ALBERT

Description: Although rising global sea levels will affect the shape of coastlines over the coming decades1, 2, the most severe and catastrophic shoreline changes occur as a consequence of local and regional-scale processes. Changes in sediment supply3 and deltaic subsidence4, 5, both natural or anthropogenic, and the occurrences of tropical cyclones4, 5 and tsunamis6 have been shown to be the leading controls on coastal erosion. Here, we use satellite images of South American mangrove-colonized mud banks collected over the past twenty years to reconstruct changes in the extent of the shoreline between the Amazon and Orinoco rivers. The observed timing of the redistribution of sediment and migration of the mud banks along the 1,500 km muddy coast suggests the dominant control of ocean forcing by the 18.6 year nodal tidal cycle7. Other factors affecting sea level such as global warming or El Niño and La Niña events show only secondary influences on the recorded changes. In the coming decade, the 18.6 year cycle will result in an increase of mean high water levels of 6 cm along the coast of French Guiana, which will lead to a 90 m shoreline retreat.

Description: Zircon is a common mineral in continental crustal rocks. As it is not easily altered in processes such as erosion or transport, this mineral is often used in the reconstruction of geological processes such as the formation and evolution of the continents. Zircon can also survive under conditions of the Earth’s mantle, and rare cases of zircons crystallizing in the mantle significantly before their entrainment into magma and eruption to the surface have been reported1,2,3. Here we analyse the isotopic and trace element compositions of large zircons of gem quality from the Eger rift, Bohemian massif, and find that they are derived from the mantle. (U–Th)/He analyses suggest that the zircons as well as their host basalts erupted between 29 and 24 million years ago, but fragments from the same xenocrysts reveal U–Pb ages between 51 and 83 million years. We note a lack of older volcanism and of fragments from the lower crust, which suggests that crustal residence time before eruption is negligible and that most rock fragments found in similar basalts from adjacent volcanic fields equilibrated under mantle conditions. We conclude that a specific chemical environment in this part of the Earth’s upper mantle allowed the zircons to remain intact for about 20–60 million years.

Description: Particulate (POM) and dissolved organic matter (DOM) released by the cold water corals Lophelia pertusa (L.) and Madrepora oculata (L.) was collected, analysed and quantitatively compared to that released by warm water reef-building corals. Particulate nitrogen (PN) and particulate organic carbon (POC) release rates of L. pertusa were 0.14 ± 0.07 mg N m–2 h–1 and 1.43 ± 1.22 mg C m–2 h–1, respectively, which is in the lower range of POM release rates measured for warm water corals, while dissolved organic carbon (DOC) release was 47 ± 19 mg C m–2 h–1. The resulting high DOC:POC ratio indicates that most cold water coral-derived organic matter immediately dissolved in the water column. Cold water corals, similar to their warm water counterparts, produced large amounts of nitrogen-rich coral mucus with C:N ratios of 5 to 7 for Lophelia- and 7 to 9 for Madrepora-derived mucus. A 7-fold increase in the oxygen consumption rates in cold water coral mucus-amended seawater containing the natural microbial assemblage indicates that this organic matter provided an attractive food source for pelagic microbes. In situ investigations at Røst Reef, Norway, showed that microbial activity in the seawater closest to the reef was 10 times higher than in the overlying water column. This suggests that cold water corals can stimulate microbial activity in the direct reef vicinity by the release of easily degradable and nutrient-rich organic matter, which may thereby function as a vector for carbon and nutrient cycling via the microbial loop in cold water coral reef systems.

Description: Scattered groups of these ancient fish may all stem from a single remote population. Coelacanths were discovered in the Comoros archipelago to the northwest of Madagascar in 1952. Since then, these rare, ancient fish have been found to the south off Mozambique, Madagascar and South Africa, and to the north off Kenya and Tanzania — but it was unclear whether these are separate populations or even subspecies. Here we show that the genetic variation between individuals from these different locations is unexpectedly low. Combined with earlier results from submersible and oceanographic observations1, 2, our findings indicate that a separate African metapopulation is unlikely to have existed and that locations distant from the Comoros were probably inhabited relatively recently by either dead-end drifters or founders that originated in the Comoros.

Description: As the complex interplay of forces in the ocean responds to climate change, the dynamics of global ocean circulation are shifting.

Description: Effects of elevated temperature on the formation and subsequent degradation of diatom aggregates were studied in a laboratory experiment with a natural plankton community from the Kiel Fjord (Baltic Sea). Aggregates were derived from diatom blooms that developed in indoor mesocosms at 2.5 and 8.5 degrees C, corresponding to the 1993 to 2002 mean winter in situ temperature of the Western Baltic Sea and the projected sea surface temperature during winter in 2100, respectively. Formation and degradation of diatom aggregates at these 2 temperatures in the dark were promoted with roller tanks over a period of 11 d. Comparison of the 2 temperature settings revealed an enhanced aggregation potential of diatom cells at elevated temperature, which was likely induced by an increased concentration of transparent exopolymer particles (TEP). The enhanced aggregation potential led to a significantly higher proportion of particulate organic matter in aggregates at 8.5 degrees C. Moreover, the elevated temperature favoured the growth of bacteria, bacterial biomass production, and the activities of sugar- and protein-degrading extracellular enzymes in aggregates. Stimulating effects of rising temperature on growth and metabolism of the bacterial community resulted in an earlier onset of aggregate degradation and silica dissolution. Remineralization of carbon in aggregates at elevated temperature was partially compensated by the formation of carbon-rich TEP during dark incubation. Hence, our results suggest that increasing temperature will affect both formation and degradation of diatom aggregates. We conclude that the vertical export of organic matter through aggregates may change in the future, depending on the magnitude and vertical depth penetration of warming in the ocean.

Description: There has been concern about recent temperature trends and the future effects of CO2 concentrations in the atmosphere1,2; but instrumental records only cover a few decades to a few centuries and it is essential that proxy data sources, such as pollen spectra from peats and lake sediments, be carefully interpreted as climate records. Several workers have shown statistically significant associations between the modern pollen rain and climatic parameters, an approach that by-passes the recognition of pollen/vegetation units. Statistically defined equations that associate abiotic and biotic elements are called transfer functions. We report here on the application of transfer function equations to nine middle and late Holocene peat and lake sediment sequences from northern Canada (Fig. 1).

Description: Organic detritus passing from the sea surface through the water column to the sea floor controls nutrient regeneration, fuels benthic life and affects burial of organic carbon in the sediment record. Particle trap systems have enabled the first quantification of this important process. The results suggest that the dominant mechanism of vertical transport is by rapid settling of rare large particles, most likely of faecal pellets or marine snow of the order of 〉200 μm in diameter, whereas the more frequent small particles have an insignificant role in vertical mass flux4–6. The ultimate source of organic detritus is biological production in surface waters of the oceans. I determine here an empirical relationship that predicts organic carbon flux at any depth in the oceans below the base of the euphotic zone as a function of the mean net primary production rate at the surface and depth-dependent consumption. Such a relationship aids in estimating rates of decay of organic matter in the water column, benthic and water column respiration of oxygen in the deep sea and burial of organic carbon in the sediment record.

Description: The new aromatic polyketides genoketide A1, genoketide A2 and prechrysophanol glucuronide are biosynthetic intermediates of the octaketide chrysophanol. They were isolated from the alkaliphilic strain Streptomyces sp. AK 671 together with the new metabolite chrysophanol glucuronide. The structures of the compounds were elucidated by mass spectrometry and NMR methods. Genoketide A2 exhibited a slight and prechrysophanol glucuronide a more pronounced inhibition of the proliferation of L5178y lymphoma cells.

Description: Predicting the evolution of climate over decadal timescales requires a quantitative understanding of the dynamics that govern the meridional overturning circulation (MOC)1. Comprehensive ocean measurement programmes aiming to monitor MOC variations have been established in the subtropical North Atlantic2, 3 (RAPID, at latitude 26.5° N, and MOVE, at latitude 16° N) and show strong variability on intraseasonal to interannual timescales. Observational evidence of longer-term changes in MOC transport remains scarce, owing to infrequent sampling of transoceanic sections over past decades4, 5. Inferences based on long-term sea surface temperature records, however, supported by model simulations, suggest a variability with an amplitude of plusminus1.5–3 Sv (1 Sv = 106 m3 s-1) on decadal timescales in the subtropics6. Such variability has been attributed to variations of deep water formation in the sub-arctic Atlantic, particularly the renewal rate of Labrador Sea Water7. Here we present results from a model simulation that suggest an additional influence on decadal MOC variability having a Southern Hemisphere origin: dynamic signals originating in the Agulhas leakage region at the southern tip of Africa. These contribute a MOC signal in the tropical and subtropical North Atlantic that is of the same order of magnitude as the northern source. A complete rationalization of observed MOC changes therefore also requires consideration of signals arriving from the south.

Description: Models of multiple potentially limiting nutrients currently employ either multiplicative or threshold formulations, neither of which has a sound mechanistic explanation. Despite experimental evidence that lack of P severely constrains N assimilation, this mechanism has not been considered for constructing models of multi-nutrient limitation. We construct a phytoplankton optimal growth model linking C, chlorophyll (Chl), N, and P through a limitation chain in which P limits N assimilation, N limits photosynthesis and photosynthesis limits growth. The resulting formulation possesses characteristics of both multiplicative and threshold approaches and provides a mechanistic foundation for modelling multi-nutrient and light limitation of phytoplankton growth. The model compares well with experimental observations for a variety of unicellular phytoplankton species. It is suggested that the widely held view that N and P limitation act independently of each other is based on an invalid interpretation of experimental observations and that the transition from N to P limitation occurs over a wide range of colimitation rather than a sharply-defined transition point. If the species considered in this study are representative for marine phytoplankton, our model results indicate that most phytoplankton are colimited by N and P when inorganic N and P are simultaneously exhausted in the surface ocean. The model suggests that the close match between marine inorganic (Redfield) and phytoplankton N:P ratios results from optimal nutrient utilisation but does not indicate optimality of Redfield N:P.

Description: The relationship between carbon dioxide and climate over millions of years has been a source of controversy. Fossilized liverwort leaves can help illuminate both temperature and atmospheric carbon dioxide levels from 200 to 60 million years ago.

Description: Despite similar physical properties, the Northern and Southern Atlantic subtropical gyres have different biogeochemical regimes. The Northern subtropical gyre, which is subject to iron deposition from Saharan dust1, is depleted in the nutrient phosphate, possibly as a result of iron-enhanced nitrogen fixation2. Although phosphate depleted, rates of carbon fixation in the euphotic zone of the North Atlantic subtropical gyre are comparable to those of the South Atlantic subtropical gyre3, which is not phosphate limited. Here we use the activity of the phosphorus-specific enzyme alkaline phosphatase to show potentially enhanced utilization of dissolved organic phosphorus occurring over much of the North Atlantic subtropical gyre. We find that during the boreal spring up to 30% of primary production in the North Atlantic gyre is supported by dissolved organic phosphorus. Our diagnostics and composite map of the surface distribution of dissolved organic phosphorus in the subtropical Atlantic Ocean reveal shorter residence times in the North Atlantic gyre than the South Atlantic gyre. We interpret the asymmetry of dissolved organic phosphorus cycling in the two gyres as a consequence of enhanced nitrogen fixation in the North Atlantic Ocean4, which forces the system towards phosphorus limitation. We suggest that dissolved organic phosphorus utilization may contribute to primary production in other phosphorus-limited ocean settings as well.

Description: The recent introduction of Gracilaria vermiculophylla (Rhodophyta) to the Kiel Fjord area was a reason for concern, since this red macroalga performs best under mesohaline conditions and thus appears well adapted to thrive and spread in the Baltic Sea environment, A systematic survey on a coastal range of 500 km in 2006 and 2007 indicated considerable Multiplication and spreading of G. vermiculophylla within Kiel Fjord, but provided little evidence of long-distance transport. Nonetheless, flow-through growth experiments conducted at a range of salinities under ambient light showed that G. vermiculophylla should be able to grow in most of the Baltic Sea. Growth declined only below a salinity of 5.5. High water temperatures in summer seem to reduce resistance against low salinity. Growth of G, vermiculophylla in the SW Baltic is limited by light and is only possible during summer and above a depth of 3 m. Drifting fragments are dispersed by currents. Either they sink to deeper waters, where they degrade, or they accumulate in shallow and sheltered waters, where they form perennial mats. These overgrow not only soft bottom sediments, but also stones, which are an important habitat to Fucus vesiculosus, the main native perennial alga in the Baltic Sea. As compared to F. vesiculosus, G. vermiculophylla seems to represent a preferred refuge for mesograzers and other invertebrates, particularly in winter. Nonetheless, feeding trials showed that potential grazers avoided G. vermiculophylla relative to F vesiculosus. Daily biomass uptake by grazers associated with G. vermiculophylla in nature did not exceed 2 g kg(-1) and is 〈11% of average daily net growth (18.5 g kg(-1)) in the first 2 m below sea level. Consequently, feeding may not be sufficient to control the spread of G. vermiculophylla in the SW Baltic. Our study suggests that absence of feeding enemies and adaptation to brackish water may allow G. vermiculophylla to invade most shallow coastal waters of the inner Baltic Sea despite light limitation.

Description: Ocean acidification and associated changes in seawater carbonate chemistry negatively influence calcification processes and depress metabolism in many calcifying marine invertebrates. We present data on the cephalopod mollusc Sepia officinalis, an invertebrate that is capable of not only maintaining calcification, but also growth rates and metabolism when exposed to elevated partial pressures of carbon dioxide (pCO(2)). During a 6 wk period, juvenile S. officinalis maintained calcification under similar to 4000 and similar to 6000 ppm CO2, and grew at the same rate with the same gross growth efficiency as did control animals. They gained approximately 4%, body mass daily and increased the mass of their calcified cuttlebone by over 500 %. We conclude that active cephalopods possess a certain level of pre-adaptation to long-term increments in carbon dioxide levels. Our general understanding of the mechanistic processes that limit calcification must improve before we can begin to predict what effects future ocean acidification will have on calcifying marine invertebrates.

Description: Generalist and opportunistic marine predators use flexible foraging behaviour to exploit prey bases that change in diversity and spatial and temporal distributions, Behavioural flexibility is constrained by characteristics Such as individual cognitive and physical capabilities, age, reproductive condition and central place foraging. To assess flexibility in the foraging tactics of a marine bird, we investigated the diets and foraging behaviour of the largest seabird predator in the North Atlantic Ocean. Northern gannets Sula bassana exploit abroad spectrum of pelagic prey that range in mass by more than 2 orders of magnitude, We investigated their foraging activity at their largest. offshore colony in the western Atlantic Ocean during 1998 to 2002, when they preyed primarily on shoals of spawning and post-spawning capelin Mallotus villosus, a small forage fish (similar to 15 g), and also on a much larger pelagic fish, post-smolt Atlantic salmon Salmo salar (similar to 200 g). Inter-annual dietary variation is associated with gannet and prey fish distributions. Landings of capelin at the colony by gannets were correlated with returns of larger foraging flocks from inshore, whereas landings of Atlantic salmon were associated with smaller flocks returning from offshore. Maximum foraging trip distances ranged from 20 to 200 km and averaged 57 +/- 12 (SE) km, consistent with distances to inshore capelin aggregations. When capelin abundance was low (in 2002), more gannets foraged offshore, preyed on large pelagic fishes (mostly Atlantic salmon) and exhibited the greatest dietary diversity. Though the Outbound portions of foraging trips were more sinuous than inbound routes, individual gannets exhibited general fidelity to foraging sites. These large avian predators used flexible foraging tactics to adjust to changing prey conditions and generate longer-term strategies to Lake advantage of diverse trophic interactions over a range of ocean ecosystems.

Description: Individual migratory schedules and wintering areas of northern gannets Morus bassanus were studied over 2 consecutive winters by deploying geolocation data loggers on breeding adults from the Bass Rock, UK. Northern gannets attended the breeding colony on Bass Rock until between 24 September and 16 October (median: 5 October). Afterwards, individual birds engaged in different migratory behaviour. Of the 22 birds tracked until at least December, 18% wintered in the North Sea and the English Channel, 27% in the Bay of Biscay and the Celtic Sea, 9% in the Mediterranean Sea and 45% off West Africa. Individual winter home ranges as measured by the 75% kernel density contours varied between 8 100 and 308 500 km(2) (mean = 134 000 km(2)). Several northern gannets migrated northwards from Bass Rock after leaving the colony for a stay of a few days to a few weeks, independent of whether they migrated to Africa or other southern areas later. Birds wintering off West Africa migrated to their wintering areas mostly within 3 to 5 wk, usually starting between early and late October. Most of these birds stayed off West Africa for a period of about 3 mo, where they remained in a relatively restricted area. Return migration was initiated between the end of January and mid-February, and took about as long as autumn migration. We conclude that individual gannets display very variable migratory behaviours, with discrete winter home ranges, and we infer that the migration habits of gannets may be changing in response to human impacts on marine ecosystems.

Description: We examined the influence of both season and hydrographic and meteorological factors on seabird abundance in the southern North Sea. Seabirds were counted from ships in a study area of 27.8 x 32.8 km on 407 d from 1990 to 2007. Two hydrographic and 5 meteorological parameters were taken from archived data. The relationships between bird abundance and abiotic parameters were investigated by generalised additive models for 3 distinct seasons. The species in the study area exhibited different seasonal patterns. While some species were present year-round, others occurred only at certain periods. Despite these substantial changes in abundances, the nature of the interactions between bird abundances and abiotic parameters did not vary much between seasons. All 5 meteorological and 2 hydrographic parameters significantly influenced the abundance of seabird species, though to a different degree. The single factors that most often had a significant influence in the single models were wind field, sea surface temperature anomaly, sea surface salinity anomaly and air pressure change. The quantitative composition of the seabird community differed significantly between onshore wind and offshore wind conditions. It is assumed that hydrographic parameters are relevant for the birds by determining their foraging habitats and that atmospheric parameters influence flight conditions during foraging and migration.

Description: Piceamycin, a new macrolactam polyketide antibiotic, was detected by HPLC-diode array screening in extracts of Streptomyces sp. GB 4-2, which was isolated from the mycorrhizosphere of Norway spruce. The structure of piceamycin was determined by mass spectrometry and NMR experiments. It showed inhibitory activity against Gram-positive bacteria, selected human tumor cell lines and protein tyrosine phosphatase 1B. The Journal of Antibiotics (2009) 62, 513-518; doi:10.1038/ja.2009.64; published online 17 July 2009

Description: Ecological stoichiometry can be a powerful tool to understand food web consequences of altered biogeochemical cycles as well as consequences of biodiversity loss on biogeochemistry and has proved to be a suitable framework to predict effects of consumers on the nutrient content of their prey. However, predictions from ecological stoichiometry have mainly been tested using single consumer species, whereas in most natural ecosystems several consumer species coexist. We conducted 2 outdoor mesocosm experiments with marine rock pool communities to test whether species richness and species combination of benthic invertebrates affected the nutrient content of periphyton. We independently manipulated 12 different consumer combinations ranging from 0 to 6 (2004) or 0 to 4 (2005) grazer species and measured the biomass and nutrient content of the algae. Grazers included 3 gastropods and 3 crustaceans. In 2005, we additionally analyzed animal nutrient content and N excretion rate. Algal biomass and C:N ratios decreased in the presence of grazers in both years, indicating that the remaining algae had higher internal N content. Also, both biomass (2004 and 2005) and C:N ratios (only 2004) decreased even further when grazer richness increased. In 2004, significant net diversity effects of grazer richness on periphyton C:N ratios indicated that periphyton N content under multispecies grazing could not be predicted from the effect of single species. In 2005, significant net diversity effects on C:N ratios were rare, but periphyton C:N ratios consistently decreased with increasing grazer excretion rate, indicating that higher nitrogen regeneration by grazers led to higher N incorporation by algae. The effects of species richness were mainly affected by the presence of one efficient grazer, the gastropod Littorina littorea. Our experiments indicate that non-additive intraguild interactions may qualitatively alter the stoichiometric effects of multispecies consumer assemblages.

Description: Effects of global warming on marine ecosystems are far less understood than they are in terrestrial environments. Macrophyte-based coastal ecosystems are particularly vulnerable to global warming, because they often lack species redundancy. We tested whether summer heat waves have negative effects on an ecologically important ecosystem engineer, the eelgrass Zostera marina L., and whether high genotypic diversity may provide resilience in the face of climatic extremes. In a mesocosm experiment, we manipulated genotypic diversity of eelgrass patches fully crossed with water temperature (control vs. temperature stress) over 5 mo. We found a strong negative effect of warming and a positive effect of genotypic diversity on shoot densities of eelgrass. These results suggest that eelgrass meadows and associated ecosystem services will be negatively affected by predicted increases in summer temperature extremes. Genotypic diversity may provide critical response diversity for maintaining seagrass ecosystem functioning, and for adaptation to environmental change.

Description: The effects of towed fishing gear on benthic fauna are under intense scrutiny and evidence is growing that trawling may significantly affect benthic communities in the North Sea. Most studies explore the current fauna or compare today’s situation with that of 2 or 3 decades ago, when North Sea-wide information on benthos and fishing became available. However, in the North Sea, extensive mechanised trawling began more than a century ago. This study compared historical and recent records in order to explore potential long-term links between changes in the epibenthos and fishing. Based on reconstructed species lists from museum specimens, we compared epibenthos data from 1902 to 1912 with those from 1982 to 1985 and 2000. We analysed changes in average taxonomic distinctness (AvTD), a biodiversity indicator, and changes in biogeographical species distributions. Landings data were collated for round- and flatfish caught in the northern, central and southern North Sea from 1906 to 2000 as proxies for total otter and beam trawl effort, respectively. These indicate that the southern and much of the central North Sea were fished intensively throughout the 20th century, whilst the northern North Sea was less exploited, especially in earlier decades; exploitation intensified markedly from the 1960s onwards. For epibenthos, the mean AvTD decreased significantly from the 1980s to 2000, when it was below expected values in 4 ICES rectangles, 3 of these located in heavily trawled areas. Biogeographical changes from the beginning to the end of the century occurred in 27 of 48 taxa. In 14 taxa, spatial presence was reduced by 50% or more, most notably in the southern and central North Sea; often these were long-lived, slow-growing species with vulnerable shells or tests. By contrast, 12 taxa doubled their spatial presence throughout the North Sea. Most biogeographical changes had happened by the 1980s. Given that other important environmental changes, including eutrophication and climate change, have gained importance mainly from the 1980s onwards, we have concluded that the changes in epibenthos observed since the beginning of the 20th century have resulted primarily from intensified fisheries.

Description: The relationship between physical properties of the water column and spatial patchiness of phytoplankton spring bloom development on the Greenland shelf edge and in the Irminger Sea was investigated using data collected during a spring cruise (April and May 2002). The observations confirm a strong relationship between the onset and stage of bloom development and the stratification induced by freshwater input to the surface layer in the shelf region. Interestingly, at the shelf, in the region influenced by melting of the seasonal ice-cover, the vertical distribution of chlorophyll a showed a subsurface maximum at ca. 25 m depth at several stations. Since nutrients were not exhausted at these stations, such a pattern does not conform to the general picture of a spring bloom. In contrast, in the open ocean part of the Irminger Sea pre-bloom conditions and a retarded development of the phytoplankton population were observed with low, more uniform distribution of chlorophyll a. The nitrate drawdown was estimated at between 16.5 and 270 µm m–2 (mean 108.6 ± 82.2 µm m–2) and the new primary production was estimated to be between 1.3 and 21.4 g C m–2 (8.6 ± 6.5 g C m–2), corresponding to 0.42 g C m–2 d–1. The phytoplankton community in the melting ice zone consisted of Phaeocystis sp., small flagellates (〈 4 µm) and picoplankton, while diatoms were less abundant. Phaeocystis sp. contributed up to 15 g C m–2 to the carbon biomass (70% of total carbon measured), whereas the contribution of diatoms and flagellates to carbon biomass was relatively low, with up to 1.2 g C m–2 (5.7%) and up to 2.5 g C m–2 (11.7%), respectively. On the shelf the bloom starts at the very beginning of stabilisation (elevated N2 values) which results solely from the release of meltwater. The locally restricted water stability leads to a patchy phytoplankton distribution in the Irminger Sea.

Description: Physical and chemical properties of the water column, along with meteorological conditions were examined for their relationship with phytoplankton biomass in the Irminger Sea during late autumn and early winter. Data were collected during 2 cruises to the region in November and December 2001 and November 2002. Phytoplankton biomass was approximated by (chl a) concentrations within the water column. When examined during autumn and winter alone, the Irminger Sea was suitably described as one biogeochemical region responding to varying meteorological forcing. Hydrographic differences within the region were not observed to have a significant effect on phytoplankton growth during this period. Strong correlations with latitude were seen in chl a concentrations, physical conditions (including mixed layer depth) and meteorological forcing (including net heat flux). Variability in autumn/winter phytoplankton growth conditions appears to be driven by light limitation modulated by meteorological forcing. The temporal and spatial scales of locations sampled in 2001 represent a progression in the physical and biological conditions from late autumn to early winter. Along this ‘virtual transect’, a baseline value of approximately 0.1 mg m–3 is seen in the mean chl a concentrations within the mixed layer. We postulate that convection provides a mechanism for reduction of net losses of phytoplankton, by helping to keep phytoplankton within the mixed layer. Under such conditions, a deeper and therefore more accurate estimation of the critical depth would be valid. Evidence of the extended maintenance of phytoplankton within the mixed layer is presented in the form of the relative dominances of different phytoplankton groups.

Description: Seafloor vents spewing mineral-rich plumes of hydrothermal fluid — termed black smokers — can persist at mid-ocean ridges for decades or longer. Earthquake data indicate that ongoing magma injection may determine their locations.

Description: Bacteria were isolated seasonally from the Mediterranean sponges Chondrilla nucula and Petrosia ficiformis and screened for antibacterial activities. Selected isolates were taxonomically identified by 16S rRNA gene sequencing. A total of 416 different bacterial strains were isolated, 60 (14.4%) of which displayed variable degrees of antimicrobial activity. Of the bioactive strains, 58.3% were able to inhibit Staphylococcus aureus, 6.7% were active against Bacillus subtilis, 11.7% against both Enterococcus faecalis and Escherichia coli, 38.3% against Pseudoalteromonas atlantica and 33.3% against Pseudomonas elongata. 16S rRNA gene sequence analysis showed that 2 isolates, 1 from seawater samples and 1 from P. ficiformis, were most closely related to Bacillus subtilis (99% similarity) and that another isolate from P. ficiformis was most closely related to a previously described sponge-associated Alphaproteobacterium NW001 (98% similarity). Two isolates from C. nucula were most closely related to Brachybacterium paraconglomeratum (99% similarity) and Shewanella algae (89% similarity). The high percentage of bioactive isolates derived from the 2 sponges suggests that marine microorganisms, whether animal-associated or planktonic, are promising sources for drug discovery.

Description: Marine sponges (phylum Porifera) are among the oldest multicellular animals (metazoans), the sea's most prolific producers of bioactive metabolites, and of considerable ecological importance due to their abundance and ability to filter enormous volumes of seawater. In addition to these important attributes, sponge microbiology is now a rapidly expanding field.

Description: The effect of ambient solar ultraviolet radiation (UVR) on a shallow-water (4 cm) tropical fouling community was assessed during the succession of macrobenthic species on artificial substrates at the Wong Shek fish farm, Hong Kong. The early successional communities developing under 3 radiation treatments (PAR + UV-A + UV-B = 280 to 700 nm; PAR + UV-A = 320 to 700 nm, and PAR = 400 to 700 nm) were monitored for 14 wk. A total of 8 species of algae and 8 species of invertebrates colonised the experimental tiles. During the first 8 wk of the experiments, there were no differences among treatments in diversity, percentage of cover of species and the biomass of the colonisers. During the following 6 wk, the communities exposed to UVR had lower species richness than the communities exposed to only PAR had. The species diversity (after 79 and 98 d) of the 3 treatments varied, but the total percentage of species cover and the entire community biomass were not significantly different across the experiment. Juveniles of the polychaete Hydroides elegans and the barnacle Balanus amphitrite, juveniles of the clams Perna viridis and Modiolus comptus, and the algae Enteromorpha sp., Ectocarpus sp. and Cladophora sp. were responsible for the dissimilarity between communities developed under different UVR treatments. The algae constituted a higher percentage of the cover under the full sunlight spectrum, whereas the polychaete, the barnacle and the clams were dominant in the no-UVR treatment. Our outdoor experiment revealed that UVR inhibited the settlement and decreased post-settlement survival of H. elegans. We concluded that UVR affects the composition of early successional, shallow water biofouling communities in tropical waters as well as the settlement and mortality of single species.

Description: We investigated connections between subtropical Atlantic climate variability, atmospheric conditions in the European Alpine region (45 to 47° N and 5 to 8° E) and the interannual variability of the thermal conditions in the largest body of freshwater in Western Europe (Lake Geneva). The long-term water temperature was related to climate variability by means of a multivariate regression model. Results revealed atmospheric connections that have been elusive so far, and showed that over the period from 1959 to 2000, summer thermal conditions in Lake Geneva appear tightly linked to the long-term variability of the subtropical Atlantic climate. The multivariate model revealed high skills and tight correlations, which suggest the possibility of assessing future thermal changes in Lake Geneva from the Atlantic climate variability. The implications of such climatic forcing on the functioning of the pelagic ecosystem in Lake Geneva were illustrated by analysing the long-term changes in abundance of the summer-dominant carnivorous cladocerans Bythotrephes longimanus and Leptodora kindtii during the period 1974 to 2000. Again, the multivariate model revealed high skills and excellent correlations between the interannual changes in abundance of these species and the variability of summer climate. Our approach provides a general understanding of the interrelations between large- and regional-scale climates, local environmental conditions and the ecological responses in Lake Geneva during summer, and is therefore applicable to other retrospective studies.

Description: Resolving flow geometry in the mantle wedge is central to understanding the thermal and chemical structure of subduction zones, subducting plate dehydration, and melting that leads to arc volcanism, which can threaten large populations and alter climate through gas and particle emission. Here we show that isotope geochemistry and seismic velocity anisotropy provide strong evidence for trench-parallel flow in the mantle wedge beneath Costa Rica and Nicaragua. This finding contradicts classical models, which predict trench-normal flow owing to the overlying wedge mantle being dragged downwards by the subducting plate. The isotopic signature of central Costa Rican volcanic rocks is not consistent with its derivation from the mantle wedge1, 2, 3 or eroded fore-arc complexes4 but instead from seamounts of the Galapagos hotspot track on the subducting Cocos plate. This isotopic signature decreases continuously from central Costa Rica to northwestern Nicaragua. As the age of the isotopic signature beneath Costa Rica can be constrained and its transport distance is known, minimum northwestward flow rates can be estimated (63–190 mm yr-1) and are comparable to the magnitude of subducting Cocos plate motion (approx85 mm yr-1). Trench-parallel flow needs to be taken into account in models evaluating thermal and chemical structure and melt generation in subduction zones.

Description: In the context of gradual Cenozoic cooling, the timing of the onset of significant Northern Hemisphere glaciation 2.7 million years ago is consistent with Milankovitch's orbital theory, which posited that ice sheets grow when polar summertime insolation and temperature are low. However, the role of moisture supply in the initiation of large Northern Hemisphere ice sheets has remained unclear. The subarctic Pacific Ocean represents a significant source of water vapour to boreal North America, but it has been largely overlooked in efforts to explain Northern Hemisphere glaciation. Here we present alkenone unsaturation ratios and diatom oxygen isotope ratios from a sediment core in the western subarctic Pacific Ocean, indicating that 2.7 million years ago late-summer sea surface temperatures in this ocean region rose in response to an increase in stratification. At the same time, winter sea surface temperatures cooled, winter floating ice became more abundant and global climate descended into glacial conditions. We suggest that the observed summer warming extended into the autumn, providing water vapour to northern North America, where it precipitated and accumulated as snow, and thus allowed the initiation of Northern Hemisphere glaciation.

Description: It is widely assumed that the production of secondary metabolites against grazing and fouling is costly for seaweeds in terms of metabolic energy and should therefore be reduced under conditions of resource limitation. Here we tested the hypothesis that anti-herbivore defenses and bioactivity against mussels in 4 brown seaweeds from northern-central Chile will be reduced when light is limited. In a 2 wk experiment, seaweeds were kept under different low-light conditions (~76 to 99% reduction of ambient sunlight) and grazing situations. Subsequently, we tested their anti-herbivore defense against a common amphipod grazer in feeding assays with living algal tissue and reconstituted food pellets. A standard test employing the production of byssus threads by mussels was furthermore used as an indicator for deterrents in crude algal extracts. All investigated seaweeds showed decreased growth under the stepwise light reduction. Lessonia nigrescens exhibited reduced defense ability under severe low-light conditions when living tissue was offered to the amphipod, probably caused by changes in the tissue structure or in nutritional traits. In Dictyota kunthii, L. trabeculata and Macrocystis integrifolia this effect was absent. None of the investigated seaweeds showed a clear effect of light reduction on chemically mediated defenses against the mesograzer and there was no effect of light limitation on the bioactivity against mussels. Thus, against general assumptions, chemical defense in the investigated seaweeds does not appear to be reduced under severe resource limitation. Results suggest that seaweeds may use different strategies of energy allocation to cope with low-light conditions.

Description: The abundance and diversity of microorganisms on the surface of the tropical green macroalga Caulerpa racemosa var. turbinata and the effect of algal surface and waterborne compounds on fouling organisms were investigated both in laboratory and field experiments. As shown via electron microscopic enumeration, the abundance of epibiotic bacteria and diatoms on algal frond surfaces was not significantly different from the reference biofilms harvested from stones in the C. racemosa habitat. The analysis of Terminal Restriction Fragment Length Polymorphism of DNA from algal surface-associated bacterial communities revealed that despite a similar abundance of these bacteria, the community profile on algal frond surfaces differed significantly from that of inanimate, undefended substrates. These results suggest that the alga regulate the occurrence of certain bacterial ribotypes. This result was in accordance with the fact that different bacterial communities formed on the artificial substrata (i.e. Petri dishes) placed in the C. racemosa habitat and alga-free control sites. Neither C. racemosa conditioned seawater (CCW) nor hexane surface extracts affected the growth of bacterial isolates from biofilms. However, only CCW exhibited a toxic effect on the larvae of the fouling polychaete Hydroides elegans, and evoked abnormal larval development in a concentration-dependent fashion. At sublethal concentrations, the 〈1 kD fraction of CCW inhibited the larval settlement of H. elegans and the bryozoan Bugula neritina. Caulerpenyne, the prominent bioactive metabolite in the genus Caulerpa, was not detected in CCW by chromatographic procedures. Our data suggest that waterborne compounds other than caulerpenyne are involved in the chemical defense of the alga C. racemosa.

Description: The enhanced Arctic warming over the past three decades is attracting much attention. Combining forward and inverse models with observations suggests that regional changes in aerosol concentrations have contributed significantly.

Description: The foraging modes of calanoid copepods differ in that stationary suspension-feeding is more easily detected by prey with strong escape responses (ciliates) than is ‘cruising’ or ‘ambushing’ feeding. Thus, the ability of a copepod to include heterotrophic prey in its diet may be associated with its foraging mode and, further, with its nitrogen stable isotope signature (δ15N). This is because a more carnivorous diet may be expected to result in a higher δ15N. We tested this hypothesis in a mesocosm study using a density gradient (0 to 80 ind. l-1) of calanoid copepods. We expected copepod δ15N to generally increase with decreasing copepod density because of increased food availability, and predicted stronger increases for cruising than for stationary suspension-feeding species. As an assemblage, copepods had a pronounced impact on the food web: diatoms and ciliates decreased, whereas nanoflagellates increased with increasing copepod density. As expected, Centropages hamatus, a cruising species, showed the strongest isotopic increase and also highest population growth at low copepod density, suggesting that it was the most efficient species in capturing ciliates. Temora longicornis, a stationary suspension-feeder, showed a uniform isotopic increase in all mesocosms, which we believe resulted from nutritional stress arising from poor feeding on both ciliates (too fast for ingestion by T. longicornis) and nanoflagellates (too small). However, Pseudocalanus elongatus, a species equally categorised as a stationary suspension-feeder, showed increases in its δ15N similar to those for C. hamatus. While this may indicate potential switching in its foraging mode, alternative explanations cannot be ruled out, partly because qualitative and quantitative aspects of trophic enrichment in our experiment could not be clearly separated. This study shows that consumer δ15N are difficult to interpret, even if potential food sources and aspects of the species’ biology are known, and thus emphasises the necessity for further laboratory studies to help better interpret zooplankton δ15N in the field.

Description: Eggs and larvae of Baltic sprat Sprattus sprattus L. were collected during 14 cruises covering the spawning season in 2002 in Bornholm Basin. Main egg and larval production was in April, with a second small peak in June 2002. The in situ larval abundance was corrected for transport processes by hydrodynamic model runs. Corrected larval abundance estimates were compared to initial larval production to derive an index of larval mortality. This index suggested a much higher survival of summer- over spring-born sprat larvae, with pronounced differences in survival for larvae 〉11 mm. Independent evidence for this survival pattern was gained by measured RNA:DNA ratios in sprat larvae hatched from April to July 2002 and was linked to temporal variability in potential prey abundance. We found higher mean but less variable RNA:DNA ratios in spring- than in summer-born larvae, indicating a strong selection for fast growth in April and May but a less selective environment in June and July. Zooplankton data revealed high naupliar concentrations of Acartia spp. (a key dietary component of sprat) in April and May, but very low concentrations of larger prey items such as copepodites or adults. In contrast, abundance of larger prey increased considerably in June and July. The results suggest that larger sprat (〉11 mm) in April and May 2002 may have been food limited and, therefore, had lower rates of survival, supporting the underlying hypothesis of size-specific, temporally limited ‘windows of survival’ linked to the availability of suitable prey.

Description: The intermediate disturbance hypothesis (IDH) predicts maximal diversity at intermediate levels of disturbance, but the validity of this hypothesis is controversially discussed. In this study, results of a field experiment, which was conducted on the northern-central Chilean coast, are presented. Fouling communities on artificial settlement substrata were studied. A total of 7 disturbance frequencies were applied to previously established communities, and a single disturbance event resulted in a removal of ~20% of the biomass. Species cover was estimated at the end of the experimental period, and it was found that diversity was strongly affected by disturbance frequency. With high disturbance frequencies the composition of the community was changed, with a decrease in the solitary ascidian Pyura chilensis (Molina 1782). The decrease of P. chilensis resulted in an increase of the colonial ascidian Diplosoma sp. A unimodal relationship between disturbance frequency and species richness was found, supporting the IDH. The results suggest that disturbance sustains diversity by reducing the abundance of the dominant species (e.g. P. chilensis), preventing competitive exclusion of the subordinate species, thus allowing subordinate species to re-emerge when competition is alleviated by disturbance. The results also suggest that these species show a trade-off between competitive and colonizing abilities, pointing to the existence of a competitive hierarchy. Therefore, the presence of competitive exclusion and disturbance-induced suppression of the dominant species remains a crucial mechanism, permitting species coexistence in the context of the IDH in the system studied.

Description: We describe an integrated database on European macrobenthic fauna, developed within the framework of the European Network of Excellence MarBEF, and the data and data integration exercise that provided its content. A total of 44 datasets including 465354 distribution records from soft-bottom macrobenthic species were uploaded into the relational MacroBen database, corresponding to 22897 sampled stations from all European seas, and 7203 valid taxa. All taxonomic names were linked to the European Register of Marine Species, which was used as the taxonomic reference to standardise spelling and harmonise synonymy. An interface was created, allowing the user to explore, subselect, export and analyse the data by calculating different indices. Although the sampling techniques and intended use of the datasets varied tremendously, the integrated database proved to be robust, and an important tool for studying and understanding large-scale long-term distributions and abundances of marine benthic life. Crucial in the process was the willingness and the positive data-sharing attitude of the different data contributors. Development of a data policy that is highly aware of sensitivities and ownership issues of data providers was essential in the creation of this goodwill.

Description: Bimodal depth distribution patterns observed for sprat Sprattus sprattus larvae in previous field studies conducted in the deep basins of the Baltic Sea have led researchers to hypothesise that larval sprat condition was depth-dependent. We examined this hypothesis by measuring morphological, biochemical and otolith-based proxies for nutritional condition in sprat larvae collected in discrete 5 m depth intervals from the surface to the bottom in the central Bornholm Basin. Similar to earlier studies, larval sprat were most abundant in 2 depth strata (0 to 10 and 65 to 75 m). Their nutritional condition in surface and deep waters was not uniformly expressed by the different indices. For example, sprat larvae from 0 to 10 m could not be distinguished from conspecifics caught at 65 to 75 m by a long-latency condition proxy (otolith-based growth rates). Similarly, a medium-latency proxy (RNA:DNA) did not suggest differences in condition between the depths. However, short-latency proxies (protein:standard length and DNA:dry weight) supported the depth-dependent condition hypothesis. The lack of correspondence and pitfalls associated with the use and interpretation of multiple condition indices (e.g. the influences of temperature and body size) are discussed and recommendations to strengthen these various metrics are provided.

Description: The occurrence of the ctenophore Mnemiopsis leidyi as a new invasive species in the Baltic Sea and the potential consequences for fish stock recruitment was investigated in spring 2007. The study focused on the Bornholm Basin, which serves as the major spawning ground for cod and sprat, the commercially most important fish stocks in the Baltic. The distribution pattern of M. leidyi revealed a substantial overlap with cod eggs. The observed predation of M. leidyi on eggs has the potential to alter the recruitment success of cod, which is the top predator in the system and, thus, to change the Baltic food-web structure.

Description: Deep-sea whale falls create sulfidic habits Supporting chemoautotrophic communities, but microbial processes underlying the formation Of Such habitats remain poorly evaluated. Microbial degradation processes (sulfate reduction, methanogenesis) and biogeochemical gradients were studied in a whale-fall habitat created by a 30 t whale carcass deployed at 1675 m depth for 6 to 7 yr on the California margin. A variety of measurements were conducted including photomosaicking, microsensor measurements, radio-tracer incubations and geochemical analyses. Sediments were Studied at different distances (0 to 9 in) from the whale fall. Highest microbial activities and steepest vertical geochemical gradients were found within 0.5 m of the whale fall, revealing ex situ sulfate reduction and in vitro methanogenesis rates of up to 717 and 99 mmol m(-2) d(-1), respectively. In sediments containing whale biomass, methanogenesis was equivalent to 20 to 30%, of sulfate reduction. During in vitro sediment studies, sulfide and methane were produced within days to weeks after addition of whale biomass, indicating that chemosynthesis is promoted at early stages of the whale fall. Total sulfide production from sediments within 0.5 m of the whale fall was 2.1 +/- 3 and 1.5 +/- 2.1 mol d(-1) in Years 6 and 7, respectively, of which similar to 200 mmol d(-1) were available as free sulfide. Sulfate reduction in bones was much lower, accounting for a total availability of similar to 10 mmol sulfide d(-1). Over periods of at least 7 yr, whale falls can create sulfidic conditions similar to other chemosynthetic habitats Such as cold seeps and hydrothermal vents.

Description: The climate of the North Atlantic region exhibits fluctuations on decadal timescales that have large societal consequences. Prominent examples include hurricane activity in the Atlantic1, and surface-temperature and rainfall variations over North America2, Europe3 and northern Africa4. Although these multidecadal variations are potentially predictable if the current state of the ocean is known5, 6, 7, the lack of subsurface ocean observations8 that constrain this state has been a limiting factor for realizing the full skill potential of such predictions9. Here we apply a simple approach—that uses only sea surface temperature (SST) observations—to partly overcome this difficulty and perform retrospective decadal predictions with a climate model. Skill is improved significantly relative to predictions made with incomplete knowledge of the ocean state10, particularly in the North Atlantic and tropical Pacific oceans. Thus these results point towards the possibility of routine decadal climate predictions. Using this method, and by considering both internal natural climate variations and projected future anthropogenic forcing, we make the following forecast: over the next decade, the current Atlantic meridional overturning circulation will weaken to its long-term mean; moreover, North Atlantic SST and European and North American surface temperatures will cool slightly, whereas tropical Pacific SST will remain almost unchanged. Our results suggest that global surface temperature may not increase over the next decade, as natural climate variations in the North Atlantic and tropical Pacific temporarily offset the projected anthropogenic warming.

Description: The diazotrophic cyanobacterium Trichodesmium is a significant contributor to marine nitrogen and carbon cycles and has been incorporated in biogeochemical ocean circulation models. To date, parameterization of light as a controlling factor for nitrogen fixation has been based on field observations, where factors other than light also affect Trichodesmium physiology. Here we present data on light-dependent (15 to 1100 µmol quanta m–2 s–1) diazotrophic growth from controlled laboratory experiments and their implications for modeling approaches. We supply a simple empirical model to describe nitrogen fixation by Trichodesmium in batch cultures. Diazotrophic growth of axenic Trichodesmium IMS-101 was light saturated at 180 µmol quanta m–2 s–1 and did not vary significantly at higher photon irradiances up to 1100 µmol quanta m–2 s–1 (μcarbon based ≈ 0.26 d–1). Chlorophyll a (chl a) normalized N2 fixation rates were significantly affected by light intensity during mid-exponential growth (0.74 to 4.45 mol N fixed mol chl a–1 h–1) over the range of photon irradiances tested. In contrast, nitrogen fixation rates normalized to the cellular carbon content were relatively unaffected by light intensity (0.42 to 0.59, averaging 0.5 mmol N mol particulate organic carbon [POC]–1 h–1). Trichodesmium carbon biomass can be used to estimate the nitrogen input by this diazotroph into the ocean; the maximum input rate is 350 nmol N fixed l–1 h–1.

Description: Ninety-five million years ago, ocean bottom waters were much warmer than at present. Some of this warmth could have come from the proto-North Atlantic's continental shelves after the balmy surface waters became increasingly salty through evaporation.

Description: Anterior/posterior (a/p) compression of the vertebral column, referred to as 'short tails', is a recurring event in farmed Atlantic salmon. Like other skeletal deformities, the problem usually becomes evident in a late life phase, too late for preventive measures, making it difficult to understand the aetiology of the disease. We use structural, radiological, histological, and mineral analyses to study 'short tail' adult salmon and to demonstrate that the study of adult fish can provide important insights into earlier developmental processes. 'Short tails' display a/p compressed vertebrae throughout the spine, except for the first post-cranial vertebrae. The vertebral number is unaltered, but the intervertebral space is reduced and the vertebrae are shorter. Compressed vertebrae are characterized by an unchanged central part, altered vertebral end plates (straight instead of funnel-shaped), an atypical inward bending of the vertebral edges, and structural alterations in the intervertebral tissue. The spongiosa is unaffected. The growth zones of adjacent vertebrae fuse and blend towards the intervertebral space into chondrogenic tissue. This tissue produces different types of cartilage, replacing the notochord. The correspondence in location of intervertebral cartilage and deformed vertebral end plates, and the clearly delimited, unaltered, central vertebral parts suggest that the a/p compression of vertebral bodies is a late developmental disorder that may be related to a metaplastic shift of osteogenic tissue into chondrogenic tissue in the vertebral growth zone. Given the lack of evidence for infections, metabolic disorders and/or genetic disorders, we propose that an altered mechanical load could have caused the transformation of the bone growth zones and the concomitant replacement of the intervertebral (notochord) tissue by cartilaginous tissues in the 'short tails' studied here. This hypothesis is supported by the role that notochord cells are known to play in spine development and in maintaining the structure of the intervertebral disk.

Description: Multiple stable isotope and fatty acid analyses were applied to examine food web dynamics in an eelgrass Zostera marina L. system in the western Baltic Sea. Samples of eelgrass, epiphytic algae, sand microflora, red algae, phytoplankton and main consumer species were collected in June 2002. delta C-13 values of primary producers ranged from -9.6%. for eelgrass to the most depleted value of -34.9%. for the most abundant red alga, Delesseria sanguinea, Epiphyte delta C-13 (-11.3 parts per thousand.) was close to the value for eelgrass, whereas sand microflora and phytoplankton showed intermediate values (-20.0 and -22.6 parts per thousand, respectively). delta C-13 values of consumer species varied from - 12.2 parts per thousand in the gastropod Lacuna vincta to -23.9 parts per thousand in the amphipod Amphitoe rubricata. Epiphytes, sand microflora and phytoplankton had relatively similar fatty acid signatures, indicating a dominance of diatoms. Fatty acid composition of the main consumers included the biomarker fatty acids for diatoms and red algae, whereas those for eelgrass were negligible. The stable isotope data in combination with the results of the fatty acid analysis strongly indicated that the food web in this eelgrass community was based on epiphytes, sand microflora and red algae. Additionally, the continuous distribution of delta N-15 values implied a food web that was characterized by a large proportion of generalist feeders in every group of consumers and by a high degree of omnivory.

Description: The transport of warm and salty Indian Ocean waters into the Atlantic Ocean—the Agulhas leakage—has a crucial role in the global oceanic circulation1 and thus the evolution of future climate. At present these waters provide the main source of heat and salt for the surface branch of the Atlantic meridional overturning circulation (MOC)2. There is evidence from past glacial-to-interglacial variations in foraminiferal assemblages3 and model studies4 that the amount of Agulhas leakage and its corresponding effect on the MOC has been subject to substantial change, potentially linked to latitudinal shifts in the Southern Hemisphere westerlies5. A progressive poleward migration of the westerlies has been observed during the past two to three decades and linked to anthropogenic forcing6, but because of the sparse observational records it has not been possible to determine whether there has been a concomitant response of Agulhas leakage. Here we present the results of a high-resolution ocean general circulation model7, 8 to show that the transport of Indian Ocean waters into the South Atlantic via the Agulhas leakage has increased during the past decades in response to the change in wind forcing. The increased leakage has contributed to the observed salinification9 of South Atlantic thermocline waters. Both model and historic measurements off South America suggest that the additional Indian Ocean waters have begun to invade the North Atlantic, with potential implications for the future evolution of the MOC.

Description: Living (Rose Bengal stained) foraminifera in gas-hydrate-influenced sediments at the Cascadia convergent margin were investigated. Foraminiferal assemblages from the southern Hydrate Ridge and neighboring basins were compared in terms of abundances, vertical distribution, diversity, and species composition. At Hydrate Ridge, the presence of shallow gas hydrates and increased porewater sulfide concentrations was indicated by extensive bacterial mats of Beggiatoa sp. and clam beds of the bivalve mollusk Calyptogena sp., generating different biological zones. Living foraminifera were found in all biological zones, in sediment layers down to 5 cm. They showed highly variable densities within all zones. The average abundance of benthic foraminifera at Hydrate Ridge differs from neighboring basins. Average species diversities are comparable between biological zones, while the average number of species increases from bacterial mats to clam fields and surrounding sediments. Foraminifera can be characterized by 5 principal component communities which explain 97.3% of the variance of the live assemblages at the southern Hydrate Ridge and neighboring basins. At Hydrate Ridge, 2 foraminiferal zones can be distinguished: (1) an Uvigerina peregrina community which characterizes sediments covered with bacterial mats and clam fields; (2) a ?Spiroplectammina biformis community in the surrounding non-seep sediments. Foraminiferal assemblages in the neighboring Western and Eastern Basin differ from the Hydrate Ridge stations.

Description: The early oceanographic history of the Arctic Ocean is important in regulating, and responding to, climatic changes. However, constraints on its oceanographic history preceding the Quaternary (the past 1.8 Myr) have become available only recently, because of the difficulties associated with obtaining continuous sediment records in such a hostile setting. Here, we use the neodymium isotope compositions of two sediment cores recovered near the North Pole to reconstruct over the past approx15 Myr the sources contributing to Arctic Intermediate Water, a water mass found today at depths of 200 to 1,500 m. We interpret high neodymium ratios for the period between 15 and 2 Myr ago, and for the glacial periods thereafter, as indicative of weathering input from the Siberian Putoranan basalts into the Arctic Ocean. Arctic Intermediate Water was then derived from brine formation in the Eurasian shelf regions, with only a limited contribution of intermediate water from the North Atlantic. In contrast, the modern circulation pattern, with relatively high contributions of North Atlantic Intermediate Water and negligible input from brine formation, exhibits low neodymium isotope ratios and is typical for the interglacial periods of the past 2 Myr. We suggest that changes in climatic conditions and the tectonic setting were responsible for switches between these two modes.

Description: Zooplankton synthesise astaxanthin, a carotenoid pigment believed to protect against high-energy irradiance, from precursors in their diet. Different patterns of astaxanthin vertical distribution would be expected from the benefits of photoprotection, the costs of visual predation and the availability of food. Despite a highly resolved sampling approach (4 m depth intervals), no clear pattern of vertical distribution or correlation with chlorophyll a concentrations was found for Calanus helgolandicus astaxanthin concentrations in the German Bight. This may be attributable to photochromatic adaptation in phytoplankton, diurnal rhythms of copepod grazing and, particularly, vertical migration. A 2 × 2 factorial (light × food) experiment showed that total astaxanthin concentrations in C. helgolandicus were entirely determined by the dynamics of esterified astaxanthin. As expected, the concentrations of astaxanthin esters decreased in starved individuals in the dark, while the combined presence of food and light resulted in an increase of esterified astaxanthin. Similar levels of esterified astaxanthin were maintained in both starving individuals exposed to light and feeding individuals in the dark. The latter implies that astaxanthin esterification is per se a process independent of light, although light exposure enhances it. It is proposed that the function of astaxanthin esters is to generally improve the antioxidant protection of storage lipids, also in situations where photoprotection is not required.

Description: Embryo survival, larval standard length, yolk-sac area, yolk utilization and resistance to starvation were significantly influenced by the female parent and the interaction between both parents of Baltic Sea cod Gadus morhua in a gamete factorial cross of 3 females and 5 males in all possible combinations. The proportion of variance in embryonic survivorship that was due to maternity during incubation was significant during the first 4 d, but was insignificant during the 5 to 9 d interval. During the 5 to 9 d interval, the male–female interaction was significant. Standard lengths at hatch and 5 d post hatch and specific growth rate of unfed yolk-sac larvae were strongly influenced by the female. Equivalent amounts of variation in larval resistance to starvation were explained by maternity and bi-parental interaction. Paternity alone did not explain a significant amount of variation for the traits or processes examined. The bi-parental interactions reported demonstrate a female’s choice of mate could significantly influence the early life survivorship of Baltic cod offspring.

Description: Organic-rich sedimentary units called sapropels have formed repeatedly in the eastern Mediterranean Sea, in response to variations of solar radiation. Sapropel formation is due to a change either in the flux of organic matter to the sea floor from productivity changes or in preservation by bottom-water oxygen levels. However, the relative importance of surface-ocean productivity versus deep-water preservation for the formation of these organic-rich shale beds is still being debated, and conflicting interpretations are often invoked1, 2, 3, 4, 5, 6, 7. Here we analyse at high resolution the differences in the composition of the most recent sapropel, S1, in a suite of cores covering the entire eastern Mediterranean basin. We demonstrate that during the 4,000 years of sapropel formation, surface-water salinity was reduced and the deep eastern Mediterranean Sea, below 1,800 m depth, was devoid of oxygen. This resulted in the preferential basin-wide preservation of sapropel S1 with different characteristics above and below 1,800 m depth as a result of different redox conditions. We conclude that climate-induced stratification of the ocean may therefore contribute to enhanced preservation of organic matter in sapropels and potentially also in black shales.

Description: We investigated the nutritional condition of larval fishes caught in daily ichthyoplankton hauls in the ‘Helgoland Roads’ (54°11.18’N and 07°54.00’E) from February to June 2004. We concentrated on larvae of dab Limanda limanda and lesser sandeel Ammodytes marinus in order to compare early life stages of iteroparous and nearly semelparous fish. We analysed length, weight and RNA:DNA ratios as a proxy for condition of the larvae. The relationship between larval nutritional condition and larval size provided an indication of condition-selective mortality due to a loss of larvae in poor condition from the larger size-classes. For the sandeel, larvae in good condition were present in all size-classes, whereas for the dab maximum larval condition increased with increasing size. Variability in both standard length and condition was high in the 2 species during their planktonic stage. Both species showed good nutritional condition in the early to mid portion of the recruitment period and declines in condition in late April. This was more pronounced in larval dab, which showed a higher dependency on feeding conditions than larval sandeel. Together, these findings indicate a more conservative strategy of early life stages of the nearly semelparous sandeel compared with the iteroparous dab.

Description: The history of the Arctic Ocean during the Cenozoic era (0–65 million years ago) is largely unknown from direct evidence. Here we present a Cenozoic palaeoceanographic record constructed from 〉400 m of sediment core from a recent drilling expedition to the Lomonosov ridge in the Arctic Ocean. Our record shows a palaeoenvironmental transition from a warm 'greenhouse' world, during the late Palaeocene and early Eocene epochs, to a colder 'icehouse' world influenced by sea ice and icebergs from the middle Eocene epoch to the present. For the most recent approx14 Myr, we find sedimentation rates of 1–2 cm per thousand years, in stark contrast to the substantially lower rates proposed in earlier studies; this record of the Neogene reveals cooling of the Arctic that was synchronous with the expansion of Greenland ice (approx3.2 Myr ago) and East Antarctic ice (approx14 Myr ago). We find evidence for the first occurrence of ice-rafted debris in the middle Eocene epoch (approx45 Myr ago), some 35 Myr earlier than previously thought; fresh surface waters were present at approx49 Myr ago, before the onset of ice-rafted debris. Also, the temperatures of surface waters during the Palaeocene/Eocene thermal maximum (approx55 Myr ago) appear to have been substantially warmer than previously estimated. The revised timing of the earliest Arctic cooling events coincides with those from Antarctica, supporting arguments for bipolar symmetry in climate change.

Description: Deep-water formation in the northern North Atlantic Ocean and the Arctic Ocean is a key driver of the global thermohaline circulation and hence also of global climate1. Deciphering the history of the circulation regime in the Arctic Ocean has long been prevented by the lack of data from cores of Cenozoic sediments from the Arctic's deep-sea floor. Similarly, the timing of the opening of a connection between the northern North Atlantic and the Arctic Ocean, permitting deep-water exchange, has been poorly constrained. This situation changed when the first drill cores were recovered from the central Arctic Ocean2. Here we use these cores to show that the transition from poorly oxygenated to fully oxygenated ('ventilated') conditions in the Arctic Ocean occurred during the later part of early Miocene times. We attribute this pronounced change in ventilation regime to the opening of the Fram Strait. A palaeo-geographic and palaeo-bathymetric reconstruction of the Arctic Ocean, together with a physical oceanographic analysis of the evolving strait and sill conditions in the Fram Strait, suggests that the Arctic Ocean went from an oxygen-poor 'lake stage', to a transitional 'estuarine sea' phase with variable ventilation, and finally to the fully ventilated 'ocean' phase 17.5 Myr ago. The timing of this palaeo-oceanographic change coincides with the onset of the middle Miocene climatic optimum3, although it remains unclear if there is a causal relationship between these two events.

Description: The causes and consequences of the coexistence of a number of species in a given habitat have attracted ecological research for several decades. Numerous theories have been developed in this context, including the ‘intermediate disturbance hypothesis’ (IDH), but supportive experimental evidence remains scarce and contradictory, leading scientists to propose the existence of an interaction between disturbance and productivity. This study assessed the interactive effects of disturbance and nutrient enrichment at 1 oligotrophic (Arraial do Cabo) and 1 eutrophic (Guanabara Bay) site on the coast of Brazil. At each site, an epibenthic assemblage was allowed to establish on settlement panels (PVC) for 3 mo prior to a 6 mo manipulation phase comprising nutrient enrichment and disturbance (biomass removal). Our results revealed site-specific diversity-driving processes in the absence of disturbance. Nevertheless, diversity and species richness peaked at both sites at some intermediate level of disturbance, corroborating the IDH. Nutrient enrichment increased total species richness and algal species richness in particular, but only at the oligotrophic site. Only here, did nutrient enrichment eliminate the unimodal species richness pattern observed along the disturbance gradient under ambient nutrient concentrations. Such interactive effects of disturbance and productivity on diversity confirm the general predictions of advanced IDH models, e.g. the Kondoh model. The present study indicates that interactive effects of ‘bottom-up’ and ‘top-down’ processes may explain more of the variation in community diversity than the separate models of disturbance–diversity and productivity–diversity relationships.

Description: Sea turtles are diving ectotherms that are influenced by the temperature of the ambient water, although swimming activity can temper this influence via increased body temperatures enhanced by the thermal inertia of these large animals. We successfully equipped 3 nesting hawksbill turtles Eretmochelys imbricata with time–depth recorders (TDRs) to monitor water temperature and dive depth over the duration of the re-migration interval between 2 successive nesting seasons. Data sets for up to 22 mo were obtained, showing fluctuations in water temperature over the seasons. Nocturnal dive behaviour of the turtles at their foraging grounds revealed an increase in dive duration with decreasing water temperatures in winter. A model is provided to estimate dive duration for the range of temperatures experienced by this species in the wild. The data on vertical velocity during ascent and descent phases as a parameter for activity failed to show thermal dependence. It is concluded that changes in water temperature have an effect on the behavioural ecology of Hawksbill Turtles.

Description: Diatoms are photosynthetic secondary endosymbionts found throughout marine and freshwater environments, and are believed to be responsible for around one-fifth of the primary productivity on Earth1, 2. The genome sequence of the marine centric diatom Thalassiosira pseudonana was recently reported, revealing a wealth of information about diatom biology3, 4, 5. Here we report the complete genome sequence of the pennate diatom Phaeodactylum tricornutum and compare it with that of T. pseudonana to clarify evolutionary origins, functional significance and ubiquity of these features throughout diatoms. In spite of the fact that the pennate and centric lineages have only been diverging for 90 million years, their genome structures are dramatically different and a substantial fraction of genes (approx40%) are not shared by these representatives of the two lineages. Analysis of molecular divergence compared with yeasts and metazoans reveals rapid rates of gene diversification in diatoms. Contributing factors include selective gene family expansions, differential losses and gains of genes and introns, and differential mobilization of transposable elements. Most significantly, we document the presence of hundreds of genes from bacteria. More than 300 of these gene transfers are found in both diatoms, attesting to their ancient origins, and many are likely to provide novel possibilities for metabolite management and for perception of environmental signals. These findings go a long way towards explaining the incredible diversity and success of the diatoms in contemporary oceans.

Description: The tectonically driven closure of tropical seaways during the Pliocene epoch (approx5–2 million years (Myr) ago) altered ocean circulation and affected the evolution of climate. Plate tectonic reconstructions show that the main reorganization of one such seaway, the Indonesian Gateway, occurred between 4 and 3 Myr ago. Model simulations have suggested that this would have triggered a switch in the source of waters feeding the Indonesian throughflow into the Indian Ocean, from the warm salty waters of the South Pacific Ocean to the cool and relatively fresh waters of the North Pacific Ocean. Here we use paired measurements of the delta18O and Mg/Ca ratios of planktonic foraminifera to reconstruct the thermal structure of the eastern tropical Indian Ocean from 5.5 to 2 Myr ago. We find that sea surface conditions remained relatively stable throughout the interval, whereas subsurface waters freshened and cooled by about 4 °C between 3.5 and 2.95 Myr ago. We suggest that the restriction of the Indonesian Gateway led to the cooling and shoaling of the thermocline in the tropical Indian Ocean. We conclude that this tectonic reorganization contributed to the global shoaling of the thermocline recorded during the Pliocene epoch, possibly contributing to the development of the equatorial eastern Pacific cold tongue.

Description: Latitudinal clines in species diversity in limnic and terrestrial habitats have been noted for well over a century and are consistent across many taxonomic groups. However, studies in marine systems over the past 2 to 3 decades have yielded equivocal results. We conducted initial analyses of the MarBEF (EU Network of Excellence for Marine Biodiversity and Ecosystem Function) database to test for trends in local and regional diversity over the latitudinal extent of European continental-shelf waters (36° to 81°N). Soft-sediment benthic macrofauna exhibit little evidence of a latitudinal cline in local (α-) diversity measures. Relationships with water depth were relatively strong and complex. Statistically significant latitudinal trends were small and positive, suggesting a modest increase in diversity with latitude once water-depth covariates were removed. These results are consistent regardless of whether subsets of the database were used, replicates were pooled, or component taxonomical groups were evaluated separately. Local and regional diversity measures were significantly and positively correlated. Scientific cooperation through data-sharing is a powerful tool with which to address fundamental ecological and evolutionary questions relating to large-scale patterns and processes.

Description: Oceanic fixed-nitrogen concentrations are controlled by the balance between nitrogen fixation and denitrification. A number of factors, including iron limitation, can restrict nitrogen fixation, introducing the potential for decoupling of nitrogen inputs and losses. Such decoupling could significantly affect the oceanic fixed-nitrogen inventory and consequently the biological component of ocean carbon storage and hence air–sea partitioning of carbon dioxide. However, the extent to which nutrients limit nitrogen fixation in the global ocean is uncertain. Here, we examined rates of nitrogen fixation and nutrient concentrations in the surface waters of the Atlantic Ocean along a north–south 10,000 km transect during October and November 2005. We show that rates of nitrogen fixation were markedly higher in the North Atlantic compared with the South Atlantic Ocean. Across the two basins, nitrogen fixation was positively correlated with dissolved iron and negatively correlated with dissolved phosphorus concentrations. We conclude that inter-basin differences in nitrogen fixation are controlled by iron supply rather than phosphorus availability. Analysis of the nutrient content of deep waters suggests that the fixed nitrogen enters North Atlantic Deep Water. Our study thus supports the suggestion that iron significantly influences nitrogen fixation5, and that subsequent interactions with ocean circulation patterns contribute to the decoupling of nitrogen fixation and loss.

Description: General concepts of reproductive traits in pelagic marine copepods have been developed largely without data from the microcopepod family Oncaeidae. For a very abundant oncaeid species in the Red Sea, Oncaea bispinosa Böttger-Schnack, reproductive parameters are provided and used for testing how the copepod family Oncaeidae may fit into these concepts. Total number and vertical distribution of eggs of this species have been calculated for populations in the northernmost Red Sea and the Gulf of Aqaba during spring, based on counts of detached egg sacs retained in fine mesh net samples. Reproduction is indicated to take place in the meso- and bathypelagic zones, with maximum abundances of eggs occurring within the deep population centres of females at 250 to 450 m depth. The epipelagic population appeared to be non-reproductive. By calculating the biomass of the eggs and the females using published data on size/weight relationships, a first estimate of the reproductive potential of O. bispinosa was obtained and compared with various other oncaeid species. The presently available data for Oncaeidae in total suggest a relationship between single egg (Ec) and female (Fc) carbon weight (Ec = 0.012 × Fc0.48) that differs from corresponding regressions reported in the literature for other marine pelagic copepods. In addition, regressions are given for minimum and maximum clutch carbon related to female carbon weight. Potential egg production rates of O. bispinosa have been calculated from the observed fractions of egg-bearing females and published data on egg developmental times, as available for larger oncaeids. These production rates appear to be lower than have been observed in experimental studies for different pelagic microcopepod taxa. Remaining uncertainties in generalizing concepts for the scaling of fecundity in pelagic marine copepods are discussed, and the need for more comparable data, especially for the numerically abundant oncaeids, is emphasized.

Description: This study examines whether or not biogeographical and/or managerial divisions across the European seas can be validated using soft-bottom macrobenthic community data. The faunal groups used were: all macrobenthos groups, polychaetes, molluscs, crustaceans, echinoderms, sipunculans and the last 5 groups combined. In order to test the discriminating power of these groups, 3 criteria were used: (1) proximity, which refers to the expected closer faunal resemblance of adjacent areas relative to more distant ones; (2) randomness, which in the present context is a measure of the degree to which the inventories of the various sectors, provinces or regions may in each case be considered as a random sample of the inventory of the next largest province or region in a hierarchy of geographic scales; and (3) differentiation, which provides a measure of the uniqueness of the pattern. Results show that only polychaetes fulfill all 3 criteria and that the only marine biogeographic system supported by the analyses is the one proposed by Longhurst (1998). Energy fluxes and other interactions between the planktonic and benthic domains, acting over evolutionary time scales, can be associated with the multivariate pattern derived from the macrobenthos datasets. Third-stage multidimensional scaling ordination reveals that polychaetes produce a unique pattern when all systems are under consideration. Average island distance from the nearest coast, number of islands and the island surface area were the geographic variables best correlated with the community patterns produced by polychaetes. Biogeographic patterns suggest a vicariance model dominating over the founder-dispersal model except for the semi-closed regional seas, where a model substantially modified from the second option could be supported.

Description: Weight-specific growth rate (G) and growth performance (the fraction of maximum growth realized, G pf) are key demographic characteristics. The ratio of RNA/DNA (RD) can provide information on both G and G pf. Estimating G from RD in larval fish requires an adjustment for the activity of RNA at different temperatures. Based on a meta-analysis of published data, we present a general model for the relationship between G in marine fish larvae and fluorometrically derived RD and temperature (T), and suggest that this model can be used to estimate G in marine fish larvae. Several options for estimating G pf are also considered, including the use of a reference growth rate (Gref). RDs of well-fed larvae appeared to be independent of water temperatures between 4 and 28°C, suggesting that any increase in growth rate with temperature was accomplished by increased activity rather than increased concentrations of RNA. However, for the best-fit meta-analysis RD–T–G model, the relationship between RD and G pf was temperature dependent for fish less than fully fed.

Description: The present study quantifies the spatial heterogeneity of the environmental conditions associated with successful spawning by cod Gadus morhua in the Bornholm Basin. Quarterly means from 1989 to 2003 of the thickness of reproductive volume that enabled egg survival indicate that most favourable spawning conditions were located in the central area, inside the 80 m isobath. On average, spatial patterns were similar in the second and third quarters, but with overall lower thicknesses of reproductive volume and less horizontal extension of conditions suitable for egg survival in the third quarter. The observed basin-wide variation in thickness of reproductive volume and oxygen content inside this volume can result in marked horizontal differences in oxygen-related egg mortality, especially during stagnation years. The spawning habitat selected by adult Baltic cod in the Bornholm Basin was characterised by comparing data on egg abundance with environmental variables measured concurrently with egg collection. A clear preference for spawning at locations in the deep basin is evident after both inflow events, as well as for stagnation periods. In consequence, the closed area for fishing implemented in the Bornholm Basin during the main spawning periods from 1995 to 2003, although located in the northern centre of the basin, did not necessarily ensure undisturbed spawning in stagnation years.

Description: Observations show a significant intensification of the Southern Hemisphere westerlies, the prevailing winds between the latitudes of 30° and 60° S, over the past decades. A continuation of this intensification trend is projected by climate scenarios for the twenty-first century. The response of the Antarctic Circumpolar Current and the carbon sink in the Southern Ocean to changes in wind stress and surface buoyancy fluxes is under debate. Here we analyse the Argo network of profiling floats and historical oceanographic data to detect coherent hemispheric-scale warming and freshening trends that extend to depths of more than 1,000 m. The warming and freshening is partly related to changes in the properties of the water masses that make up the Antarctic Circumpolar Current, which are consistent with the anthropogenic changes in heat and freshwater fluxes suggested by climate models. However, we detect no increase in the tilt of the surfaces of equal density across the Antarctic Circumpolar Current, in contrast to coarse-resolution model studies. Our results imply that the transport in the Antarctic Circumpolar Current and meridional overturning in the Southern Ocean are insensitive to decadal changes in wind stress.

Description: A subtropical front was observed in the area south and southeast of the Azores during cruises of FS Meteor and FS Poseidon in early 1982. The front has a basically west–east extension, with considerable meandering observed. Meso-scale eddies are found on both sides. The overall flow pattern corresponds to earlier results on geopotential differences in the upper northeast Atlantic, but the baroclinic transport of the order of 107 m3 s−1 is found to be concentrated in a 60-km wide jet. We suggest here that the current band is part of the gyre circulation, resulting from a branching of the North Atlantic Current.

Description: The Redfield N:C ratio is a fundamental quantity in marine biogeochemistry because it is a key determinant of the efficiency of the biological carbon pump, yet no convincing explanations have been put forward for its remarkable constancy over much of the world ocean. Phytoplankton growth models have so far been unable to account for the different relationships between growth rate and N:C ratio under nutrient and light limitation, and have not been able to predict the Redfield N:C ratio. A relatively simple model of coupled chlorophyll and nutrient dynamics is developed from the premise that phytoplankton maximize growth by optimally allocating nutrient and energy resources among com- peting metabolic requirements for nutrient uptake, light-harvesting, and growth. The model reconciles nutrient and light limitation and appears valid under both balanced and non-balanced growth condi- tions. The Redfield N:C ratio and its constancy are explained as a result of evolutionary pressure towards maximizing light-limited growth rates in relatively carbon-rich oceanic waters.

Description: We monitored the dynamics of extracellular organic matter in 3 mesocosms: one dominated by a heterotrophic (microbial) community with negligible autotrophic activity (net heterotrophic system), a second where a small Phaeocystis bloom developed (production and loss almost balanced), and a third harboring a large diatom bloom (net autotrophic system). In all mesocosms, meso- and macroscopic heterotrophic organisms were excluded to primarily study extracellular organic matter production and turnover by specific algae and microbial loop organisms, respectively. Concentration and composition of dissolved organic matter (DOM), i.e. dissolved organic carbon (DOC), monosaccharides and total carbohydrates (MCHO and TCHO), free and combined neutral carbohydrates (DFCHO and DCCHO), as well as free and combined amino acids (DFAA and DCAA) were measured. In addition, net and gross community production rates were determined to calculate C-budgets. Whereas concentrations and composition of MCHO differed very little among the 3 mesocosms, dynamics of TCHO, DFCHO, and DCCHO differed significantly. Concentrations of DFAA were higher in both algal mesocosms compared to the heterotrophic system, and composition of DFAA was significantly different in the Phaeocystis and Diatom tanks. The composition and concentration of DCAA, however, were similar in all 3 mesocosms. Total dissolved carbohydrates and amino acids comprised a substantial fraction of the DOC pool. Dynamics of these DOC fractions, however, could only partly explain those of DOC, implying either that other dissolved compounds were important for overall C-cycling, or that microbial degradation of DOM affects the detection of carbohydrates and protein components.

Description: The effect of phytoplankton on the other compartments of a simple microbial loop consisting of dissolved matter, bacteria and nanoflagellates was investigated in three 1000 l mesocosms. These mesocosms were inoculated with a natural bacterial community and (1) no other additions (No Addition tank), (2) Phaeocystis globosa (Phaeocystis tank), or (3) 2 diatom species (Diatom tank). During the 20 d experiment, autotrophic activity was negligible in the No Addition tank. In contrast a small P. globosa bloom developed in the Phaeocystis tank and a large diatom bloom dominated the Diatom tank. In this paper we describe the experiment, the changes in chlorophyll a and heterotrophic nanoflagellate concentrations, as well as the cycling of nitrogen, phosphorus, and silica. Then we provide a synthesis of the structure and functioning of the microbial loops in these 3 systems using cluster analysis, a statistical pattern recognition tool. The goal was to test the hypothesis that differences in the resident phytoplankton populations would be reflected in (1) the composition and concentration of dissolved organic matter, (2) the composition of the bacterial community, (3) the food web, and (4) the cycling of elements and organic matter. In all 3 mesocosms, nitrate and silicic acid remained abundant. Orthophosphate was preferred by diatoms, whereas Phaeocystis appeared to prefer dissolved organic phosphorus. The hypothesis that phytoplankton composition shapes the structure and functioning of the microbial loop was partially supported: 6 d after inoculation each mesocosm exhibited a distinct organic matter signature. After 10 to 12 d, concentrations of heterotrophic nanoflagellates were high enough to exert significant grazing pressure in all 3 mesocosms. A parallel shift in bacterial community composition was visible in all mesocosms at this time, possibly reflecting grazing pressure. The food-web structure developed divergently in the 3 mesocosms during the second half of the experiment. Differences in biochemical cycling between mesocosms were predominantly driven by the large quantitative differences in autotrophs.

Description: Submarine mud volcanism represents an important. pathway for methane from deeper reservoirs to the surface, where it enters the benthic carbon cycle. To quantify overall methane release from the Captain Arutyunov mud volcano (CAMV) and to assess the contribution of macrobenthic seep organisms to the regulation of the benthic methane flux, we linked water column methane concentrations, seabed methane emission and pore water geochemistry to the spatial distribution of seep biota. Prominent organisms of the CAMV seep biota were 3 different species of frenulate tubeworms. Seabed methane emission ranged from 0.001 to 0.66 mmol m(-2) d(-1). Dense patches of tubeworms were associated with the lowest seabed methane emission. Elevated methane emission was associated with a sporadic distribution of tubeworms and the occurrence of numerous mud clasts. Despite the presence of a large subsurface methane reservoir, the estimated total methane release from CAMV was low (0.006 x 10(6) mol yr(-1)). In addition to direct methane consumption by Siboglinum poseidoni, the tubeworms likely contribute to the retention of methane carbon in the sediment by affecting bacterial communities in the proximity of the tubes. The siboglinids create new meso-scale habitats on the sediment Surface, increasing habitat heterogeneity and introducing niches for bacterial communities.

Description: Caboxamycin, a new benzoxazole antibiotic, was detected by HPLC-diode array screening in extracts of the marine strain Streptomyces sp. NTK 937, which was isolated from deep-sea sediment collected in the Canary Basin. The structure of caboxamycin was determined by mass spectrometry, NMR experiments and X-ray analysis. It showed inhibitory activity against Gram-positive bacteria, selected human tumor cell lines and the enzyme phosphodiesterase.

Description: Silver scabbard fish Lepidopus caudatus (Euphrasen, 1788) (Trichiuridae) from the Great Meteor Seamount (GMS) in the central eastern Atlantic were studied for diet composition and metazoan parasites. A total of 36 specimens with lengths between 39.1 and 52.2 cm were sampled, which had taken 14 different prey items belonging to 4 major taxonomic groups (Chaetognatha, Crustacea, Mollusca and Teleostei). The most abundant prey organisms were Myctophidae and Euphausiacea, followed by Copepoda (Calanoida), Decapoda, Chaetognatha and Cephalopoda. Fishes were also the dominant prey in terms of biomass. Cannibalism was observed in 7 specimens of subadult L. caudatus. A total of 11 parasite species were identified in/on L. caudatus. We established 9 new host and 8 new locality records. Infestation rates were congruent with diet composition, indicating that parasites were ingested via mesopelagic prey organisms serving as intermediate hosts. The rich parasite fauna in L. caudatus reflects a high diversity of mesopelagic species at the GMS, providing niches for parasites and their intermediate hosts. While several species such as Paradiplectanotrema lepidopi (Monogenea) and Nybelinia lingualis (Cestoda) are typical parasites of L. caudatus, other species such as Sphyriocephalus tergestinus (Cestoda), Anisakis simplex (Nematoda) and Bolbosoma vasculosum (Acanthocephala) seem to be transferred by hosts migrating into the area, indicating an important role of the GMS in the transoceanic distribution patterns of such parasites

Description: Circumpolar surface waters dominate the circulation of the Southern Ocean and sustain one of the ocean's largest standing stocks of biomass thereby producing a significant output of biogenic components, mainly diatoms, to the bottom sediments. Generally transit of biogenic matter from the sea surface to the sea floor affects nutrient regeneration fuels benthic life and transfers signals to the sediment record1–5. Reliable quantification of the relationship between biological production, fractionation of skeletal and tissue components and bottom sediment accumulation depends on direct vertical flux measurements from sediment trap deployments6–9, which have proved to be most scientifically productive10–13. We now present data on vertical mass fluxes from the Southern Ocean and evidence for strong biogeochemical fractionation between organic carbon-, nitrogen- and phosphorus-containing compounds, siliceous and calcareous skeletal remains, and refractory aluminosilicates.

Description: Analysis of aeolo-marine dust deposits in the subtropical eastern Atlantic enables the strength of the major wind patterns during the late Quaternary to be evaluated and gives an insight into the climate of North Africa.

Description: Gombapyrones A–D, new members of the α-pyrone family of secondary metabolites, were produced by Streptomyces griseoruber Acta 3662, which was isolated from bamboo tree rhizosphere. The strain was characterized by its morphological and chemotaxonomical features and by 16S rDNA sequencing as S. griseobuber. The gombapyrone structures were determined by mass spectrometry and by NMR experiments, and were found to have an inhibitory activity against protein tyrosine phosphatase 1B and glycogen synthase kinase 3β.

Description: In a mesocosm experiment in Kiel Fjord, the plankton community 〈250 µm was exposed to a mesozooplankton density gradient (5 to 80 individuals l–1) dominated by the calanoid copepod Acartia clausi. Over the experimental period (9 d), the diazotrophic cyanobacterium Nodularia spumigena increased exponentially, irrespective of mesozooplankton densities, attaining maximum concentrations of 1200 cells ml–1 (3700 filaments l–1). At the end of the experiment, the δ15N of particulate organic matter was negatively correlated with N. spumigena concentrations, indicating the fixation of isotopically ‘light’, diazotrophic nitrogen. In all treatments, final copepod δ15N were lower (–0.7 to –2.7‰) than initial copepod δ15N, indicating the transfer of diazotrophic nitrogen to mesozooplankton. Based on a simple isotopic mixing model, diazotrophic nitrogen was calculated to contribute 45 to 6% to final copepod δ15N along the mesozooplankton gradient. This translates to a transfer of 2 to 24% of net nitrogen fixation to the mesozooplankton standing stock. The absence of any mesozooplankton impact on N. spumigena, and the negative impact found for other microplankton, including diatoms and ciliates, suggest that diazotrophically fixed nitrogen reached mesozooplankton indirectly through trophic vectors. This is consistent with the fact that copepod δ15N decreased with decreasing mesozooplankton densities, since only a quantitatively limited dietary source may be expected to result in density-dependent changes in copepod δ15N. Considering that natural mesozooplankton densities in the Baltic Sea rarely exceed 10 ind. l–1, the contribution of diazotrophically fixed nitrogen to mesozooplankton may be substantial (23 to 45%) during summer blooms of diazotrophic cyanobacteria.

Description: Rising levels of atmospheric carbon dioxide lead to acidification of the oceans. A site in the Mediterranean, naturally carbonated by under-sea volcanoes, provides clues to the possible effects on marine ecosystems.

Description: Epibacterial communities on thalli of the algal species Fucus serratus, Fucus vesiculosus, Laminaria saccharina, Ulva compressa, Delesseria sanguinea and Phycodrys rubens were analysed using 16S ribosomal RNA gene-based DGGE. Individuals of all species were collected in the Kiel Fjord (Baltic Sea) and in the rocky intertidal of Helgoland (North Sea). DGGE gels as well as cluster and multidimensional scaling analysis based on the DGGE band patterns of the epibacterial community showed significant differences between the epibacterial communities on the investigated algal species both in the Baltic and North Seas. Epibacterial communities differed less between regions than between host species, and were more similar on closely related host species. Results give the first evidence for lineage-specific bacterial associations to algal thalli. Furthermore, the results suggest that these algal species may control their epibiotic bacterial communities.

Description: The family Solemyidae represents ancestral protobranch bivalves with the shallow-water genus Solemya and the deep-sea genus Acharax. All known members of this family host symbiotic sulfur-oxidizing bacteria in their gill filaments. Analysis of 18S rRNA gene sequences of Acharax specimens from methane-seeps off Makran (Pakistan), Java (Indonesia), the Aleutian Trench and off the Oregon, Costa Rica, and Peru margins revealed that Solemya spp. and Acharax spp. are well-separated genetically. This supports the current systematic distinction based on morphological criteria. We found 2 clearly distinct clusters within the genus Acharax, with specimens from the Makran, Oregon and Peru (MOP) margins in one (MOP–Acharax) cluster, and those from Java, the Aleutian Trench and Costa Rica (JAC) in the other (JAC–Acharax) cluster. The separation of MOP– and JAC–Acharax clusters from each other and from Solemya (S. reidi and S. velum) is well-supported by phylogenetic calculations employing maximum likelihood and maximum parsimony. Compared to genetic distances among other protobranch groups, distances between the MOP– and JAC–Acharax clusters would justify the affiliation of these clusters to separate species. This implies that species differentiation in Acharax based on shell morphology is likely to underestimate true species diversity within this taxon. Furthermore, our results support the hypothesis that genetic separation of Solemya and Acharax is congruent with the phylogeny of their bacterial endosymbionts.

Description: We used data collected at 〉 60 stations over a 10 yr period to build the carbon budget of the plankton community in the euphotic layer of the Eastern North Atlantic Subtropical Gyre (NASE). Autotrophic biomass exceeded microbial heterotrophic biomass by a factor of 1.7. Mean ( SE), integrated chlorophyll a concentration and net particulate primary production (PP) were 17 +/- 1 Mg m(2) and 271 +/- 29 mg C m(-2) d(-1), respectively. Protist grazing on phytoplankton represented 〉 90% of PP. Bacterial production (BP) was 17 +/- 3 mg C m(-2) d(-1). In vitro O-2-evolution experiments indicated that net community production was -65 +/- 16 mmolO(2) m(-2) d(-1), while community respiration (CR) averaged 124 +/- 13 mmolO(2) m(-2) d-1, equivalent to 1324 +/- 142 mg C m(-2) d(-1). However, the sum of the respiration rates by each microbial group, estimated from their biomass and metabolic rates, ranged from 402 to 848 Mg C m(-2) d-1. Therefore, CR could not be reconciled with the respiratory fluxes sustained by each microbial group. Comparison between estimated gross photosynthesis by phytoplankton (481 to 616 mg C m(-2) d-1) and the sum of respiration by each group suggests that the microbial community in the NASE province is close to metabolic balance, which would agree with the observed O-2 supersaturation in the euphotic layer. Taking into account the mean open-ocean values for PP, BP, CR and bacterial growth efficiency, we show that bacteria account for approximately 20% of CR. Our results suggest that the view that bacteria dominate carbon cycling in the unproductive ocean must be reconsidered, or else that in vitro incubations misrepresent the real metabolic rates of one or several microbial groups.

Description: This study explores the date of first otolith increment formation in Baltic sprat Sprattus sprattus and relates the onset of maturity at Age 1 to the larval traits that are tied to the formation of the first increment. From the otolith microstructure analyses in larvae we found that regular deposition of increments is closely related to larval length, the first clear increment being identified at 16 mm length. Otolith distance from the centre to the first clear increment was independent of temperature, whereas the width of subsequent regular increments increased with increasing temperatures. These results are interpreted in the context of the interaction of larval length, somatic growth and environmental temperature. The date of first increment formation was further estimated in mature and immature Age 1 sprat caught from 1998 to 2000 using a technique that we developed, based on the effect of temperature on larval-stage otolith microstructure after first increment formation. The overall result was that larvae that reach the length of 16 mm early (late) in the season in warm years are more (less) likely to mature the following year. In cold years, like 1998, the probability of maturating at Age 1 was independent of the date at which larvae became 16 mm long, and other processes such as juvenile growth rates, feeding conditions and year-class abundance are suggested as factors that may influence the onset of maturity.

Description: This study deals with large spatial scale differences in the ratios between bacterial leucine incorporation (TLi: protein synthesis) and thymidine incorporation (TTi: DNA synthesis) in oligotrophic offshore and comparatively more mesotrophic inshore (sub)tropical regions of the Atlantic Ocean. Observations were derived from 2 RV ‘Polarstern’ cruises, one of which traversed a meridional mid-ocean transect while the other followed the African coast line. Average values (from 42°N to 35°S) of TLi, TTi and chlorophyll a (chl a) concentration were 40.3 pmol leucine l–1 h–1, 1.32 pmol thymidine l–1 h–1 and 0.18 µg chl a l–1 along the offshore transect, compared to 51.8 pmol leucine l–1 h–1, 2.72 pmol thymidine l–1 h–1 and 0.29 µg chl a l–1 along the inshore transect. Mean values of the TLi:TTi ratio (which defines bacterial growth characteristics) were 32.4 in offshore waters and 20.5 in inshore waters. Offshore ratios of TLi:chl a or TTi:chl a (proxy for bacterial substrate) were 274.1 and 8.5, compared to inshore ratios of 198.7 and 10.0, respectively. This means that, per unit of chl a, considerably higher bacterial protein synthesis was supported in water farther from the coast than near the coast, whereas bacterial DNA synthesis per unit chl a was slightly higher in the latter. Because temperature variability along the cruise tracts was rather similar (except in the Benguela upwelling region), we assume that substrate supply was mainly responsible for the observed significant differences in bacterial growth characteristics. In addition, the potential different contributions of picocyanobacteria to leucine uptake (TLi) must be considered. We conclude that the different TLi:TTi ratios in (sub)tropical offshore and inshore waters reflect reactions of the relevant bacterial communities to prevailing environmental conditions. Therefore, we did not interpret our results in the context of the currently used terms ‘balanced’ or ‘unbalanced’ growth. Bacterial community growth may be balanced in both regions of study, but at different levels of the TLi:TTi ratio.

Description: Subduction zones are often characterized by wedge-shaped sedimentary complexes—called accretionary prisms—that form when sediments are scraped off the subducting plate and added to the overriding plate. Large, landward-dipping thrust faults can cut through such a prism: these faults, known as 'megasplay faults'1, 2, originate near the top of the subducting plate and terminate at the shallow, landward edge of the prism1, 3, 4, 5, 6. Megasplay faults have been the subject of numerous geological and geophysical studies4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, but their initiation and evolution through time remains poorly constrained. Here we combine seismic reflection data from the Nankai accretionary wedge with geological data collected by the Integrated Ocean Drilling Program (IODP) and find that the splay fault cutting this wedge initiated approx1.95 Million years (Myr) ago in the lower part of the prism as an out-of-sequence thrust (OOST). After an initial phase of high activity, the movement along the fault slowed down, but uplift and reactivation of the fault resumed about 1.55 Myr ago. The alternating periods of high and low activity along the splay fault that we document hint at episodic changes in the mechanical stability of accretionary prisms.

Description: The response of the phytoplankton and bacterial spring succession to the predicted warming of sea surface temperature in temperate climate zones during winter was studied using an indoor-mesocosm approach. The mesocosms were filled with winter water from the Kiel Fjord, Baltic Sea. Two of them were started at ~2°C and the temperature was subsequently increased according to the decadal temperature profile of the fjord (ΔT 0°C, baseline treatment). The other mesocosms were run at 3 elevated temperatures with differences of ΔT +2, +4 and +6°C. All mesocosms were exposed to the same light conditions. Timing of peak phytoplankton primary production (PP) during the experimental spring bloom was not significantly influenced by increasing temperatures, whereas the peak of bacterial secondary production (BSP) was accelerated by about 2 d per °C. This suggests that, in case of warming, the spring peak of bacterial degradation of organic matter (in terms of BSP) would occur earlier in the year. Furthermore, the lag time between the peaks of PP and BSP (about 16 d for ΔT 0°C) would diminish progressively at elevated temperatures. The average ratio between BSP and PP increased significantly from 0.37 in the coldest mesocosms to 0.63 in the warmest ones. Community respiration and the contribution of picoplankton (〈3 µm fraction) to this also increased at elevated temperatures. Our results lead to the prediction that climate warming during the winter/ early spring in temperate climate zones will favor bacterial degradation of organic matter by tightening the coupling between phytoplankton and bacteria. However, if PP is reduced by warming, as in our experiments, this will not necessarily lead to increased recycling of organic matter (and CO2).

Description: The ecological niche of nitrate-storing Beggiatoa, and their contribution to the removal of sulfide were investigated in coastal sediment. With microsensors a clear suboxic zone of 2-10cm thick was identified, where neither oxygen nor free sulfide was detectable. In this zone most of the Beggiatoa were found, where they oxidize sulfide with internally stored nitrate. The sulfide input into the suboxic zone was dominated by an upward sulfide flux from deeper sediment, whereas the local production in the suboxic zone was much smaller. Despite their abundance, the calculated sulfide-oxidizing capacity of the Beggiatoa could account for only a small fraction of the total sulfide removal in the sediment. Consequently, most of the sulfide flux into the suboxic layer must have been removed by chemical processes, mainly by precipitation with Fe2+ and oxidation by Fe(III), which was coupled with a pH increase. The free Fe2+ diffusing upwards was oxidized by Mn(IV), resulting in a strong pH decrease. The nitrate storage capacity allows Beggiatoa to migrate randomly up and down in anoxic sediments with an accumulated gliding distance of 4m before running out of nitrate. We propose that the steep sulfide gradient and corresponding high sulfide flux, a typical characteristic of Beggiatoa habitats, is not needed for their metabolic performance, but rather used as a chemotactic cue by the highly motile filaments to avoid getting lost at depth in the sediment. Indeed sulfide is a repellant for Beggiatoa.

Description: The extraordinary molecular phylogenetic diversity of picoeukaryotes and their contributions to marine processes have been highlighted recently. Herein, picoeukaryotic diversity in the coastal Pacific Ocean is characterized for the first time. Close to full length small subunit ribosomal RNA (ssu rRNA) gene amplicons were cloned and sequenced from size fractionated samples (〈 2 μm) taken between September 2000 and October 2001. Sequences belonging to the order Mamiellales were abundant, with Micromonas pusilla-like sequences in all 5 libraries (4 operational taxonomic units, OTUs, at ≥99 sequence similarity), Ostreococcus in 4 (1 OTU) and Bathycoccus in 2 (1 OTU). Phylogenetic reconstruction showed distinct Micromonas clades at this site (although not for other Mamiellales), supporting the idea that the designation M. pusilla harbors cryptic species. In combination with picophytoplankton dynamics previously reported for the same period, the data indicates that picoplanktonic primary production at this site is likely to be dominated by prasinophytes. Furthermore, a Micromonas-clade with no cultured representatives was identified bearing highest identity to Sargasso Sea shotgun clone sequences. Comparison of the Pacific sequences with the shotgun clones showed Ostreococcus and Micromonas at 1 Sargasso site with elevated chlorophyll (chl) levels, but not at other Sargasso sites. Other Pacific clones were primarily Novel Alveolate Group II, which were highly diverse based on OTU analyses. Novel Alveolate Group I, Ciliophora, Cercozoa-like and stramenopile sequences were also retrieved. Although picoeukaryotic diversity has been characterized in only 1 other Pacific Ocean sample (equatorial Pacific), most stramenopile and alveolate sequences corresponded to previously identified phylogenetic clades from studies conducted in other oceans and for which no cultured representatives exist. © Inter-Research 2006.

Description: As scientists discover more about the genomes of marine microorganisms, new views of their physiology and ecosystem networks are opening up, explain Alexandra Z. Worden and Darcy McRose. "Alien Ocean: Anthropological Voyages in Microbial Seas by Stefan Helmreich University of California Press: 2009. 464 pp."

Description: Large uncertainties remain in the current and future contribution to sea level rise from Antarctica. Climate warming may increase snowfall in the continent’s interior1,2,3, but enhance glacier discharge at the coast where warmer air and ocean temperatures erode the buttressing ice shelves4,5,6,7,8,9,10,11. Here, we use satellite interferometric synthetic-aperture radar observations from 1992 to 2006 covering 85% of Antarctica’s coastline to estimate the total mass flux into the ocean. We compare the mass fluxes from large drainage basin units with interior snow accumulation calculated from a regional atmospheric climate model for 1980 to 2004. In East Antarctica, small glacier losses in Wilkes Land and glacier gains at the mouths of the Filchner and Ross ice shelves combine to a near-zero loss of 4±61 Gt yr−1. In West Antarctica, widespread losses along the Bellingshausen and Amundsen seas increased the ice sheet loss by 59% in 10 years to reach 132±60 Gt yr−1 in 2006. In the Peninsula, losses increased by 140% to reach 60±46 Gt yr−1 in 2006. Losses are concentrated along narrow channels occupied by outlet glaciers and are caused by ongoing and past glacier acceleration. Changes in glacier flow therefore have a significant, if not dominant impact on ice sheet mass balance.

Description: While modern sampling techniques, such as autonomous underwater vehicles, are increasing our knowledge of the fauna beneath Antarctic sea ice of only a few meters in depth, greater sampling difficulties mean that little is known about the marine life underneath Antarctic ice shelves over 100 m thick. In this study, we present underwater images showing the underside of an Antarctic ice shelf covered by aggregated invertebrate communities, most likely cnidarians and isopods. These images, taken at an average depth of 145 m, were obtained with a digital still camera system attached to Weddell seals Leptonychotes weddellii foraging just beneath the ice shelf. Our observations indicate that, similar to the sea floor, ice shelves serve as an important habitat for a remarkable amount of marine invertebrate fauna in Antarctica.

Description: Our understanding of the composition and activities of microbial communities from diverse habitats on our planet has improved enormously during the past decade, spurred on largely by advances in molecular biology. Much of this research has focused on the bacteria, and to a lesser extent on the archaea and viruses, because of the relative ease with which these assemblages can be analyzed and studied genetically. In contrast, single-celled, eukaryotic microbes (the protists) have received much less attention, to the point where one might question if they have somehow been demoted from the position of environmentally important taxa. In this paper, we draw attention to this situation and explore several possible (some admittedly lighthearted) explanations for why these remarkable and diverse microbes have remained largely overlooked in the present era of the microbe. © 2009 International Society for Microbial Ecology All rights reserved.

Description: Statoliths of cephalopods are small, hard calcareous stones which lie within the cartilaginous skulls of octopods, sepioids and teuthoids1. Fossil statoliths, clearly belonging to genera which are alive today, have previously been described from 11 Cenozoic deposits spanning from the Eocene to the Pleistocene in North America2–5. Such statoliths are of particular interest because they provide a means of studying the evolution of living cephalopod groups which have no calcareous shells, including the cosmopolitan and numerous teuthoids and octopods. Here, the first cephalopod statoliths to be recognized in European deposits are described and identified as Loligo sp. They are compared with the North American fossil Loligo species and statoliths removed from the two living Loligo species of Europe.

Description: Basalts from the Reykjanes Ridge contain noble gases delivered from the non-degassed lower mantle by the Iceland plume. These lower mantle gases are thought to be a mixture of planetary and solar components, as would be expected if the Earth accreted from fine silicate particles.