ALBERT

Description: Micro-Raman spectroscopy has been used on adult bivalve shells to investigate organic and inorganic shell components but has not yet been applied to bivalve larvae. It is known that the organic matrix of larval shells contains pigments, but less is known about the presence or source of these molecules in larvae. We investigated Raman spectra of seven species of bivalve larvae to assess the types of pigments present in shells of each species and how the ratio of inorganic : organic material changes in a dorso-ventral direction. In laboratory experiments, we reared larvae of three clam species in waters containing different organic signatures to determine if larvae incorporated compounds from source waters into their shells. We found differences in spectra and pigments between most species but found less intraspecific differences. A neural network classifier for Raman spectra classified five out of seven species with greater than 85% accuracy. There were slight differences between the amount and type of pigment present along the shell, with the prodissoconch I and shell margin areas being the most variable. Raman spectra of 1-day-old larvae were found to be differentiable when larvae were reared in waters with different organic signatures. With micro-Raman spectroscopy, it may be possible to identify some unknown species in the wild and trace their natal origins, which could enhance identification accuracy of bivalve larvae and ultimately aid management and restoration efforts.

Description: Tephra provides regional chronostratigraphical marker horizons that can link different climate archives with highly needed accuracy and precision. The results presented in this work exemplify, however, that the intermittent storage of tephra in ice sheets and during its subsequent iceberg transport, especially during glacial stages, constitutes a potential source of serious error for the application of tephrochronology to Nordic Seas and North Atlantic sediment archives. The peak shard concentration of the rhyolitic component of the North Atlantic Ash Zone II (NAAZ-II) tephra complex, often used to correlate marine and ice core records in Marine Isotope Stage (MIS) 3, is shown to lag the eruption event by ca. 100–400 years in some North Atlantic and Norwegian Sea cores. While still allowing for a correlation of archives on millennial timescales, this time delay in deposition is a major obstacle when addressing the lead–lag relationship on short timescales (years to centuries). A precise and accurate determination of lead–lag relationships between archives recording different parts of the climate system is crucial in order to test hypotheses about the processes leading to abrupt climate change and to evaluate results from climate models. Copyright # 2011 John Wiley & Sons, Ltd.

Description: Many of the difficulties of staining plastic embedded tissues for light and electron microscopy derive from physical exclusion of hydrophilic staining reagents by hydrophobic embedding media. Structures which stain most intensely with hydrophilic reagents usually contain less hydrophobic plastic than do non-staining structures. Such incomplete infiltration is apparently caused by exclusion of viscous, hydrophobic monomers by physically dense and/or well hydrated tissue elements. In keeping with this, generalized staining of tissues embedded in hydrophobic media does occur when hydrophobic reagents are used. Staining of plastic-free structures with single hydrophilic reagents or with sequences of such reagents, is, however, largely rate-controlled. The surprising similarity of hydrophilic and hydrophobic plastic embedding media is discussed. Limits of this simple model are explored, with a consideration of the roles of fixative and of monomer-tissue reactions

Description: INTRODUCTION: Lichens are self-sustaining partnerships comprising fungi as shape-forming partners for their enclosed symbiotic algae. They produce a tremendous diversity of metabolites (1050 metabolites described so far). OBJECTIVES: A comparison of metabolic profiles in nine lichen species belonging to three genera (Lichina, Collema and Roccella) by using an optimised extraction protocol, determination of the fragmentation pathway and the in situ localisation for major compounds in Roccella species. METHODS: Chemical analysis was performed using a complementary study combining a Taguchi experimental design with qualitative analysis by high-performance liquid chromatography coupled with mass spectrometry techniques. RESULTS: Optimal conditions to obtain the best total extraction yield were determined as follows: mortar grinding to a fine powder, two successive extractions, solid:liquid ratio (2:60) and 700 rpm stirring. Qualitative analysis of the metabolite profiling of these nine species extracted with the optimised method was corroborated using MS and MS/MS approaches. Nine main compounds were identified: 1 β-orcinol, 2 orsellinic acid, 3 putative choline sulphate, 4 roccellic acid, 5 montagnetol, 6 lecanoric acid, 7 erythrin, 8 lepraric acid and 9 acetylportentol, and several other compounds were reported. Identification was performed using the m/z ratio, fragmentation pathway and/or after isolation by NMR analysis. The variation of the metabolite profile in differently organised parts of two Roccella species suggests a specific role of major compounds in developmental stages of this symbiotic association. CONCLUSION: Metabolic profiles represent specific chemical species and depend on the extraction conditions, the kind of the photobiont partner and the in situ localisation of major compounds.

Description: The seasonal variation of the intrusion of the Philippine Sea Water into the South China Sea was studied by analyzing the historical hydrographic station data in the northern South China Sea and the Philippine Sea. Water masses at 150, 200, and 250 m were classified by discriminant analysis according to their temperature-salinity characteristics. At each depth, most water in the study region was classified into two groups representing the Philippine Sea Water and the South China Sea Water, respectively. The geographic distribution of water masses in the South China Sea shows that the Philippine Sea Water was present along the continental margin south of China between October and January. A westward current in the northern South China Sea in winter was inferred from the distribution of the intrusion water.

Description: Multichannel seismic reflection data were used to determine the evolutionary history of the forearc region of the central Aleutian Ridge. Since at least late Miocene time this sector of the ridge has been obliquely underthrust 30° west of orthogonal convergence by the northwestward converging Pacific plate at a rate of 80–90 km/m.y. Our data indicate that prior to late Eocene time the forearc region was composed of rocks of the arc massif thinly mantled by slope deposits; the forearc region probably lacked both major depositional basins and a tectonically attached accretionary prism of offscraped oceanic deposits. Beginning in latest Miocene or earliest Pliocene time, a zone of outer-arc structural highs and a forearc basin began to form. Formation of these companion intraarc structures may be linked to the late Neogene growth of an accretionary wedge that formed as the result of the deposition of a thick turbidite wedge in the Aleutian Trench. Initial structures of the zone of outer-arc highs formed as the thickening wedge underran, compressively deformed, and uplifted the seaward edge of the arc massif above a landward dipping backstop thrust. Forearc basin strata ponded arcward of the elevating zone of outer-arc highs. However, most younger structures of the zone of outer-arc highs cannot be ascribed simply to the orthogonal effects of an underrunning wedge. Oblique convergence created a major right-lateral shear zone (the Hawley Ridge shear zone) that longitudinally disrupted the zone of outer-arc highs, truncating the seaward flank of the forearc basin and shearing the southern limb of Hawley Ridge, an exceptionally large antiformal outer-arc high structure. Slivers of forearc basement rocks and overlying strata have been transported along the shear zone that is flanked by differentially elevated structures attributed to localized transpressive and transtensional processes. Uplift of Hawley Ridge may be related to the thickening of the arc massif by westward directed basement duplexes. In addition, the forearc is disrupted by structures transverse to the margin that occur where unusually high-stress accumulations have resulted in the rupture of repeated great earthquakes. It is likely that many ancient active margins evolved in tectonic and depositional settings similar to those of the central Aleutian Ridge. Great structural complexity, including the close juxtaposition of coeval structures recording compression, extension, differential vertical movements, and strike-slip displacement, should be expected, even within areas of generally kindred tectonostratigraphic terranes.

Description: Uncertainty over the identity and age of Toba tephras across peninsular India persists, with radiometric age dates contradicting earlier compositional data, which have been used to identify this important Stratigraphie marker as the Youngest Toba Tuff (YTT). To address this issue, new single glass shard analyses have been performed for samples from Morgaon and Bori (north-western India), which have recently been dated at c. 800 ka. These, and indeed all Toba tephra samples thus far analysed from India, show the presence of four populations of glass shards (defined by their Ba/Y ratio), which uniquely identifies them as products of the c. 75-ka Youngest Toba eruption. Confirmation that the YTT fingerprint is characteristic comes from new analyses of Oldest Toba Tuff (OTT) glass shards from five sites in the Indian Ocean. These are compositionally identical to Layer D from the ODP site 758 Sediment core (c. 800 ka), and belong to a single, low-Ba population, clearly different from YTT. These analyses show that there is essentially no reworked OTT material in the YTT eruption, and indicate unequivocally that all known Toba tephra occurrences in India belong to the c. 75-ka Youngest Toba eruption.

Description: Several geochemical anomalies were observed before the Haichen, Longling, Tangshan, and Songpan earthquakes and their strong aftershocks. They included changes in groundwater radon levels; chemical composition of the groundwater (concentration of Ca++, Mg++, Cl−, SO4= and HCO3− ions); conductivity; and dissolved gases such as H2, CO2, etc. In addition, anomalous changes in water color and quality were observed before these large earthquakes. Before some events gases escaped from the surface, and there were reports of "ground odors" being smelled by local residents. The large amount of radon data can be grouped into long-term and short-term anomalies. The long-term anomalies have a radon emission build up time of from a few months to more than a year. The short-term anomalies have durations from a few hours or less to a few months.

Description: Fucoidan, a sulfated polysaccharide in brown seaweed, has various biological activities including anti-tumor activity. We investigated the effects of fucoidan on the apoptosis of human promyeloid leukemic cells and fucoidan-mediated signaling pathways. Fucoidan induced apoptosis of HL-60, NB4, and THP-1 cells, but not K562 cells. Fucoidan treatment of HL-60 cells induced activation of caspases-8, -9, and -3, the cleavage of Bid, and changed mitochondrial membrane permeability. Fucoidan-induced apoptosis, cleavage of procaspases, and changes in the mitochondrial membrane permeability were efficiently blocked by depletion of mitogen-activated protein kinase (MAPK) kinase kinase 1 (MEKK1), and inhibitors of MAPK kinase 1 (MEK1) and c Jun NH2-terminal kinase (JNK). The phosphorylation of extracellular signal-regulated kinase 1/2 (ERK1/2) and JNK was increased in fucoidan-treated HL-60, NB4, and THP-1 cells, but not K562 cells. ERK1/2 activation occurred at earlier times than JNK activation and JNK activation was blocked by MEK1 inhibitor. In addition, fucoidan-induced apoptosis was inhibited by addition of glutathione and/or L-NAME, and fucoidan decreased intracellular glutathione concentrations and stimulated nitric oxide (NO) production. Buthionine-[R,S]-sulfoximine rendered HL-60 cells more sensitive to fucoidan. Depletion of MEKK1 and inhibition of MEK1 restored the intracellular glutathione content and abrogated NO production, whereas inhibition of JNK activation by SP600125 restored intracellular glutathione content but failed to inhibit NO production in fucoidan-treated HL-60 cells. These results suggest that activation of MEKK1, MEK1, ERK1/2, and JNK, depletion of glutathione, and production of NO are important mediators in fucoidan-induced apoptosis of human leukemic cells

Description: Until reliable procedures have been developed to preserve the phosphorus contained in particulate matter captured by in situ pumps and sediment traps and until these procedures are applied over a wide range of locations and depths in the sea, indirect methods will have to be used to determine the C/P ratio in marine detritus. We have taken two such approaches: (1) the use of C/N ratios for particulates captured in the upper thermocline in conjunction with 02/P and N/P ratios obtained from deconvolutions of ocean chemical data and (2) regression along isopycnals in the deep‐sea waters free of fossil fuel CO2. While neither approach yields a definitive answer, both suggest that a value of 127 carbon atoms per phosphorus atom would be a more appropriate interim value than that of 106 adopted long ago by A. C. Redfield and his associates.

Description: Axial volcanic ridges (AVRs) are found on most slow-spreading mid-ocean ridges and are thought to be the main locus of volcanism there. In this study we present high-resolution mapping of a typical, well-defined AVR on the Mid-Atlantic Ridge at 45°N. The AVR is characterized by “hummocky terrain,” composed typically of hummocks with pillowed or elongate pillowed flanks with pillowed or lobate lava flow summits, often with small haystacks sitting on their highest points. The AVR is surrounded by several areas of “flat seafloor,” composed of lobate and sheet lava flows. The spatial and morphological differences between these areas indicate different eruption processes operating on and off the AVR. Volcanic fissures are found all around and on the AVR, although those with the greatest horizontal displacement are found on the ridge crest and flat seafloor. Clusters of fissures may represent volcanic vents. Extremely detailed comparisons of sediment coverage and examination of contact relations around the AVR suggest that many of the areas of flat seafloor are of a similar age or younger than the hummocky terrain of the AVR. Additionally, all the lavas surveyed have similar degrees of sediment cover, suggesting that the AVR was either built or resurfaced in the same 50 ka time frame as the flat seafloor.

Description: The Norwegian Atlantic Current (NwAC) and its eddy field are examined using data from surface drifters. The data set used spans nearly 20 years, from June 1991 to December 2009. The results are largely consistent with previous estimates, which were based on data from the first decade only. With our new data set, statistical analysis of the mean fields can be calculated with larger confidence. The two branches of the NwAC, one over the continental slope and a second further offshore, are clearly captured. The Norwegian Coastal Current is also resolved. In addition, we observe a semipermanent anticylonic eddy in the Lofoten Basin, a feature seen previously in hydrography and in models. The eddy kinetic energy (EKE) is intensified along the path of the NwAC, with the largest values occurring in the Lofoten Basin. The strongest currents, exceeding 100 cm s−1, occur west of Lofoten. Lateral diffusivities were computed in five domains and ranged from 1–5 × 107 cm2 s−1. The Lagrangian integral time and space scales are 1–2 days and 7–23 km, respectively. The data set allows studies of seasonal and interannual variations as well. The strongest seasonal signal is in the NwAC itself, as the mean flow strengthens by approximately 20% in winter. The EKE and diffusivities on the other hand do not exhibit consistent seasonality in the sampled regions. There are no consistent indications of changes in either the mean or fluctuating surface velocities between the 1990s and 2000s.

Description: Forazoline A, a novel antifungal polyketide with in vivo efficacy against Candida albicans, was discovered using LCMS-based metabolomics to investigate marine-invertebrate-associated bacteria. Forazoline A had a highly unusual and unprecedented skeleton. Acquisition of 13C–13C gCOSY and 13C–15N HMQC NMR data provided the direct carbon–carbon and carbon–nitrogen connectivity, respectively. This approach represents the first example of determining direct 13C–15N connectivity for a natural product. Using yeast chemical genomics, we propose that forazoline A operated through a new mechanism of action with a phenotypic outcome of disrupting membrane integrity.

Description: Samples collected at hourly intervals on May 18–19, 1980, at three sites 200 km downwind from Mount St. Helens, have made possible a detailed reconstruction of the conditions that contribute to the compositional heterogeneity of mineral and glass components observed in distal tephra layers. The air fall tephra deposited at the sites during the first 7 hours of the May 18 eruption is mostly coarse grained, microlite-rich, nonjuvenile glass and feldspar. Grain-size maxima in this initial tephra can be related to the cataclysmic blast at 0832 and a subsequent pulse of the eruption at 1200. Juvenile, microlite-free glass increases in relative abundance at the sampling sites beginning at about 1900. Such a change between nonjuvenile and juvenile tephra can be related to a 5-km increase in column height associated with the last major pulse of the eruption which occurred at 1700 at the volcano. Electron microprobe study of both microlite-rich and microlite-free pumice in the time series samples reveals significant compositional differences. Interstitial glass in nonjuvenile pumice deposited during the first few hours at the sampling sites is enriched in SiO2 and K2O and depleted in TiO2, FeO*, and MgO relative to juvenile glass. By comparison, major element composition of the least evolved juvenile glass sampled during the last several hours of the eruption displays a slight trend toward less evolved composition. Least squares calculations suggest that the more evolved character of the nonjuvenile glass can be explained by greater fractional crystallization brought about by enhanced cooling in a cryptodome prior to eruption, whereas the temporal changes observed in juvenile glass composition during the last several hours of the eruption suggest the presence of a small, slightly zoned magma chamber at depth. Electron microprobe study of glass-coated ilmenites, magnetites, and plagioclases provides the following estimates of the physical conditions in this reservoir: 865°±50°C, PH2O = 2.2 kbar and -log ƒO2 = 11.7. Analyses of bulk pumice, glass and selected mineral phases from May 25, June 12, July 22, and October 16–18 pumices erupted from Mount St. Helens indicate that the bulk pumice (magma) compositions have become slightly more andesitic with time, while mineral and co-existing glass compositions have changed significantly in post-May 18 eruptions with both being more highly evolved than those associated with the May 18 eruption. An application of the magnetite-ilmenite geothermometer to June 12 and July 22 samples indicates temperatures of 919°±30°C and 930°±50°C, respectively. Least squares calculations suggest that such evolved post-May 18 glass and mineral phases can be derived by fractional crystallization of a magma composition like bulk May 18 pumice into approximately 50% crystals and 50% residual liquid. Such partitioning between crystals and residual liquid appears to have occurred on the scale of centimeters and is interpreted as a consequence of accelerated crystallization under reduced water pressure.

Description: Direct estimations of turbulent fluxes and atmospheric stability were performed from a sonic anemometer at 50 m height on a meteorological mast at the Horns Rev wind farm in the North Sea. The stability and flux estimations from the sonic measurements are compared with bulk results from a cup anemometer at 15 m height and potential temperature differences between the water and the air above. Surface flux estimations from the advanced weather research and forecast (WRF) model are also validated against the sonic and bulk data. The correlation between the sonic and bulk estimates of friction velocity is high and the highest among all velocity comparisons. From the sonic–bulk–WRF inter-comparison, it is found that the atmospheric stability measures at the sonic height tend to be closer to the neutral value than the WRF and bulk estimates, which are performed within an air layer closer to the surface, not only from a systematic bulk and WRF under-prediction of the friction velocity when compared with the sonic value but also because of the lower magnitude of the sonic heat flux compared with that from the WRF simulations. Although they are not measured but parameterized or estimated, the bulk–WRF comparisons of friction velocity and 10 m wind speed show good agreement. It is also shown that on a long-term basis, the WRF and bulk estimates of stability are nearly equal and that a correction towards a slightly stable atmospheric condition has to be applied to the long-term wind profile at Horns Rev and at other locations over the North Sea, the correction being larger for points close to the coast.

Description: Mutations or environmental factors that result in reversal of conspicuous left–right asymmetries provide an opportunity to study developmental mechanisms. They may also provide insight into evolutionary changes in asymmetry states within and between species. King crabs (family Lithodidae) have a larger right claw and females typically exhibit a dextrally offset abdomen. Nevertheless, I observed a high incidence of left handedness in laboratory reared box crabs (Lopholithodes foraminatus) and captured the first known egg-bearing female lithodid to exhibit reversed asymmetry. This provided a unique opportunity to characterize the reversed phenotype and to compare the incidence of reversed asymmetry in the offspring of normal and reversed females. Asymmetry of the chelae became apparent in the first postzoeal stage (glaucothoe) and handedness was maintained through subsequent instars. Females with larger left claws developed reversed abdominal asymmetry by the fourth crab stage. No reversed asymmetry was observed in the mandibles of zoea larvae or juveniles of either handedness. The incidence of reversed asymmetry in glaucothoe reared from one reversed and three normal females was high (between 20% and 30%), and independent of maternity (P=0.67). Removal of the right cheliped of fourth stage zoeae, and the major cheliped of glaucothoe, did not reverse the direction of asymmetry. Elevated larval rearing temperature also did not affect the frequency of reversed individuals. This lack of evidence for either heritability or induction of handedness is enigmatic. Further investigation of reversed asymmetry in lithodid crabs may provide valuable insights into the development and evolution of bilateral asymmetries.

Description: The well-known caldera of Thira (Santorini), Greece, was not formed during a single eruption but is composed of two overlapping calderas superimposed upon a complex volcanic field that developed along a NE trending line of vents. Before the Minoan eruption of 1400 B.C., Thira consisted of three Java shields in the northern half of the island and a flooded depression surrounded by tuff deposits in the southern half. Andesitic lavas formed the overlapping shields of the north and were contemporaneous with and, in many places, interbedded with the southern tuff deposits. Although there appears to be little difference between the composition of magmas erupted, differences in eruption style indicate that most of the activity in the northern half of the volcanic field was subaerial, producing lava flows, whereas in the south, eruptions within a flooded depression produced a sequence of mostly phreatomagmatic tuffs. Many of these tuffs are plastered onto the walls of what appears to have been an older caldera, most probably associated with an eruption of rhyodacitic tephra 100,000 years ago. The Minoan eruption of about 1400 B.C. had four distinct phases, each reflecting a different vent geometry and eruption mechanism. The Minoan activity was preceded by minor eruptions of fine ash. (1) The eruption began with a Plinian phase, from subaerial vent(s) located on the easternmost of the lava shields. (2) Vent(s) grew toward the SW into the flooded depression. Subsequent activity deposited large-scale base surge deposits during vent widening by phreatomagmatic activity. (3) The third eruptive phase was also phreatomagmatic and produced 60% of the volume of the Minoan Tuff. This activity was nearly continuous and formed a large featureless tuff ring with poorly defined bedding. This deposit contains 5–40% lithic fragments that are typical of the westernmost lava shield and appears to have been erupted when caldera collapse began. (4) The last phase consisted of eruption of ignimbrites from vent(s) on the eastern shield, not yet involved in collapse. Collapse continued after eruption of the ignimbrites with foundering of the eastern half of the caldera. Total volume of the collapse was about 19 km3, overlapping the older caldera to form the caldera complex visible today. Intracaldera eruptions have formed the Kameni Islands along linear vents concomitant with vents that may have been sources for the Minoan Tuff.

Description: Eutrophication, coupled with loss of herbivory due to habitat degradation and overharvesting, has increased the frequency and severity of macroalgal blooms worldwide. Macroalgal blooms interfere with human activities in coastal areas, and sometimes necessitate costly algal removal programmes. They also have many detrimental effects on marine and estuarine ecosystems, including induction of hypoxia, release of toxic hydrogen sulphide into the sediments and atmosphere, and the loss of ecologically and economically important species. However, macroalgal blooms can also increase habitat complexity, provide organisms with food and shelter, and reduce other problems associated with eutrophication. These contrasting effects make their overall ecological impacts unclear. We conducted a systematic review and meta-analysis to estimate the overall effects of macroalgal blooms on several key measures of ecosystem structure and functioning in marine ecosystems. We also evaluated some of the ecological and methodological factors that might explain the highly variable effects observed in different studies. Averaged across all studies, macroalgal blooms had negative effects on the abundance and species richness of marine organisms, but blooms by different algal taxa had different consequences, ranging from strong negative to strong positive effects. Blooms' effects on species richness also depended on the habitat where they occurred, with the strongest negative effects seen in sandy or muddy subtidal habitats and in the rocky intertidal. Invertebrate communities also appeared to be particularly sensitive to blooms, suffering reductions in their abundance, species richness, and diversity. The total net primary productivity, gross primary productivity, and respiration of benthic ecosystems were higher during macroalgal blooms, but blooms had negative effects on the productivity and respiration of other organisms. These results suggest that, in addition to their direct social and economic costs, macroalgal blooms have ecological effects that may alter their capacity to deliver important ecosystem services.

Description: Transfer of the small gaseous molecules CO2 and NH3 across biological membranes, long thought to occur solely by simple diffusion, is now known to be facilitated by members of two multigene families: aquaporins (AQP) and rhesus (Rh) proteins. Although it is accepted that AQP1 and Rh proteins are involved in CO2 and NH3 transfer, respectively, the idea that a single channel can exhibit selectivity for both gases is controversial. Indeed, studies using the same in vitro model (human red blood cells) have provided evidence both for and against a role for Rh proteins as CO2 channels. Thus, this study was initiated to provide in vivo evidence for a dual function of Rh proteins as ammonia and CO2 channels. Here, we show that in zebrafish (Danio rerio), direct ammonia–CO2 competition experiments in adults or translational knockdowns of Rh proteins in larvae affects both ammonia and CO2 excretion. These results suggest that Rh proteins in zebrafish may be common pathways for transport of ammonia and CO2.

Description: Seismic techniques provide the highest-resolution measurements of the structure of the crust and have been conducted on a worldwide basis. We summarize the structure of the continental crust based on the results of seismic refraction profiles and infer crustal composition as a function of depth by comparing these results with high-pressure laboratory measurements of seismic velocity for a wide range of rocks that are commonly found in the crust. The thickness and velocity structure of the crust are well correlated with tectonic province, with extended crust showing an average thickness of 30.5 km and orogens an average of 46.3 km. Shields and platforms have an average crustal thickness nearly equal to the global average. We have corrected for the nonuniform geographical distribution of seismic refraction profiles by estimating the global area of each major crustal type. The weighted average crustal thickness based on these values is 41.1 km. This value is 10% to 20% greater than previous estimates which underrepresented shields, platforms, and orogens. The average compressional wave velocity of the crust is 6.45 km/s, and the average velocity of the uppermost mantle (Pn velocity) is 8.09 km/s. We summarize the velocity structure of the crust at 5-km depth intervals, both in the form of histograms and as an average velocity-depth curve, and compare these determinations with new measurements of compressional wave velocities and densities of over 3000 igneous and metamorphic rock cores made to confining pressures of 1 GPa. On the basis of petrographic studies and chemical analyses, the rocks have been classified into 29 groups. Average velocities, densities, and standard deviations are presented for each group at 5-km depth intervals to crustal depths of 50 km along three different geotherms. This allows us to develop a model for the composition of the continental crust. Velocities in the upper continental crust are matched by velocities of a large number of lithologies, including many low-grade metamorphic rocks and relatively silicic gneisses of amphibolite facies grade. In midcrustal regions, velocity gradients appear to originate from an increase in metamorphic grade, as well as a decrease in silica content. Tonalitic gneiss, granitic gneiss, and amphibolite are abundant midcrustal lithologies. Anisotropy due to preferred mineral orientation is likely to be significant in upper and midcrustal regions. The bulk of the lower continental crust is chemically equivalent to gabbro, with velocities in agreement with laboratory measurements of mafic granulite. Garnet becomes increasingly abundant with depth, and mafic garnet granulite is the dominant rock type immediately above the Mohorovicic discontinuity. Average compressional wave velocities of common crustal rock types show excellent correlations with density. The mean crustal density calculated from our model is 2830 kg/m3, and the average SiO2 content is 61.8%.

Description: Metagenomic techniques are used to analyse bacterial communities allowing both culturable and unculturable species to be represented. However, the screening of oral metagenomic samples can be hindered by high animal host DNA content. This study evaluated methods for the reduction of human DNA concentrations within oral metagenomic samples. Plaque samples were collected from 27 patients presenting with periodontal disease and treated to remove human DNA using either selective lysis of eukaryotic cells at several buffer concentrations or differential centrifugation after treatment with trypsin and/or detergents. Human and bacterial DNA levels were determined by quantitative polymerase chain reaction (qPCR). The human DNA content of plaque extracts was significantly reduced by all treatments compared with an untreated control (P 〈 0.05). However, differential centrifugation simultaneously reduced the bacterial DNA content unless samples were pretreated with a detergent. Observations of Gram stained samples that were processed using differential centrifugation without detergent suggest that many bacteria remain adhered to human cells. An approach that uses differential centrifugation in parallel with selective lysis is recommended to fully represent the oral microbiota in metagenomic samples, including those tightly adhered to human cells and more delicate bacteria such as Mycoplasma.

Description: The evolution of internal structure plays a pivotal role in the macroscopic response of granular materials to applied loads. A case in point is the so‐called ‘stress–dilatancy relation’, a cornerstone of Soil Mechanics. Numerous attempts have been made to unravel the connection between stress–dilatancy and the evolution of fabric and contact forces in a deforming granular medium. We re‐examine this connection in light of the recent findings on force chain evolution, in particular, that of collective force chain failure by buckling. This study is focussed on two‐dimensional deformation of dense granular assemblies. Analysis of individual and collective force chain bucklings is undertaken using data from a discrete element simulation. It is shown that the kinematics of force chain buckling lead to significant levels of local dilatation being developed in the buckling force chain particles and their confining first‐ring neighbors. Findings from the simulation are used to guide the development of a lattice model of collective, localized force chain buckling. Consideration of the statics and kinematics of this process yields a new stress–dilatancy relation. The physics of buckling, even at its simplest form, introduces a richness into the stress–dilatancy formulation in a way that preserves the essential aspects of fabric evolution, specifically the buckling mode.

Description: Marine myxobacteria (Enhygromyxa, Plesiocystis, Pseudoenhygromyxa, Haliangium) are phylogenetically distant from their terrestrial counterparts. Salimabromide is the first natural product from the Plesiocystis/Enhygromyxa clade of obligatory marine myxobacteria. Salimabromide has a new tetracyclic carbon skeleton, comprising a brominated benzene ring, a furano lactone residue, and a cyclohexane ring, bridged by a seven-membered cyclic moiety. The absolute configuration was deduced from experimental and calculated CD data. Salimabromide revealed antibiotic activity towards Arthrobacter cristallopoietes.

Description: We present a conceptual model of fluid circulation in a ridge flank hydrothermal system, the Mariana Mounds. The model is based on chemical data from pore waters extracted from piston cores and from push cores collected by deep-sea research vessel Alvin in small, meter-sized mounds situated on a local topographic high. These mounds are located within a region of heat flow exceeding that calculated from a conductive model and are zones of strong pore water upflow. We have interpreted the chemical data with time-dependent transport-reaction models to estimate pore water velocities. In the mounds themselves pore water velocities reach several meters per year to kilometers per year. Within about 100 m from these zones of focused upflow velocities decrease to several centimeters per year up to tens of centimeters per year. A larger area of low heat flow surrounds these heat flow and topographic highs, with upwelling pore water velocities less than 2 cm/yr. In some nearby cores, downwelling of bottom seawater is evident but at speeds less than 2 cm/yr. Downwelling through the sediments appears to be a minor source of seawater recharge to the basaltic basement. We conclude that the principal source of seawater recharge to basement is where basement outcrops exist, most likely a scarp about 2–4 km to the east and southeast of the study area.

Description: Cormorants, Phalacocorax spp., have great potential to affect recreational fisheries and have increased substantially in abundance over the last decades in UK inland waters. Fabricated refuges provide a potential means of reducing fish losses, yet the benefits of such structures may be marginal if natural shelters are abundant and favoured, or if strong density-dependence limits refuge use. This study examined the efficacy of artificial shelters in mesocosm enclosures that allowed standardised and replicated observations of roach, Rutilus rutilus (L.), distribution. When given a choice between occupying open water, simulated reedbeds and artificial brushwood shelters, roach used brushwood shelters extensively across a range of fish densities. When fish had a choice of occupying open water or reedbeds offering no overhead cover, they actively avoided reedbeds and used open water almost exclusively. Occupation of reedbeds was positively related to the amount of overhead cover they provided. When artificial brushwood shelters and reedbeds offered complete overhead cover, brushwood shelters were occupied twice as much as reedbeds. Artificial shelters may therefore have wide application in stillwaters with abundant reedbeds unless the reedbeds are coupled with extensive overhead cover.

Description: During a 10-year study more than 2,000 phytoplankton samples were collected from the entire coast of Peru and analyzed. In general, diatoms were the most abundant group of organisms in all seasons. Predominant species were Rhizosolenia delicatula, Skeletonema costatum Thalassiosira subtilis, Thalassionema nitzschioides and several species of the genus Chaetooeros. Dinoflagellates and flagellates were observed frequently during summer. The mean distribution of the phytoplankton concentration during the 10 years shows the existence of several centers with higher cell densities along the coast, coinciding with the areas of more intense and persistent upwelling. Four major centers have been identified: Pimentel (˜6°S), Chimbote (˜9°S), Callao (˜12°S), and Tambo de Mora-Pisco (˜15°S); and two minor centers, Talara (˜4°S) and Ilo (˜17°S). The relative importance of each center seems to change according to the season. The highest phytoplankton concentration tended to be in the northern part of the coast during fall and winter and in the south through spring and summer.

Description: Methane is a potent greenhouse gas and large-scale rapid release of methane from hydrate may have contributed to past abrupt climate change inferred from the geological record. The discovery in 2008 of over 250 plumes of methane gas escaping from the seabed of the West Svalbard continental margin at ~400 m water depth (mwd) suggests that hydrate is dissociating in the present-day Arctic. Here we model the dynamic response of hydrate-bearing sediments over a period of 2300 years and investigate ocean warming as a possible cause for present-day and likely future dissociation of hydrate, within 350–800 mwd, west of Svalbard. Future temperatures are given by two climate models, HadGEM2 and CCSM4, and scenarios, Representative Concentration Pathways (RCPs) 8.5 and 2.6. Our results suggest that over the next three centuries 5.3–29 Gg yr−1 of methane may be released to the Arctic Ocean on the West Svalbard margin.

Description: This article compares the quality of Raman images obtained using metallurgical and oil immersion objectives to map complex structures in two and three dimensions. While the performance of these objectives for depth profiling planar structures has been discussed at length in the literature, the same comparison has not yet been made for 3D mapping of complex objects, where additional complications are introduced by non-planar geometries. Studying samples with increasing complexity shows that the oil immersion objective is strongly preferred because it yields brighter images with better contrast, and eliminates some new and confusing artefacts that do not arise with simple planar objects.

Description: Although it has been more than 30 years since the discovery of deep-sea hydrothermal vents, comprehending the interconnections between hydrothermal venting and microbial life remains a challenge. Here we investigate abiotic-biotic linkages in low-temperature hydrothermal biotopes at Desperate and Lilliput on the southern Mid-Atlantic Ridge. Both sites are basalt-hosted and fluids exhibit the expected chemical signatures. However, contrasting crustal permeabilities have been proposed, supporting pervasive mixing at Desperate but restricting circulation at Lilliput. In Desperate fluids, sulfide and O2 were readily available but H2 hardly detectable. Under incubation conditions (oxic unamended, sulfide-spiked, oxic and anoxic H2 -spiked at 18°C), only sulfide oxidation by Thiomicrospira fuelled biomass synthesis. Microbial phylogenies from Desperate incubation experiments resembled those of the natural samples suggesting that the incubation conditions mimicked the environment. In Lilliput fluids, O2 was limited, whereas sulfide and H2 were enriched. Autotrophy appeared to be stimulated by residual sulfide and by amended H2 . Yet, based on bacterial phylogenies only conditions in anoxic H2 -spiked Lilliput incubations appeared similar to parts of the Lilliput habitat. In anoxic H2 -spiked Lilliput enrichments Campylobacteraceae likely supported biomass production through H2 oxidation. We argue that the diverging circulation patterns arising from different subseafloor permeabilities act as major driving forces shaping these biotope structures.

Description: Aftershocks of shallow earthquakes larger than magnitude 7 in the Aleutians, southern Alaska, southeast Alaska, and offshore British Columbia from 1920 to 1970 were relocated by computer in an attempt to delineate the rupture zones of large earthquakes. Plate tectonic theory indicates that gaps in activity for large earthquakes for the past 10's to 100's of years are likely sites of future large earthquakes. Three prominent gaps of this type are delineated: one in southeast Alaska; another in southern Alaska near the epicenters of the great earthquakes of 1899 and 1900; and one in the far western Aleutians. These gaps deserve high priority for study and instrumentation. Large earthquakes appear to be much more regular than smaller shocks in their distributions with respect to space, time, and size. Aftershock zones of events since 1930 that are larger than magnitude 7.8 are longer than 250 km and those less than 7.5 are shorter than 125 km. The rupture zones of events that occurred before 1930 could not be delineated from aftershock locations. Aftershock zones of large earthquakes tend to abut without significant overlap even for rupture zones as long as 1200 km. Nearly the entire Alaska-Aleutian zone from 145°W to 171°E has broken since 1938 in a series of large earthquakes. The rupture zones of five large events appear to form a space-time sequence that progressed from 155°W in 1938 to 171°E in 1965. This sequence is much like the well-known westward progression of activity since 1939 along the North Anatolian fault. Shocks with long rupture zones tend to occur along those parts of the Alaska-Aleutian zone that are relatively simple tectonically. The ends of many aftershock zones of large earthquakes are located at the intersection of major transverse features with the Aleutian arc. Large earthquakes rarely, if ever, reoccur along the same part of a fault zone in less than several tens of years, i.e. within a time less than that for substantial strain accumulation. Events of comparable magnitude that occur soon after some great earthquakes usually involve rupture in a region adjacent to but different from that of the main shock. The March 30, 1965, earthquake of magnitude 7.5, which involved normal faulting in the Aleutian trench, appears to have been triggered by thrust faulting along the adjacent inner margin of the trench in the magnitude 7.9 earthquake of February 4, 1965. Large events of the thrust type are commonly followed within ten years by events involving normal faulting in the adjacent part of the trench. Estimates of average displacements and of the repeat times of great earthquakes from measurements of 20-sec surface waves are systematically too small and do not agree with the meager historic record of great shocks. Other estimates of repeat times vary from 30 to 850 years, but neither of these extremes appears to be typical. The aftershock zone of the April 1, 1946, Aleutian earthquake, which generated one of the largest and most widespread seismic sea waves in the Pacific during this century, was very small. A large displacement of the ocean floor may be responsible for the generation of the large sea wave. An average displacement of 2.4 to 4.1 meters was calculated from amplitudes of 100-sec waves.

Description: We measured the respiratory isotope effect ϵresp for seven representative unicellular marine organisms. The bacterium Pseudomonas halodurans, the diatom Phaeodactylum tricornutum, the phytoflagellates Cryptomonas baltica and Dunaliella tertiolecta, the heterotrophic flagellates Paraphysomonas imperforata and Bodo sp., and the ciliate Uronema sp. exhibit ϵresp values in the range 14-26‰. We also measured ϵresp for three metazoans. The ϵresp for the copepod Acartia tonsa ranged from 17 to 25‰, while two larger organisms, the mollusk Mercenaria mercenaria and the salmon Salmo salmar, respire with a smaller ϵresp of 5-10‰. The average respiratory isotope effect of the dominant marine respirers (the bacteria, microalgae and zooplankton) is about 20 ± 3‰. An ϵresp of this magnitude supports the hypothesis that the photosynthesis-respiration cycle is responsible for the 23.5‰ enrichment in the δ18O ratio of atmospheric O2 relative to seawater (the Dole effect). The large value and high variability in the average ϵresp limits the usefulness of a proposed method using the δ18O of naturally fractionated dissolved O2 in seawater as a tracer of primary production in the oligotrophic ocean.

Description: We review the current understanding of the Dole effect (the observed difference between the δ18O of atmospheric O2 and that of seawater) and its causes, extend the record of variations in the Dole effect back to 130 kyr before present using data on the δ18O of O2 obtained from studying the Vostok ice core (Sowers et al., 1993), and discuss the significance of temporal variations. The Dole effect reflects oxygen isotope fractionation during photosynthesis, respiration, and hydrologic processes (evaporation, precipitation, and evapotranspiration). Our best prediction of the present-day Dole effect, +20.8‰, is considerably lower than the observed value, +23.5‰, and we discuss possible causes of this discrepancy. During the past 130 kyr, the Dole effect has been 0.05‰ lower than the present value, on average. The standard deviation of the Dole effect from the mean has been only ±0.2‰, and the Dole effect is nearly unchanged between glacial maxima and interglacial periods. The small variability in the Dole effect suggests that relative rates of primary production in the land and marine realms have been relatively constant. Most periodic variability in the Dole effect is in the precession band, suggesting that changes in this global biogeochemical term reflects variations in low-latitude land hydrology and productivity or possibly variability in low-latitude oceanic productivity.

Description: 1. The hypothesis that cyanobacteria have higher optimum growth temperatures and higher growth rates at the optimum as compared to chlorophytes was tested by running a controlled experiment with eight cyanobacteria species and eight chlorophyte species at six different temperatures (20–35 °C) and by performing a literature survey. 2. In the experiment, all organisms except the chlorophyte Monoraphidium minutum grew well up to 35 °C. The chlorophyte Chlamydomonas reinhardtii was the fastest-growing organism over the entire temperature range (20–35 °C). 3. Mean optimum growth temperatures were similar for cyanobacteria (29.2 °C) and chlorophytes (29.2 °C). These results are concordant with published data, yielding slightly higher mean optimum growth temperatures for cyanobacteria (27.2 °C) than for chlorophytes (26.3 °C). 4. Mean growth rates of cyanobacteria at 20 °C (0.42 day−1) were significantly lower than those of chlorophytes at 20 °C (0.62 day−1). However, at all other temperatures, there were no differences between mean growth rates of cyanobacteria and chlorophytes. 5. Mean growth rates at the optimum temperature were similar for cyanobacteria (0.92 day−1) and chlorophytes (0.96 day−1). However, analysis of published data revealed that growth rates of cyanobacteria (0.65 day−1) were significantly lower than those of chlorophytes (0.93 day−1) at their optimum temperatures. 6. Although climate warming will probably lead to an intensification of cyanobacterial blooms, our results indicate that this might not be as a result of higher growth rates of cyanobacteria compared with their chlorophyte competitors. The competitive advantage of cyanobacteria can more likely be attributed to their ability to migrate vertically and prevent sedimentation in warmer and more strongly stratified waters and to their resistance to grazing, especially when warming reduces zooplankton body size.

Description: The Swedish UNESCO World Cultural Heritage site of the Birka and Hovgården Iron Age settlements is well suited for the testing of high-resolution archaeological prospection methods. In May 2006 ground-penetrating radar (GPR) and magnetometer test measurements were conducted at Birka, resulting in data of outstanding quality and new archaeological discoveries, but also demonstrating the need for increased spatial sampling regarding GPR prospection at complex Scandinavian sites. Therefore Birka was selected as a testing ground for a pilot study investigating the suitability of the novel multichannel GPR array system MIRA (MALÅ Imaging Radar Array) for efficient, large-scale GPR surveys with very dense spatial sampling. The study was conducted in May 2008 by MALÅ Geoscience AB in collaboration with the archaeological prospection unit of the Swedish National Heritage Board. The very high-resolution three-dimensional GPR pilot survey demonstrated that it is possible to survey 1 ha and more per day with 8 cm cross-line spacing, mapping archaeological structures in unprecedented resolution, such as postholes of only 25 cm diameter. This paper describes the tested technology and methodology as well as the fieldwork and the results of the study.

Description: Much attention has been paid, in recent years, to the potential application of the Ce anomaly, measured in various marine phases, as a paleoceanographic indicator of widespread marine anoxia. In this paper we present and discuss results from recent studies of present‐day rare earth element (REE) distributions (and hence Ce anomaly distributions) in the marine environment which are particularly pertinent to paleoceanography. Subsequently, we review and discuss the validity of the recent literature in which Ce anomalies have been employed as paleoredox indicators.

Description: In many geotechnical systems, it is not uncommon to observe failure in zones of high localized strain called shear bands. The existing models predict the existence and the extent of these localizations, but provide little insight into the micromechanics within the shear bands. This research captures and compares the variation in microstructure both inside and outside of shear bands that formed in physical laboratory plane strain and companion numerical two-dimensional discrete element method (DEM) biaxial compression experiments. Unsheared and sheared laboratory specimens of Ottawa 20–30 sand of varying dilatancy were solidified using a two-stage resin impregnation procedure. The solidified specimens were sectioned and the resulting surfaces were prepared for microstructure observation using optical bright-field microscopy and stereological analysis. Statistical properties of microstructural parameters for sub-regions in a grid pattern and along predefined inclined zones were determined. Similar measurements were performed on 2D DEM simulation specimens at varying strain levels to characterize the evolution of microstructure with increasing strain. The results showed how differences evolved in the mean, standard deviation, and entropy of void distributions with increasing global strain levels. The results indicate how disorder increases and that the material within the shear band does not adhere to the classical concept of critical state, but reaches a terminal void ratio that is largely a function of initial void ratio. Furthermore, there appears to be a transition zone between the far field and the fully formed shear block, as opposed to an abrupt delineation as is traditionally inferred.

Description: Based on quantitative X-ray diffraction mineralogical analysis of cores HU2008029-0006/0008 (857-m water depth) located south of the Davis Strait sill, we seek answers to two questions: (i) the temporal correlation of NW Labrador Shelf Sea Heinrich (H-) and Baffin Bay detrital carbonate (BBDC) events, and (ii) the provenance of the sediments? A sediment-unmixing model (SedUnMix) is used to determine provenance variations. Although 12 radiocarbon dates were obtained there were many age reversals and we favour a depth/age model for HU2008029-0008PC based on correlations to well-dated neighbouring cores north and south of Davis Strait. We find no correlation between H- and BBDC events except for H-0, which appears to be a broadly synchronous event along the NE Canadian margin and is correlative with an episode of major moraine building along this flank of the Laurentide Ice Sheet. Unmixing of the sediment composition based on six potential glacial source regions indicates that the bulk of the sediment in 0008PC is derived from glacial erosion of West Greenland, but is punctuated by intervals when dolomite-rich sediments, derived from outcrops north of Baffin Bay, dominate the composition. Estimated dates on these BBDC events are -13, 25 and 30–38 cal ka BP.

Description: Core HU97048-007PC was recovered from the continental Labrador Sea slope at a water depth of 945 m, 250km seaward from the mouth of Cumberland Sound, and 400km north of Hudson Strait. Cumberland Sound is a structural trough partly floored by Cretaceous mudstones and Paleozoic carbonates. The record extends from 10 to 58 ka. On-board logging revealed a complex series of lithofacies, including buff-colored detrital carbonate-rich sediments [Heinrich (H)-events] frequently bracketed by black facies. We investigate the provenance of these facies using quantitative X-ray diffraction on drill-core samples from Paleozoic and Cretaceous bedrock from the SE Baffin Island Shelf, and on the〈2-mm sediment fraction in a transect of five cores from Cumberland Sound to the NW Labrador Sea. A sediment unmixing program was used to discriminate between sediment sources, which included dolomite-rich sediments from Baffin Bay, calcite-rich sediments from Hudson Strait and discrete sources from Cumberland Sound. Results indicated that the bulk of the sediment was derived from Cumberland Sound, but Baffin Bay contributed to sediments coeval with H-0 (Younger Dryas), whereas Hudson Strait was the source during H-events 1–4. Contributions from the Cretaceous outcrops within Cumberland Sound bracket H-events, thus both leading and lagging Hudson Strait-sourced H-events.

Description: On Syros, high‐pressure metamorphism affects a lithological pile that is composed of, from base to top: (1) the Komito‐Vari granitic basement, (2) a margin sedimentary sequence that is predominantly made of marbles and schists (the Pyrgos and Kastri units), and (3) the Kambos metaophiolitic mélange. The tectonic history occurred in three main stages. During the first stage, in the mid‐Eocene, the Kambos oceanic unit was thrust southward on top of the sedimentary pile. Top‐to‐the‐south‐southwest ductile senses of shear are synchronous with prograde high‐pressure metamorphism and associated with this thrusting event. The second stage corresponds to a top‐to‐the‐northeast ductile shear that affects the whole metamorphic pile and is synchronous with the metamorphic retrogression from eclogite to greenschist facies. However, the Kambos oceanic unit remained partly undeformed, as shown by significant volumes containing undeformed lawsonite pseudomorphs. No major extensional detachment related to this exhumation event outcrops on the island. The localized semibrittle to brittle deformation of the third stage is associated with the postmetamorphic development of (1) a ramp‐flat extensional system at the island scale, whose southward minimum displacement is estimated at approximately 7 km, and (2) two sets of steeply dipping strike‐slip faults with a normal component, trending either east–west or around north–south, indicating that the mean stretching and shortening directions are trending NNE–SSW and ESE–WNW, respectively. This sequence of major tectonic events and their relationship to metamorphism are interpreted within the framework of the subduction of the Pindos Ocean and then of the Adria continental passive margin.

Description: Abundances of 12 species of planktonic foraminifera collected in two plankton tows from the east tropical Atlantic are compared to the chlorophyll content and the temperature of the sea water from which they were collected. As expected from previous work in the tropics, all dominant tropical species occur in greatest abundance within the photic zone. Many species occur in greatest abundances in the seasonal thermocline in association with the maximum chlorophyll concentration, while a few algal symbiont-bearing species occur in greatest abundance in the mixed layer. The δ18O measurements of planktonic foraminifera shells from core top sediment samples confirm the vertical stratification within the photic zone that is suggested by the relationship between hydrography and abundances found in the plankton tows and found in the statistical study by Ravelo et al. [1990]. Comparison between the measured δ18O values of planktonic foraminifera with the predicted δ18O profiles of the overlying water column at three core locations indicate that species abundances in the sediment record the seasonally integrated conditions of the photic zone and suggests that the abundance of a species in the sediment depends on whether the preferred ecological conditions of that species may be found within the photic zone of the overlying water column sometime during the year. Species which calcify below the photic zone have only trace relative abundances. Finally, it appears that the total range of δ18O values of the dominant species approximates the predicted annual δ18O of calcite range in the upper 80 m of the water column.

Description: In virtually every assessment of responses to large-scale crises and disasters, coordination is identified as a critical failure factor. After the crisis, official committees and political opponents often characterize the early phases of the response as a ‘failure to coordinate.’ Not surprisingly, improved coordination quickly emerges as the prescribed solution. Coordination, then, is apparently both the problem and the solution. But the proposed solutions rarely solve the problem: coordination continues to mar most crises and disasters. In the absence of a shared body of knowledge on coordination, it is hard to formulate a normative framework that allows for systematic assessment of coordination in times of crisis. As coordination is widely perceived as an important function of crisis and disaster management, this absence undermines a fair and balanced assessment of crisis management performance. This paper seeks to address that void. We aim to develop a framework that explains both the failure and success of crisis coordination. We do this by exploring the relevant literature, reformulating what coordination is and distilling from research the factors that cause failure and success.

Description: The purine alkaloid caffeine is a major component of many beverages such as coffee and tea. Caffeine and its metabolites theobromine and xanthine have been shown to have antioxidant properties. Caffeine can also act as adenosine-receptor antagonist. Although it has been shown that adenosine and antioxidants promote wound healing, the effect of caffeine on wound healing is currently unknown. To investigate the effects of caffeine on processes involved in epithelialisation, we used primary human keratinocytes, HaCaT cell line and ex vivo model of human skin. First, we tested the effects of caffeine on cell proliferation, differentiation, adhesion and migration, processes essential for normal wound epithelialisation and closure. We used 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) proliferation assay to test the effects of seven different caffeine doses ranging from 0·1 to 5 mM. We found that caffeine restricted cell proliferation of keratinocytes in a dose-dependent manner. Furthermore, scratch wound assays performed on keratinocyte monolayers indicated dose-dependent delays in cell migration. Interestingly, adhesion and differentiation remained unaffected in monolayer cultures treated with various doses of caffeine. Using a human ex vivo wound healing model, we tested topical application of caffeine and found that it impedes epithelialisation, confirming in vitro data. We conclude that caffeine, which is known to have antioxidant properties, impedes keratinocyte proliferation and migration, suggesting that it may have an inhibitory effect on wound healing and epithelialisation. Therefore, our findings are more in support of a role for caffeine as adenosine-receptor antagonist that would negate the effect of adenosine in promoting wound healing.

Description: Pore water has been analyzed from sediment cores taken from three areas on the eastern flank of the Juan de Fuca Ridge as part of FlankFlux 90, a study of hydrothermal circulation through mid-ocean ridge flanks. Seismic reflection and heat flow surveys (Davis et al., 1992a) indicate that the three areas differ in sediment thickness, basement topography, abundance of outcrops, basement temperature, and fraction of heat lost by advection versus conduction. Area 1 is on 0.6 Ma crust with nearly continuous basement outcrop, area 2 is on 1.3 Ma crust over the first buried ridge parallel to the present ridge axis, and area 3 is on 3.5–3.8 Ma crust over two axis-parallel buried ridges that penetrate the sediment cover in three locations. Each area includes a hydrothermal system in which seawater flows into basement, reacts with crustal basalt, and then exits basement either through the sediment or directly into the overlying water column. As constrained by concentrations of sulfate and lithium in the pore waters, at least some seawater enters basement in all three areas without reacting fully with the overlying sediment, even where no outcrops are known nearby. Speeds of up welling of pore water through the sediment have been estimated by fitting profiles of dissolved magnesium and chlorinity, which behave conservatively in these areas, to numerical time-dependent transport models. The estimated velocities range from 〈0.1 to 7.4 cm/yr; faster flows probably occur but were not sampled. Upwelling speed correlates positively with heat flow and basement highs and negatively with sediment thickness. The correlation with heat flow differs from area 2 to area 3 along with differences in physical properties of the turbidite sediment. We have documented pore water upwelling through sediment up to 100 m thick. We estimate that upwelling continues at decreasing speeds through sediment up to 160 m thick, corresponding to a heat flow of 0.44 W/m2 in area 2 and 0.3 W/m2 in area 3. Concentrations of magnesium and chlorinity in the altered seawater upwelling from basement are uniform within each area but differ from one area to the next. Both species remain at the bottom seawater concentration in area 1, where basement is cooled to 〈10°C at the base of the sediments mainly by advection. The concentration of magnesium decreases with increasing basement temperature in areas 2 and 3 to a minimum of 2.5 mmol/kg at about 90°C in area 3. The transition from largely advective to largely conductive heat loss occurs over only 20 km between areas 1 and 2 and corresponds to a dramatic change in the composition of fluid circulating through basement, as the uppermost basement is heated from 〈10° to 40–50°C. Chlorinity of the basement fluid increases above the present-day bottom seawater concentration in areas 2 and 3 and in nearly all other mid-ocean ridge flanks studied to date, as a result of rock hydration and the higher chlorinity of bottom seawater during the last glacial period. While chlorinity generally correlates positively with uppermost basement temperature in various ridge flank hydrothermal systems, it reaches a maximum in area 2 at only 40°C, probably because alteration there occurs at a lower water/rock ratio than elsewhere. For all mid-ocean ridge flanks studied to date, the temperature at the basement interface correlates better with the fraction of heat lost by advection versus conduction and with the average thickness of the sediment cover than with crustal age.

Description: Geoengineering, especially its potentially fast and high-leverage versions, is often justified as a necessary response to possible future climate emergencies. In this article, we take the notion of ‘necessity’ in international law as a starting point in assessing how rapid, high-leverage geoengineering might be justified legally. The need to specify reliably ‘grave and imminent peril’ makes such a justification difficult because our scientific ability to predict abrupt climate change, for example, as tipping elements, is limited. The time it takes to establish scientific consensus as well as policy acceptance restricts the scope for effective forewarning and so pre-emptive justifications for geoengineering become more tempting. While recognizing that dangerous, large-scale impacts of climate change is becoming increasingly difficult to avoid, the pre-emptive, emergency frame is problematic. We suggest that arguments from emergency operate on a high level of uncertainty and tend toward hubristic attempts to shape the future, as well as tending to close down rather than open up space for deliberation. We conclude that the emergency frame is not likely to go away, that ignoring or repressing it is a dangerous response, and that more effort is required to defuse and disarm emergency rhetoric.

Description: In May 2006 high-resolution measurements using ground-penetrating radar (GPR) and magnetic gradiometer systems conducted over selected areas at the site of the Viking Age settlement and trading place Birka in central Sweden demonstrated the suitability of these methods for archaeological prospection of Scandinavian proto-urban settlements. The non-invasive geophysical surveys revealed numerous structural details of the settlement: houses, property boundaries, track-ways, buried remains of the town ramparts dating from different building periods, including a gate, were mapped with a manually operated single-channel GPR system and a four-channel magnetometer array. The combination of these two prospection methods, state-of-the-art data processing and visualization and archaeological interpretation within a geographical information system resulted in valuable new information about the UNESCOWorld Cultural Heritage Site Birka-Hovgården.We present methodology and results of this first archaeological prospection case study conducted in 2006.

Description: An examination of 311 intraplate earthquakes in the Australian plate portion of the Pacific Ocean basin reported from 1918 to 1990 reveals that only 113 events are reliably intraplate, with most of the rest relocating to active trenches and transforms. The non-random distribution of the reliably intraplate events gives insight into the tectonic stresses present. The central Tasman Sea is mostly aseismic except for a swarm of activity at the predicted site of the Tasmantid hot spot. To the north, the broad regions of the Coral Sea, South Fiji Basin and Lord Howe Rise show very little intraplate seismicity, yet the narrow Norfolk Ridge and Three Kings Rise, caught between the double convergence of the New Hebrides and Tonga subduction zones, support many more earthquakes. High levels of intraplate seismicity in the southern Tasman Sea adjacent to the Macquarie Ridge Complex (MRC) indicate that this region may be undergoing internal deformation due to the unusual nature of the Australia-Pacific plate boundary. Additional support exists in the form of intraplate focal mechanisms similar to those at the plate boundary and a set of parallel gravity rolls which are observed in recent geoid maps. Some aftershocks of the Mw = 8.2 Macquarie Ridge earthquake of 1989 occurred in a fracture zone west of the Macquarie Ridge Complex [Das, 1992], but we have found several earthquakes from as early as 1924 which relocate to this feature, suggesting that its reactivation may be more significant than previously thought. This reactivation of a fossil fracture zone may be the result of the increasing amount of oblique convergence between the Australia and Pacific plates at the Macquarie Ridge Complex, formerly a spreading center, and the stresses associated with subducting recently formed Australian ocean crust beneath the older Pacific plate.

Description: The eastern Mediterranean transient (EMT) was caused by a combination of high‐salinity waters intruding into the Aegean Sea and the two particularly strong winters of 1991–1992 and 1992–1993. The approach in this chapter is to search for specific signatures in the historic hydrographic observations, which date back to 1910. To deal with the problem that up into the 1950s the data not only are of limited precision but also have gaps of about 20 years, it is advantageous to consider the fact that the evolution of the actual EMT is rather well documented over a similar time span. The chapter begins by outlining the characteristics of the current EMT. Thereafter, a selection of suitable hydrographic observations among the available historic data is provided to compare these with signatures expected from the evolution of the actual EMT.

Description: This article presents a fundamental study on the role of particle breakage on the shear behavior of granular soils using the three-dimensional (3-D) discrete element method. The effects of particle breakage on the stress ratio, volumetric strain, plastic deformation, and shear failure behavior of dense crushable specimens undergoing plane strain shearing conditions are thoroughly investigated through a variety of micromechanical analyses and mechanism demonstrations. The simulation of a granular specimen is based on the effective modeling of realistic fracture behavior of single soil particles, which is demonstrated by the qualitative agreement between the results from platen compression simulations and those from physical laboratory tests. The simulation results show that the major effects of particle breakage include the reduction of volumetric dilation and peak stress ratio and more importantly the plastic deformation mechanisms and the shear failure modes vary as a function of soil crushability. Consistent macro- and micromechanical evidence demonstrates that shear banding and massive volumetric contraction depict the two end failure modes of a dense specimen, which is dominated by particle rearrangement–induced dilation and particle crushing–induced compression, respectively, with a more general case being the combination and competition of the two failure modes in the medium range of soil crushability and confining stress. However, it is further shown that a highly crushable specimen will eventually develop a shear band at a large strain because of the continuous decay of particle breakage.

Description: Zonal wind anomalies in the western equatorial Atlantic during late boreal winter to early summer precondition boreal summer cold/warm events in the eastern equatorial Atlantic (EEA) that manifest in a strong interannual Atlantic cold tongue (ACT) variability. Local intraseasonal wind fluctuations, linked to the St. Helena anticyclone, contribute to the variability of cold tongue onset and strength, particularly during years with preconditioned shallow thermoclines. The impact of cold tongue sea surface temperature (SST) anomalies on the wind field in the Gulf of Guinea is assessed. It contributes to the northward migration of humidity and convection and possibly the West African monsoon (WAM) jump. Copyright @ 2010 Royal Meteorological Society

Description: The Mauritanian coastal area is one of the most biologically productive upwelling regions in the world ocean. Shipboard observations carried out during maximum upwelling season and short-term moored observations are used to investigate diapycnal mixing processes and to quantify diapycnal fluxes of nutrients. The observations indicate strong tide-topography interactions that are favored by near-critical angles occurring on large parts of the continental slope. Moored velocity observations reveal the existence of highly nonlinear internal waves and bores and levels of internal wave spectra are strongly elevated near the buoyancy frequency. Dissipation rates of turbulent kinetic energy at the slope and shelf determined from microstructure measurements in the upper 200 m averages to ɛ = 5 × 10−8 W kg−1. Particularly elevated dissipation rates were found at the continental slope close to the shelf break, being enhanced by a factor of 100 to 1000 compared to dissipation rates farther offshore. Vertically integrated dissipation rates per unit volume are strongest at the upper continental slope reaching values of up to 30 mW m−2. A comparison of fine-scale parameterizations of turbulent dissipation rates for shelf regions and the open ocean to the measured dissipation rates indicates deficiencies in reproducing the observations. Diapycnal nitrate fluxes above the continental slope at the base of the mixed layer yielding a mean value of 12 × 10−2 μmol m−2 s−1 are amongst the largest published to date. However, they seem to only represent a minor contribution (10% to 25%) to the net community production in the upwelling region.

Description: Water transported by slabs into the mantle at subduction zones plays key roles in tectonics, magmatism, fluid and volatiles fluxes, and most likely in the chemical evolution of the Earth's oceans and mantle. Yet, incorporation of water into oceanic plates before subduction is a poorly understood process. Several studies suggest that plates may acquire most water at subduction trenches because the ocean crust and uppermost mantle there are intensely faulted caused by bending and/or slab pull, and display anomalously low seismic velocities. The low velocities are interpreted to arise from a combination of fluid-filled fractures associated to normal faulting and mineral transformation by hydration. Mantle hydration by transformation of nominally dry peridotite to water-rich serpentinite could potentially create the largest fluid reservoir in slabs and is therefore the most relevant for the transport of water in the deep mantle. The depth of fracturing by normal-fault earthquakes is usually not well constrained, but could potentially create deep percolation paths for water that might hydrate up to tens of kilometers into the mantle, restrained only by serpentine stability. Yet, interpretation of deep intraplate mineral alteration remains speculative because active-source seismic experiments have sampled only the uppermost few kilometers of mantle, leaving the depth-extent of anomalous velocities and their relation to faulting unconstrained. Here we use a joint inversion of active-source seismic data, and both local and regional earthquakes to map the three dimensional distribution of anomalous velocities under a seismic network deployed at the trench seafloor. We found that anomalous velocities are restrained to the depth of normal-fault micro-earthquake activity recorded in the network, and are considerably shallower than either the rupture depth of teleseismic, normal-fault earthquakes, or the limit of serpentine stability. Extensional micro-earthquakes indicate that each fault in the region slips every 2–3 months which may facilitate regular water percolation. Deeper, teleseismic earthquakes are comparatively infrequent, and possibly do not cause significant fracturing that remains open long enough to promote alteration detectable with our seismic study. Our results show that the stability field of serpentine does not constrain the depth of potential mantle hydration.

Description: Understanding the pre-anthropogenic Pb cycle of central North Pacific deep water has attracted a lot of attention in recent years, partly because of its unique geographical location in that it is a remote gyre system characterized by high dust fluxes and sluggish overturning circulation. However, the factors controlling Pb isotope evolution in this area over the Cenozoic are still controversial and various mechanisms have been proposed in previous studies. Here we report new Pb and Nd isotope time series of four ferromanganese crusts (two from the western Pacific near the Mariana arc and the other two from the central Pacific). Together with previously published records, we discuss for the first time the significance of a persistent and systematic Pb isotopic provinciality recorded by central North Pacific crusts over the Cenozoic. We propose that globally well mixed stratosphere volcanic aerosols could contribute Pb but have not been the major factors controlling the Pb isotope distribution in the central North Pacific over time. Island arc input (and probably enhanced hydrothermal input between about 45 and 20 Ma) likely controlled the Pb isotope provinciality and evolution prior to ~20 Ma, when coeval Pb isotope records in different crusts showed large differences and atmospheric silicate dust flux was extremely low. After the Eocene, in particular after 20 Ma, Asian dust input has become an isotopically resolvable source, while island arc-derived Pb has remained important to balance the dust input and to produce the observed Pb isotope distribution in the central North Pacific during this period.

Description: A realistic primitive-equation model of the Southern Ocean at eddying spatial resolution is used to examine the effect of ocean-surface-velocity dependence of the wind stress on the strength of near-inertial oscillations. Accounting for the ocean-surface-velocity dependence of the wind stress leads to a large reduction of wind-induced near-inertial energy of approximately 40 percent and of wind power input into the near-inertial frequency band of approximately 20 percent. A large part of this reduction can be explained by the leading-order modification to the wind stress if the ocean-surface velocity is included. The strength of the reduction is shown to be modulated by the inverse of the ocean-surface-mixed-layer depth. We conclude that the effect of surface-velocity dependence of the wind stress should be taken into account when estimating the wind-power input into the near-inertial frequency band and when estimating near-inertial energy levels in the ocean due to wind forcing.

Description: The history of climate modeling begins with conceptual models, followed in the 19th century by mathematical models of energy balance and radiative transfer, as well as simple analog models. Since the 1950s, the principal tools of climate science have been computer simulation models of the global general circulation. From the 1990s to the present, a trend toward increasingly comprehensive coupled models of the entire climate system has dominated the field. Climate model evaluation and intercomparison is changing modeling into a more standardized, modular process, presenting the potential for unifying research and operational aspects of climate science

Description: This study presents a new estimate of the oceanic anthropogenic CO2(Cant) sink over the industrial era (1780 to present), from assimilation of potential temperature, salinity, radiocarbon, and CFC-11 observations in a global steady state ocean circulation inverse model (OCIM). This study differs from previous data-based estimates of the oceanic Cant sink in that dynamical constraints on ocean circulation are accounted for, and the ocean circulation is explicitly modeled, allowing the calculation of oceanic Cant storage, air-sea fluxes, and transports in a consistent manner. The resulting uncertainty of the OCIM-estimated Cant uptake, transport, and storage is significantly smaller than the comparable uncertainty from purely data-based or model-based estimates. The OCIM-estimated oceanic Cant storage is 160–166 PgC in 2012, and the oceanic Cant uptake rate averaged over the period 2000–2010 is 2.6 PgC yr−1 or about 30% of current anthropogenic CO2 emissions. This result implies a residual (primarily terrestrial) Cant sink of about 1.6 PgC yr−1 for the same period. The Southern Ocean is the primary conduit for Cant entering the ocean, taking up about 1.1 PgC yr−1 in 2012, which represents about 40% of the contemporary oceanic Cant uptake. It is suggested that the most significant source of remaining uncertainty in the oceanic Cant sink is due to potential variability in the ocean circulation over the industrial era.

Description: Contemporary genetic diversity is the product of both historical and contemporary forces, such as climatic and geological processes affecting range distribution and continuously moulded by evolutionary forces selection, gene flow and genetic drift. Predatory freshwater fishes, such as Northern Pike Esox lucius, commonly exhibit small population sizes, and several local populations are considered endangered. Pike inhabit diverse habitat types, including lakes, rivers and brackish marine waters, thus spanning from small isolated patches to large open marine systems. However, pike population structure from local to regional scales is relatively poorly described, in spite of its significance to developing conservation measures. We analysed microsatellite variation in a total of 1185 North European pike from 46 samples collected across both local and regional scales, as well as over time, to address two overarching questions: Is pike population structure associated with local and/or regional connectivity patterns, and which factors likely have the main influence on the contemporary distribution of genetic diversity? To answer this, we combined estimators of population diversity and structure to assess evidence of whether populations within (i) habitats, (ii) drainage systems and (iii) geographical regions are closer related than among these ranges, and whether patterns are temporally stable. Contrasting previous predictions that genetic drift obscures signals of postglacial colonisation history, we identified clear regional differences in population genetic signatures, suggesting a major effect of drainage divides on colonisation history and connectivity. However, several populations deviated from the general pattern, showing that local processes may be complex and need to be examined case-by-case.

Description: Sedimentation rates (corrected for compaction) from along the passive continental margin of Africa between the Equatorial Fracture Zone and Somalia are used to compare the rates of subsidence of the continental crust since early Mesozoic time. Three distinctive subsidence histories can be identified which correspond with basinal areas that have different structural styles: rifted (west coast), sheared (Equatorial and Agulhas fracture zones) and sunk (zones of vertical tectonics in eastern Africa). A comparison of subsidence rates with other tensional margins (NE USA and the North Sea) and a consideration of the plate tectonic history of the African margins leads to the proposal of a geo and thermodynamic model that takes cognizance of the worldwide mid-Cretaceous rheological discontinuity between taphrogenic and epeirogenic basin formation recognized by Kent, and the more generally accepted, purely plate tectonic driven model of margin subsidence. The new suggestion involves a lower Mesozoic worldwide rise in the geothermal gradient in the lithosphere which produces metamorphism of the base of the continental crust and initiates taphrogenesis along lineaments throughout Gondwanaland. A lowering of the geothermal gradient in the lower Cretaceous produces a switch to epeirogenic subsidence, driven solely by sediment loading and thermal contraction, by Aptian/Albian times. The thermal event facilitated continental separation, and sea floor spreading commenced locally at various times along the active taphrogenic belts. Local thermal and tectonic aberrations associated with this phenomenon over print onto the worldwide pattern of marginal basin subsidence. A further rise in the geothermal gradient may have been responsible for renewed taphrogenesis in eastern Africa in Tertiary times.

Description: Gas hydrate-related bottom-simulating reflectors mark the phase boundary between hydrate and free gas in the subsurface, and therefore may be used to estimate geothermal gradients and hence heat flow. The depth and temperature of the phase boundary depend on the composition of the hydrateforming gas and of the pore fluid. In the absence of direct sampling, these compositions remain unknown. We develop an alternative approach that is less sensitive to compositional uncertainties and can be applied when the bottom-simulating reflector is densely sampled in a region with significant seabed relief. We apply this approach to a three-dimensional seismic dataset from the eastern Black Sea.

Description: Stratospheric ozone depletion and emission of greenhouse gases lead to a trend of the southern annular mode (SAM) toward its high-index polarity. The positive phase of the SAM is characterized by stronger than usual westerly winds that induce changes in the physical carbon transport. Changes in the natural carbon budget of the upper 100 m of the Southern Ocean in response to a positive SAM phase are explored with a coupled ecosystem-general circulation model and regression analysis. Previously overlooked processes that are important for the upper ocean carbon budget during a positive SAM period are identified, namely, export production and downward transport of carbon north of the polar front (PF) as large as the upwelling in the south. The limiting micronutrient iron is brought into the surface layer by upwelling and stimulates phytoplankton growth and export production but only in summer. This leads to a drawdown of carbon and less summertime outgassing (or more uptake) of natural CO2. In winter, biological mechanisms are inactive, and the surface ocean equilibrates with the atmosphere by releasing CO2. In the annual mean, the upper ocean region south of the PF loses more carbon by additional export production than by the release of CO2 into the atmosphere, highlighting the role of the biological carbon pump in response to a positive SAM event.

Description: We combined data sets of measured sedimentary calcium carbonate (CaCO3) and satellite-derived pelagic primary production to parameterize the relation between CaCO3 content on the Antarctic shelves and primary production in the overlying water column. CaCO3 content predicted in this way was in good agreement with the measured data. The parameterization was then used to chart CaCO3 content on the Antarctic shelves all around the Antarctic, using the satellite-derived primary production. The total inventory of CaCO3 in the bioturbated layer of Antarctic shelf sediments was estimated to be 0.5 Pg C. This quantity is comparable to the total CO2 uptake by the Southern Ocean in only one to a few years (dependent on the uptake estimate and area considered), indicating that the dissolution of these carbonates will neither delay ocean acidification in this area nor augment the Southern Ocean CO2 uptake capacity.

Description: The evolution of ridge-hotspot systems is not well understood. In this investigation, satellite-derived marine gravity data are used in conjunction with underway bathymetric and magnetic anomaly profiles to investigate the nature of ridge-hotspot interaction at four sparsely explored systems in the Southern Ocean. These systems illustrate three different stages of ridge-hotspot interaction in which a migrating spreading center approaches a hotspot (Pacific-Antarctic/Louisville), passes over or is captured by the hotspot (Mid-Atlantic/Shona-Discovery), and ultimately migrates away from the hotspot (Southeast Indian/Kerguelen). All of these systems show some evidence of discrete ridge jumps in the direction of the hotspot as the spreading center attempts to relocate toward the hotspot by asymmetric spreading. Interestingly, these ridge jumps show no evidence of propagating offsets as have been seen on many other ridge-hotspot systems. A simple model predicts that typical plume excess temperatures can weaken the lithosphere sufficiently to promote asymmetric spreading and possibly allow a discrete ridge jump. The presence of previously uncharted, obliquely oriented aseismic ridges and gravity lineations between the ridge and the hotspot supports the notion of asthenospheric flux from the plume to the spreading center both before and after the time when the hotspot is ridge centered. The azimuths of the aseismic ridges cannot be explained by plate kinematics alone; they consistently extend from the ends toward the centers of the adjacent spreading segments suggesting some interaction between plume derived asthenospheric flux and local lithospheric structure. The features discussed here also indicate that the transfer of asthenospheric material from the plume to the spreading center is influenced by the local plate boundary configuration and interaction with transform offsets.

Description: We have compiled both laboratory and worldwide field data on electrical conductivity to help understand the physical implications of deep crustal electrical profiles. Regional heat flow was used to assign temperatures to each layer in regional electrical conductivity models; we avoided those data where purely conductive heat flow suggested temperatures more than about 1000°C, substantially higher than solidus temperatures and outside the range of validity of heat flow models. The resulting plots of log conductivity σ versus 1/T demonstrate that even low-conductivity layers (LCL) have conductivities several orders of magnitude higher than dry laboratory samples and that the data can be represented by straight line fits. In addition, technically active regions show systematically higher conductivities than do shield areas. Because volatiles are usually lost in laboratory measurements and their absence is a principal difference between laboratory and field conditions, these materials probably account for the relatively higher conductivities of rocks in situ in the crust; free water in amounts of 0.01–0.1% in fracture porosity could explain crustal conductivities. Other possibilities are graphite, hydrated minerals in rare instances, and sulfur in combination with other volatiles. As most of the temperatures are less than 700°C, partial melting seems likely only in regions of highest heat flow where the conductive temperature profiles are inappropriate. Another result is that at a given temperature, crustal high-conductivity layers (HCL) are more conductive by another order of magnitude and show more scatter than do LCL's. Because the differences between HCL's and LCL's are independent of temperature, we must invoke more than temperature increases as a cause for large conductivity increases; increased fluid concentration in situ seems a probable cause for enhanced conductivities in HCL's. From the point of view of these observations, it does not matter whether the fluids are in communication with the surface or trapped at lithostatic pressures.

Description: Before making a critical evaluation of the crude oil and natural gas prospects for the years to the end of the century, it is necessary to review the geology and structure of the three German hydrocarbon-producing provinces. Furthermore, past exploration, production and reserves should be discussed. The three hydrocarbon-producing provinces are: the NW German Basin, the Upper Rhine Graben and the Molasse Basin, which together make up about 41% of West German territory (Fig. 1). The NW German Basin contains a sedimentary sequence over 8,000 m thick ranging in age from Permian to Quaternary. Gas and oil, the two natural hydrocarbons, are generally confined to separate lower and higher stratigraphic levels respectively (Fig. 2). The NW German Basin is the most important prospective area in West Germany. It extends into the North Sea. The tectonic rift feature of the Upper Rhine Graben originated in the Eocene. The Tertiary fill is over 4,000 m thick. Oil is found mainly in Mesozoic, Eocene and Oligocene rocks; the Miocene and Pliocene reservoir rocks contain natural gas almost exclusively (Fig. 3). The Molasse Basin is part of the foredeep north of the Alpine and Carpathian mountain ranges. The basin is filled with Upper Eocene to Pliocene and Quaternary sediments which, near the Alpine nappes, reach a thickness of over 5,000m (Fig. 4). During this century there were peaks in annual oil-production in 1910, 1940 and 1968 (see Fig. 5). The 1910 peak was the result of drilling activity in the Wietze oilfield. During the period 1934–1945, government financial aid was made available for drilling exploration wells. The success of this collaboration is demonstrated by the oil output in 1940 of 1 × 106 t. After World War II, many different types of oil-bearing structure were found, particularly by reflection seismic techniques in conjunction with detailed stratigraphical and palaeogeographical investigations. The success achieved can be seen by the peak of 8 × 106 t oil production for 1968 (Fig. 5) and in the growth of oil reserves (Fig. 7). Intensive exploration also enabled many new gasfields to be developed, especially in the deeper horizons of the NW German Basin. In 1971, estimated gas reserves reached 360 × 109 m3 (Fig. 11), and annual gas production in 1979 was 20.7 × 109 m3 (731 Bcf) (Fig. 9). There is, no doubt, still scope for the discovery and exploitation of oil and gas in Germany, especially in the NW German Basin where the best prospects for the future lie. This is borne out by two recent offshore oil discoveries and also by the successful application of enhanced recovery methods in the oilfields. The chances of finding more gas at the lower stratigraphic levels are promising now that gas has been discovered in the deeper parts of the Permian basin. The results of massive-hydraulic-fracturing tests in low-permeability pay-horizons are also encouraging. The deeper parts of oil- and gas-producing basins contain interesting prospects and have yet to be tested by ultra-deep wells. Provided that the economic climate remains favourable, there should be no difficulty in finding and supplying German oil and gas in the future. Geologically and technically possible reserves should be converted into proven and/or probable reserves. German crude oil will be available for several years beyond the year 2000, and German natural gas for a far longer time. A production rate of 19 to 20 × 109 m3 of gas per annum is feasible over the next twenty years, and oil production will probably not sink below 3 × 106 t/a in this period.

Description: The combination of the Sunda megathrust and the (strike-slip) Sumatran Fault (SF) represents a type example of slip-partitioning. However, superimposed on the SF are geometrical irregularities that disrupt the local strain field. The largest such feature is in central Sumatra where the SF splits into two fault strands up to 35 km apart. A dense local network was installed along a 350 km section around this bifurcation, registering 1016 crustal events between April 2008 and February 2009. 528 of these events, with magnitudes between 1.1 and 6.0, were located using the double-difference relative location method. These relative hypocentre locations reveal several new features about the crustal structure of the SF. Northwest and southeast of the bifurcation, where the SF has only one fault strand, seismicity is strongly focused below the surface trace, indicating a vertical fault that is seismogenic to ∼15 km depth. By contrast intense seismicity is observed within the bifurcation, displaying streaks in plan and cross-section that indicate a complex system of faults bisecting the bifurcation. In combination with analysis of topography and focal mechanisms, we propose that the bifurcation is a strike-slip duplex system with complex faulting between the two main fault branches.

Description: Correlations between particulate organic carbon (POC) and mineral fluxes in the deep ocean have inspired the inclusion of “ballast effect” parameterizations in carbon cycle models. A recent study demonstrated regional variability in the effect of ballast minerals on the flux of POC in the deep ocean. We have undertaken a similar analysis of shallow export data from the Arctic, Atlantic, and Southern Oceans. Mineral ballasting is of greatest importance in the high-latitude North Atlantic, where 60% of the POC flux is associated with ballast minerals. This fraction drops to around 40% in the Southern Ocean. The remainder of the export flux is not associated with minerals, and this unballasted fraction thus often dominates the export flux. The proportion of mineral-associated POC flux often scales with regional variation in export efficiency (the proportion of primary production that is exported). However, local discrepancies suggest that regional differences in ecology also impact the magnitude of surface export. We propose that POC export will not respond equally across all high-latitude regions to possible future changes in ballast availability.

Description: Because the vast majority of species are well diverged, relatively little is known about the genomic architecture of speciation during the early stages of divergence. Species within recent evolutionary radiations are often minimally diverged from a genomic perspective, and therefore provide rare opportunities to address this question. Here, we leverage the hamlet radiation (Hypoplectrus spp., brightly coloured reef fishes from the tropical western Atlantic) to characterize genomic divergence during the early stages of speciation. Transect surveys and spawning observations in Belize, Honduras and Panama confirm that sympatric barred (H. puella), black (H. nigricans) and butter (H. unicolor) hamlets are phenotypically distinct and reproductively isolated, although hybrid spawnings and individuals with intermediate phenotypes are seen on rare occasions. A survey of approximately 100 000 restriction site-associated SNPs in 126 samples from the three species across the three replicate populations reveals extremely slight genomewide divergence among species (FST = 0.0038), indicating that ecomorphological differences and functional reproductive isolation are maintained in sympatry in a backdrop of extraordinary genomic similarity. Nonetheless, a very small proportion of SNPs (0.05% on average) are identified as FST outliers among sympatric species. Remarkably, a single SNP is identified as an outlier in repeated populations for the same species pair. A minicontig assembled de novo around this SNP falls into the genomic region containing the HoxCa10 and HoxCa11 genes in 10 teleost species, suggesting an important role for Hox gene evolution in this radiation. This finding, if confirmed, would provide a better understanding of the links between micro- and macroevolutionary processes.

Description: The role of biominerals in driving carbon export from the surface ocean is unclear. We compiled surface particulate organic carbon (POC), and mineral ballast export fluxes from 55 different locations in the Atlantic and Southern Oceans. Substantial surface POC export accompanied by negligible mineral export was recorded implying that association with mineral phases is not a precondition for organic export to occur. The proportion of non-mineral associated sinking POC ranged from 0 to 80% and was highest in areas previously shown to be dominated by diatoms. This is consistent with previous estimates showing that transfer efficiency in such regions is low. However we propose that, rather than the low transfer efficiency arising from diatom blooms being inherently characterized by poorly packaged aggregates which are efficiently exported but which disintegrate readily in mid water, it is due to such environments having very high levels of unballasted organic C export.

Description: A numerical algorithm based on Fermat's Principle was developed to simulate the propagation of Global Positioning System (GPS) radio signals in the refractivity field of a numerical weather model. The unique in the proposed algorithm is that the ray-trajectory automatically involves the location of the ground-based receiver and the satellite, i.e. the posed two-point boundary value problem is solved by an implicit finite difference scheme. This feature of the algorithm allows the fast and accurate computation of the signal travel-time delay, referred to as Slant Total Delay (STD), between a satellite and a ground-based receiver. We provide a technical description of the algorithm and estimate the uncertainty of STDs due to simplifying assumptions in the algorithm and due to the uncertainty of the refractivity field. In a first application, we compare STDs retrieved from GPS phase-observations at the German Research Centre for Geosciences Potsdam (GFZ STDs) with STDs derived from the European Center for Medium-Range Weather Forecasts analyses (ECMWF STDs). The statistical comparison for one month (August 2007) for a large and continuously operating network of ground-based receivers in Germany indicates good agreement between GFZ STDs and ECMWF STDs; the standard deviation is 0.5% and the mean deviation is 0.1%.

Description: In the vast Low Nutrient Low-Chlorophyll (LNLC) Ocean, the vertical nutrient supply from the subsurface to the sunlit surface waters is low, and atmospheric contribution of nutrients may be one order of magnitude greater over short timescales. The short turnover time of atmospheric Fe and N supply (〈1 month for nitrate) further supports deposition being an important source of nutrients in LNLC regions. Yet, the extent to which atmospheric inputs are impacting biological activity and modifying the carbon balance in oligotrophic environments has not been constrained. Here, we quantify and compare the biogeochemical impacts of atmospheric deposition in LNLC regions using both a compilation of experimental data and model outputs. A metadata-analysis of recently conducted field and laboratory bioassay experiments reveals complex responses, and the overall impact is not a simple “fertilization effect of increasing phytoplankton biomass” as observed in HNLC regions. Although phytoplankton growth may be enhanced, increases in bacterial activity and respiration result in weakening of biological carbon sequestration. The application of models using climatological or time-averaged non-synoptic deposition rates produced responses that were generally much lower than observed in the bioassay experiments. We demonstrate that experimental data and model outputs show better agreement on short timescale (days to weeks) when strong synoptic pulse of aerosols deposition, similar in magnitude to those observed in the field and introduced in bioassay experiments, is superimposed over the mean atmospheric deposition fields. These results suggest that atmospheric impacts in LNLC regions have been underestimated by models, at least at daily to weekly timescales, as they typically overlook large synoptic variations in atmospheric deposition and associated nutrient and particle inputs. Inclusion of the large synoptic variability of atmospheric input, and improved representation and parameterization of key processes that respond to atmospheric deposition, is required to better constrain impacts in ocean biogeochemical models. This is critical for understanding and prediction of current and future functioning of LNLC regions and their contribution to the global carbon cycle.

Description: Summary 1. Parasitized females in mammals, fish and birds can enhance the immune defence of their offspring by transferring specific antibodies for the embryo. Likewise, social insect mothers transfer immunity despite the fact that invertebrates lack antibodies. 2.  Female trans-generational immune priming is consistent with parental investment theory, because mothers invest more into rearing their offspring than fathers. However, when immune priming is not directly linked to parental care, as is often the case in insects that abandon their eggs after oviposition, both sexes might benefit from protecting their offspring. 3. Using the red flour beetle, Tribolium castaneum, we show that after parental exposure to heat-killed bacteria, trans-generational immune priming occurs through fathers as well as mothers. 4. This novel finding challenges the traditional view that males provide only genes to their offspring in species without paternal care, and raises the possibility of a division of tasks with respect to immune protection between parents.

Description: The importance of the Gulf Stream Extension region in climate and seasonal prediction research is being increasingly recognised. Here we use satellite-derived eddy momentum fluxes to drive a shallow water model for the North Atlantic Ocean that includes the realistic ocean bottom topography. The results show that the eddy momentum fluxes can drive significant transport, sufficient to explain the observed increase in transport of the Gulf Stream following its separation from the coast at Cape Hatteras, as well as the observed recirculation gyres. The model also captures recirculating gyres seen in the mean sea surface height field within the North Atlantic Current system east of the Grand Banks of Newfoundland, including a representation of the Mann Eddy.

Description: A decade of weak convection in the Labrador Sea associated with decreasing water mass transformation, in combination with advective and eddy fluxes into the convection area, caused significant warming of the deep waters in both the central Labrador Sea and boundary current system along the Labrador shelf break. The connection to the export of Deep Water was studied based on moored current meter stations between 1997 and 2009 at the exit of the Labrador Sea, near the shelf break at 5˚3N. More than 100 year -long current meter records spanning the full water column have been analyzed with respect to high frequency variability, decaying from the surface to the bottom layer, and for the annual mean flow, showing intra- to interannual variability but no detectable decadal trend in the strength of the deep and near-bottom flow out of the Labrador Sea.

Description: Recent work shows that multichannel seismic (MCS) systems provide detailed information on the oceans' finestructure. The aim of this paper is to analyze if high order numerical algorithms are suitable to accurately model the extremely weak wavefield scattered by the oceans' finestructures. For this purpose, we generate synthetic shot records along a coincident seismic and oceanographic profile acquired across a Mediterranean salt lens in the Gulf of Cadiz. We apply a 2D finite-difference time-domain propagation model, together with second-order Complex Frequency Shifted Perfectly Matched Layers at the numerical boundaries, using as reference a realistic sound speed map with the lateral resolution of the seismic data. We show that our numerical propagator creates an acoustical image of the ocean finestructures including the salt lens that reproduces with outstanding detail the real acquired one

Description: Recently seismic reflection methods have been successfully applied to oceanographic issues. Here, we present a new approach, combining XBT and CTD surveys with seismic observations, to visualize long sections with a resolution down to a few meters. The challenge to a full investigation of mixing processes has been the tremendous span of spatial scales ranging from hundreds of kilometers to centimeters. Traditional hydrographic observations could only resolve the large scale effects by measuring temperature and salinity profiles at discrete locations typically several kilometers apart, whereas dedicated localized measurements allowed investigation of the ocean fine structure at the other end of the spatial spectrum. The intermediate scales have in contrast been difficult to observe systematically. Here we present temperature and salinity data inverted from seismic observations that cover the intermediate scales and provide a new approach to image mesoscale processes and allow the investigation of their dynamics at unprecedented resolution.

Description: Marine macroalgae are constantly exposed to epibacterial colonizers. The epiphytic bacterial patterns and their temporal and spatial variability on host algae are poorly understood. To investigate the interaction between marine macroalgae and epiphytic bacteria, this study tested if the composition of epibacterial communities on different macroalgae was specific and persisted under varying biotic and abiotic environmental conditions over a 2-year observation time frame. Epibacterial communities on the co-occurring macroalgae Fucus vesiculosus, Gracilaria vermiculophylla and Ulva intestinalis were repeatedly sampled in summer and winter of 2007 and 2008. The epibacterial community composition was analysed by denaturing gradient gel electrophoresis (DGGE) and 16S rRNA gene libraries. Epibacterial community profiles did not only differ significantly at each sampling interval among algal species, but also showed consistent seasonal differences on each algal species at a bacterial phylum level. These compositional patterns re-occurred at the same season of two consecutive years. Within replicates of the same algal species, the composition of bacterial phyla was subject to shifts at the bacterial species level, both within the same season but at different years and between different seasons. However, 7–16% of sequences were identified as species specific to the host alga. These findings demonstrate that marine macroalgae harbour species-specific and temporally adapted epiphytic bacterial biofilms on their surfaces. Since several algal host-specific bacteria were highly similar to other bacteria known to either avoid subsequent colonization by eukaryotic larvae or to exhibit potent antibacterial activities, algal host-specific bacterial associations are expected to play an important role for marine macroalgae.

Description: A wind-driven meso-scale pattern of temperature, salinity and oxygen was found along a transect in the northern Bornholm Basin (southern Baltic Sea). Strong winds caused currents along this transect, which shifted cold intermediate water (minimum: 3.6C) towards the south. The transect was surveyed with a towed CTD-system and hydroacoustics in parallel to investigate the distribution of sprat, Sprattus sprattus balticus (Schn.) in relation to the observed meso-scale pattern. In those parts of the transect where the cold intermediate water was observed, sprat were restricted to water layers below the halocline. In other parts of the transect, sprat moved into higher water layers and occupied a wider depth range. The important factor was temperature, which set an upper limit to the vertical sprat distribution. The development of hydrography, as measured in the field, was evaluated with a hydrodynamic model.

Description: Nitrogen (N) fixation by specialized microorganisms (diazotrophs) influences global plankton productivity because it provides the ocean with most of its bio-available N. However, its global rate and large-scale spatial distribution is still regarded with considerable uncertainty. Here we use a global ocean nitrogen isotope model, in comparison with δ15NO3− observations, to constrain the pattern of N2 fixation across the Pacific Ocean. N2 fixation introduces isotopically light atmospheric N2 from to the ocean (δ15N = 0‰) relative to the oceanic average near 5‰, which makes nitrogen isotopes suitable to infer patterns of N2 fixation. Including atmospheric iron limitation of diazotrophy in the model shifts the pattern of simulated N2 fixation from the South Pacific to the North Pacific and from the East Pacific westward. These changes considerably improve the agreement with meridional transects of available δ15NO3− observations, as well as excess P (PO43− − NO3−/16), suggesting that atmospheric iron deposition is indeed important for N fixation in the Pacific Ocean. This study highlights the potential for using δ15N observations and model simulations to constrain patterns and rates of N fixation in the ocean.

Description: During the last decade, global surface temperatures did not increase as rapidly as in the preceding decades. Although relatively small compared to the observed centennial scale global warming, it has renewed interest in understanding and even predicting climate on time scales of decades, and sparked a community initiative on near‐term prediction that will feature in the fifth intergovernmental panel on climate change assessment report. Decadal prediction, however, is in its infancy, with only a few publications existing. This article has three aims. The first is to make the case for decadal prediction. Decadal fluctuations in global climate similar to that of recent decades were observed during the past century. Associated with large regional changes in precipitation and climate extremes, they are of socioeconomic importance. Climate models, which capture some aspects of observed decadal variability, indicate that such variations might be partly predictable. The second aim is to describe the major challenges to skilful decadal climate prediction. One is poor understanding of mechanisms of decadal climate variability, with climate models showing little agreement. Sparse observations in the past, particularly in the ocean, are also a limiting factor to developing and testing of initialization and prediction systems. The third aim is to stress that despite promising initial results, decadal prediction is in a highly experimental stage, and care is needed in interpreting results and utilizing data from such experiments. In the long‐term, decadal prediction has the potential to improve models, reduce uncertainties in climate change projections, and be of socioeconomic benefit. Copyright © 2010 John Wiley & Sons, Ltd.

Description: The Atlantic‐Mediterranean exchange of water at Gibraltar represents a significant heat and freshwater sink for the North Atlantic and is a major control on the heat, salt and freshwater budgets of the Mediterranean Sea. Consequently, an understanding of the response of the exchange system to external changes is vital to a full comprehension of the hydrographic responses in both ocean basins. Here, we use a synthesis of empirical (oxygen isotope, planktonic foraminiferal assemblage) and modeling (analytical and general circulation) approaches to investigate the response of the Gibraltar Exchange system to Atlantic freshening during Heinrich Stadials (HSs). HSs display relatively flat W–E surface hydrographic gradients more comparable to the Late Holocene than the Last Glacial Maximum. This is significant, as it implies a similar state of surface circulation during these periods and a different state during the Last Glacial Maximum. During HS1, the gradient may have collapsed altogether, implying very strong water column stratification and a single thermal and d18Owater condition in surface water extending from southern Portugal to the eastern Alboran Sea. Together, these observations imply that inflow of Atlantic water into the Mediterranean was significantly increased during HS periods compared to background glacial conditions. Modeling efforts confirm that this is a predictable consequence of freshening North Atlantic surface water with iceberg meltwater and indicate that the enhanced exchange condition would last until the cessation of anomalous freshwater supply into to the northern North Atlantic. The close coupling of dynamics at Gibraltar Exchange with the Atlantic freshwater system provides an explanation for observations of increased Mediterranean Outflow activity during HS periods and also during the last deglaciation. This coupling is also significant to global ocean dynamics, as it causes density enhancement of the Atlantic water column via the Gibraltar Exchange to be inversely related to North Atlantic surface salinity. Consequently, Mediterranean enhancement of the Atlantic Meridional Overturning Circulation will be greatest when the overturning itself is at its weakest, a potentially critical negative feedback to Atlantic buoyancy change during times of ice sheet collapse.

Description: The stratospheric climate and variability from simulations of sixteen chemistryclimate models is evaluated. On average the polar night jet is well reproduced though its variability is less well reproduced with a large spread between models. Polar temperature biases are less than 5 K except in the Southern Hemisphere (SH) lower stratosphere in spring. The accumulated area of low temperatures responsible for polar stratospheric cloud formation is accurately reproduced for the Antarctic but underestimated for the Arctic. The shape and position of the polar vortex is well simulated, as is the tropical upwelling in the lower stratosphere. There is a wide model spread in the frequency of major sudden stratospheric warnings (SSWs), late biases in the breakup of the SH vortex, and a weak annual cycle in the zonal wind in the tropical upper stratosphere. Quantitatively, “metrics” indicate a wide spread in model performance for most diagnostics with systematic biases in many, and poorer performance in the SH than in the Northern Hemisphere (NH). Correlations were found in the SH between errors in the final warming, polar temperatures, the leading mode of variability, and jet strength, and in the NH between errors in polar temperatures, frequency of major SSWs, and jet strength. Models with a stronger QBO have stronger tropical upwelling and a colder NH vortex. Both the qualitative and quantitative analysis indicate a number of common and long‐standing model problems, particularly related to the simulation of the SH and stratospheric variability.

Description: The phosphorus budget of the pre-human modern ocean is constrained applying the most recent estimates of the natural riverine, eolian, and ice-rafted input fluxes, the phosphorus burial in marine sediments, and the hydrothermal removal of dissolved phosphate from the deep ocean. This review of current flux estimates indicates that the phosphorus budget of the ocean is unbalanced since the accumulation of phosphorus in marine sediments and altered oceanic crust exceeds the continental input of particulate and dissolved phosphorus. The phosphorus mass balance is further tested considering the dissolved phosphate distribution in the deep water column, the marine export production of particulate organic matter, rain rates of phosphorus to the seafloor, benthic dissolved phosphate fluxes, and the organic carbon to phosphorus ratios in marine particles. These independent data confirm that the phosphate and phosphorus budgets were not at steadystate in the pre-human global ocean. The ocean is losing dissolved phosphate at a rate of ≥ 11.6 x 1010 mol yr-1 corresponding to a decline in the phosphate inventory of ≥ 4.5 % kyr-1. Benthic data show that phosphate is preferentially retained in pelagic deep-sea sediments where extended oxygen exposure times favor the degradation of particulate organic matter and the up-take of phosphate in manganese and iron oxides and hydroxides. Enhanced C : P regeneration ratios observed in the deep water column (〉400 m water depth) probably reflect the preferential burial of phosphorus in pelagic sediments. Excess phosphate is released from continental margin sediments deposited in low-oxygen environments. The dissolved oxygen threshold value for the enhanced release of dissolved phosphate is ~20 μM. Benthic phosphate fluxes increase drastically when oxygen concentrations fall below this value.

Description: The decay kinetics of superoxide (O2−) reacting with organic matter was examined in oligotrophic waters at, and nearby, the TENATSO ocean observatory adjacent to the Cape Verde archipelago. Superoxide is the short-lived primary photochemical product of colored dissolved organic matter (CDOM) photolysis and also reacts with CDOM or trace metals (Cu, Fe) to form H2O2. In the present work we focused our investigations on reactions between CDOM and superoxide. O2− decay kinetics experiments were performed by adding KO2 to diethylenetriaminepentaacetic acid (DTPA) amended seawater and utilizing an established chemiluminescence technique for the detection of O2− at nM levels. In Cape Verdean waters we found a significant reactivity of superoxide with CDOM with maximal rates adjacent to the chlorophyll maximum, presumably from production of new CDOM from bacteria/phytoplankton. This work highlights a poorly understood process which impacts on the biogeochemical cycling of CDOM and trace metals in the open ocean.

Description: Geophysical datasets sensitive to different physical parameters can be used to improve resolution of Earth's internal structure. Herein, we jointly invert long-period magnetotelluric (MT) data and surface-wave dispersion curves. Our approach is based on a joint inversion using a genetic algorithm for a one-dimensional (1-D) isotropic structure, which we extend to 1-D anisotropic media. We apply our new anisotropic joint inversion to datasets from Central Germany demonstrating the capacity of our joint inversion algorithm to establish a 1-D anisotropic model that fits MT and seismic datasets simultaneously and providing new information regarding the deep structure in Central Germany. The lithosphere/asthenosphere boundary is found at approx. 84 km depth and two main anisotropic layers with coincident most conductive/seismic fast-axis direction are resolved at lower crustal and asthenospheric depths. We also quantify the amount of seismic and electrical anisotropy in the asthenosphere showing an emerging agreement between the two anisotropic coefficients.

Description: A natural carbon dioxide (CO2) seep was discovered during an expedition to the southern German North Sea (October 2008). Elevated CO2 levels of ∼10–20 times above background were detected in seawater above a natural salt dome ∼30 km north of the East-Frisian Island Juist. A single elevated value 53 times higher than background was measured, indicating a possible CO2 point source from the seafloor. Measured pH values of around 6.8 support modeled pH values for the observed high CO2 concentration. These results are presented in the context of CO2 seepage detection, in light of proposed subsurface CO2 sequestering and growing concern of ocean acidification. We explore the boundary conditions of CO2 bubble and plume seepage and potential flux paths to the atmosphere. Shallow bubble release experiments conducted in a lake combined with discrete-bubble modeling suggest that shallow CO2 outgassing will be difficult to detect as bubbles dissolve very rapidly (within meters). Bubble-plume modeling further shows that a CO2 plume will lose buoyancy quickly because of rapid bubble dissolution while the newly CO2-enriched water tends to sink toward the seabed. Results suggest that released CO2 will tend to stay near the bottom in shallow systems (〈200 m) and will vent to the atmosphere only during deep water convection (water column turnover). While isotope signatures point to a biogenic source, the exact origin is inconclusive because of dilution. This site could serve as a natural laboratory to further study the effects of carbon sequestration below the seafloor.

Description: Reconstructions of the spatial pattern of recent multi-decadal sea level trends in the Indian Ocean (IO) indicate a zonally-extended band in the southern tropics where sea level has substantially fallen between the 1960s and 1990s; the decline is consistent with the observed subsurface cooling associated with a shoaling thermocline in this region. Here the origin and spatio-temporal characteristics of these trends are elucidated by a sequence of ocean model simulations. Whereas interannual variability in the southwestern tropical IO appears mainly governed by IO atmospheric forcing, longer term changes in the south tropical IO involve a strong contribution from the western Pacific via wave transmission of thermocline anomalies through the Indonesian Archipelago, and their subsequent westward propagation by baroclinic Rossby waves. The late 20th-century IO subsurface cooling trend reversed in the 1990s, reflecting the major regime shift in the tropical Pacific easterlies associated with the Pacific Decadal Oscillation.

Description: Environmental perturbation, climate change and international commerce are important drivers for biological invasions. Climate anomalies can further increase levels of habitat disturbance and act synergistically to elevate invasion risk. Herein, we use a historical data set from the upper San Francisco Estuary to provide the first empirical evidence for facilitation of invasions by climate extremes. Invasive zooplankton species did not become established in this estuary until the 1970s when increasing propagule pressure from Asia coincided with extended drought periods. Hydrological management exacerbated the effects of post-1960 droughts and reduced freshwater inflow even further, increasing drought severity and allowing unusually extreme salinity intrusions. Native zooplankton experienced unprecedented conditions of high salinity and intensified benthic grazing, and life history attributes of invasive zooplankton were advantageous enough during droughts to outcompete native species and colonise the system. Extreme climatic events can therefore act synergistically with environmental perturbation to facilitate the establishment of invasive species.

Description: Recent seismic evidence suggested that most oceanic plate hydration is associated with trench-outer rise faulting prior to subduction. Hydration at trenches may have a significant impact on the subduction zone water cycle. Previous seismic experiments conducted to the northwest of Nicoya Peninsula, Northern Costa Rica, have shown that the subducting Cocos lithosphere is pervasively altered, which was interpreted to be due to both hydration (serpentinization) and fracturing of the crustal and upper-mantle rocks. New seismic wide-angle reflection and refraction data were collected along two profiles, running parallel to the Middle American trench axis offshore of central Nicaragua, revealing lateral changes of the seismic properties of the subducting lithosphere. Seismic structure along both profiles is characterized by low velocities both in the crust and upper mantle. Velocities in the uppermost mantle are found to be in the range 7.3–7.5 km s−1; thus are 8–10 per cent lower than velocities typical for unaltered peridotites and hence confirm the assumption that serpentinization is a common process at the trench-outer rise area offshore of Nicaragua. In addition, a prominent velocity anomaly occurred within the crust beneath two seamounts. Here, velocity reduction may indicate increased porosity and perhaps permeability, supporting the idea that seamounts serve as sites for water percolation and circulation.

Description: We determined methane (CH4) emissions in a field enclosure experiment in a littoral freshwater marsh under the influence of experimentally simulated warming and enhanced nitrogen deposition. Methane emissions by ebullition from the marsh composed of Phragmites australis were measured with funnel traps deployed in a series of enclosures for two 3 week periods. Diffusive fluxes were estimated on the basis of measured CH4 concentrations and application of Fick's law. Neither diffusive nor ebullitive fluxes of methane were significantly affected by warming or nitrate enrichment, possibly because variability both within and among replicate experimental enclosures was high. Average emission rates resulted primarily from ebullition (0.2–30.3 mmol CH4 m−2 d−1), which were 4 orders of magnitude higher than estimated diffusive fluxes and were of similar importance as the coarsely estimated advective methane transport through plants. Significant correlations between dissolved oxygen and dissolved methane and ebullition flux suggest that methane release from the sediment might feed back positively on methane production by reducing dissolved oxygen in the water column and oxygen flux into the sediment. Nitrate may have a similar effect. Extrapolation of our limited data indicates that total methane fluxes from vegetated littoral zones of temperate lakes may contribute 0.5%–7% of the global natural CH4 emissions. These results emphasize the importance of freshwater marshes as sources of methane emissions to the atmosphere, even when they occupy only relatively small littoral areas. More detailed investigations are clearly needed to assess whether global warming and nitrogen deposition can have climate feedbacks by altering methane fluxes from these wetlands.

Description: The sensitivity of the hydrological cycle to changes in orbital forcing and atmospheric greenhouse gas (GHG) concentrations is assessed using a fully coupled atmosphere-ocean-sea ice general circulation model (Kiel Climate Model). An orbitally-induced intensification of the summer monsoon circulation during the Holocene and Eemian drives enhanced water vapor advection into the Northern Hemisphere, thereby enhancing the rate of water vapor changes by about 30% relative to the rate given by the Clausius-Clapeyron Equation, assuming constant relative humidity. Orbitally-induced changes in hemispheric-mean precipitation are fully attributed to inter-hemispheric water vapor exchange in contrast to a GHG forced warming, where enhanced precipitation is caused by increased both the moisture advection and evaporation. When considering the future climate on millennial time scales, both forcings combined are expected to exert a strong effect.

Description: We present results from a seismic refraction and wide-angle experiment surveying an oceanic core complex on the Mid-Atlantic Ridge at 22°19′N. Oceanic core complexes are settings where petrological sampling found exposed lower crustal and upper mantle rocks, exhumed by asymmetric crustal accretion involving detachment faulting at magmatically starved ridge sections. Tomographic inversion of our seismic data yielded lateral variations of P wave velocity within the upper 3 to 4 km of the lithosphere across the median valley. A joint modeling procedure of seismic P wave travel times and marine gravity field data was used to constrain crustal thickness variations and the structure of the uppermost mantle. A gradual increase of seismic velocities from the median valley to the east is connected to aging of the oceanic crust, while a rapid change of seismic velocities at the western ridge flank indicates profound differences in lithology between conjugated ridge flanks, caused by un-roofing lower crust rocks. Under the core complex crust is approximately 40% thinner than in the median valley and under the conjugated eastern flank. Clear PmP reflections turning under the western ridge flank suggest the creation of a Moho boundary and hence continuous magmatic accretion during core complex formation.

Description: The Mid-Atlantic Ridge south of the equator is a key region for many aspects of spreading axis studies, from biogeography to ridge-hotspot interaction. Despite this, the ridge axis had, until 2004, seen little systematic study. Repeated trips to the area since then have mapped and explored some 900 km of ridge length, from 2° to 14°S. The result is complete bathymetric and side-scan coverage of the axial region and the discovery and characterization of the first hydrothermal vents south of the equator. Such multisegment detailed and interdisciplinary coverage allows us to formulate a general model for the interplay between volcanism, tectonics, and hydrothermalism on a slow spreading ridge. The model defines three basic types of ridge morphology with specific hydrothermal characteristics: (a) a deep, tectonically dominated rift valley where hydrothermalism is seldom associated with volcanism and much more likely confined to long-lived bounding faults; (b) a shallower, segment-center bulge where a combination of repeated magmatic activity and tectonism results in repeated, possibly temporally overlapping periods of hydrothermal activity on the ridge axis; and (c) a very shallow axis beneath which temperatures in all but the uppermost crust are so high that deformation is ductile, inhibiting the formation of high-porosity deep fractures and severely depressing hydrothermal circulation. This model is used together with satellitederived predicted bathymetry to provide forecasts of the best places to look for hydrothermal sites in the remaining unexplored regions of the South Atlantic.