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  • Articles  (1,626)
  • United States  (1,309)
  • Protein Conformation  (320)
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  • 101
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    Nature Publishing Group (NPG)
    Publication Date: 2008-05-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Salzman, Hal -- Lowell, Lindsay -- England -- Nature. 2008 May 1;453(7191):28-30. doi: 10.1038/453028a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Urban Institute, 2100 M Street NW, Washington, DC 20037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18451836" target="_blank"〉PubMed〈/a〉
    Keywords: *Educational Measurement ; Employment/statistics & numerical data ; Humans ; Internationality ; Mathematics ; Science/*education/manpower/*standards/trends ; Students/psychology/statistics & numerical data ; Suicide/statistics & numerical data ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 102
    Publication Date: 2008-02-08
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hand, Eric -- Wadman, Meredith -- Courtland, Rachel -- Waldrop, Mitch -- Tollefson, Jeff -- England -- Nature. 2008 Feb 7;451(7179):610-2. doi: 10.1038/451610a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18256626" target="_blank"〉PubMed〈/a〉
    Keywords: Biomedical Research/economics ; Budgets/*trends ; Child ; Conservation of Energy Resources/economics ; *Federal Government ; Health Surveys ; Humans ; National Institutes of Health (U.S.)/economics ; Physics/*economics ; United States ; United States National Aeronautics and Space Administration/economics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 103
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    Nature Publishing Group (NPG)
    Publication Date: 2008-01-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2008 Jan 24;451(7177):386. doi: 10.1038/451386a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18216823" target="_blank"〉PubMed〈/a〉
    Keywords: *Confidentiality/legislation & jurisprudence ; Conflict of Interest/*legislation & jurisprudence ; Financing, Organized ; National Institutes of Health (U.S.)/*legislation & jurisprudence ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 104
    Publication Date: 2008-07-18
    Description: Partial agonists are ligands that bind to receptors but produce only a small maximum response even at concentrations where all receptors are occupied. In the case of ligand-activated ion channels, it has been supposed since 1957 that partial agonists evoke a small response because they are inefficient at eliciting the change of conformation between shut and open states of the channel. We have investigated partial agonists for two members of the nicotinic superfamily-the muscle nicotinic acetylcholine receptor and the glycine receptor-and find that the open-shut reaction is similar for both full and partial agonists, but the response to partial agonists is limited by an earlier conformation change ('flipping') that takes place while the channel is still shut. This has implications for the interpretation of structural studies, and in the future, for the design of partial agonists for therapeutic use.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2629928/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2629928/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lape, Remigijus -- Colquhoun, David -- Sivilotti, Lucia G -- 074491/Wellcome Trust/United Kingdom -- G0400869/Medical Research Council/United Kingdom -- G0400869(72542)/Medical Research Council/United Kingdom -- England -- Nature. 2008 Aug 7;454(7205):722-7. doi: 10.1038/nature07139. Epub 2008 Jul 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology, University College London, Medical Sciences Building, Gower Street, London WC1E 6BT, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18633353" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Line ; *Drug Partial Agonism ; Glycine/pharmacology ; Humans ; Membrane Potentials/drug effects ; Muscles/metabolism ; Nicotinic Agonists/*pharmacology ; Protein Conformation ; Protein Subunits/agonists/chemistry/genetics/metabolism ; Quaternary Ammonium Compounds/pharmacology ; Rats ; Receptors, Glycine/agonists/chemistry/genetics/metabolism ; Receptors, Nicotinic/chemistry/genetics/*metabolism ; Structure-Activity Relationship ; Taurine/pharmacology
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 105
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    Nature Publishing Group (NPG)
    Publication Date: 2008-09-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Butler, Declan -- England -- Nature. 2008 Sep 18;455(7211):270-1. doi: 10.1038/455270a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18800095" target="_blank"〉PubMed〈/a〉
    Keywords: Education, Graduate/statistics & numerical data ; Industry/economics ; Investments/economics ; *Maps as Topic ; Politics ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 106
    Publication Date: 2008-02-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lane, Neal -- England -- Nature. 2008 Feb 28;451(7182):1050. doi: 10.1038/4511050b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18305522" target="_blank"〉PubMed〈/a〉
    Keywords: *Federal Government ; Leadership ; *Persuasive Communication ; *Politics ; Risk ; *Science/education ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 107
    Publication Date: 2008-04-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hannun, Yusuf A -- England -- Nature. 2008 Apr 17;452(7189):811. doi: 10.1038/452811c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18421328" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Financing, Organized/economics/*organization & administration/*statistics & ; numerical data ; National Institutes of Health (U.S.)/*economics ; Peer Review, Research/*methods ; Pilot Projects ; Research Personnel/*economics/statistics & numerical data ; Retrospective Studies ; United States
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  • 108
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    Nature Publishing Group (NPG)
    Publication Date: 2008-01-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2008 Jan 17;451(7176):223. doi: 10.1038/451223a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18202601" target="_blank"〉PubMed〈/a〉
    Keywords: Astronauts/trends ; Astronomy/economics/trends ; *Federal Government ; Space Flight/trends ; United States ; United States National Aeronautics and Space Administration/economics/*trends
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  • 109
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    Nature Publishing Group (NPG)
    Publication Date: 2008-05-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lawrence, Peter A -- MC_U105184283/Medical Research Council/United Kingdom -- England -- Nature. 2008 May 29;453(7195):588-90. doi: 10.1038/453588a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK. pal@mrc-lmb.cam.ac.uk〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18509422" target="_blank"〉PubMed〈/a〉
    Keywords: Age Factors ; Employee Performance Appraisal ; Employment/*manpower/trends ; Prejudice ; *Research Personnel/economics/statistics & numerical data ; Retirement/economics/*legislation & jurisprudence/trends ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 110
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    Nature Publishing Group (NPG)
    Publication Date: 2008-01-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2008 Jan 3;451(7174):1. doi: 10.1038/451001a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18172461" target="_blank"〉PubMed〈/a〉
    Keywords: Embryonic Stem Cells ; *Federal Government ; Greenhouse Effect ; Humans ; *Politics ; *Research Personnel/psychology ; United States
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    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 111
    Publication Date: 2008-06-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Butler, Declan -- England -- Nature. 2008 Jun 12;453(7197):840-2. doi: 10.1038/453840a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18548043" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomedical Research/economics/*organization & administration/*trends ; Humans ; Medicine/*trends ; National Institutes of Health (U.S.)/economics ; Research Personnel ; Research Support as Topic ; *Technology Transfer ; United States ; Universities/organization & administration
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  • 112
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    Nature Publishing Group (NPG)
    Publication Date: 2008-02-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sarewitz, Daniel -- England -- Nature. 2008 Feb 28;451(7182):1050. doi: 10.1038/4511050a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18305523" target="_blank"〉PubMed〈/a〉
    Keywords: *Federal Government ; *Persuasive Communication ; *Politics ; *Science/standards ; United States
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    Electronic ISSN: 1476-4687
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  • 113
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    Nature Publishing Group (NPG)
    Publication Date: 2008-12-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ledford, Heidi -- England -- Nature. 2008 Nov 20;456(7220):289. doi: 10.1038/456289a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19043832" target="_blank"〉PubMed〈/a〉
    Keywords: Carbon Dioxide/analysis/*pharmacology ; *Ecosystem ; *Forestry/economics ; Nitrogen/analysis/metabolism ; Research/economics/*trends ; Temperature ; Trees/*drug effects ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
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  • 114
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Economou, Anastassios -- England -- Nature. 2008 Oct 16;455(7215):879-80. doi: 10.1038/455879a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18923500" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphatases/*chemistry/*metabolism ; Adenosine Triphosphate/metabolism ; Bacteria/chemistry/cytology/metabolism ; Bacterial Proteins/*chemistry/*metabolism ; Cell Membrane/metabolism ; Crystallography, X-Ray ; Membrane Transport Proteins/*chemistry/*metabolism ; Molecular Motor Proteins/chemistry/metabolism ; Protein Conformation ; Protein Transport
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    Electronic ISSN: 1476-4687
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  • 115
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    Nature Publishing Group (NPG)
    Publication Date: 2008-06-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Harris, Alan -- England -- Nature. 2008 Jun 26;453(7199):1178-9. doi: 10.1038/4531178a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Space Science Institute, 4603 Orange Knoll Avenue, La Canada, California 91011-3364, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18580926" target="_blank"〉PubMed〈/a〉
    Keywords: *Earth (Planet) ; *Environmental Monitoring/history/statistics & numerical data ; History, 20th Century ; History, 21st Century ; *Meteoroids ; United States ; United States National Aeronautics and Space Administration
    Print ISSN: 0028-0836
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  • 116
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    Nature Publishing Group (NPG)
    Publication Date: 2008-07-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Nelson, Bryn -- England -- Nature. 2008 Jul 3;454(7200):132-3. doi: 10.1038/nj7200-132a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18615890" target="_blank"〉PubMed〈/a〉
    Keywords: Emigration and Immigration/legislation & jurisprudence ; *Homosexuality ; Humans ; Research Personnel/*legislation & jurisprudence ; Salaries and Fringe Benefits/*legislation & jurisprudence/statistics & numerical ; data ; United States
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  • 117
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ledford, Heidi -- England -- Nature. 2008 Oct 16;455(7215):841. doi: 10.1038/455841a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18923475" target="_blank"〉PubMed〈/a〉
    Keywords: Financing, Organized/economics/*organization & administration/trends ; Guidelines as Topic ; National Institutes of Health (U.S.)/economics/*organization & administration ; Research Personnel/*economics ; Research Support as Topic/economics/*organization & administration/trends ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 118
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    Nature Publishing Group (NPG)
    Publication Date: 2008-06-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ledford, Heidi -- England -- Nature. 2008 Jun 19;453(7198):963. doi: 10.1038/453963a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18563109" target="_blank"〉PubMed〈/a〉
    Keywords: *Academies and Institutes ; Conflict of Interest/*legislation & jurisprudence ; Drug Industry/economics/legislation & jurisprudence ; National Institutes of Health (U.S.)/legislation & jurisprudence ; Research Personnel/economics/*ethics/*legislation & jurisprudence ; United States ; *Universities
    Print ISSN: 0028-0836
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  • 119
    Publication Date: 2008-09-27
    Description: Opsin, the ligand-free form of the G-protein-coupled receptor rhodopsin, at low pH adopts a conformationally distinct, active G-protein-binding state known as Ops*. A synthetic peptide derived from the main binding site of the heterotrimeric G protein-the carboxy terminus of the alpha-subunit (GalphaCT)-stabilizes Ops*. Here we present the 3.2 A crystal structure of the bovine Ops*-GalphaCT peptide complex. GalphaCT binds to a site in opsin that is opened by an outward tilt of transmembrane helix (TM) 6, a pairing of TM5 and TM6, and a restructured TM7-helix 8 kink. Contacts along the inner surface of TM5 and TM6 induce an alpha-helical conformation in GalphaCT with a C-terminal reverse turn. Main-chain carbonyl groups in the reverse turn constitute the centre of a hydrogen-bonded network, which links the two receptor regions containing the conserved E(D)RY and NPxxY(x)(5,6)F motifs. On the basis of the Ops*-GalphaCT structure and known conformational changes in Galpha, we discuss signal transfer from the receptor to the G protein nucleotide-binding site.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scheerer, Patrick -- Park, Jung Hee -- Hildebrand, Peter W -- Kim, Yong Ju -- Krauss, Norbert -- Choe, Hui-Woog -- Hofmann, Klaus Peter -- Ernst, Oliver P -- England -- Nature. 2008 Sep 25;455(7212):497-502. doi: 10.1038/nature07330.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut fur Medizinische Physik und Biophysik (CC2), Charite - Universitatsmedizin Berlin, Chariteplatz 1, D-10117 Berlin, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18818650" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Motifs ; Animals ; Arginine/chemistry/metabolism ; Binding Sites ; Cattle ; Conserved Sequence ; Crystallization ; Crystallography, X-Ray ; GTP-Binding Protein alpha Subunits/*chemistry/*metabolism ; Models, Biological ; Models, Molecular ; Protein Conformation ; Regeneration ; Retinaldehyde/chemistry/metabolism ; Rhodopsin/chemistry ; Rod Opsins/*chemistry/*metabolism ; Signal Transduction
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  • 120
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    Nature Publishing Group (NPG)
    Publication Date: 2008-11-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hayden, Erika Check -- England -- Nature. 2008 Nov 20;456(7220):288. doi: 10.1038/456288a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19020579" target="_blank"〉PubMed〈/a〉
    Keywords: Age of Onset ; Genetic Predisposition to Disease/genetics ; Genetic Testing/*ethics/*trends ; Great Britain ; Humans ; Oligonucleotide Array Sequence Analysis ; Polymorphism, Single Nucleotide/genetics ; Prenatal Diagnosis/*ethics/*trends ; United States
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  • 121
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    Nature Publishing Group (NPG)
    Publication Date: 2008-03-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Callaway, Ewen -- England -- Nature. 2008 Mar 13;452(7184):148-50. doi: 10.1038/452148a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18337795" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Bioterrorism/*prevention & control ; California ; Citrus/economics/*microbiology ; Florida ; Humans ; Plant Diseases/economics/*microbiology ; Research/*legislation & jurisprudence ; Research Personnel/legislation & jurisprudence ; Rhizobiaceae/isolation & purification ; Security Measures/*legislation & jurisprudence/*organization & administration ; United States ; United States Department of Agriculture/legislation & jurisprudence
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  • 122
    Publication Date: 2008-08-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Adamson, David -- England -- Nature. 2008 Aug 21;454(7207):938. doi: 10.1038/454938b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18719563" target="_blank"〉PubMed〈/a〉
    Keywords: *Culture ; Fertilization in Vitro/*legislation & jurisprudence ; Government Regulation ; Humans ; United States
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  • 123
    Publication Date: 2008-09-12
    Description: Rapidly growing cells produce thousands of new ribosomes each minute, in a tightly regulated process that is essential to cell growth. How the Escherichia coli 16S ribosomal RNA and the 20 proteins that make up the 30S ribosomal subunit can assemble correctly in a few minutes remains a challenging problem, partly because of the lack of real-time data on the earliest stages of assembly. By providing snapshots of individual RNA and protein interactions as they emerge in real time, here we show that 30S assembly nucleates concurrently from different points along the rRNA. Time-resolved hydroxyl radical footprinting was used to map changes in the structure of the rRNA within 20 milliseconds after the addition of total 30S proteins. Helical junctions in each domain fold within 100 ms. In contrast, interactions surrounding the decoding site and between the 5', the central and the 3' domains require 2-200 seconds to form. Unexpectedly, nucleotides contacted by the same protein are protected at different rates, indicating that initial RNA-protein encounter complexes refold during assembly. Although early steps in assembly are linked to intrinsically stable rRNA structure, later steps correspond to regions of induced fit between the proteins and the rRNA.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2720798/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2720798/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Adilakshmi, Tadepalli -- Bellur, Deepti L -- Woodson, Sarah A -- GM60819/GM/NIGMS NIH HHS/ -- P30 EB009998/EB/NIBIB NIH HHS/ -- P41-EB0001979/EB/NIBIB NIH HHS/ -- R01 GM060819/GM/NIGMS NIH HHS/ -- R01 GM060819-10/GM/NIGMS NIH HHS/ -- England -- Nature. 2008 Oct 30;455(7217):1268-72. doi: 10.1038/nature07298. Epub 2008 Sep 10.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉T.C. Jenkins Department of Biophysics, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218-2685, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18784650" target="_blank"〉PubMed〈/a〉
    Keywords: Escherichia coli/chemistry/*genetics/*metabolism ; Kinetics ; Models, Molecular ; *Nucleic Acid Conformation ; Protein Binding ; Protein Conformation ; RNA, Ribosomal, 16S/*genetics/*metabolism ; Ribosomal Proteins/chemistry/genetics/metabolism ; Ribosomes/chemistry/*genetics/*metabolism ; Synchrotrons ; X-Rays
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  • 124
    Publication Date: 2008-10-17
    Description: An important step in the biosynthesis of many proteins is their partial or complete translocation across the plasma membrane in prokaryotes or the endoplasmic reticulum membrane in eukaryotes. In bacteria, secretory proteins are generally translocated after completion of their synthesis by the interaction of the cytoplasmic ATPase SecA and a protein-conducting channel formed by the SecY complex. How SecA moves substrates through the SecY channel is unclear. However, a recent structure of a SecA-SecY complex raises the possibility that the polypeptide chain is moved by a two-helix finger domain of SecA that is inserted into the cytoplasmic opening of the SecY channel. Here we have used disulphide-bridge crosslinking to show that the loop at the tip of the two-helix finger of Escherichia coli SecA interacts with a polypeptide chain right at the entrance into the SecY pore. Mutagenesis demonstrates that a tyrosine in the loop is particularly important for translocation, but can be replaced by some other bulky, hydrophobic residues. We propose that the two-helix finger of SecA moves a polypeptide chain into the SecY channel with the tyrosine providing the major contact with the substrate, a mechanism analogous to that suggested for hexameric, protein-translocating ATPases.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4354775/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4354775/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Erlandson, Karl J -- Miller, Stephanie B M -- Nam, Yunsun -- Osborne, Andrew R -- Zimmer, Jochen -- Rapoport, Tom A -- R01 GM052586/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2008 Oct 16;455(7215):984-7. doi: 10.1038/nature07439.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute and Department of Cell Biology, Harvard Medical School, 240 Longwood Avenue, Boston, Massachusetts 02115, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18923526" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphatases/*chemistry/genetics/*metabolism ; Amino Acid Motifs ; Bacterial Proteins/*chemistry/genetics/*metabolism ; Cross-Linking Reagents ; Disulfides/chemistry/metabolism ; Escherichia coli/*enzymology ; Escherichia coli Proteins/chemistry/metabolism ; Membrane Transport Proteins/*chemistry/genetics/*metabolism ; Models, Biological ; Models, Molecular ; Protein Conformation ; Protein Transport ; Structure-Activity Relationship ; Tyrosine/metabolism
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  • 125
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2008-05-24
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hayden, Erika Check -- England -- Nature. 2008 May 22;453(7194):439. doi: 10.1038/453439a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18497784" target="_blank"〉PubMed〈/a〉
    Keywords: AIDS Vaccines ; Animals ; *Animals, Laboratory ; Biomedical Research/economics/*trends ; *Disease Models, Animal ; Humans ; National Institutes of Health (U.S.) ; *Primates ; United States
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  • 126
    Publication Date: 2008-09-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schiermeier, Quirin -- England -- Nature. 2008 Sep 4;455(7209):6-7. doi: 10.1038/455006a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18769399" target="_blank"〉PubMed〈/a〉
    Keywords: European Union ; Georgia (Republic) ; *International Cooperation ; Politics ; Research/*organization & administration/trends ; Russia ; United States ; *Warfare
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  • 127
    Publication Date: 2008-08-22
    Description: The oxylipin pathway generates not only prostaglandin-like jasmonates but also green leaf volatiles (GLVs), which confer characteristic aromas to fruits and vegetables. Although allene oxide synthase (AOS) and hydroperoxide lyase are atypical cytochrome P450 family members involved in the synthesis of jasmonates and GLVs, respectively, it is unknown how these enzymes rearrange their hydroperoxide substrates into different products. Here we present the crystal structures of Arabidopsis thaliana AOS, free and in complex with substrate or intermediate analogues. The structures reveal an unusual active site poised to control the reactivity of an epoxyallylic radical and its cation by means of interactions with an aromatic pi-system. Replacing the amino acid involved in these steps by a non-polar residue markedly reduces AOS activity and, unexpectedly, is both necessary and sufficient for converting AOS into a GLV biosynthetic enzyme. Furthermore, by combining our structural data with bioinformatic and biochemical analyses, we have discovered previously unknown hydroperoxide lyase in plant growth-promoting rhizobacteria, AOS in coral, and epoxyalcohol synthase in amphioxus. These results indicate that oxylipin biosynthetic genes were present in the last common ancestor of plants and animals, but were subsequently lost in all metazoan lineages except Placozoa, Cnidaria and Cephalochordata.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, Dong-Sun -- Nioche, Pierre -- Hamberg, Mats -- Raman, C S -- R01 AI054444/AI/NIAID NIH HHS/ -- England -- Nature. 2008 Sep 18;455(7211):363-8. doi: 10.1038/nature07307. Epub 2008 Aug 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry and Molecular Biology, University of Texas Medical School, Houston, Texas 77030, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18716621" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Arabidopsis/enzymology/genetics ; Binding Sites ; Catalysis ; Cytochrome P-450 Enzyme System/chemistry/metabolism ; *Evolution, Molecular ; Intramolecular Oxidoreductases/*chemistry/genetics/*metabolism ; Models, Chemical ; Models, Molecular ; Molecular Sequence Data ; Oxylipins/*metabolism ; Point Mutation/genetics ; Protein Conformation
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  • 128
    Publication Date: 2008-07-11
    Description: Ebola virus (EBOV) entry requires the surface glycoprotein (GP) to initiate attachment and fusion of viral and host membranes. Here we report the crystal structure of EBOV GP in its trimeric, pre-fusion conformation (GP1+GP2) bound to a neutralizing antibody, KZ52, derived from a human survivor of the 1995 Kikwit outbreak. Three GP1 viral attachment subunits assemble to form a chalice, cradled by the GP2 fusion subunits, while a novel glycan cap and projected mucin-like domain restrict access to the conserved receptor-binding site sequestered in the chalice bowl. The glycocalyx surrounding GP is likely central to immune evasion and may explain why survivors have insignificant neutralizing antibody titres. KZ52 recognizes a protein epitope at the chalice base where it clamps several regions of the pre-fusion GP2 to the amino terminus of GP1. This structure provides a template for unravelling the mechanism of EBOV GP-mediated fusion and for future immunotherapeutic development.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700032/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2700032/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, Jeffrey E -- Fusco, Marnie L -- Hessell, Ann J -- Oswald, Wendelien B -- Burton, Dennis R -- Saphire, Erica Ollmann -- R01 AI067927/AI/NIAID NIH HHS/ -- R01 AI067927-03/AI/NIAID NIH HHS/ -- R21 AI053423/AI/NIAID NIH HHS/ -- R21 AI053423-02/AI/NIAID NIH HHS/ -- England -- Nature. 2008 Jul 10;454(7201):177-82. doi: 10.1038/nature07082.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Immunology and Microbial Science, The Scripps Research Institute, 10550 North Torrey Pines Road, Mail Drop IMM-2, La Jolla, California 92037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18615077" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antibodies, Viral/genetics/*immunology ; Binding Sites, Antibody ; Cathepsins/metabolism ; Cell Line ; Cricetinae ; Cricetulus ; Crystallography, X-Ray ; Democratic Republic of the Congo ; Ebolavirus/*chemistry/immunology ; Glycoproteins/*chemistry/*immunology/metabolism ; Glycosylation ; Humans ; Membrane Fusion ; Models, Molecular ; Protein Conformation ; Receptors, Virus/chemistry/metabolism ; *Survivors
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  • 129
    Publication Date: 2008-09-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Obama, Barack -- England -- Nature. 2008 Sep 25;455(7212):446-9. doi: 10.1038/455446a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18818624" target="_blank"〉PubMed〈/a〉
    Keywords: Embryonic Stem Cells ; Emigration and Immigration/legislation & jurisprudence ; *Federal Government ; Greenhouse Effect ; Humans ; Space Flight/trends ; Surveys and Questionnaires ; Technology/*trends ; United States
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  • 130
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2008-02-15
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hayden, Erika Check -- England -- Nature. 2008 Feb 14;451(7180):763-5. doi: 10.1038/451763a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18272992" target="_blank"〉PubMed〈/a〉
    Keywords: Access to Information/ethics ; Genome, Human/genetics ; Genomics/*history ; History, 20th Century ; History, 21st Century ; Human Genome Project/history ; Humans ; Molecular Biology/*history ; Sequence Analysis, DNA/*history ; United States
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  • 131
    Publication Date: 2008-07-18
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, Simon J Craddock -- England -- Nature. 2008 Jul 17;454(7202):274. doi: 10.1038/454274c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18633392" target="_blank"〉PubMed〈/a〉
    Keywords: Biomedical Research/economics/standards/*trends ; Clinical Trials as Topic/economics ; Humans ; National Institutes of Health (U.S.)/economics/trends ; United States
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  • 132
    Publication Date: 2008-06-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chandler, David -- England -- Nature. 2008 Jun 26;453(7199):1164-8. doi: 10.1038/4531164a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18580921" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Dinosaurs ; Earth (Planet) ; Environmental Monitoring/history ; History, 20th Century ; History, 21st Century ; *Minor Planets ; Moon ; United States ; United States National Aeronautics and Space Administration
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  • 133
    Publication Date: 2008-04-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Varmus, Harold -- England -- Nature. 2008 Apr 17;452(7189):811. doi: 10.1038/452811b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18421329" target="_blank"〉PubMed〈/a〉
    Keywords: Academies and Institutes/*economics ; Financing, Organized/*economics/*organization & administration ; Laboratories/economics ; National Institutes of Health (U.S.)/*economics ; Research Personnel/*economics ; United States
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  • 134
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    Unknown
    Nature Publishing Group (NPG)
    Publication Date: 2008-04-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vastag, Brian -- England -- Nature. 2008 Apr 3;452(7187):513. doi: 10.1038/452513a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18385696" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Brain/drug effects/embryology ; Conflict of Interest/legislation & jurisprudence ; Drug Approval ; Flame Retardants/*adverse effects/*toxicity ; Halogenated Diphenyl Ethers ; Hazardous Substances/adverse effects/toxicity ; Humans ; Maine ; Phenyl Ethers/*adverse effects/*toxicity ; Polybrominated Biphenyls/*adverse effects/*toxicity ; United States ; United States Environmental Protection Agency/ethics/*legislation & jurisprudence
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  • 135
    Publication Date: 2008-04-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Vermund, Sten H -- England -- Nature. 2008 Apr 17;452(7189):811. doi: 10.1038/452811d.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18421327" target="_blank"〉PubMed〈/a〉
    Keywords: Financing, Organized/*organization & administration/statistics & numerical data ; Iraq ; National Institutes of Health (U.S.)/*economics ; Research Personnel/*economics ; United States ; Warfare
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  • 136
    Publication Date: 2008-06-20
    Description: In the G-protein-coupled receptor (GPCR) rhodopsin, the inactivating ligand 11-cis-retinal is bound in the seven-transmembrane helix (TM) bundle and is cis/trans isomerized by light to form active metarhodopsin II. With metarhodopsin II decay, all-trans-retinal is released, and opsin is reloaded with new 11-cis-retinal. Here we present the crystal structure of ligand-free native opsin from bovine retinal rod cells at 2.9 angstrom (A) resolution. Compared to rhodopsin, opsin shows prominent structural changes in the conserved E(D)RY and NPxxY(x)(5,6)F regions and in TM5-TM7. At the cytoplasmic side, TM6 is tilted outwards by 6-7 A, whereas the helix structure of TM5 is more elongated and close to TM6. These structural changes, some of which were attributed to an active GPCR state, reorganize the empty retinal-binding pocket to disclose two openings that may serve the entry and exit of retinal. The opsin structure sheds new light on ligand binding to GPCRs and on GPCR activation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Park, Jung Hee -- Scheerer, Patrick -- Hofmann, Klaus Peter -- Choe, Hui-Woog -- Ernst, Oliver Peter -- England -- Nature. 2008 Jul 10;454(7201):183-7. doi: 10.1038/nature07063. Epub 2008 Jun 18.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Institut fur Medizinische Physik und Biophysik (CC2), Charite-Universitatsmedizin Berlin, Chariteplatz 1, D-10117 Berlin, Germany.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18563085" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Binding Sites ; Cattle ; Conserved Sequence ; Crystallography, X-Ray ; Ligands ; Models, Molecular ; Protein Conformation ; Protein Folding ; Receptors, G-Protein-Coupled/*chemistry/metabolism ; Retinal Rod Photoreceptor Cells/chemistry/cytology ; Retinaldehyde/chemistry/metabolism ; Rhodopsin/chemistry ; Rod Opsins/*chemistry/metabolism
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  • 137
    Publication Date: 2008-09-27
    Description: 〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2668937/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2668937/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Schwartz, Thue W -- Hubbell, Wayne L -- R01 EY005216/EY/NEI NIH HHS/ -- R01 EY005216-26/EY/NEI NIH HHS/ -- England -- Nature. 2008 Sep 25;455(7212):473-4. doi: 10.1038/455473a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18818642" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Binding Sites ; Cattle ; Crystallography, X-Ray ; GTP-Binding Protein alpha Subunits/*chemistry/*metabolism ; Models, Molecular ; Protein Conformation ; Rhodopsin/chemistry/metabolism ; Rod Opsins/*chemistry/*metabolism
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  • 138
    Publication Date: 2008-05-24
    Description: The RecA family of ATPases mediates homologous recombination, a reaction essential for maintaining genomic integrity and for generating genetic diversity. RecA, ATP and single-stranded DNA (ssDNA) form a helical filament that binds to double-stranded DNA (dsDNA), searches for homology, and then catalyses the exchange of the complementary strand, producing a new heteroduplex. Here we have solved the crystal structures of the Escherichia coli RecA-ssDNA and RecA-heteroduplex filaments. They show that ssDNA and ATP bind to RecA-RecA interfaces cooperatively, explaining the ATP dependency of DNA binding. The ATP gamma-phosphate is sensed across the RecA-RecA interface by two lysine residues that also stimulate ATP hydrolysis, providing a mechanism for DNA release. The DNA is underwound and stretched globally, but locally it adopts a B-DNA-like conformation that restricts the homology search to Watson-Crick-type base pairing. The complementary strand interacts primarily through base pairing, making heteroduplex formation strictly dependent on complementarity. The underwound, stretched filament conformation probably evolved to destabilize the donor duplex, freeing the complementary strand for homology sampling.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chen, Zhucheng -- Yang, Haijuan -- Pavletich, Nikola P -- Howard Hughes Medical Institute/ -- England -- Nature. 2008 May 22;453(7194):489-4. doi: 10.1038/nature06971.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Structural Biology Program, Memorial Sloan-Kettering Cancer Center, New York, New York 10021, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18497818" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphate/metabolism ; Binding Sites ; Crystallography, X-Ray ; DNA/*chemistry/genetics/*metabolism ; DNA, Single-Stranded/chemistry/genetics/metabolism ; Escherichia coli/*enzymology/genetics ; Models, Molecular ; Nucleic Acid Conformation ; Nucleic Acid Heteroduplexes/chemistry/genetics/metabolism ; Protein Conformation ; Rec A Recombinases/*chemistry/*metabolism ; *Recombination, Genetic/genetics ; *Sequence Homology, Nucleic Acid
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  • 139
    Publication Date: 2008-04-22
    Description: Metabolic phenotypes are the products of interactions among a variety of factors-dietary, other lifestyle/environmental, gut microbial and genetic. We use a large-scale exploratory analytical approach to investigate metabolic phenotype variation across and within four human populations, based on 1H NMR spectroscopy. Metabolites discriminating across populations are then linked to data for individuals on blood pressure, a major risk factor for coronary heart disease and stroke (leading causes of mortality worldwide). We analyse spectra from two 24-hour urine specimens for each of 4,630 participants from the INTERMAP epidemiological study, involving 17 population samples aged 40-59 in China, Japan, UK and USA. We show that urinary metabolite excretion patterns for East Asian and western population samples, with contrasting diets, diet-related major risk factors, and coronary heart disease/stroke rates, are significantly differentiated (P 〈 10(-16)), as are Chinese/Japanese metabolic phenotypes, and subgroups with differences in dietary vegetable/animal protein and blood pressure. Among discriminatory metabolites, we quantify four and show association (P 〈 0.05 to P 〈 0.0001) of mean 24-hour urinary formate excretion with blood pressure in multiple regression analyses for individuals. Mean 24-hour urinary excretion of alanine (direct) and hippurate (inverse), reflecting diet and gut microbial activities, are also associated with blood pressure of individuals. Metabolic phenotyping applied to high-quality epidemiological data offers the potential to develop an area of aetiopathogenetic knowledge involving discovery of novel biomarkers related to cardiovascular disease risk.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Holmes, Elaine -- Loo, Ruey Leng -- Stamler, Jeremiah -- Bictash, Magda -- Yap, Ivan K S -- Chan, Queenie -- Ebbels, Tim -- De Iorio, Maria -- Brown, Ian J -- Veselkov, Kirill A -- Daviglus, Martha L -- Kesteloot, Hugo -- Ueshima, Hirotsugu -- Zhao, Liancheng -- Nicholson, Jeremy K -- Elliott, Paul -- R01 HL084228/HL/NHLBI NIH HHS/ -- R01 HL50490/HL/NHLBI NIH HHS/ -- England -- Nature. 2008 May 15;453(7193):396-400. doi: 10.1038/nature06882. Epub 2008 Apr 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Biomolecular Medicine, Division of Surgery, Oncology, Reproductive Biology and Anaesthetics (SORA), Faculty of Medicine, Imperial College London, South Kensington Campus, London SW7 2AZ, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18425110" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Alanine/urine ; Animals ; Blood Pressure/*physiology ; Cardiovascular Diseases/metabolism ; China ; *Diet ; Dietary Proteins/pharmacology ; Female ; Great Britain ; Hippurates/urine ; Humans ; Intestines/microbiology ; Japan ; Magnetic Resonance Spectroscopy ; Male ; Metabolism/*physiology ; Middle Aged ; Phenotype ; Principal Component Analysis ; Time Factors ; United States ; Vegetables/chemistry
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  • 140
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Pearson, Helen -- England -- Nature. 2008 Oct 16;455(7215):845. doi: 10.1038/455845a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18938258" target="_blank"〉PubMed〈/a〉
    Keywords: *Epigenesis, Genetic ; Gene Expression Regulation ; Humans ; Molecular Biology/*economics/*trends ; National Institutes of Health (U.S.)/*economics ; United States
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  • 141
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    Nature Publishing Group (NPG)
    Publication Date: 2008-08-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2008 Jul 31;454(7204):556. doi: 10.1038/454556a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18670399" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line ; Consent Forms/ethics/*standards ; *Embryonic Stem Cells/cytology ; Ethics Committees ; Female ; Humans ; Informed Consent/*ethics/standards ; National Institutes of Health (U.S.) ; Tissue and Organ Procurement/ethics/standards ; United States
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  • 142
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    Nature Publishing Group (NPG)
    Publication Date: 2008-04-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Baker, Monya -- England -- Nature. 2008 Apr 10;452(7188):670. doi: 10.1038/452670a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18401364" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Adult Stem Cells ; Animals ; Clinical Trials as Topic/*legislation & jurisprudence/standards/trends ; Embryonic Stem Cells/*transplantation ; Fetal Stem Cells ; Humans ; Models, Animal ; Safety/*legislation & jurisprudence ; United States ; United States Food and Drug Administration/*legislation & jurisprudence
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  • 143
    Publication Date: 2008-12-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wadman, Meredith -- England -- Nature. 2008 Dec 11;456(7223):682-3. doi: 10.1038/456682b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19079015" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Humans ; National Institutes of Health (U.S.) ; Peer Review, Research/legislation & jurisprudence/standards ; Research Design/*legislation & jurisprudence/*standards ; United States
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  • 144
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-22
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wadman, Meredith -- England -- Nature. 2008 Oct 16;455(7215):842. doi: 10.1038/455842a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18938257" target="_blank"〉PubMed〈/a〉
    Keywords: Biotechnology/*economics/*trends ; Clinical Trials as Topic/economics/trends ; Genetics, Medical/economics/trends ; Humans ; Iceland ; Investments/economics/trends ; United States
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  • 145
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    Nature Publishing Group (NPG)
    Publication Date: 2008-09-05
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wadman, Meredith -- England -- Nature. 2008 Sep 4;455(7209):12. doi: 10.1038/455012a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18769402" target="_blank"〉PubMed〈/a〉
    Keywords: Embryo Research/*legislation & jurisprudence ; *Federal Government ; Greenhouse Effect ; Humans ; *Politics ; United States
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  • 146
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    Nature Publishing Group (NPG)
    Publication Date: 2008-10-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wadman, Meredith -- England -- Nature. 2008 Oct 2;455(7213):570-1. doi: 10.1038/455570a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18833235" target="_blank"〉PubMed〈/a〉
    Keywords: Budgets ; Conflict of Interest ; National Institutes of Health (U.S.)/economics/ethics/*organization & ; administration/trends ; United States
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  • 147
    Publication Date: 2008-02-22
    Description: Quantifying the number of deleterious mutations per diploid human genome is of crucial concern to both evolutionary and medical geneticists. Here we combine genome-wide polymorphism data from PCR-based exon resequencing, comparative genomic data across mammalian species, and protein structure predictions to estimate the number of functionally consequential single-nucleotide polymorphisms (SNPs) carried by each of 15 African American (AA) and 20 European American (EA) individuals. We find that AAs show significantly higher levels of nucleotide heterozygosity than do EAs for all categories of functional SNPs considered, including synonymous, non-synonymous, predicted 'benign', predicted 'possibly damaging' and predicted 'probably damaging' SNPs. This result is wholly consistent with previous work showing higher overall levels of nucleotide variation in African populations than in Europeans. EA individuals, in contrast, have significantly more genotypes homozygous for the derived allele at synonymous and non-synonymous SNPs and for the damaging allele at 'probably damaging' SNPs than AAs do. For SNPs segregating only in one population or the other, the proportion of non-synonymous SNPs is significantly higher in the EA sample (55.4%) than in the AA sample (47.0%; P 〈 2.3 x 10(-37)). We observe a similar proportional excess of SNPs that are inferred to be 'probably damaging' (15.9% in EA; 12.1% in AA; P 〈 3.3 x 10(-11)). Using extensive simulations, we show that this excess proportion of segregating damaging alleles in Europeans is probably a consequence of a bottleneck that Europeans experienced at about the time of the migration out of Africa.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2923434/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2923434/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lohmueller, Kirk E -- Indap, Amit R -- Schmidt, Steffen -- Boyko, Adam R -- Hernandez, Ryan D -- Hubisz, Melissa J -- Sninsky, John J -- White, Thomas J -- Sunyaev, Shamil R -- Nielsen, Rasmus -- Clark, Andrew G -- Bustamante, Carlos D -- P50 GM065509/GM/NIGMS NIH HHS/ -- P50 GM065509-070006/GM/NIGMS NIH HHS/ -- R01 HG003229/HG/NHGRI NIH HHS/ -- R01 HG003229-03/HG/NHGRI NIH HHS/ -- R01 HL072904/HL/NHLBI NIH HHS/ -- England -- Nature. 2008 Feb 21;451(7181):994-7. doi: 10.1038/nature06611.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biology and Genetics, Cornell University, Ithaca, New York 14853, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/18288194" target="_blank"〉PubMed〈/a〉
    Keywords: Africa/ethnology ; Alleles ; Computational Biology ; Emigration and Immigration ; Europe/ethnology ; Exons/genetics ; Genome, Human/*genetics ; Heterozygote ; Homozygote ; Humans ; Polymerase Chain Reaction ; Polymorphism, Single Nucleotide/*genetics ; United States
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  • 148
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    Nature Publishing Group (NPG)
    Publication Date: 2009-04-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Apr 23;458(7241):945. doi: 10.1038/458945a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19396091" target="_blank"〉PubMed〈/a〉
    Keywords: Computer Security/standards/statistics & numerical data/*trends ; European Union ; Federal Government ; Internet/*standards ; *Leadership ; Research/*trends ; United States
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  • 149
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    Nature Publishing Group (NPG)
    Publication Date: 2009-01-23
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dalton, Rex -- England -- Nature. 2009 Jan 22;457(7228):369. doi: 10.1038/457369a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19158758" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Breeding/economics/*methods ; Cattle/*genetics ; Dairying/economics/*methods ; Female ; Internationality ; Male ; Milk/*secretion/*standards ; Oligonucleotide Array Sequence Analysis ; Polymorphism, Single Nucleotide/genetics ; United States ; United States Department of Agriculture
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  • 150
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    Nature Publishing Group (NPG)
    Publication Date: 2009-04-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Apr 23;458(7241):945-6. doi: 10.1038/458945b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19396090" target="_blank"〉PubMed〈/a〉
    Keywords: Air Pollution/prevention & control ; Environmental Monitoring/*legislation & jurisprudence ; *Federal Government ; *Greenhouse Effect ; Humans ; Public Health/*legislation & jurisprudence ; United States ; United States Environmental Protection Agency/*legislation & jurisprudence
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  • 151
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    Nature Publishing Group (NPG)
    Publication Date: 2009-01-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dalton, Rex -- England -- Nature. 2009 Jan 15;457(7227):241. doi: 10.1038/457241a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19148062" target="_blank"〉PubMed〈/a〉
    Keywords: Conservation of Energy Resources/*trends ; History, 20th Century ; History, 21st Century ; United States ; United States Government Agencies/*organization & administration
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  • 152
    Publication Date: 2009-07-10
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Summers, Frank -- England -- Nature. 2009 Jul 9;460(7252):173. doi: 10.1038/460173a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19587745" target="_blank"〉PubMed〈/a〉
    Keywords: Prisoners/*psychology ; Psychology/*statistics & numerical data ; Societies, Scientific ; Torture/*statistics & numerical data ; United States
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  • 153
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    Nature Publishing Group (NPG)
    Publication Date: 2009-04-01
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dalton, Rex -- Witze, Alexandra -- England -- Nature. 2009 Mar 26;458(7237):396. doi: 10.1038/458396a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19334300" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Ecosystem ; *Greenhouse Effect ; History, 20th Century ; History, 21st Century ; Leadership ; Marine Biology ; United States ; United States Government Agencies/*organization & administration
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  • 154
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    Nature Publishing Group (NPG)
    Publication Date: 2009-04-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Apr 9;458(7239):693. doi: 10.1038/458693b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19360057" target="_blank"〉PubMed〈/a〉
    Keywords: Acquired Immunodeficiency Syndrome/*economics/mortality/*therapy ; Africa ; Costs and Cost Analysis ; Government Programs/*economics ; United States
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  • 155
    Publication Date: 2009-11-26
    Description: Mutations in the enzyme cytosolic isocitrate dehydrogenase 1 (IDH1) are a common feature of a major subset of primary human brain cancers. These mutations occur at a single amino acid residue of the IDH1 active site, resulting in loss of the enzyme's ability to catalyse conversion of isocitrate to alpha-ketoglutarate. However, only a single copy of the gene is mutated in tumours, raising the possibility that the mutations do not result in a simple loss of function. Here we show that cancer-associated IDH1 mutations result in a new ability of the enzyme to catalyse the NADPH-dependent reduction of alpha-ketoglutarate to R(-)-2-hydroxyglutarate (2HG). Structural studies demonstrate that when arginine 132 is mutated to histidine, residues in the active site are shifted to produce structural changes consistent with reduced oxidative decarboxylation of isocitrate and acquisition of the ability to convert alpha-ketoglutarate to 2HG. Excess accumulation of 2HG has been shown to lead to an elevated risk of malignant brain tumours in patients with inborn errors of 2HG metabolism. Similarly, in human malignant gliomas harbouring IDH1 mutations, we find markedly elevated levels of 2HG. These data demonstrate that the IDH1 mutations result in production of the onco-metabolite 2HG, and indicate that the excess 2HG which accumulates in vivo contributes to the formation and malignant progression of gliomas.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2818760/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2818760/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dang, Lenny -- White, David W -- Gross, Stefan -- Bennett, Bryson D -- Bittinger, Mark A -- Driggers, Edward M -- Fantin, Valeria R -- Jang, Hyun Gyung -- Jin, Shengfang -- Keenan, Marie C -- Marks, Kevin M -- Prins, Robert M -- Ward, Patrick S -- Yen, Katharine E -- Liau, Linda M -- Rabinowitz, Joshua D -- Cantley, Lewis C -- Thompson, Craig B -- Vander Heiden, Matthew G -- Su, Shinsan M -- P01 CA104838/CA/NCI NIH HHS/ -- P01 CA104838-05/CA/NCI NIH HHS/ -- P30 EB009998/EB/NIBIB NIH HHS/ -- R01 CA105463/CA/NCI NIH HHS/ -- R01 CA105463-06/CA/NCI NIH HHS/ -- R21 CA128620/CA/NCI NIH HHS/ -- England -- Nature. 2009 Dec 10;462(7274):739-44. doi: 10.1038/nature08617. Epub .〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Agios Pharmaceuticals, Cambridge, Massachusetts 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19935646" target="_blank"〉PubMed〈/a〉
    Keywords: Arginine/genetics ; Brain Neoplasms/*genetics/*metabolism/pathology ; Catalytic Domain ; Cell Line ; Crystallography, X-Ray ; Disease Progression ; Enzyme Assays ; Glioma/genetics/metabolism/pathology ; Glutarates/*metabolism ; Histidine/genetics/metabolism ; Humans ; Isocitrate Dehydrogenase/*genetics/*metabolism ; Ketoglutaric Acids/metabolism ; Models, Molecular ; Mutant Proteins/*genetics/*metabolism ; Mutation/genetics ; Protein Conformation
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  • 156
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    Publication Date: 2009-04-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Apr 9;458(7239):679-80. doi: 10.1038/458679b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19360032" target="_blank"〉PubMed〈/a〉
    Keywords: *Greenhouse Effect ; National Academy of Sciences (U.S.) ; *Policy Making ; United States
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  • 157
    Publication Date: 2009-11-03
    Description: Although drugs are intended to be selective, at least some bind to several physiological targets, explaining side effects and efficacy. Because many drug-target combinations exist, it would be useful to explore possible interactions computationally. Here we compared 3,665 US Food and Drug Administration (FDA)-approved and investigational drugs against hundreds of targets, defining each target by its ligands. Chemical similarities between drugs and ligand sets predicted thousands of unanticipated associations. Thirty were tested experimentally, including the antagonism of the beta(1) receptor by the transporter inhibitor Prozac, the inhibition of the 5-hydroxytryptamine (5-HT) transporter by the ion channel drug Vadilex, and antagonism of the histamine H(4) receptor by the enzyme inhibitor Rescriptor. Overall, 23 new drug-target associations were confirmed, five of which were potent (〈100 nM). The physiological relevance of one, the drug N,N-dimethyltryptamine (DMT) on serotonergic receptors, was confirmed in a knockout mouse. The chemical similarity approach is systematic and comprehensive, and may suggest side-effects and new indications for many drugs.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784146/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2784146/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Keiser, Michael J -- Setola, Vincent -- Irwin, John J -- Laggner, Christian -- Abbas, Atheir I -- Hufeisen, Sandra J -- Jensen, Niels H -- Kuijer, Michael B -- Matos, Roberto C -- Tran, Thuy B -- Whaley, Ryan -- Glennon, Richard A -- Hert, Jerome -- Thomas, Kelan L H -- Edwards, Douglas D -- Shoichet, Brian K -- Roth, Bryan L -- R01 DA017204/DA/NIDA NIH HHS/ -- R01 DA017204-04/DA/NIDA NIH HHS/ -- R01 DA017204-05/DA/NIDA NIH HHS/ -- R01 MH061887/MH/NIMH NIH HHS/ -- R01 MH061887-09/MH/NIMH NIH HHS/ -- R01 MH061887-10/MH/NIMH NIH HHS/ -- U19 MH082441/MH/NIMH NIH HHS/ -- U19 MH082441-01/MH/NIMH NIH HHS/ -- U19 MH082441-010001/MH/NIMH NIH HHS/ -- U19 MH082441-019002/MH/NIMH NIH HHS/ -- U19 MH082441-019003/MH/NIMH NIH HHS/ -- U19 MH082441-02/MH/NIMH NIH HHS/ -- U19 MH082441-020001/MH/NIMH NIH HHS/ -- U19 MH082441-029002/MH/NIMH NIH HHS/ -- U19 MH082441-03/MH/NIMH NIH HHS/ -- U19 MH082441-030001/MH/NIMH NIH HHS/ -- U19 MH082441-039002/MH/NIMH NIH HHS/ -- England -- Nature. 2009 Nov 12;462(7270):175-81. doi: 10.1038/nature08506. Epub 2009 Nov 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmaceutical Chemistry, University of California San Francisco, 1700 4th Street, San Francisco, California 94143-2550, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19881490" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Computational Biology ; Databases, Factual ; Drug Evaluation, Preclinical/*methods ; Drug-Related Side Effects and Adverse Reactions ; Humans ; Ligands ; Mice ; Mice, Knockout ; Off-Label Use ; Pharmaceutical Preparations/*metabolism ; Receptors, Serotonin/metabolism ; *Substrate Specificity ; United States ; United States Food and Drug Administration
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  • 158
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    Publication Date: 2009-03-04
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brumfiel, Geoff -- England -- Nature. 2009 Feb 26;457(7233):1067. doi: 10.1038/4571067b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19256081" target="_blank"〉PubMed〈/a〉
    Keywords: Antarctic Regions ; Carbon Dioxide/*analysis ; *Ecosystem ; Environmental Monitoring/*instrumentation ; Japan ; *Spacecraft ; United States ; United States National Aeronautics and Space Administration
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  • 159
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    Publication Date: 2009-03-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Mar 26;458(7237):385. doi: 10.1038/458385a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19325580" target="_blank"〉PubMed〈/a〉
    Keywords: Embryo Research/*ethics/*legislation & jurisprudence ; *Embryonic Stem Cells ; Federal Government ; Great Britain ; Humans ; *Public Opinion ; *Research Personnel ; United States
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  • 160
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    Publication Date: 2009-03-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Mar 26;458(7237):385. doi: 10.1038/458386a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19325578" target="_blank"〉PubMed〈/a〉
    Keywords: Europe ; *Genes ; *Genetic Testing/economics/legislation & jurisprudence ; History, 20th Century ; History, 21st Century ; Humans ; Patents as Topic/history/*legislation & jurisprudence/*statistics & numerical ; data ; United States
    Print ISSN: 0028-0836
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  • 161
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    Publication Date: 2009-03-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Mar 19;458(7236):259-60. doi: 10.1038/458259b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19295554" target="_blank"〉PubMed〈/a〉
    Keywords: Confidentiality/ethics/legislation & jurisprudence/standards/trends ; Federal Government ; Humans ; Medical Informatics/*economics/ethics/standards/*trends ; *Medical Records/economics ; United States
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  • 162
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    Publication Date: 2009-03-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Mar 12;458(7235):126. doi: 10.1038/458126a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19279579" target="_blank"〉PubMed〈/a〉
    Keywords: China ; *Conservation of Natural Resources ; *Environment ; Policy Making ; United States
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  • 163
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    Publication Date: 2009-03-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Mar 12;458(7235):125-6. doi: 10.1038/458125b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19279577" target="_blank"〉PubMed〈/a〉
    Keywords: Electric Power Supplies/*economics/*standards/supply & distribution ; *Electricity ; Policy Making ; United States
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  • 164
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    Publication Date: 2009-03-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Mar 5;458(7234):8. doi: 10.1038/458008b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19262621" target="_blank"〉PubMed〈/a〉
    Keywords: *Federal Government ; Nevada ; *Politics ; *Radioactive Waste ; Refuse Disposal/*methods/standards ; United States
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  • 165
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    Publication Date: 2009-10-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Buchen, Lizzie -- England -- Nature. 2009 Oct 1;461(7264):580. doi: 10.1038/461580a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19794466" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture/*organization & administration/*trends ; Animals ; Research/*trends ; United States ; United States Department of Agriculture/*organization & administration
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  • 166
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    Publication Date: 2009-03-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Mar 5;458(7234):7. doi: 10.1038/458007a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19262620" target="_blank"〉PubMed〈/a〉
    Keywords: Cost-Benefit Analysis ; Delivery of Health Care/*economics/standards/*statistics & numerical data ; Evidence-Based Medicine/*trends ; National Institutes of Health (U.S.)/economics ; United States ; United States Dept. of Health and Human Services/*economics
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  • 167
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    Publication Date: 2009-01-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kim, Scott -- Ubel, Peter -- De Vries, Raymond -- England -- Nature. 2009 Jan 29;457(7229):534-5. doi: 10.1038/457534a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Michigan, 300 North Ingalls Street, Ann Arbor, MI 48109, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19177111" target="_blank"〉PubMed〈/a〉
    Keywords: Clinical Trials as Topic/economics/ethics/*legislation & jurisprudence/standards ; Cost-Benefit Analysis ; Humans ; Informed Consent/ethics ; Patient Rights/*legislation & jurisprudence/*standards ; Risk Assessment ; United States
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  • 168
    Publication Date: 2009-05-22
    Description: G-protein-coupled receptors (GPCRs) mediate most of our physiological responses to hormones, neurotransmitters and environmental stimulants, and so have great potential as therapeutic targets for a broad spectrum of diseases. They are also fascinating molecules from the perspective of membrane-protein structure and biology. Great progress has been made over the past three decades in understanding diverse GPCRs, from pharmacology to functional characterization in vivo. Recent high-resolution structural studies have provided insights into the molecular mechanisms of GPCR activation and constitutive activity.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967846/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3967846/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rosenbaum, Daniel M -- Rasmussen, Soren G F -- Kobilka, Brian K -- F32 GM082028/GM/NIGMS NIH HHS/ -- R01 GM083118/GM/NIGMS NIH HHS/ -- R01-GM083118/GM/NIGMS NIH HHS/ -- R01-NS28471/NS/NINDS NIH HHS/ -- England -- Nature. 2009 May 21;459(7245):356-63. doi: 10.1038/nature08144.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular and Cellular Physiology, Stanford University School of Medicine, 279 Campus Drive, Palo Alto, California 94305, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19458711" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Conserved Sequence ; Cytoplasm/metabolism ; Humans ; Opsins/chemistry/metabolism ; Protein Conformation ; Receptors, G-Protein-Coupled/*chemistry/*metabolism ; Signal Transduction
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  • 169
    Publication Date: 2009-02-27
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Demain, Arnold L -- England -- Nature. 2009 Feb 26;457(7233):1079. doi: 10.1038/4571079c.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19242451" target="_blank"〉PubMed〈/a〉
    Keywords: Biotechnology/*history ; Congresses as Topic/history ; Cuba ; History, 20th Century ; *International Cooperation ; Politics ; Research Personnel/*history ; United States
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  • 170
    Publication Date: 2009-07-03
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Thomas Scott, Christopher -- Owen-Smith, Jason -- McCormick, Jennifer -- England -- Nature. 2009 Jul 2;460(7251):33. doi: 10.1038/460033b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19571864" target="_blank"〉PubMed〈/a〉
    Keywords: Cell Line ; *Federal Government ; *Guidelines as Topic ; Humans ; *National Institutes of Health (U.S.) ; *Stem Cells ; United States
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  • 171
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    Publication Date: 2009-02-06
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Feb 5;457(7230):635. doi: 10.1038/457635a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19194396" target="_blank"〉PubMed〈/a〉
    Keywords: Education, Graduate/trends ; Research Personnel/economics/education/*supply & distribution ; Science/economics/education/*manpower ; United States ; Universities/manpower ; Vocational Guidance/trends
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  • 172
    Publication Date: 2009-10-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kloor, Harry -- England -- Nature. 2009 Oct 15;461(7266):885. doi: 10.1038/461885a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19829358" target="_blank"〉PubMed〈/a〉
    Keywords: Astronauts/trends ; Awards and Prizes ; Humans ; *Motion Pictures as Topic ; *Science/economics/education ; Space Flight/economics/trends ; Spacecraft ; United States ; United States National Aeronautics and Space Administration
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  • 173
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    Publication Date: 2009-01-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Jan 29;457(7229):511. doi: 10.1038/457511a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19177074" target="_blank"〉PubMed〈/a〉
    Keywords: *Acquired Immunodeficiency Syndrome/epidemiology/prevention & control ; *Federal Government ; Humans ; International Cooperation ; Iran/epidemiology ; Physicians/*legislation & jurisprudence ; United States
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  • 174
    Publication Date: 2009-03-20
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Derby, Brian -- England -- Nature. 2009 Mar 19;458(7236):281. doi: 10.1038/458281a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19295587" target="_blank"〉PubMed〈/a〉
    Keywords: Competitive Behavior ; Great Britain ; National Institutes of Health (U.S.)/economics ; Research Personnel/economics ; Research Support as Topic/*organization & administration ; United States
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    Publication Date: 2009-01-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Jan 29;457(7229):511-2. doi: 10.1038/457511b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19177073" target="_blank"〉PubMed〈/a〉
    Keywords: *Federal Government ; *Politics ; Research Personnel/*standards ; Science/*trends ; United States
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  • 176
    Publication Date: 2009-10-30
    Description: Enzymes use substrate-binding energy both to promote ground-state association and to stabilize the reaction transition state selectively. The monomeric homing endonuclease I-AniI cleaves with high sequence specificity in the centre of a 20-base-pair (bp) DNA target site, with the amino (N)-terminal domain of the enzyme making extensive binding interactions with the left (-) side of the target site and the similarly structured carboxy (C)-terminal domain interacting with the right (+) side. Here we show that, despite the approximate twofold symmetry of the enzyme-DNA complex, there is almost complete segregation of interactions responsible for substrate binding to the (-) side of the interface and interactions responsible for transition-state stabilization to the (+) side. Although single base-pair substitutions throughout the entire DNA target site reduce catalytic efficiency, mutations in the (-) DNA half-site almost exclusively increase the dissociation constant (K(D)) and the Michaelis constant under single-turnover conditions (K(M)*), and those in the (+) half-site primarily decrease the turnover number (k(cat)*). The reduction of activity produced by mutations on the (-) side, but not mutations on the (+) side, can be suppressed by tethering the substrate to the endonuclease displayed on the surface of yeast. This dramatic asymmetry in the use of enzyme-substrate binding energy for catalysis has direct relevance to the redesign of endonucleases to cleave genomic target sites for gene therapy and other applications. Computationally redesigned enzymes that achieve new specificities on the (-) side do so by modulating K(M)*, whereas redesigns with altered specificities on the (+) side modulate k(cat)*. Our results illustrate how classical enzymology and modern protein design can each inform the other.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771326/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2771326/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Thyme, Summer B -- Jarjour, Jordan -- Takeuchi, Ryo -- Havranek, James J -- Ashworth, Justin -- Scharenberg, Andrew M -- Stoddard, Barry L -- Baker, David -- GM084433/GM/NIGMS NIH HHS/ -- R00 RR024107/RR/NCRR NIH HHS/ -- R00 RR024107-03/RR/NCRR NIH HHS/ -- R00 RR024107-04/RR/NCRR NIH HHS/ -- RL1 GM084433/GM/NIGMS NIH HHS/ -- RL1 GM084433-03/GM/NIGMS NIH HHS/ -- RL1CA133832/CA/NCI NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2009 Oct 29;461(7268):1300-4. doi: 10.1038/nature08508.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry, University of Washington, Seattle, Washington 98195, USA. sthyme@u.washington.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19865174" target="_blank"〉PubMed〈/a〉
    Keywords: Binding Sites ; *Biocatalysis ; Computational Biology ; *Computer Simulation ; DNA/chemistry/metabolism ; Endonucleases/chemistry/*metabolism ; Kinetics ; Models, Molecular ; Protein Binding ; Protein Conformation ; RNA-Directed DNA Polymerase/chemistry/*metabolism ; Saccharomyces cerevisiae/metabolism ; Substrate Specificity ; *Thermodynamics
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  • 177
    Publication Date: 2009-12-17
    Description: Mistranslation arising from confusion of serine for alanine by alanyl-tRNA synthetases (AlaRSs) has profound functional consequences. Throughout evolution, two editing checkpoints prevent disease-causing mistranslation from confusing glycine or serine for alanine at the active site of AlaRS. In both bacteria and mice, Ser poses a bigger challenge than Gly. One checkpoint is the AlaRS editing centre, and the other is from widely distributed AlaXps-free-standing, genome-encoded editing proteins that clear Ser-tRNA(Ala). The paradox of misincorporating both a smaller (glycine) and a larger (serine) amino acid suggests a deep conflict for nature-designed AlaRS. Here we show the chemical basis for this conflict. Nine crystal structures, together with kinetic and mutational analysis, provided snapshots of adenylate formation for each amino acid. An inherent dilemma is posed by constraints of a structural design that pins down the alpha-amino group of the bound amino acid by using an acidic residue. This design, dating back more than 3 billion years, creates a serendipitous interaction with the serine OH that is difficult to avoid. Apparently because no better architecture for the recognition of alanine could be found, the serine misactivation problem was solved through free-standing AlaXps, which appeared contemporaneously with early AlaRSs. The results reveal unconventional problems and solutions arising from the historical design of the protein synthesis machinery.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2799227/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2799227/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Guo, Min -- Chong, Yeeting E -- Shapiro, Ryan -- Beebe, Kirk -- Yang, Xiang-Lei -- Schimmel, Paul -- GM 15539/GM/NIGMS NIH HHS/ -- R01 GM015539/GM/NIGMS NIH HHS/ -- R01 GM015539-43/GM/NIGMS NIH HHS/ -- England -- Nature. 2009 Dec 10;462(7274):808-12. doi: 10.1038/nature08612.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉The Skaggs Institute for Chemical Biology and Department of Molecular Biology, The Scripps Research Institute, BCC-379, 10550 North Torrey Pines Road, La Jolla, California 92037, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20010690" target="_blank"〉PubMed〈/a〉
    Keywords: Alanine/*metabolism ; Alanine-tRNA Ligase/chemistry/genetics/*metabolism ; Aspartic Acid/genetics/metabolism ; Catalytic Domain ; Crystallization ; Escherichia coli/*enzymology ; Kinetics ; Models, Molecular ; Mutation ; *Protein Biosynthesis ; Protein Conformation ; RNA, Transfer, Ala/metabolism ; Serine/*metabolism ; Structure-Activity Relationship
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  • 178
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    Nature Publishing Group (NPG)
    Publication Date: 2009-09-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Monastersky, Richard -- England -- Nature. 2009 Jul 16;460(7253):314-5. doi: 10.1038/460314a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19606113" target="_blank"〉PubMed〈/a〉
    Keywords: Astronauts/economics/*history/*trends ; Europe ; History, 20th Century ; History, 21st Century ; *Moon ; Research Personnel/psychology ; Space Flight/economics/*history/*trends ; United States ; United States National Aeronautics and Space ; Administration/economics/*history/*trends
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  • 179
    Publication Date: 2009-04-28
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Gurney, Kevin Robert -- England -- Nature. 2009 Apr 23;458(7241):977-9. doi: 10.1038/458977a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19396132" target="_blank"〉PubMed〈/a〉
    Keywords: Atmosphere/chemistry ; Carbon/analysis/*metabolism ; Carbon Dioxide/analysis/chemistry/metabolism ; China ; *Ecosystem ; *Fossil Fuels ; History, 20th Century ; History, 21st Century ; Soil/analysis ; Trees/metabolism ; United States
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  • 180
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    Nature Publishing Group (NPG)
    Publication Date: 2009-01-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Jan 15;457(7227):258-61. doi: 10.1038/457258a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19148081" target="_blank"〉PubMed〈/a〉
    Keywords: Bioterrorism/*prevention & control ; Embryo Research/legislation & jurisprudence ; Environmental Pollution/*prevention & control ; *Federal Government ; Greenhouse Effect ; Humans ; *International Cooperation ; Leadership ; National Institutes of Health (U.S.)/legislation & jurisprudence/*organization & ; administration ; Public Policy ; Security Measures/economics/organization & administration ; United States ; United States Environmental Protection Agency/*organization & administration ; United States Food and Drug Administration/*organization & ; administration/standards
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  • 181
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    Nature Publishing Group (NPG)
    Publication Date: 2009-07-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Butler, Declan -- England -- Nature. 2009 Jul 23;460(7254):446. doi: 10.1038/460446a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19626079" target="_blank"〉PubMed〈/a〉
    Keywords: Adjuvants, Immunologic ; Antigens, Viral/immunology ; Disease Outbreaks/*prevention & control ; Europe ; Humans ; Influenza A Virus, H1N1 Subtype/*immunology ; Influenza Vaccines/economics/*immunology/standards/supply & distribution ; Influenza, Human/*prevention & control ; United States ; World Health Organization
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  • 182
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    Nature Publishing Group (NPG)
    Publication Date: 2009-01-17
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Jan 15;457(7227):235. doi: 10.1038/457235a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19148048" target="_blank"〉PubMed〈/a〉
    Keywords: Conservation of Energy Resources/economics/*trends ; *Federal Government ; Greenhouse Effect ; *Research Personnel ; Science/economics/*trends ; United States
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  • 183
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    Nature Publishing Group (NPG)
    Publication Date: 2009-01-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Jan 8;457(7226):129. doi: 10.1038/457129a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19129801" target="_blank"〉PubMed〈/a〉
    Keywords: Europe ; Information Storage and Retrieval/*economics/methods/*trends ; *Private Sector ; *Public Sector ; United States
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  • 184
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    Nature Publishing Group (NPG)
    Publication Date: 2009-01-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉England -- Nature. 2009 Jan 8;457(7226):129-30. doi: 10.1038/457129b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19129800" target="_blank"〉PubMed〈/a〉
    Keywords: *Conflict (Psychology) ; *Cultural Diversity ; History, 20th Century ; History, 21st Century ; Social Sciences/*history ; United States ; Violence ; Warfare
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  • 185
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    Nature Publishing Group (NPG)
    Publication Date: 2009-05-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Butler, Declan -- England -- Nature. 2009 Apr 30;458(7242):1082-3. doi: 10.1038/4581082a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19407756" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Birds/virology ; Centers for Disease Control and Prevention (U.S.) ; Disease Outbreaks/*statistics & numerical data ; Humans ; Influenza A Virus, H1N1 Subtype/genetics/*isolation & purification/pathogenicity ; Influenza A Virus, H5N1 Subtype/pathogenicity ; Influenza, Human/*epidemiology/mortality/transmission/virology ; *Internationality ; Mexico/epidemiology ; Swine/*virology ; United States ; World Health Organization
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  • 186
    Publication Date: 2009-10-02
    Description: A key step in many chromatin-related processes is the recognition of histone post-translational modifications by effector modules such as bromodomains and chromo-like domains of the Royal family. Whereas effector-mediated recognition of single post-translational modifications is well characterized, how the cell achieves combinatorial readout of histones bearing multiple modifications is poorly understood. One mechanism involves multivalent binding by linked effector modules. For example, the tandem bromodomains of human TATA-binding protein-associated factor-1 (TAF1) bind better to a diacetylated histone H4 tail than to monoacetylated tails, a cooperative effect attributed to each bromodomain engaging one acetyl-lysine mark. Here we report a distinct mechanism of combinatorial readout for the mouse TAF1 homologue Brdt, a testis-specific member of the BET protein family. Brdt associates with hyperacetylated histone H4 (ref. 7) and is implicated in the marked chromatin remodelling that follows histone hyperacetylation during spermiogenesis, the stage of spermatogenesis in which post-meiotic germ cells mature into fully differentiated sperm. Notably, we find that a single bromodomain (BD1) of Brdt is responsible for selectively recognizing histone H4 tails bearing two or more acetylation marks. The crystal structure of BD1 bound to a diacetylated H4 tail shows how two acetyl-lysine residues cooperate to interact with one binding pocket. Structure-based mutagenesis that reduces the selectivity of BD1 towards diacetylated tails destabilizes the association of Brdt with acetylated chromatin in vivo. Structural analysis suggests that other chromatin-associated proteins may be capable of a similar mode of ligand recognition, including yeast Bdf1, human TAF1 and human CBP/p300 (also known as CREBBP and EP300, respectively). Our findings describe a new mechanism for the combinatorial readout of histone modifications in which a single effector module engages two marks on a histone tail as a composite binding epitope.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Moriniere, Jeanne -- Rousseaux, Sophie -- Steuerwald, Ulrich -- Soler-Lopez, Montserrat -- Curtet, Sandrine -- Vitte, Anne-Laure -- Govin, Jerome -- Gaucher, Jonathan -- Sadoul, Karin -- Hart, Darren J -- Krijgsveld, Jeroen -- Khochbin, Saadi -- Muller, Christoph W -- Petosa, Carlo -- England -- Nature. 2009 Oct 1;461(7264):664-8. doi: 10.1038/nature08397.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉European Molecular Biology Laboratory, Grenoble Outstation, 6 rue Jules Horowitz, BP 181, 38042 Grenoble Cedex 9, France.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19794495" target="_blank"〉PubMed〈/a〉
    Keywords: Acetylation ; Allosteric Regulation ; Animals ; Binding Sites ; COS Cells ; Cercopithecus aethiops ; Chromatin/chemistry/metabolism ; Crystallography, X-Ray ; Histones/*chemistry/*metabolism ; Lysine/metabolism ; Mice ; Models, Molecular ; Nuclear Proteins/*chemistry/genetics/*metabolism ; Protein Binding ; Protein Conformation ; Protein Structure, Tertiary ; Substrate Specificity
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  • 187
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    Nature Publishing Group (NPG)
    Publication Date: 2009-04-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Butler, Declan -- England -- Nature. 2009 Apr 9;458(7239):684-5. doi: 10.1038/458684a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19360046" target="_blank"〉PubMed〈/a〉
    Keywords: International Cooperation ; *Nuclear Weapons ; Public Policy ; Security Measures/trends ; United States
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  • 188
    Publication Date: 2009-11-13
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Samarasekera, Indira V -- England -- Nature. 2009 Nov 12;462(7270):160-1. doi: 10.1038/462160a.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉University of Alberta in Edmonton, Alberta, Canada. indira.samarasekera@ualberta.ca〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19907477" target="_blank"〉PubMed〈/a〉
    Keywords: American Recovery and Reinvestment Act ; Economic Recession ; Internationality ; Public-Private Sector Partnerships ; Research/*economics/*organization & administration/trends ; United States ; Universities/*economics/*organization & administration/trends
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  • 189
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    Nature Publishing Group (NPG)
    Publication Date: 2009-08-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dolgin, Elie -- England -- Nature. 2009 Aug 27;460(7259):1069. doi: 10.1038/4601069a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19713906" target="_blank"〉PubMed〈/a〉
    Keywords: Antibodies, Monoclonal/administration & dosage ; Antibodies, Monoclonal, Humanized ; Cetuximab ; Colorectal Neoplasms/diagnosis/drug therapy/genetics ; Drug Labeling/*legislation & jurisprudence ; Genes, ras/genetics ; Genetic Markers/genetics ; Genetic Testing ; Humans ; Pharmacogenetics ; Randomized Controlled Trials as Topic ; United States ; United States Food and Drug Administration/*legislation & jurisprudence
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  • 190
    Publication Date: 2009-07-22
    Description: Acquired uniparental disomy (aUPD) is a common feature of cancer genomes, leading to loss of heterozygosity. aUPD is associated not only with loss-of-function mutations of tumour suppressor genes, but also with gain-of-function mutations of proto-oncogenes. Here we show unique gain-of-function mutations of the C-CBL (also known as CBL) tumour suppressor that are tightly associated with aUPD of the 11q arm in myeloid neoplasms showing myeloproliferative features. The C-CBL proto-oncogene, a cellular homologue of v-Cbl, encodes an E3 ubiquitin ligase and negatively regulates signal transduction of tyrosine kinases. Homozygous C-CBL mutations were found in most 11q-aUPD-positive myeloid malignancies. Although the C-CBL mutations were oncogenic in NIH3T3 cells, c-Cbl was shown to functionally and genetically act as a tumour suppressor. C-CBL mutants did not have E3 ubiquitin ligase activity, but inhibited that of wild-type C-CBL and CBL-B (also known as CBLB), leading to prolonged activation of tyrosine kinases after cytokine stimulation. c-Cbl(-/-) haematopoietic stem/progenitor cells (HSPCs) showed enhanced sensitivity to a variety of cytokines compared to c-Cbl(+/+) HSPCs, and transduction of C-CBL mutants into c-Cbl(-/-) HSPCs further augmented their sensitivities to a broader spectrum of cytokines, including stem-cell factor (SCF, also known as KITLG), thrombopoietin (TPO, also known as THPO), IL3 and FLT3 ligand (FLT3LG), indicating the presence of a gain-of-function that could not be attributed to a simple loss-of-function. The gain-of-function effects of C-CBL mutants on cytokine sensitivity of HSPCs largely disappeared in a c-Cbl(+/+) background or by co-transduction of wild-type C-CBL, which suggests the pathogenic importance of loss of wild-type C-CBL alleles found in most cases of C-CBL-mutated myeloid neoplasms. Our findings provide a new insight into a role of gain-of-function mutations of a tumour suppressor associated with aUPD in the pathogenesis of some myeloid cancer subsets.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sanada, Masashi -- Suzuki, Takahiro -- Shih, Lee-Yung -- Otsu, Makoto -- Kato, Motohiro -- Yamazaki, Satoshi -- Tamura, Azusa -- Honda, Hiroaki -- Sakata-Yanagimoto, Mamiko -- Kumano, Keiki -- Oda, Hideaki -- Yamagata, Tetsuya -- Takita, Junko -- Gotoh, Noriko -- Nakazaki, Kumi -- Kawamata, Norihiko -- Onodera, Masafumi -- Nobuyoshi, Masaharu -- Hayashi, Yasuhide -- Harada, Hiroshi -- Kurokawa, Mineo -- Chiba, Shigeru -- Mori, Hiraku -- Ozawa, Keiya -- Omine, Mitsuhiro -- Hirai, Hisamaru -- Nakauchi, Hiromitsu -- Koeffler, H Phillip -- Ogawa, Seishi -- 2R01CA026038-30/CA/NCI NIH HHS/ -- England -- Nature. 2009 Aug 13;460(7257):904-8. doi: 10.1038/nature08240. Epub 2009 Jul 20.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cancer Genomics Project, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8655, Japan.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19620960" target="_blank"〉PubMed〈/a〉
    Keywords: Allelic Imbalance ; Amino Acid Sequence ; Animals ; Base Sequence ; Chromosomes, Human, Pair 11/genetics ; Female ; *Genes, Tumor Suppressor ; Humans ; Leukemia, Myeloid/*genetics/metabolism/pathology ; Male ; Mice ; Mice, Knockout ; Mice, Nude ; Models, Molecular ; Molecular Sequence Data ; Mutant Proteins/chemistry/genetics/*metabolism ; Mutation ; NIH 3T3 Cells ; Neoplasm Transplantation ; Oncogenes/genetics ; Phosphorylation ; Protein Conformation ; Proto-Oncogene Proteins c-cbl/antagonists & ; inhibitors/chemistry/deficiency/*genetics/*metabolism ; Ubiquitination ; Uniparental Disomy/genetics ; ras Proteins/genetics/metabolism
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  • 191
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    Nature Publishing Group (NPG)
    Publication Date: 2009-08-21
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dolgin, Elie -- England -- Nature. 2009 Aug 20;460(7258):939. doi: 10.1038/460939a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19693051" target="_blank"〉PubMed〈/a〉
    Keywords: Biomedical Research/trends ; Budgets ; Clinical Medicine/trends ; Developing Countries ; Genetic Predisposition to Disease ; Health Care Costs ; Humans ; National Institutes of Health (U.S.)/economics/*organization & ; administration/*trends ; Rare Diseases ; Religion and Science ; United States
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  • 192
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    Nature Publishing Group (NPG)
    Publication Date: 2009-01-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Butler, Declan -- England -- Nature. 2009 Jan 29;457(7229):517. doi: 10.1038/457517b.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19177088" target="_blank"〉PubMed〈/a〉
    Keywords: *Acquired Immunodeficiency Syndrome ; *Human Rights ; *Internationality ; Iran ; Physicians/*legislation & jurisprudence ; United States
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  • 193
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    Nature Publishing Group (NPG)
    Publication Date: 2009-07-31
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dolgin, Elie -- England -- Nature. 2009 Jul 30;460(7255):556-7. doi: 10.1038/460556a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19641559" target="_blank"〉PubMed〈/a〉
    Keywords: Agriculture ; Animal Diseases/*prevention & control ; Animals ; Civil Defense/economics/*instrumentation/methods/*standards ; Containment of Biohazards/economics/instrumentation/methods/*standards ; Environment ; Laboratories/*standards ; United States
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  • 194
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    Nature Publishing Group (NPG)
    Publication Date: 2009-12-25
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hand, Eric -- England -- Nature. 2009 Dec 24;462(7276):978-83. doi: 10.1038/462978a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20033016" target="_blank"〉PubMed〈/a〉
    Keywords: Conservation of Natural Resources ; *Global Warming ; History, 20th Century ; History, 21st Century ; Nobel Prize ; *Physics ; Policy Making ; United States
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  • 195
    Publication Date: 2009-04-03
    Description: CRM1 (also known as XPO1 and exportin 1) mediates nuclear export of hundreds of proteins through the recognition of the leucine-rich nuclear export signal (LR-NES). Here we present the 2.9 A structure of CRM1 bound to snurportin 1 (SNUPN). Snurportin 1 binds CRM1 in a bipartite manner by means of an amino-terminal LR-NES and its nucleotide-binding domain. The LR-NES is a combined alpha-helical-extended structure that occupies a hydrophobic groove between two CRM1 outer helices. The LR-NES interface explains the consensus hydrophobic pattern, preference for intervening electronegative residues and inhibition by leptomycin B. The second nuclear export signal epitope is a basic surface on the snurportin 1 nucleotide-binding domain, which binds an acidic patch on CRM1 adjacent to the LR-NES site. Multipartite recognition of individually weak nuclear export signal epitopes may be common to CRM1 substrates, enhancing CRM1 binding beyond the generally low affinity LR-NES. Similar energetic construction is also used in multipartite nuclear localization signals to provide broad substrate specificity and rapid evolution in nuclear transport.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3437623/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3437623/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Dong, Xiuhua -- Biswas, Anindita -- Suel, Katherine E -- Jackson, Laurie K -- Martinez, Rita -- Gu, Hongmei -- Chook, Yuh Min -- 5-T32-GM008297/GM/NIGMS NIH HHS/ -- R01 GM069909/GM/NIGMS NIH HHS/ -- R01GM069909/GM/NIGMS NIH HHS/ -- R01GM069909-03S1/GM/NIGMS NIH HHS/ -- England -- Nature. 2009 Apr 30;458(7242):1136-41. doi: 10.1038/nature07975. Epub 2009 Apr 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology, University of Texas Southwestern Medical Center at Dallas, 6001 Forest Park, Dallas, Texas 75390-9041, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19339969" target="_blank"〉PubMed〈/a〉
    Keywords: Active Transport, Cell Nucleus ; Crystallography, X-Ray ; Epitopes ; Fatty Acids, Unsaturated/pharmacology ; Humans ; Hydrophobic and Hydrophilic Interactions ; Karyopherins/*chemistry/*metabolism ; Leucine/*metabolism ; Models, Molecular ; Nuclear Export Signals/*physiology ; Protein Binding/drug effects ; Protein Conformation ; Receptors, Cytoplasmic and Nuclear/*chemistry/*metabolism ; Structure-Activity Relationship ; Substrate Specificity ; snRNP Core Proteins/chemistry/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 196
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    Nature Publishing Group (NPG)
    Publication Date: 2009-09-11
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Abbott, Alison -- England -- Nature. 2009 Sep 10;461(7261):158. doi: 10.1038/461158a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19741676" target="_blank"〉PubMed〈/a〉
    Keywords: Animal Use Alternatives/economics/*methods/trends ; Animals ; Chemical Industry/economics/*methods ; Cosmetics/adverse effects/toxicity ; Europe ; Humans ; Mice ; Rats ; Toxicity Tests/economics/*methods/trends ; Toxicology/economics/*methods/trends ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 197
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    Nature Publishing Group (NPG)
    Publication Date: 2009-10-09
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Abbott, Alison -- England -- Nature. 2009 Oct 8;461(7265):706-7. doi: 10.1038/461706a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19812642" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Aging ; DNA-Directed DNA Polymerase/metabolism ; History, 20th Century ; History, 21st Century ; Humans ; *Nobel Prize ; Saccharomyces cerevisiae/genetics ; Telomerase/genetics/*metabolism ; Telomere/genetics/*metabolism ; Tetrahymena thermophila/genetics ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 198
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    Nature Publishing Group (NPG)
    Publication Date: 2009-05-30
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tollefson, Jeff -- England -- Nature. 2009 May 28;459(7246):492. doi: 10.1038/459493a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19478750" target="_blank"〉PubMed〈/a〉
    Keywords: Air Pollution/*legislation & jurisprudence/*prevention & control ; Conservation of Energy Resources/economics/*legislation & jurisprudence ; *Federal Government ; Green Chemistry Technology/economics/legislation & jurisprudence ; *Greenhouse Effect ; Time Factors ; United States ; Vehicle Emissions/legislation & jurisprudence/prevention & control
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 199
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    Nature Publishing Group (NPG)
    Publication Date: 2009-05-02
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Tollefson, Jeff -- England -- Nature. 2009 Apr 30;458(7242):1085. doi: 10.1038/4581085a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19407760" target="_blank"〉PubMed〈/a〉
    Keywords: Conservation of Energy Resources/economics ; *Federal Government ; Financing, Government/*economics ; Green Chemistry Technology/economics ; Private Sector/*economics ; Public Sector/economics ; Research/*economics ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 200
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    Nature Publishing Group (NPG)
    Publication Date: 2009-08-14
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Abbott, Alison -- England -- Nature. 2009 Aug 13;460(7257):788. doi: 10.1038/460788a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19675616" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Animals, Laboratory ; Biomedical Research/methods/trends ; Databases, Factual ; European Union ; Gene Knockout Techniques/trends ; Genomics/*trends ; Humans ; International Cooperation ; Mice ; *Models, Animal ; National Institutes of Health (U.S.) ; *Rats/genetics/physiology ; Systems Biology/methods/*trends ; United States
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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