl a/b. Elevated CO2 decreased only the ratio of Chl a/b. UV-B significantly increased UV-absorbing compounds while CO2 had no effect on them. Both UV-B and CO2 significantly increased epicuticular wax content. Many significant relationships were found between morphological, physiological, and chemical parameters. This study showed that elevated CO2 can partially ameliorate some of the adverse effects of UV-B radiation in B. napus.

Notes: Xyloglucan endotransglucosylase/hydrolases (XTHs) are thought to be involved in various aspects of plant development by modifying the structure of xyloglucan cross-links. To address one of the roles of XTHs in plant growth, we identified an XTH, VrXTH1, in the mungbean through a differential reverse transcriptase-polymerase chain reaction. The deduced amino acid sequence of VrXTH1 shows high similarity to other XTHs. In addition, a signal peptide consisting of 17 amino acids is found at the N-terminus. The gene expression of VrXTH1 was differentially regulated in tissues and was higher in hypocotyls and stems than it was in other tissues. The steady state level of VrXTH1 transcripts was closely related to the elongation regions of hypocotyls. Notably, in the elongation region of hypocotyls, most VrXTH1 mRNAs were limited to the epidermis and to some layers of the cortex that act as growth-limiting tissue. Growth-promoting hormones, such as auxin and brassinolide, strongly enhanced mRNA accumulation of VrXTH1. However, abscisic acid, a hormone which is antagonistic to auxin, acted as a downregulator. Overall, VrXTH1 seems to play a role in plant growth at the gene level and, thus, by possibly altering cell wall morphogenesis in mungbean hypocotyls.

Notes: The light-induced de-epoxidation of xanthophylls is an important photoprotective mechanism in plants and algae. Exposure to ultraviolet radiation (UVR, 280–400 nm) can change the extent of xanthophyll de-epoxidation, but different types of responses have been reported. The de-epoxidation of violaxanthin (V) to zeaxanthin (Z), via the intermediate antheraxanthin, during exposure to UVR and photosynthetically active radiation (PAR, 400–700 nm) was studied in the marine picoplankter Nannochloropsis gaditana (Eustigmatophyceae) Lubián. Exposures used a filtered xenon lamp, which gives PAR and UVR similar to natural proportions. Exposure to UVR plus PAR increased de-epoxidation compared with under PAR alone. In addition, de-epoxidation increased with the irradiance and with the inclusion of shorter wavelengths in the spectrum. The spectral dependence of light-induced de-epoxidation under UVR and PAR exposure was well described by a model of epoxidation state (EPS) employing a biological weighting function (BWF). This model fit measured EPS in eight spectral treatments using Schott long pass filters, with six intensities for each filter, with a R2 = 0.90. The model predicts that 56% of violaxanthin is de-epoxidated, of which UVR can induce as much as 24%. The BWF for EPS was similar in shape to the BWF for UVR inhibition of photosynthetic carbon assimilation in N. gaditana but with about 22-fold lower effectiveness. These results demonstrate a connection between the presence of de-epoxidated Z and the inhibition under UVR exposures in N. gaditana. Nevertheless, they also indicate that de-epoxidation is insufficient to prevent UVR inhibition in this species.

Notes: SULTR2;1 is a low-affinity sulfate transporter expressed in the vascular tissues of roots and leaves for interorgan transport of sulfate in Arabidopsis thaliana. Transgenic Arabidopsis carrying a fusion gene construct of SULTR2;1 5′-promoter region and β-glucuronidase coding sequence (GUS) demonstrated that within the reproductive tissues, SULTR2;1 is specifically expressed in the bases and veins of siliques and in the funiculus, which connects the seeds and the silique. The antisense suppression of SULTR2;1 mRNA caused decrease of sulfate contents in seeds and of thiol contents both in seeds and leaves, as compared with the wildtype (WT). The effect of antisense suppression of SULTR2;1 on seed sulfur status was determined by introducing a sulfur-indicator construct, p35S::βSRx3:GUS, which drives the expression of GUS reporter under a chimeric cauliflower mosaic virus 35S promoter containing a triplicate repeat of sulfur-responsive promoter region of soybean β-conglycinin β subunit (βSRx3). The mature seeds of F1 plants carrying both the SULTR2;1 antisense and p35S::βSRx3:GUS constructs exhibited significant accumulation of GUS activities on sulfur deficiency, as compared with those carrying only the p35S::βSRx3:GUS construct in the WT background. These results suggested that SULTR2;1 is involved in controlling translocation of sulfate into developing siliques and may modulate the sulfur status of seeds in A. thaliana.

Notes: The expression of totipotency in plant protoplasts is a complex developmental phenomenon and is affected by genetic and physiological factors. Polyamines (PAs) are known to be involved in a variety of growth and developmental processes in higher plants, as well as in adaptation to stresses. In this study, we present the homeostatic characteristics of the endogenous PA putrescine (Put), spermidine (Spd), and spermine (Spm) in totipotent (T) and non-totipotent (NT) tobacco protoplasts and in recalcitrant (R) grapevine protoplasts. T-tobacco protoplasts, with high division rates, have the highest level of endogenous PAs. In these protoplasts, the soluble-hydrolyzed fraction predominates and increases, and the insoluble-hydrolyzed fraction also increases, whereas soluble (S) PAs decrease rapidly during culture. The isolation process contributes to the increased Put levels, which are higher in freshly isolated NT-tobacco protoplasts than in T-protoplasts. During culture, total Put predominates over Spd and Spm, and the highest accumulation is found in T-protoplasts. Ornithine decarboxylase and arginase activities both increase in T-protoplasts, whereas arginine decarboxylase activity causes Put accumulation in NT-tobacco protoplasts. R-grapevine protoplasts show a different PA profile, mostly due to the lower PA content, the higher S-fraction, and the higher ratio of Spm to total PAs. The data suggest that the levels and metabolism of the intracellular PAs could be related to the expression of totipotency of plant protoplasts.

Notes: In the southeast of the Qinghai-Tibetan Plateau of China, sea buckthorn (Hippophae rhamnoides L.), which is a thorny nitrogen-fixing deciduously perennial shrub, has been widely used in forest restoration as the pioneer species. In our study, two contrasting populations from the low and high altitudinal regions were employed to investigate the effects of drought, ultraviolet-B (UV-B) and their combination on sea buckthorn. The experimental design included two watering regimes (well watered and drought stressed) and two levels of UV-B (with and without UV-B supplementation). Drought significantly decreased total biomass, total leaf area and specific leaf area (SLA), and increased root/shoot ratio, fine root/coarse root ratio and abscisic acid content (ABA) in both populations. However, the high altitudinal population was more responsive to drought than the low altitudinal population. On the other hand, elevated UV-B induced increase in anthocyanins in both populations, whereas the accumulation of UV-absorbing compounds occurred only in the low altitudinal population. The drought-induced enhancement of ABA in the high altitudinal population was significantly suppressed in the combination of drought and elevated UV-B. Moreover, significant drought × UV-B interaction was detected on total biomass in both populations, total leaf area and fine root/coarse root in the low altitudinal population, and SLA in the high altitudinal population. These results demonstrated that there were different adaptive responses between two contrasting populations, the high altitudinal population exhibited higher tolerance to drought and UV-B than the low altitudinal population.

Notes: Deoxyhypusine synthase (DHS; EC 2.5.1.46) mediates the first of two enzymatic reactions that convert inactive eukaryotic translation initiation factor-5A (eIF-5A) to an activated form, thought to facilitate translation. A full-length cDNA clone encoding canola (Brassica napus cv. Westar) DHS was isolated from a cDNA-expression library prepared from senescing leaves. Transgenic canola lines with suppressed DHS expression were obtained by introducing a transgene expressing antisense 3′-UTR canola DHS cDNA under the regulation of the constitutive cauliflower mosaic virus 35S (CaMV-35S) promoter. Transformed seed was obtained by vacuum infiltration of canola inflorescences using the protocol developed for Arabidopsis with modifications. The resultant transgenic plants had reduced levels of leaf DHS protein and exhibited delayed natural leaf senescence. Suppression of DHS also increased leaf size by 1.5- to two-fold and resulted in increases in seed yield of up to 65%. Moreover, the enhanced performance of transgenic plants reflected increased tolerance to chronic sublethal stress. When wild-type and transgenic plants were grown in 6-inch pots, the increase in seed yield accruing from suppression of DHS was approximately 4.5-fold greater than when the plants were grown in 12-inch pots. Thus, suppression of DHS appears to ameliorate the effects of sublethal stress engendered by growth in small containers.

Notes: In higher plants, the xylem vessels functionally connect the roots with the above-ground organs. The xylem sap transports various organic compounds, such as proteins and amino acids. We examined drought and rewatering-inducible changes in the amino acid composition of root xylem sap collected from Cucurbita maxima roots. The major free amino acids in C. maxima root xylem sap were methylglycine (MeGly; sarcosine) and glutamine (Gln), but MeGly was not detected in the xylem sap of cucumber. MeGly is an intermediate compound in the metabolism of trimethylglycine (TMG; betaine), but its physiological effects in plants are unknown. Drought and rewatering treatment resulted in an increase in the concentration of MeGly in root xylem sap to 2.5 mM. After flowering, the MeGly concentration in the xylem sap dropped significantly, whereas the concentration of Gln decreased only after fruit ripening. One milli molar MeGly inhibited the formation of adventitious roots and their elongation in C. maxima, but glycine, dimethylglycine, or TMG had no effect. Similar effects and the inhibition of stem elongation were observed in shoot cuttings of cucumber and Phaseolus angularis. These observations seem to imply a possible involvement of xylem sap MeGly in the physiological responses of C. maxima plants to drought stress.

Notes: In this work we present the first study of the behaviour of tobacco plants, under saline conditions, grafted to salinity-resistant rootstocks of tomato cultivars. To test the viability and efficiency of this grafting technique in tobacco plants subjected to salinity, we analyse the production of foliar biomass and different quality parameters in this crop. With this aim, Nicotiana tabacum cv. Sevilla (scion) was grafted to two cultivars of Lycopersicum esculentum (rootstocks): cv. Jaguar (Sevilla/Jaguar) and cv. Brillante (Sevilla/Brillante). Furthermore, as controls, tobacco plants of cv. Sevilla were used grafted to themselves (Sevilla/Sevilla) and non-grafted plants of cv. Sevilla. Plants were grafted by needle graft following the procedure described by Rivero RM, Ruiz JM, Romero L (2002) Role of grafting in horticultural plants, pp 229–254. In the present work, we demonstrate that the graft of tobacco scions with tomato rootstocks is an effective agricultural approach to improve production and quality in tobacco leaves under conditions of saline stress. Our results show that the rootstock of the cv. Brillante best induced salt resistance in tobacco cv. Sevilla, registering the lowest foliar concentrations of Na+ and Cl–, the lowest lipid peroxidation and the highest proline and sugar concentrations. Overall, this is reflected in better biomass production of the aerial part of the plant. Finally, it is noteworthy that grafting in tobacco plants to tomato rootstocks essentially eliminates foliar nicotine levels (reduced to 1%). These results are of great importance, as this technique implies a rapid, efficient and natural alternative in increasing tobacco-leaf quality and thus reducing harmful effects of this alkaloid on the health of smokers.

Notes: Cucumber seedling radicles decrease in chilling tolerance as they increase in length or decrease in vigor. The protein content of the apical 5 mm of the radicle decreased with decreases in chilling tolerance (R2 = 0.92). This general reduction in protein content was reflected in a decrease of six dehydrin-like proteins with apparent molecular weights of 13.0, 15.0, 16.8, 23.0, 26.8, and 33.5 kDa. The disappearance of naturally occurring dehydrin-like proteins in cucumber seedling radicles as they elongate or lose vigor was correlated with a loss of chilling tolerance. Exposure to an osmotic (0.6 M mannitol) or heat (2 min at 45°C) stress enhanced chilling tolerance. The osmotic-shock treatment induced both chilling tolerance and the appearance or strengthening of dehydrin-like proteins previously present in radicles. The heat-shock treatment also induced high levels of chilling tolerance and protein(s) that reacted with a 23 and 70 kDa antibody. However, these heat-shock protein (HSPs) did not cross react with the probe for dehydrin-like proteins. When organized into high, medium, and low chilling tolerance groups, radicle that were chilling tolerant contained either the 13.0 and 16.8 kDa dehydrin-like proteins, or the 15.0 and 23.0 kDa dehydrin-like proteins, or the 23 or 70 kDa HSP.

Notes: Despite the major impacts of fire on plants, responses to fire damage have not been closely studied on the level of gene expression. Here, we present analyses of novel transcripts from tomato (Lycopersicon esculentum cv. Heinz), which are systemically upregulated in leaves after a distant leaf is wounded by flame. Nine cDNA fragments were isolated from a subtractive cDNA library of leaf tissue 1 h after flaming. Using data mining and polymerase chain reaction (PCR), full-length open-reading frames were predicted, amplified, and then sequenced. Real-time (RT)-PCR using leaf RNA after flaming confirmed the systemic accumulation of 4 and 7 transcripts within 30 and 60 min, respectively, before returning to basal levels within 3 h. During this same time course, proteinase inhibitor I levels gradually increased over 30-fold in 6 h. Expression analyses also showed that eight of the transcripts are present in unwounded leaf, stem, and root tissues. The predicted proteins include an acyl carrier, adenylyl sulfate reductase, PS II oxygen-evolving complex protein 3, anion : sodium symporter, chloroplast-specific ribosomal protein, a histidine triad family protein, and an unknown wound/stress-related protein. Homologs of several of these proteins have been associated with other types of wound and stress responses. It appears that, within an hour after being damaged by fire, plants systemically upregulate a variety of genes involved with basic cell metabolism and upkeep, in addition to classic defense genes such as proteinase inhibitors.

Notes: Among the longest cell types known in plants, cotton fibers are economically important seed trichomes that provide a unique single-celled model system for studying fundamental biological processes. Functional genomic approaches have served to characterize dynamic changes to the cotton fiber transcriptome in response to developmental signals that control fiber morphogenesis at the level of a single cell. The genetic complexity of the fiber transcriptome is very high and accounts for as much as 45–50% of the genes in the cotton genome. In addition to a large diverse group of constitutively expressed genes, expression profiling of the transcriptome revealed two developmentally regulated stage-specific expression patterns that define rapid cell elongation during primary cell wall (PCW) synthesis relative to secondary cell wall biogenesis. In developing cotton fibers, many fiber genes involved in PCW synthesis and turgor-driven cell expansion are differentially expressed in a manner that parallels the growth rate. Characterization of the cotton fiber transcriptome has immediate applications in agricultural biotechnology and molecular breeding programs geared toward the genetic improvement of yield and fiber quality.

Notes: Methyl salicylate (MeSA) is thought to have a major role in biotic and abiotic stresses by acting as a signal to trigger the oxidative burst, which is needed to activate gene expression in plant stress responses. To assess the potential effects of sustained foliar accumulation of MeSA on plant stress tolerance, the extent of photo- and antioxidant protection, lipid peroxidation and visual leaf area damage were evaluated in MeSA-treated (c. 60 nl l−1 in air) and control holm oak (Quercus ilex L.) plants exposed to heat stress. Control plants showed an increase in foliar MeSA levels up to 1.8 nmol [gDW]−1 as temperature increased and they displayed tolerance to temperatures as high as 45°C, which might be attributed, at least in part, to enhanced xanthophyll de-epoxidation and increases in ascorbate and α-tocopherol. MeSA-treated plants showed a sustained foliar accumulation of this compound, with values ranging from 10 to 23 nmol [gDW]−1 throughout the experiment. These plants showed lower ascorbate and tocopherol levels and higher oxidative damage at 50°C than controls, as indicated by enhanced malondialdehyde levels and leaf area damage and lower maximum efficiency of PSII photochemistry (Fv/Fm ratio). These results demonstrate that a sustained foliar accumulation of MeSA is detrimental to plant function and that it can reduce thermotolerance in holm oak by altering antioxidant defences.

Notes: The virescent character is a genetic variant in pigmentation characterized by a delay in greening. Seedlings of the virescent mutants v1, v2, v3, v4, v13, v16, v18, v19 and v26 of maize exhibit chlorosis when grown at low temperature. Chlorotic leaves contain plastids that appear to have been arrested at an early stage of development. The results indicated that V16, V2, V3 and V4 loci control early stages of chloroplast development while V1, V13 and V19 may play a role at the end of development. The mutations in the V18 and V26 loci may control an intermediate step. At the pigment level, the virescent mutants of maize differ widely from analogous mutations existing in other plants. The mutations were characterized by a reduced amount of chlorophyll a and b (up to 100 times in v16) and chlorophyll a/b ratio above normal (up to 13.7 in v16). Lutein content was reduced in all mutants (less than 3% in v16 compared to wild type) but v13, while pigments of the xanthophyll cycle were found at higher levels in v1 and v13 (more than 10 and 90%, respectively). The v2, v3, v4, v16 and v18 mutants that are most depleted in β-carotene (36 times less in average than wild type) are also deprived in D1 and D2 polypeptides. Moreover, the v2, v3, v4, v16 and v18 mutants characterized by a lower accumulation in lutein are most depleted of light-harvesting complex II. All mutants possess a functioning, fully reversible, non-photochemical quenching mechanism. This is most developed in the v13 and v19 mutants (φn = 0.48 and 0.44, respectively). These two mutants also have a relatively high primary photochemical yield for photosystem II and a functioning photosystem I (φp = 0.23 and 0.39, respectively). The most interesting mutant is v13 that shows severe chlorosis and possesses the most effective non-photochemical quenching mechanism(s), which is thought to provide protection against excess photon absorption by photosystem II.

Notes: A UV-B exclusion-experiment was conducted in the high Arctic Zackenberg, NE Greenland, in which Salix arctica leaves during most of the growing season were fixed perpendicular to the solar zenith angle, thereby receiving maximal solar radiation. Covered with Teflon and Mylar foil, the leaves received approximately 90 and 40% of the ambient UV-B irradiance, respectively. The effects were examined through recordings of chlorophyll a fluorescence transients, determination of biomass and analysis of total carbon and nitrogen content and amount of soluble flavonoids in the leaves. The processing of light was analysed by means of the chlorophyll a fluorescence transient, using the so-called JIP test, as evolved by Reto J. Strasser and his coworkers. Reduction of the UV-B irradiance caused a rise in many of the fluorescence parameters during July, but not in August (late season). Thus increases in the efficiency that an absorbed photon will be trapped by the PSII reaction centre with the resultant reduction of QA to QA– (ET0/ABS = FV/FM) and the efficiency that an electron residing on QA– will enter the intersystem electron transport chain (ET0/TR0) were observed in reduced UV-B. Moreover, estimated per cross-section of leaf sample, the number of active PSII reaction centres (RC/CSM) and electron transport rate (ETM/CSM) and all performance indexes (PIABS, PICSo and PICSm) were increased in reduced UV-B. The total soluble flavonoid content was highest in ambient UV-B. The treatment effects on fluorescence parameters that were directly measured (e.g. F0 and FM) and those that were derived (e.g. quantum efficiencies, parameters per PSII reaction centres and per cross-section of leaf sample) are discussed in relation to one another, in relation to daily and seasonal variation, and from the perspective of evaluating the relative importance of UV-B of donor and acceptor side capacity in Photosystem II. In conclusion, the experimental set-up and non-invasive measurements proved to be a sensitive method to screen for effects of UV-B stress.

Notes: The basidiomycete Piriformospora indica interacts with Arabidopsis roots and mimics an arbuscular mycorrhiza. A MATH [meprin and TRAF (tumour necrosis factor receptor-associated factor) homology] domain-containing (MATH) protein at the plasma membrane of Arabidopsis roots is one of the first components to respond to the presence of this fungus. MATH proteins are involved in nodule formation in Medicago and protein degradation in the Arabidopsis cytosol. They exhibit sequence similarities to meprins, extracellular peptidases which cleave (signal) peptides, and to TRAFs, intracellular proteins which interact with receptor kinases at the plasma membrane. Fifty-nine genes for MATH proteins are present in the Arabidopsis genome. Members of this protein family are predicted to be found in the ER–plasma membrane–extracellular space continuum, in the nucleus–cytosol compartment and in organelles. In this article, we describe this novel class of plant genes. We also use MS-MS analyses to identify the subcellular localization of individual members of the MATH protein family in Arabidopsis thaliana.

Notes: Maize (Zea mays L., line F2) plants were grown in the field under high or low fertilization input to monitor the metabolic, biochemical and molecular events occurring in young vegetative leaves and in the different leaf stages along the main axis in plants harvested 15 days after silking. This study shows that in maize which possess large sinks represented by the seeds, nitrogen (N) management is different compared with tobacco in which sink strength is much lower and mostly limited to young developing leaves. Although in young leaves nitrate assimilation predominates in both species, ammonium assimilation exhibits some species-specific differences with respect to inorganic and organic N metabolite accumulation during leaf ageing. These differences are likely to be related to the high sink strength of the ear in maize, which continuously imports carbon and N assimilates during grain filling. Consequently, a number of cytosolic glutamine synthetase isoenzymes are expressed during leaf ageing to maintain a constant flux of reduced N necessary for the synthesis of organic N molecules used either for leaf protein synthesis or directly translocated to the grain. This situation contrasts with that found in tobacco for which leaf ammonium assimilation in the plastids is shifted to the cytosol during the transition from sink leaves to source leaves. These species-specific differences for N assimilation and recycling are discussed in relation to the evolution of leaf photosynthetic activity and leaf senescence, which both seem to be largely dependent on the different sink strength in each species.

Notes: Effect of low temperature on anthocyanin accumulation in seedlings of Alternanthera bettzickiana and activity changes of calmodulin (CaM) and Ca2+-ATPase under low temperature were studied. Results indicate that the increase of anthocyanin content was obviously paralleled not only by the activity of CaM but also by the activity of Ca2+-ATPase. In addition, seedlings were pretreated with CaM antagonist [chlorpromazine (CPZ)] before low-temperature treatment in order to further investigate whether CaM plays a role in anthocyanin accumulation. CPZ pretreatment inhibited the activity of CaM and Ca2+-ATPase and caused a reduction in anthocyanin levels. Hence, it is concluded that CaM and Ca2+-ATPase were directly correlated with anthocyanin accumulation under low temperature, Ca2 ± CaM may be involved in low-temperature signal transduction leading anthocyanin synthesis.

Notes: Arabinogalactan-proteins (AGPs) are a class of large hydroxyproline-rich glycoproteins (HGRPs) found in almost all plant species, and have been implicated in various plant growth and developmental processes including xylogenesis. A total of six AGP-like genes or gene families have been cloned from differentiating pine xylem. In this study, seven different members of the ptaAGP5 gene family with between 54% and 73% similarity at the amino acid level were newly identified. Gene-specific primers were designed and relative transcript levels of 11 loblolly pine AGP and AGP-like genes were examined using real-time reverse transcription-polymerase chain reaction (RT-PCR) analysis. Expression was examined in different tissues: earlywood and latewood; xylem from two populations; drought-stressed and well-watered roots; compression, opposite and vertical wood; and in vitro cultured cells induced for lignification. The different loblolly pine AGP and AGP-like genes showed varying expression patterns under the different conditions, suggesting different functions for each loblolly pine AGP. The results from this study also suggest that some AGPs are associated with xylogenesis, but not with lignification, and that different xylem AGPs probably have different functions.

Notes: Lon-, Clp- and FtsH-like proteases, members of three families of ATP-dependent proteases derived from bacterial ancestors, have been identified in plant mitochondria. Classifications of mitochondrial-specific paralogues of plant ATP-dependent proteases, based on targeting prediction programs and different experimental methods, are compared. Accumulating evidence points to similarities in the structure and the mechanisms of action used by various ATP-dependent proteases. Therefore, before focusing on plant mitochondrial ATP-dependent proteases, the paper discusses general features of ATP-dependent proteases. To date, information about structure and function of plant mitochondrial Lon-like, Clp-like and FtsH-like proteases is rather scarce, but indicates that these enzymes, like their bacterial and eukaryotic homologues, combine proteolytic and chaperone-like activities to form mitochondrial protein quantity and quality control system in plants.

Notes: Several studies have shown that protease inhibitors can suppress programmed cell death in various plant species and plant tissues. This is especially true of caspase inhibitors that can block programmed cell death and its marker DNA laddering. There are up to six different caspase-like activities that can be measured in plant extracts, the most prominent being caspase1-like and caspase3-like. These activities can be located in vacuoles and also in the nucleus or the cytoplasm. This represents a striking apparent similarity with animal programmed cell death. Because there are no caspase orthologue in plant genomes, a major challenge is to identify these proteases. Recently two proteases with caspase-like activities have been recognized as belonging to two different protease families that are not closely related to animal caspases. Various other protease families have been implicated and this suggests that complex protease networks have been recruited for the plant cell demise.

Notes: We examined differences between summer and winter in xanthophyll cycle-dependent energy dissipation and leaf antioxidant systems in needles of the overwintering evergreen Taxus x media cv. Tauntonii (Taunton yew) growing in both sun and shade environments in Saint Paul, Minnesota. During the winter, both sun and shade plants exhibited increases in the capacity for, and utilization of, xanthophyll cycle-dependent thermal energy dissipation. Winter needles showed decreases (sun needles) or no change (shade needles) in superoxide dismutase activity (EC 1.15.1.1), no change in ascorbate peroxidase activity (EC 1.11.1.11) and no change (sun needles) or increases (shade needles) in reduced ascorbate levels. Both sun and shade needles showed large increases in glutathione reductase activity (EC 1.6.4.2) and total glutathione levels during the winter, in addition to increases in levels of α-tocopherol. These results suggest an important photoprotective role during the winter for xanthophyll cycle-dependent energy dissipation and for the antioxidants glutathione and α-tocopherol. They suggest a less important photoprotective function of the enzyme-based water–water cycle in winter acclimation in the seasonally very cold environment of Minnesota.

Notes: Etiolated pea (Pisum sativum L. cv. Alaska) seedlings grown under microgravity conditions in space show automorphosis: bending of epicotyls, inhibition of hook formation and changes in root growth direction. In order to determine the mechanisms of microgravity conditions that induce automorphosis, we used a three-dimensional clinostat and obtained the successful induction of automorphosis-like growth of etiolated pea seedlings. Kinetic studies revealed that epicotyls bent at their basal region towards the clockwise direction far from the cotyledons from the vertical line (0°) (see legend for Fig. 6) at approximately 40° in seedlings grown both at 1 g and in the clinostat within 48 h after watering. Thereafter, epicotyls retained this orientation during growth in the clinostat, whereas those at 1 g changed their growth direction against the gravity vector and exhibited a negative gravitropic response. On the other hand, the plumular hook that had already formed in the embryo axis tended to open continuously by growth at the inner basal portion of the elbow; thus, the plumular hook angle initially increased; this was followed by equal growth on the convex and concave sides at 1 g, resulting in normal hook formation; in contrast, hook formation was inhibited on the clinostat. The automorphosis-like growth and development of etiolated pea seedlings was induced by auxin polar transport inhibitors (9-hydroxyfluorene-9-carboxylic acid, N-(1-naphthyl)phthalamic acid and 2,3,5-triiodobenzoic acid), but not by anti-auxin (p-chlorophenoxyisobutyric acid) at 1 g. An ethylene biosynthesis inhibitor, 1-aminooxyacetic acid, inhibited hook formation at 1 g, and ethylene production of etiolated seedlings was suppressed on the clinostat. Clinorotation on the clinostat strongly reduced the activity of auxin polar transport of epicotyls in etiolated pea seedlings, similar to that observed in space experiments (Ueda J, Miyamoto K, Yuda T, Hoshino T, Fujii S, Mukai C, Kamigaichi S, Aizawa S, Yoshizaki I, Shimazu T, Fukui K (1999) Growth and development, and auxin polar transport in higher plants under microgravity conditions in space: BRIC-AUX on STS-95 space experiment. J Plant Res 112: 487–492). These results suggest that clinorotation on a three-dimensional clinostat is a valuable tool for simulating microgravity conditions, and that automorphosis of etiolated pea seedlings is induced by the inhibition of auxin polar transport and ethylene biosynthesis.

Notes: Chickpea is an important legume crop of the tropics and subtropics. As it is cultivated mostly during the dry season, drought is the major cause of poor chickpea yields. A wild relative of chickpea, Cicer pinnatifidum, is more tolerant than chickpea itself to various abiotic stresses, including drought. A cDNA clone encoding a dehydrin gene, cpdhn1, was isolated from a cDNA bank prepared from ripening seeds of C. pinnatifidum. Dehydrins are proteins which accumulate in seeds during late embryogenesis and also during stress brought about by drought and other abiotic factors in many plants. The polypeptide deduced to correspond to this gene, cpdhn1, consists of 195 amino acid residues with a molecular mass of 20.4 kDa. The polypeptide is a Y2K dehydrin exhibiting two conserved ‘Y’-segments in the amino-terminal region and one conserved ‘K’-segment close to the carboxy terminus. Northern blot analyses showed that cpdhn1 expression was induced not only during seed development, but also in leaves in response to drought, chilling and salinity and also to treatment with ABA or methyl jasmonate. The induction of cpdhn1 expression by methyl jasmonate and ABA indicates that the gene may also be involved in the response to biotic stress. The CpDHN1 protein may thus improve the tolerance of chickpea to a variety of environmental stresses, both abiotic and biotic.

Notes: Higher plant metallothioneins are suspected of reducing metal-induced oxidative stress and binding copper and zinc cofactor metals for delivery to important apometalloproteins. A metallothionein-like gene (MT-L2) cDNA clone pCkn16A1 (Accession U35225) was cloned from heat-shock-induced Nicotiana plumbaginifolia containing the heat-shock-inducible isopentenyl transferase (ipt) gene (HS-ipt). Ipt expression in plants leads to enhanced cytokinin biosynthesis. In mature leaves of non-transformed N. plumbaginifolia and Nicotiana tabacum, copper stress caused a significant loss of MT-L2 mRNA transcripts. Under non-stressed conditions, HS-ipt induced (N. plumbaginifolia) or light-induced (SSU-ipt) (N. tabacum) plants had higher MT-L2 transcript levels than non-transformed or transformed (GUS) controls. Unlike control plants, copper stress did not reduce MT-L2 mRNA levels in the cytokinin accumulating transgenic plants. Enhanced cytokinin production also led to lower lipid peroxidation compared with controls under non-stressed and copper-stressed conditions. Greater MT-L2 transcript levels and protection against oxidative events prior to or during copper stress could contribute to the observed eight-fold accumulation of copper in mature leaves of ipt expressing plants compared to non-transformed plants. Expression of this tobacco MT-L2 mRNA may be modulated directly by cytokinin or indirectly as a consequence of cytokinin-mediated antioxidant activity.

Notes: LLA23, an abscisic acid-, stress- and ripening-induced (ASR) protein, was isolated previously from lily (Lilium longiflorum) pollen. Close examination of the C-terminus of this ASR protein revealed the presence of basic regions reminiscent of a nuclear localization signal (NLS). Fluorescence microscopy studies using green fluorescent protein (GFP) fusion proteins indicated that the bipartite NLS in LLA23 exhibited nuclear localization properties. Accordingly, mutations in the NLS motifs of LLA23 defined two regions, either of which was necessary for partial nuclear targeting and both of which were required for complete nuclear localization. In addition, oligonucleotide-directed mutagenesis identified lysine residues within the NLS necessary for nuclear localization. Immunogold localization confirmed that the protein was located to both the cytoplasm and nucleus of generative and vegetative cells of pollen grains; the generative nuclei showed the highest number of LLA23 labelling. The possible function of ASR proteins in both the cytoplasm and nuclei of pollen grains is discussed.

Notes: Using 14C-labelled substrates, the succession of the single steps in the glycolate metabolism was investigated in Mougeotia scalaris and Eremosphaera viridis, which, within the group of green algae, are representatives of the evolutionary lines of Charophyta and Chlorophyta, respectively. In both algae the same metabolites are formed as in higher plants, although in Eremosphaera, which in contrast to Mougeotia does not possess leaf peroxisomes, all reactions are exclusively mitochondrial. Concomitant with the oxidation of glycolate, the synthesis of ATP was demonstrated in Eremosphaera. Formation of tartronic semi-aldehyde or other products different from those in land plants could not be demonstrated in either of these algae. Excretion of glycolate by Mougeotia and Eremosphaera is enhanced by decreasing the CO2 concentration as well as by increasing the light intensity, but is completely stopped about 14 h later. Whereas increasing enzyme activities of the glycolate pathway apparently reduces glycolate excretion in Mougeotia, activation of CO2 pumps seems to be the dominant reaction to prevent glycolate excretion in Eremosphaera. Mesostigma viride is one of the phylogenetically oldest algae in the group of Charophyceae. As this alga has already been demonstrated to contain microbodies with enzymes of leaf peroxisomes, the peroxisomal glycolate pathway must have originated at a very early stage. Surprisingly, the organelles from Mesostigma contain also the glyoxysomal marker enzyme isocitrate lyase suggesting these microbodies to be prototypes from which both glyoxysomes and leaf peroxisomes evolved.

Notes: Suspension-cultured cells derived from seedlings of Bruguiera sexangula are tolerant to NaCl. To examine the influence of long-term salt stress on glycolysis, we determined the effect of 100 mM NaCl on the activities of two key enzymes, phosphofructokinase (PFK, EC 2.7.1.11) and pyruvate kinase (PK, EC 2.7.1.40), and on the bypass enzymes, pyrophosphate: fructose-6-phosphate phosphotransferase (PFP, EC 2.7.1.90), phosphoenolpyruvate carboxylase (PEPC, EC 4.1.1.49) and phosphoenolpyruvate phosphatase (PEPase, EC 3.1.3.60). From 10 days after NaCl treatment, increases were found in the activities of PFK, PK and PEPC. In contrast, there was little or no difference in the activities of PFP or PEPase. The short-term effect of salt stress was also investigated. NaCl (150 mM) caused a 1.4-fold increase in respiratory O2 uptake at 24 h after treatment. Alongside this respiratory rise, drastic changes in the levels of glycolytic metabolites were found: a decrease in the levels of glucose, glucose-6-phosphate and fructose-6-phosphate, and an increase in the levels of fructose-1, 6-bisphosphate and metabolites of the later steps of the glycolytic pathway. The crossover diagram of metabolites suggests that NaCl stimulates those steps catalysed by PFK and/or PFP. The in vitro activities of partially purified PFK and PFP were increased by the addition of 150 mM NaCl. The effect of salt on the kinetic properties of PFK and PFP was studied, and possible control mechanisms of glycolysis on salt stress are discussed.

Notes: One of the most cited papers in arbuscular mycorrhizal (AM) research was published by Phillips and Hayman in 1970 describing an easy standard method to stain AM fungi (AMF) in roots. Since then, a number of other methods (destructive–non-destructive; vital–non-vital) on how to visualize AMF in roots have been published. Our review provides an overview on present techniques used to visualize AMF in roots and gives recommendations on their use. We hope that the present review will help the readers to choose an appropriate method to visualize AMF in roots for their specific experimental set-up.

Notes: An experiment was performed to elucidate interspecific differences in survival time of grass species subjected to an extreme climatic event. We exposed eight grass species to a simulated heat wave in the field (‘free air’ temperature increase at 11°C above ambient) combined with drought. We determined whether interspecific differences in survival time were related to the responses of the species to the imposed stress or could be explained by their ecophysiological or morphological characteristics in unstressed conditions. Surprisingly, there was no effect of specific leaf area, but species with a higher total leaf area survived longer. This may arise from a greater water reserve in the plant as a whole, which could delay the desiccation of the meristem, or from reduced evaporation due to a higher leaf area index. Species in which the decrease in light-saturated stomatal conductance (gs) and photosynthetic CO2 uptake rate (Amax) was strongly related to the decrease in soil water availability (measured as soil relative water content and stress duration) survived longer than species in which gs and Amax likewise declined but responded more to daily fluctuations in irradiance, temperature, and vapor pressure deficit during the heat wave. We, therefore, hypothesize that interspecific differences in stress survival time might be related to the extent to which stomata react to changes in soil water conditions relatively to changes in other environmental and physiological factors. The results suggest that resistance to extremes is governed by other mechanisms than resistance to moderate drought.

Notes: To improve the knowledge of fruit ripening and to provide genomic resources for molecular breeding of apricot (Prunus armeniaca L), 13 006 expressed sequence tags (ESTs) were generated from three λzap cDNA libraries of the pericarp tissues at different stages of development (Physiol Plant 105: 294–303), yielding 5219 (40%) Unigenes. At this stage, the very low interlibrary redundancy indicated that EST sampling of the transcriptome of apricot pericarp is still far from being saturated. Seventy-six percent of Unigenes displayed homologies with public sequences and were clustered into functional categories. The largest expressed categories were related to primary metabolism, stress response, and protein synthesis. Electronic Northern analysis revealed that stress-related proteins and cell wall modification-related enzymes strongly increased during ripening. Among 448 isoproteins (amino acid-level isogenes) detected in the Unigene set, 186 (42%) displayed significant homologies in their coding regions (nucleic acid-level isogenes).

Notes: A comparison was performed of the tetrapyrrole transformations that occur upon irradiation of epicotyl or leaves of dark-grown Pisum sativum L. (var. Zsuzsi, Hungary). High performance liquid chromatography analysis after continuous or flash-irradiation showed that the biosynthetic pathway from protochlorophyllide (Pchlide) to chlorophyll (Chl) a was markedly slowed down at the step of the reduction of geranylgeranyl(gg)-Chl to dihydrogeranylgeranyl (dhgg)-Chl in epicotyls, whereas phytyl-Chl was synthesized in leaves subjected to the same light treatments. Quantitative pigment analysis during continuous irradiations of different intensities also showed that significant Pchlide photodestruction occurred in epicotyls even under weak light. When both Pchlide and chlorophyllide and/or chlorophylls were present in epicotyls, Pchlide photodestruction was faster under 630-nm light than under 670-nm light, which indicates that this process is most efficiently promoted by Pchlide excitation. Pre-incubation of epicotyl segments with 10 mM ascorbate partly alleviated pigment photodestruction in white light. It is concluded that formation of photoactive Pchlide–Pchlide oxidoreductase complexes is important to prevent fast pigment photooxidation after Pchlide accumulation in the dark.

Notes: The sodium/lithium tolerance gene previously isolated from Arabidopsis thaliana (AtSLT1) and Nicotiana tabacum (NtSLT1) has been implicated in the regulation of ion homeostasis via the CaN and SPK1/Hal4 signal transduction pathways. A homologous gene from rice (OsSLT1) encoded by an intronless open-reading frame (1563 bp) on chromosome-1 was studied. The 58-kDa OsSLT1 protein contains a highly conserved C-terminal domain characteristic of the small heat-shock protein (smHSP) and α-crystallin classes of molecular chaperons. Biochemical analysis of recombinant full-length, N-terminal-truncated (lacking aa-1 to aa-217), and C-terminal-truncated (lacking aa-443 to aa-521) versions of OsSLT1 indicated that removal of the C-terminal extension enhances chaperon activity as shown by the ability of the truncated protein to prevent thermal and non-thermal aggregation of client proteins in an ATP-independent manner. The C-terminal-truncated OsSLT1 also enhanced thermotolerance of recombinant Escherichia coli. Unlike the smHSPs, which are transcriptionally activated during stress, the activity of SLT1 appears to be modulated via complex mechanisms of protein cleavage. The implication of the results in relation to the immediate cellular defenses against protein denaturation during stress and to the previously demonstrated role of SLT1 in the CaN and SPK1/Hal4 signaling pathways is discussed.

Notes: Feedback de-excitation (FDE) is a process that protects photosystem II from damage during short periods of overexcitation. Arabidopsis thaliana mutants lacking this mechanism have reduced fitness in environments with variable light intensities. We have assayed the physiological consequences of mutations resulting in the lack of FDE and analysed the differences between field-grown plants and plants grown under fluctuating light in the laboratory. We show that FDE is an important mechanism in short-term responses to fluctuating light. Anthocyanin and carbohydrate levels indicated that the mutant plants were stressed to a higher degree than wild-type (WT) plants. Field-grown mutants were photo-inactivated to a greater degree than WT, whereas mutant plants in the fluctuating light environment in the laboratory seemed to downregulate the photosynthetic quantum yield, thereby avoiding photo-damage but resulting in impaired growth in the case of one mutant. Finally, we provide evidence that FDE is most important under conditions when photosynthesis limits plant growth, for example during flower and seed development.

Notes: The pathogen- and ethylene-inducible pepper-basic pathogenesis-related (PR)-1 gene, CABPR1, was strongly expressed in pepper leaves by osmotic and oxidative stresses. The pepper CABPR1 was introduced into the Arabidopsis plants under the control of the cauliflower mosaic virus 35S promoter. Polymerase chain reaction-amplification with the Arabidopsis genomic DNA and Northern blot analyses confirmed that the pepper CABPR1 gene was integrated into the Arabidopsis genome, where it was overexpressed in the transgenic Arabidopsis plants under normal growth conditions. The constitutive overexpression of CABPR1 induced the expression of the Arabidopsis PR-genes including PR-4, PR-5 and PDF1.2. Enhanced resistance to phytopathogenic bacteria, Pseudomonas syringae pv. tomato DC3000, was also observed in the transgenic Arabidopsis plants. CABPR1 overexpression in the transgenic Arabidopsis caused enhanced seed germination under NaCl (ionic) and mannitol (non-ionic) osmotic stresses. Enhanced tolerances to high salinity and dehydration stresses during seed germination of the transgenic plants were not found at the early seedling stage. The transgenic Arabidopsis plants exhibited a higher tolerance to oxidative stress by methyl viologen at the seed germination, seedling and adult plant stages. These results suggest that the CABPR1 gene may function in the enhanced disease resistance and oxidative stress tolerance of transgenic Arabidopsis plants.

Notes: White lupin (Lupinus albus L.) is adapted to environments of low pH and low available phosphorus through the development of proteoid roots. The high-affinity phosphate/arsenate uptake system is much less sensitive to downregulation by phosphate in white lupin than in other plants. Arsenate is a phosphate analogue and its toxicity to plants is intimately linked to phosphate nutrition. The synthesis of phytochelatins (PCs) has been proposed as a detoxification mechanism for arsenic (As) in plants. The aim of this research was to study PC production by lupin plants in response to As, and the impact of the arsenate–phosphate interaction on PC production. PCs were the most abundant thiols in white lupin under high As exposure, reaching levels higher than in other plants tested. Together, glutathione (GSH) and PCs were able to complex the majority of As in shoots, while an additional PC-independent mechanism might function in roots. P deficiency increased As concentrations in plant tissues, causing an increase in PC accumulation and an increase in the average size of PCs. A direct relationship was observed between PC concentrations and the level of stress caused by As, i.e. the degree of growth inhibition in plants. This study suggests a key role for PCs and GSH in As detoxification by white lupin, especially in shoots. PC analysis may be useful as an early indicator of As exposure and as a tool to assess the degree of As stress of plants, even under P deficiency.

Notes: The family of Deg proteases is present in nearly all organisms from bacteria to higher plants. This family consists of ATP-independent serine endopeptidases with a catalytic domain of trypsin type and up to three PDZ domains, involved in protein–protein interactions. Sixteen deg genes (originally named degP1–16) were found in Arabidopsis thaliana, and the chloroplast location was predicted or experimentally proven for seven proteins. The cyanobacterium Synechocystis sp. PCC6803 contains three Deg homologues, HtrA (DegP), HhoA (DegQ) and HhoB (DegS), but their number can vary between one and six in other photosynthetic Prokaryota. Interestingly, all of these proteases are evolutionarily more closely related within one species than proteases with the same names present in other organisms. This means that Deg proteases from A. thaliana are not necessarily the closest relatives of cyanobacterial DegP. Therefore, we propose to change the misleading original name ‘DegP’ to ‘Deg’ for A. thaliana enzymes. Here, we summarize the expression, location and functions of Deg proteases from cyanobacteria and chloroplasts of higher plants, with special emphasis on their role in the photosystem II (PSII) repair cycle under light stress conditions.

Notes: Abstract.  One of the mathematical topics examined in the Old Babylonian period consisted of calculating the size of a reed which was used to measure either a longitude or the perimeter of a rectangle or trapezium. These subjects were solved, probably, applying the geometric construction called completing the square. In this paper, we analyse the problem texts on the tablets AO 6770 (5), Str 368, VAT 7532, and VAT 7535.

Notes: Abstract.  Historical accounts of the work of J. J. Thomson find a contradiction in his work. On the one hand, he is presented as a Maxwellian theoretical physicist dealing with a typically Victorian entity, the ether. On the other hand, the analysis of his experimental work at the Cavendish seems to have little connection with his mathematical work. In this paper, I discuss the metaphysical views of J. J. Thomson, and argue that his deep belief in the ultimate continuity of matter can be seen to give a framework to both his theoretical and his experimental work. His metaphysical beliefs were not in the least shaken by the discovery of discrete phenomena and entities, not even by his suggestion of the existence of corpuscles later known as electrons. His formation in Cambridge, together with some ideas that he acquired in his youth at Owens College, Manchester, are the key to understanding his metaphysics and the role it plays in his scientific work.

Notes: Abstract.  In 1768, Kant published a short essay in which he inquired into the possibility of determining the directionality of space. Kant's central argument invokes the strategy that if one were to demonstrate directionality, then the relational view of space that Leibniz propounded would be refuted. This paper has been considered a major turning point in Kant's philosophical development towards his critical philosophy of transcendental idealism. I demonstrate that in this study, Kant came very close to the modern concept of symmetry. His novel construction of incongruent counterpart (inkongruentes Gegenstück) contains elements essential to the modern notion of symmetry. However, Kant does not consider the incongruent counterparts, which he designates as ‘Right’ and ‘Left’, symmetric; rather, he holds the French encyclopaedist view that symmetry is a kind of balance. This study convinced Kant that the solution to the problem of the nature of space lies not in mathematics but in metaphysics. He was wrong in this conclusion, at least with respect to symmetry. The solution was found within the framework of mathematics, that is, solid geometry. In 1794, Legendre recast the traditional encyclopaedist concept of symmetry by calling a certain property of polyhedra symmetrical. The view of Kant is contrasted with that of Legendre by comparing their usages of mirror image as an aid for understanding. While in both cases mirror images are not considered illusions—perhaps for the first time in the history of mirror reflections—the differences are substantial, highlighting the limitation of Kant's position and the great potential of Legendre's new concept of symmetry.

Notes: Mathew Chandrankunnel, Philosophy of Physics, reviewed by Helge KraghDanian Hu, China and Albert Einstein: The Reception of the Physicist and His Theory in China, 1917-1979, reviewed by Helge Kragh

Notes: Abstract.  The present paper offers strong evidence that there was a particularly advanced, for the era, sense and application of geometry in the prehistoric civilization of the island of Thera (Santorini), Greece, ca. 1650 BC. First, by applying an original method, it is demonstrated that specific shapes, depicted on so far unpublished wall paintings initially decorating the third floor of Xeste 3, correspond to advanced geometric configurations with remarkable accuracy. Thus, it is shown that there are configurations corresponding to linear spiral prototypes, others matching elliptical prototypes and sets of points lying on isogonal lines that are radii of regular polygons with 48, 32, and 24 angles. Subsequently, it is shown that the use of geometric archetypes for drawing played a prominent role in the Late Bronze Age Thera civilization. In fact, it is demonstrated that celebrated wall paintings have border lines that impressively match a limited number of linear (Archimedes’) spirals, hyperbolas, and ellipses in a piecewise manner. This practically excludes the probability that these wall paintings were drawn by freehand, while, on the contrary, it strongly suggests that they were mainly drawn by means of geometric stencils.

Notes: The Saros cycle of 223 synodic months played an important role in Late Babylonian astronomy. It was used to predict the dates of future eclipse possibilities together with the times of those eclipses and underpinned the development of mathematical lunar theories. The excess length of the Saros over a whole number of days varies due to solar and lunar anomaly between about 6 and 9 h. We here investigate two functions which model the length of the Saros found in Babylonian sources: a simple zigzag function with an 18-year period presented on the tablet BM 45861 and a function which varies with the month of the year constructed from rules found on the important procedure text TU 11. These functions are shown to model nature very well and to be closely related. We further conclude that these functions are the likely source of the Saros lengths used to calculate the times of predicted eclipses and were probably known by at latest the mid-sixth-century BC.

Notes: Abstract.  Ptolemy provides two explanations of the origin of his highly precise planetary mean motions in the Almagest, asserting in one set of passages that they were obtained directly from analysis of pairs of observations widely spaced in time, but in another passage that they were derived from period relations expressed as corrections to the well-known Babylonian Goal-Year periods. We show that the latter account is true. Moreover, while some of these period relations may have themselves been calibrated through the observations that Ptolemy cites, those for Mercury and Saturn can be shown to have had a different origin.

Notes: Abstract.  Heron's Dioptra 35 is the unique witness of an ancient mathematical procedure for finding the great arc distance between two cities using methods of ancient spherical astronomy and simultaneous observations of a lunar eclipse. This paper provides a new study of the text, with mathematical and historical commentary. I argue that Heron's account is a summary of some longer work of mathematical astronomy or geography, which made extensive use of the analemma, an ancient model of the celestial sphere. Heron's text can be used to show the utility of the analemma model, both as a theoretical device and as a computational tool.

Notes: Abstract.  In modern discourse about the history of science, it seems to be widely accepted that at the end of the nineteenth century, Germany was one of the leading countries in the production of science. In the past, historians of science tried to trace back a specific ‘German style’ of science that—in combination with other factors—determined this German dominance around 1900, especially in the life sciences. Considering the theoretical concept of ‘national styles’, it has to be kept in mind that around 1900, contemporaries already proclaimed ‘national styles’ of science as representations of national identity. Thus, the question arises as to how far existing historiographical conceptions of national styles may include earlier claims and prejudices. Careful reconstructions of contemporary discourses on national styles and inquiries into the ‘stylisation’ of a dominant, successful ‘German style’ are necessary. One of the contemporary critics of a ‘German style’ of science was the physiologist Jacques Loeb (1859–1924), who emigrated to the USA in 1891. Loeb corresponded regularly with the physicist and philosopher Ernst Mach (1838–1916). Ernst Mach can be considered Loeb's intellectual father with whom he corresponded about strategic, philosophical, and epistemological questions. Using the Loeb–Mach correspondence, the aim of the paper is to reconstruct Loeb's conception of a ‘German style’ of science and its differences to an ‘American style’. Changes in his views are discussed as well as the roots of his views and some of their consequences. Finally, Loeb's ideas on national styles and his working profiles before and after his emigration are compared to historiographical analyses of ‘American’ or ‘German’ styles of science around 1900.

Notes: Books reviewed: 

 Giovanni Dondi, Tractatus Astrarii (Geneva: Librairie Droz, 2003). Translation and critical edition by Emmanuel Poulle. 468 pp. hc. ISBN 2-600-00810-1.Bodil Branner; Jesper Lützen (eds.), Caspar Wessel: On the Analytical Representation of Direction (Copenhagen: The Royal Danish Academy of Sciences and Letters, 1999). 143 pp. pb. DKK 500. ISBN 87-7876-158-1.Jesper Luuml;tzen (ed.), Around Caspar Wessel and the Geometric Representation of Complex Numbers (Copenhagen: The Royal Danish Academy of Sciences and Letters, 2001). 293 pp. pb. DKK 300. ISBN 87-7876-236-7.Frank A.J.L. James (ed.), ‘The Common Purposes of Life’: Science and society at the Royal Institution of Great Britain (Aldershot: Ashgate, 2002). 472 pp. £55. hc. ISBN 7546-0960-X.Anastasios Brenner, Les origines françaises de la philosophie des sciences (Paris: Presses Universitaires de France, 2003). 224 pp. ISBN 2-13-053150-4.David Knight, Science and Spirituality: The Volatile Connection (London: Routledge,2003). 230 pp. pb. £18.99. ISBN 0-415-25769-7.Sungook Hong, Wireless: From Marconi's Black Box to the Audion (Cambridge, Mass.: MIT Press, 2001). 248 pp. hc. $34.95 / £23.50. ISBN 0-262-08298-5.Peter J. Ramberg, Chemical Structure, Spatial Arrangement: The Early History of Stereochemistry, 1874-1914 (London: Ashgate, 2003). 424 pp. hc. £57.50. ISBN 0-7546-0397-0.Jean-François Stoffel, Le phénoménalisme problématique de Pierre Duhem, Brussels (Académie royale de Belgique) 2002. 392 pp. Eur. 32 pb. ISBN 2-8031-0190-4.Rienk Vermij, The Calvinist Copernicans:The Reception of the New Astronomy in the Dutch Republic, 1575-1750 (Amsterdam: Koninklijke Nederlandse Akademie van Wetenschappen, 2002). 433 pp. hc. EUR 49. ISBN 90-6984-340-4.Alois Kernbauer (ed.), Die ‘klinische Chemie’ Jahre 1850. Johann Florian Heller Bericht über seine Studienreise in die deutschen Länder, in die Schweiz, nach Frankreich und Belgien im Jahre 1850 (Stuttgart: Franz Steiner Verlag, 2002). 192 pp. EUR 34. ISBN 3-515-08122-4.Ursula Klein, Experiments, Models, Paper Tools. Cultures of Organic Chemistry in the Nineteenth Century (Stanford: Stanford University Press, 2003). xi+305 pp. hc. ISBN 0-8047-4359-2.

Notes: Abstract –  We measured growth of pike larvae (Esox lucius) fed with freshwater and brackish-water zooplankton by monitoring larval wet weight during 18 days. The fish food was analysed for species composition, carbon, nitrogen and fatty acids. Further, we analysed fish larval faecal pellet production. Larval weight was significantly higher in fresh water than in brackish water with natural zooplankton as food. Growth, given as wet weight, showed a significant relationship with zooplankton (〉100 μm) food carbon and highly unsaturated fatty acids, 20:5ω3, 22:6ω3, ω6 fatty acids and the ω3/ω6 fatty acid ratio. Phytoplankton fatty acids (10–50 μm), such as polyunsaturated fatty acids, 20:5ω3, 22:6ω3 and the ω3 fatty acids also correlated strongly with the wet weight of pike larvae. We demonstrated that several factors impact on pike larval growth.

Notes: Abstract –  Predation risk allocation hypothesis predicts that a prey's response to predator depends on prey's previous experience on predator. Here we tested whether the group of three perch respond differentially to pike, predator of perch, depending on the timing of high constant (HC) and high unpredictable (HU) risk periods within low constant risk periods in short-term (10 h) experiments, and whether the response is stronger during a HU risk period than during a HC risk period. Perch clearly erected the dorsal fin in response to predation risk treatments (pike odour only, odour and visible pike). Decrease in activity and increase in shoaling behaviour were observed mainly during high risk periods. However, the perch's responses to pike did not differ statistically between periods of various levels of predation risk or depending on the timing of high risk situations within constant low risk periods, and thus, suggesting that perch respond mainly to changes in the current predation risk.

Notes: Abstract – The Murchison River hardyhead (Craterocephalus cuneiceps) is endemic to the extremely arid Indian Ocean (Pilbara) Drainage Division of Western Australia, where it is found in the Greenough, Hutt, Murchison, Wooramel, Gascoyne and DeGrey rivers, but is absent from numerous rivers within its range. The most likely explanation for the disjunct contemporary distribution is that C. cuneiceps has simply never inhabited the rivers from which it is conspicuously absent (e.g. Ashburton and Fortescue). Biogeographical, geological and palaeoclimatic evidence is presented to support this hypothesis. In the Murchison River, breeding was extremely protracted with recruitment occurring throughout the year. The largest female and male specimens captured were 96 mm total length (TL; 7.73 g) and 86 mm TL (5.57 g), respectively. Sex ratio was 1.09 females:1 male. Batch fecundity ranged from 46 to 454 (mean 167.5 ± 25.7 SE). Estimates for the length at which 50 and 95% of females first spawned were 36.4 and 44.3 mm TL, respectively. Craterocephalus cuneiceps is essentially a detritivore, but also feeds on aquatic invertebrates. Rainfall in the Murchison River catchment is unpredictable and pH, salinity and temperature are variable. A specialised diet, small size and young age at maturity and protracted spawning period, coupled with serial spawning and high fecundity, allows the numerical dominance of this species in competitive, harsh, arid and unpredictable desert environments.

Notes: Abstract –  We examined the effects of two salmonid species, chinook salmon (Oncorhynchus tschwaytscha) and brown trout (Salmo trutta), both exotic species to Lake Ontario, on behaviour and foraging success of juvenile Atlantic salmon (S. salar), a native species to Lake Ontario, in an artificial stream. We found that both exotic species have effects on Atlantic salmon behaviour, but that neither had an effect on foraging success. These results may explain why the Atlantic salmon re-introduction programme in Lake Ontario has had little success, as more than 3 million exotic salmonids are released in Lake Ontario streams annually.

Notes: Abstract –  In past dietary studies kokanee Oncorhynchus nerka were prominent in the diet of Pend Oreille Lake's large piscivores: native bull trout Salvelinus confluentus, cutthroat trout O. clarki and northern pikeminnow Ptychocheilus oregonensis, and introduced lake trout S. namaycush and Kamloops rainbow trout O. mykiss gairdneri. However, kokanee have declined to 10–20% of their former abundance. We therefore initiated this study to understand current predation demands on kokanee and diet overlap among piscivores, using gut content samples and analysis of stable nitrogen (δ15N) and carbon (δ13C) isotopes from the lake's fish and invertebrate community. In gut content samples, kokanee were the main prey item of large [i.e., ≥400 mm total length (TL)] bull and lake trout; a conclusion that was affirmed by stable isotope analysis. Rainbow trout 〉500 mm TL consumed mostly kokanee, thus there was a high degree of diet overlap among large bull, lake and rainbow trout. Small (i.e., 〈400 mm TL) rainbow and cutthroat trout diets overlapped, and were composed mostly of littoral benthic invertebrates. However, gut content and stable isotope analysis did not accord for 400–500 mm TL rainbow trout, small lake trout, and large cutthroat trout. In these instances, a linear mixing model using stable isotope results predicted kokanee consumption for each species, but no kokanee were identified in rainbow or lake trout gut content. Gut content and stable isotope analysis of native northern pikeminnow indicated a diet of mostly littoral benthic invertebrates at smaller (100–150 mm TL) lengths, with kokanee becoming more prominent in the diet of individuals 〉300 mm TL. Percent of kokanee in the diet of northern pikeminnow has declined from a prior study; otherwise piscivore diets have apparently remained unchanged. In this study, judgments as to the feeding of some piscvores, based on gut content alone, would be tenuous because of small sample sizes, but stable isotope analysis provided an efficient means for confirming diets.

Notes: Abstract –  The objectives of this study were, first, to assess the usefulness of otolith microstructure analysis to examine winter size-selective mortality of young-of-the-year (YOY) Atlantic salmon and, secondly, to validate various hypotheses relating to the dynamics of two populations with different winter survival. By examining otolith microstructure, we back-calculated body size at hatching and at emergence of YOY salmon sampled in fall 2000 and in early summer 2001 on the Petite Cascapédia River and the Bonaventure River (Québec, Canada). The results of the study did not reveal any size-selective mortality of YOY salmon in the Petite Cascapédia River, while in the Bonaventure River, size-selective mortality of the smaller individuals of the cohort was detected. This case study allowed not only a better comprehension of the population dynamics of those rivers but demonstrated the usefulness of otolith analysis to detect winter size-selective mortality under a natural environment.

Notes: Abstract – Structural complexity offered by submerged macrophytes was shown to have fundamental effects on interactions between fish and their prey. However, less information is available for littoral reed (Phragmites spp.) stands. A previous field study found juvenile roach and perch to coexist within the reed stands. It was suggested that reed serves mainly as refuge against littoral piscivores, such that coexistence of perch and roach in the reed was externally forced. Several hypotheses were raised to explain why roach nevertheless showed good growth performance. Three of the hypotheses were tested experimentally. In particular, we were interested in how the confinement of fish to one of the reed or open water habitats alters feeding and growth patterns of juvenile age-1 perch and roach. Fish were stocked separately into littoral enclosures for a 3-week period in densities which had been found in the surrounding lake. Development of zooplankton and macroinvertebrate biomasses was observed by sampling the enclosures three times over the experimental period. Individual consumption of prey groups by the fish was calculated with a bioenergetics model, and was compared with prey group biomass in the enclosure treatments. The confinement of fish to one littoral habitat had clear effects on diet composition and growth rates. Roach fed less zooplankton and partially switched to macroinvertebrates in the reed enclosures when compared with the open water treatments, and consequently their growth rates were lower in the reed. Perch preferred macroinvertebrates in both habitats, without any difference in growth rates between the habitats. Effects of fish predation on both zooplankton and macroinvertebrate biomass were low in open water and reed enclosures. Daily consumption rates were only in a few cases higher than 40% of the available biomass of the respective prey group, but mainly were below 10% of available biomass. Therefore, we argue that both the diel horizontal migrations of roach and the relatively low consumption rate of fish when compared with the available resource biomass allow the coexistence of juvenile roach and perch in littoral reed stands.

Notes: Abstract – We analysed the movements of the growing yellow phase using a long-term mark–recapture programme on European eels in a small catchment (the Frémur, France). The results showed that of the yellow eels (〉200 mm) recaptured, more than 90% were recaptured at the original marking site over a long period before the silvering metamorphosis and downstream migration. We conclude that yellow European eels 〉200 mm may adopt a sedentary lifestyle in freshwater area, especially in small catchment.

Notes: Abstract –  Leatherside chub (Snyderichthyes copei Jordan & Gilbert) comprises two lineages (northern and southern) whose centres of geographical range differ by about 3° latitude corresponding to about 30% shorter growing season and about 2 °C lower mean temperature during the growing season. We document patterns of variation in size-at-age among populations of leatherside chub in nature, and we test for variation in intrinsic growth rate of juvenile chub in a common-environment experiment to determine if lineages exhibit different intrinsic growth rates. Northern leatherside chubs at ages 1–3 were about 15% shorter in length compared with southern populations. Variation in hatching date or age at maturity could not account for differences in growth and body size, suggesting that temperature-specific intrinsic growth rates differed among populations. Based on a common environment experiment, we found that reaction norms for temperature-specific growth in length and mass were crossed. At the lower temperature, individuals from the north exhibited higher intrinsic growth in length, and at the higher temperature individuals from the south exhibited higher intrinsic growth in mass. Crossing reaction norms for temperature-specific intrinsic growth rates support a model of local adaptation to thermal regime.

Notes: Abstract –  Understanding factors related to the occurrence of species across multiple spatial and temporal scales is critical to the conservation and management of native fishes, especially for those species at the edge of their natural distribution. We used the concept of hierarchical faunal filters to provide a framework for investigating the influence of habitat characteristics and nonnative piscivores on the occurrence of 10 native fishes in streams of the North Platte River watershed in Wyoming. Three faunal filters were developed for each species: (i) large-scale biogeographic, (ii) local abiotic, and (iii) biotic. The large-scale biogeographic filter, composed of elevation and stream-size thresholds, was used to determine the boundaries within which each species might be expected to occur. Then, a local abiotic filter (i.e., habitat associations), developed using binary logistic-regression analysis, estimated the probability of occurrence of each species from features such as maximum depth, substrate composition, submergent aquatic vegetation, woody debris, and channel morphology (e.g., amount of pool habitat). Lastly, a biotic faunal filter was developed using binary logistic regression to estimate the probability of occurrence of each species relative to the abundance of nonnative piscivores in a reach. Conceptualising fish assemblages within a framework of hierarchical faunal filters is simple and logical, helps direct conservation and management activities, and provides important information on the ecology of fishes in the western Great Plains of North America.

Notes: Abstract –  This study aimed to evaluate otter predation on stocked trout. Large hatchery-reared trout (16–30 cm) were stocked into two Danish rivers with different fish populations. Otter diet before and after trout stocking was determined by analysing 685 spraints, collected regularly during the 35-day study period. Fish composition in the rivers before stocking was assessed by electrofishing. In River Trend, a typical trout river, the proportion of trout in the otter diet increased from 8% before stocking to 33% a few days after stocking. Moreover, trout lengths in the diet changed significantly towards the lengths of stocked trout, indicating that newly stocked trout were preferred to wild trout. In River Skals, dominated by cyprinids, there was no change in otter diet after stocking of hatchery trout, i.e., these were ignored by otter. Otter predation should be taken into account together with fish and bird predation, when stocking is used as a measure for conserving endangered salmonid populations.

Notes: Abstract – Astroblepus ubidiai (Actinopterygii; Siluriformes), which is the only native fish of the highlands of the Province of Imbabura, Ecuador, was abundant in the past in the Imbakucha watershed and adjacent drainages but currently it is restricted to a few isolated refuges. Population viability analysis (PVA) was used to detect critical aspects in the ecology and conservation biology of this unique fish. The annual population growth rate (λ) was estimated for six remnant populations of this Andean catfish using a deterministic matrix population model. Sensitivity and elasticity analyses complemented the PVA by providing constructive insights into vital rates affecting projections and extinction probabilities. Positive population growth rates were found in all the study populations. The high contributions of juvenile survival to the variance of λ and its high elasticity indicated that A. ubidiai population dynamics are highly sensitive to the transition values of this vital rate, which can promptly respond to management or antagonistic perturbations. Allowing fish to survive until the age of first reproduction and permitting the successful reproduction of these individuals will facilitate positive population growth rates, however the very small areas of occupancy, small extent of occurrence and severe fragmentation may still contribute to the extinction risk.

Notes: Abstract – Positively phototactic vendace larvae may be vulnerable to enhanced springtime UV levels unless they are able to avoid them. Experimental results, however, suggested that UV avoidance can exist. In this study field data from eight Finnish lakes with different characteristics were analysed. The aim of the study was to determine whether vendace larvae stayed deeper in the water column during sunny than during cloudy periods because thick cloud cover considerably reduces UV irradiance. In addition, avoidance behaviour of larvae was studied in acrylic tubes placed in a lake and under laboratory conditions. The avoidance of high UV-B exposure existed both in the littoral and pelagic zone of the lakes and in laboratory with low UV attenuation. In the lakes with high UV attenuation, avoidance behaviour did not exist. Vendace larvae may use visible light as an indirect indicator of harmful UV-B irradiance.

Notes: Abstract – Complex interactions between fish predators and their prey have been found in structurally complex habitats built by submerged macrophytes. In contrast, the role of comparably structured littoral reed stands in shaping biotic interactions has not been investigated. We hypothesised that reed stands may be a valuable feeding habitat for juvenile fish, and that perch and roach may segregate along the spatial and dietary niche dimensions between reed and open water habitats. In contrast, the protection effect of reed against predators was assumed to be rather low because of the lower plant volume infested in reed when compared with submerged macrophytes. We analysed biomass and growth of juvenile (age 0 and age 1) perch and roach in littoral reed habitats and in open water habitats in front of the reed in the shallow Lake Müggelsee over 4 months in 2000. Sampling was conducted by point-abundance electrofishing over the full diel cycle (day, dusk, night, dawn). Zooplankton and benthos biomasses were determined in both habitats as well, and habitat-specific diet of fish was assessed during day and night. Roach were more frequent than perch in both habitats. Food of roach included a higher proportion of zooplankton, whereas perch fed more on macroinvertebrates. Overall, diet overlap between the fish groups was high. Diel distribution of fish did not follow the expectations of habitat segregation between perch and roach. Instead, the function of reed as refuge habitat against littoral piscivores (mainly birds) may have caused the strong daytime preference for reed in almost all fish groups, which was partly upset by roach at night. The higher behavioural plasticity of roach may explain their good performance even under the conditions of high structural complexity.

Notes: Abstract –  The otolith composition of age 0+ Allis shad (Alosa alosa) captured in two rivers in the Gironde system in south-west France, the Dordogne and the Garonne, was analysed to establish the natal origin of the fish. Inductively coupled plasma mass spectrometry analyses were used to take measurements of 15 isotopes, among which Co, Fe, Sr and Rb were the most important elements in the discrimination process. It was possible to reclassify each sampled fish into its natal river basin (Garonne or Dordogne) with a high degree of accuracy. Linear discriminant analysis correctly reclassified 91.1% of the Garonne samples and 87.8% of the Dordogne samples (mean success in reclassification in 20 runs ± 1 SD: 89.21 ± 8.6%). Artificial neural networks correctly reclassified 90.1% of the Garonne samples and 81.2% of the Dordogne samples (mean success in reclassification after 1000 training cycles ±1 SD: 85.6 ± 9.1%). Using these tools the present results show that it is possible to assign a natal origin to juvenile shad that hatched in the Dordogne–Garonne basin based on the trace elements in the otolith.

Notes: Abstract – Although homing behaviour has been observed in juvenile Atlantic salmon, brown trout and resident cutthroat trout, this behaviour has not been well studied in juvenile Pacific salmon. We examined the site fidelity and homing behaviour of juvenile coho salmon (Oncorhynchus kisutch) by marking and relocating them within an off-channel habitat. Over 80% of displaced fish returned to the area from which they were originally collected. The proportion of fish that returned to the original location did not vary significantly among three sampling dates. However, we found that this proportion decreased over time in a brackish lagoon when we statistically analysed the data reported by Day (1966). Our results suggest that juvenile coho salmon exhibit strong site fidelity and are able to return to their home ranges after displacement. These behaviours are likely to be important for the winter survival of juvenile coho salmon.

Notes: Abstract – This study documents substantial small-scale spatial variation in age and size at maturity of brown trout (Salmo trutta) found either in allopatry (above major waterfalls) or in sympatry (below waterfalls) with the Alpine bullhead (Cottus poecilopus) in forest streams in south-east Norway. Within two streams, female brown trout above waterfalls tended to delay the onset of sexual maturity, as compared with females from neighbouring sites below the waterfalls. Four additional streams were represented with either an allopatric or a sympatric site. There was considerable variation in age and size at maturity among these streams, but no consistent difference between allopatric and sympatric sites. It is suggested that the spatial variation in maturity responses is influenced by local opportunities for growth, and possibly also survival. Earlier studies in these streams have linked spatial variation in brown trout behaviour and demography to the presence or absence of the Alpine bullhead.

Notes: Abstract –  Three sympatric whitefish (Coregonus lavaretus (L.)) forms, one being pelagic and two benthic, segregate available habitat and food resources in subarctic Lake Muddusjärvi, northern Finland. Zooplankton availability in the lake, food composition, diet-overlap and growth of densely rakered (DR) whitefish were examined during June to September to explore the reasons for the small individual size of the pelagic form. DR whitefish used zooplankton as main food item and prey selection followed zooplankton species density proportions in the lake. Zooplankton density and water temperature was highest in July–August. The average lengths of Bosmina spp., Daphnia spp., Calanoida and Cyclopoida in DR whitefish stomach were higher than in zooplankton sample during June–September, except Calanoida in June. Diet-overlap between DR whitefish age groups was high at all months indicating intercohort resource competition. DR whitefish reached sexual maturity at 3 years of age and at the length of 12 cm, after which somatic growth almost ceased. Reason for the small average size and slow growth of DR whitefish were connected to high diet-overlap between age groups and early sexual maturation.

Notes: Abstract – During 6 November to 24 December 2000, 23 tigerfish [(Hydrocynus vittatus), 30–54 cm] were tagged with radio transmitters in the Zambezi River (Namibia) to record habitat utilisation during low, rising and high water levels. The fish were tracked, on average, every fourth day during 23 November to 18 May. Two movement patterns were detected. Approximately 50% of the fish moved 〈1000 m among tracking surveys, staying within ‘defined’ home ranges. The remaining fish showed consistent site fidelity for periods, with long distance movements (〉1000 m) to new areas among residency periods. Overall, mean distance moved between tracking surveys was 1447 m. Home range size varied among individuals, with a 95% probability of localisation within an average area of 276,978 m2. The fish utilised a mean river stretch of 18,836 m (range = 90–71,840). All the fish were recorded in the main stem, and on average, 95% of the fixes were in the main stem during low water. However, the fish used temporary flooded areas to an increasing extent during the rising and high water period, but did not undertake long-distance migrations into the floodplains. Fish were sometimes near vegetation, but were never recorded into or under vegetation.