ALBERT

Description: Living coelacanths (Latimeria chalumnae) are normally found only in the western Indian Ocean, where they inhabit submarine caves in the Comores Islands. Two specimens have since been caught off the island of Manado Tua, north Sulawesi, Indonesia, some 10,000 kilometres away. We sought to determine the ecological and geographic distribution of Indonesian coelacanth populations with a view to drawing up conservation measures for this extremely rare fish. During our explorations, we discovered two living Indonesian coelacanths 360 km southwest of Manado Tua.

Description: Acoustic telemetry was used to examine patterns of activity and space utilisation of coelacanths, nocturnal predators which spend the day in submarine caves. Nine coelacanths (Latimeria chalumnae) were tracked, each for a period of 1 to 16 nights at Grande Comore, West Indian Ocean. Activities lasted on average 9 h, usually starting shortly after sunset and ending before sunrise. Vertically, coelacanths moved up and down at and below cave level by following the bottom contour, mainly between 180 and 400 m depth. The deepest record was 698 m, the shallowest 133 m. Most time was spent between 200 and 300 m depth. Large individuals performed deep excursions to depths below 400 m, usually once per night. The fish spent most time in water temperatures of 15 to 19 °C; they rarely ventured into waters warmer than 22 °C measured at depths shallower than 160 m depth. Horizontally, coelacanths stayed in narrow areas ranging from 〈1 to 10 km of coastline. Coelacanths are extremely slow drift-hunters with an estimated average swimming speed of 3.2 m min−1, often travelling not more than 3 km per night. They probably take advantage of local upwelling and downwelling and slow currents occurring parallel to the steep slopes. This study shows that coelacanths are inhabitants of the subphotic zone, where they are active mainly below the depth of their daytime refuges.

Description: The exponentially increasing number of sequenced genomes necessitates fast, accurate, universally applicable and automated approaches for the delineation of prokaryotic species. We developed specI (species identification tool; http://www.bork.embl.de/software/specI/), a method to group organisms into species clusters based on 40 universal, single-copy phylogenetic marker genes. Applied to 3,496 prokaryotic genomes, specI identified 1,753 species clusters. Of 314 discrepancies with a widely used taxonomic classification, 〉62% were resolved by literature support.

Description: This article reports the results of a study of submarine groundwater discharge (SGD) to coastal waters of Majorca (NW Mediterranean). The overall aim is to evaluate the relevance of SGD of the island and chemically characterize the components that are supplied to the coastal waters through this pathway. Although other discharge areas are identified, we particularly focus on SGD in bays and areas of increased sea water residence time where effects of the discharges are expected to be most notable. Analysis at four selected embayments with different land-use characteristics indicated a link between human activities (mainly agriculture and urban) and compounds arriving to the coast. A pathway for these elements is the diffuse discharge along the shoreline, as suggested by the inverse relationship between salinity and nutrients in nearshore porewaters. A general survey was conducted at 46 sites around the island, and used dissolved radium as a qualitative indicator of SGD. Measurements of nutrients (P and N), pCO2 and TOC were performed to characterize the elements delivered to the coastal environment. Most nearshore samples showed 224Ra enrichment (mean ± SE, 7.0 ± 0.6 dpm 100 l−1) with respect to offshore waters (1.1 ± 0.2 dpm 100 l−1); however, 224Ra measurements along the coast were highly variable (1.0–38.1 dpm 100 l−1). Coastal samples with enhanced radium levels showed elevated pCO2 with respect to atmospheric concentrations, which together with high pCO2 in groundwater (〉5,000 ppm) indicates that SGD is an important vector of CO2 to coastal waters. Moreover, a relationship between 224Ra and phytoplankton biomass was established, suggesting an important impact of SGD on coastal productivity. The results presented here provide a first approximation of the SGD effect in the coastal waters of Majorca, and indicate that SGD could be an important source of nutrients and CO2 to the coast, strongly influencing the productivity and biogeochemical cycling of the coastal waters of Majorca.

Description: Escalation theory proposes enemy-related selection as the most relevant factor of natural selection among individual organisms. When hazardous to predators, prey might be considered enemies that influence predator evolution. Opisthobranch molluscs that prey on chemically defended prey are an interesting study case on this subject. Predation on chemically defended species paved the way for opisthobranchs to enter in an arms race, developing means to detoxify and/or excrete harmful compounds, which led to the sequestration of those compounds and their self-defensive use, an escalation of defenses. Here we aim to understand whether the opisthobranch predator is better protected than its chemically defended prey, using as predator–prey model, a nudibranch (Hypselodoriscantabrica) and the sponge it preys upon (Dysidea fragilis), and from which it obtains deterrent chemical compounds. Specimens of both species were collected on the Portuguese coast, and their crude extracts were analyzed and used in palatability tests. Nudibranchs revealed a higher natural concentration of crude extract, probably due to a progressive accumulation of the compounds. Both predator and prey extracts revealed similar mixtures of deterrent metabolites (furanosesquiterpenes). Palatability tests revealed a more effective deterrence in the nudibranch extracts because significant rejection rates were observed at lower concentrations than those necessary for the sponge extracts to have the same effect. We concluded that the predator is chemically better protected than its prey, which suggests that its acquisition of chemical defenses reveals a defensive escalation.

Description: The family Rhodobacteraceae can be considered a paradigm of modern taxonomy of prokaryotes. Taking into account the number of species and genera that conforms the family, together with the knowledge about their abundance and vast global distribution, it surprises that most of them have been described relatively recent to our days. Two notable exceptions are Rhodonostoc capsulatum (Molisch, Die purpurbakterien nach neuen untersuchungen, vols i–vii. G. Fischer, Jena, pp 1–95, 1907) and Micrococcus denitrificans Beijerinck and Minkman (Zentbl Bakteriol, Parasitenkd, Infektionskr Hyg. Abt II 25:30–63, 1910), early basonyms of Rhodobacter capsulatus and Paracoccus denitrificans, respectively. The fact that so many descriptions within this family are recent means that some studies have been concomitant and pose a challenge not only for pure taxonomic studies but also for interpreting other studies in which a rapidly evolving nomenclature had to be used anyway. The metabolic and ecological diversity of the group adds further complexity. In spite of all these difficulties, the picture is far from being a chaos and it can be considered an exciting and important bacterial group to study. Rhodobacteraceae are, fundamentally, aquatic bacteria that frequently thrive in marine environments. They comprise mainly aerobic photo- and chemoheterotrophs but also purple non-sulfur bacteria which perform photosynthesis in anaerobic environments. They are deeply involved in sulfur and carbon biogeochemical cycling and symbiosis with aquatic micro- and macroorganisms. One hundred genera are currently recognized as members of the family although the Stappia group, Ahrensia, Agaricicola, and Rhodothalassium do not belong, phylogenetically, to the family. The 90 other genera are distributed in 5 phylogenetic groups (the Rhodobacter, the Paracoccus, the Rhodovulum, the Amaricoccus, and the Roseobacter clades) that might be considered a family on its own.

Description: There have been decades, such as 2000–2009, when the observed globally averaged surface-temperature time series shows little increase or even a slightly negative trend1 (a hiatus period). However, the observed energy imbalance at the top-of-atmosphere for this recent decade indicates that a net energy flux into the climate system of about 1 W m−2 (refs 2, 3) should be producing warming somewhere in the system4,5. Here we analyse twenty-first-century climate-model simulations that maintain a consistent radiative imbalance at the top-of-atmosphere of about 1 W m−2 as observed for the past decade. Eight decades with a slightly negative global mean surface-temperature trend show that the ocean above 300 m takes up significantly less heat whereas the ocean below 300 m takes up significantly more, compared with non-hiatus decades. The model provides a plausible depiction of processes in the climate system causing the hiatus periods, and indicates that a hiatus period is a relatively common climate phenomenon and may be linked to La Niña-like conditions.

Description: Mesozoic deep water sedimentary rocks uplifted and exposed in basement complexes on the islands of Fuerteventura (Canary Islands) and Maio (Cape Verdes) help document the early Atlantic ocean and the volcanic history of these islands. On Fuerteventura ca. 1.5 km of terrigenous quartzose clastics, black shales, and subordinate redeposited limestones of early Cretaceous age are overlain first by Albian-Cenomanian marls and clastics, showing extensive soft sediment slumping, then after a hiatus by Senonian nannofossil chalks with chert nodules. After a further break alkalic submarine volcanic rocks, largely hyaloclastics, were erupted, then overlain by redeposited bioclastic limestones and volcaniclastics of Oligocene age. A dyke complex was intruded, then the basement complex was uplifted, peneplaned, and overlain by Neogene plateau lavas. On Maio the basement complex comprises mafic pillow lavas of midocean ridge character overlain by up to 4 00 m of deep water sedimentary rocks. Upper Jurassic to lower Cretaceous radiolarianrich pelagic limestones are succeeded by middle and upper Cretaceous sequences of mudstones, redeposited limestones, chalks, tuffs, and volcaniclastics which document the onset of volcanism. During a sedimentary hiatus plutonic rocks were intruded, uplifted, then eroded to produce conglomerates of late Miocene age. These are overlain by several series of gently dipping subaerial alkaline basalt flows. Comparisons with D.S.D.P. sites, oil wells and on land geology confirm that the lower Cretaceous Fuerteventura quartzose clastics formed part of a deep water fan complex located close to the Atlantic continent-ocean boundary. Comparable flysch is known in the Moroccan basin, in the Betic-Maghrebide system and the feeding Tan-Tan-Cape Bojador delta system. The inferred disconformity between Cenomanian and Senonian is part of a widespread depositional hiatus associated with slumping on the adjacent west African continental margin. On Maio pelagic limestones comparable with the Tethyan Maiolica facies were deposited on a subsiding? middle/late Jurassic ocean ridge before uplift related to onset of volcanism probably in the late Cretaceous.

Description: Digital terrain models (DTMs), finding a wide range of applications in the exploration of water areas, are mainly created on the basis of bathymetric data from a multibeam echosounder. The estimation of DTM accuracy dependent on the choice of the survey parameters is difficult due to the lack of reference surface. These authors have developed the methodology of simulation called virtual survey, which enables examining how various parameters of the echosounder, survey and DTM construction algorithms affect the errors of the created models. They are aimed at precise estimation of the model accuracy and the optimization of depth measurement work. The article includes the results of the examination of the effect of parameters determining the density of measurement points on the accuracy of the obtained GRID model. It has been proved that a significant reduction of recorded data density leads to only a slight increase in the modeling error, which makes the bathymetric survey much more cost-effective.

Description: During a sea survey session performed using a multibeam echosounder millions of measurement points are generated. Sea surveys should be carried out in such a way, that the maximum accuracy of created seabed models (DTM) is achieved and the standards specified by the IHO S-44 guidelines are met. One of the requirements is so called full sea floor search, which means the ability of a system to detect all the cubic features at least 1 m in size. Spatial distribution of measurement points is irregular and the distances between closest data points are varying, depending on many factors (on survey parameters, depth or distance between the beam and the vessel). Due to those reasons, it is difficult for the users of hydrographic systems to evaluate the degree of coverage of seabed by measurement points, and therefore to confirm fulfilment of the normative requirements. As a solution we propose visualisation methods for measurement data collected in sea surveys. Specific features of such a visualisation are explained and a method for creating the images is presented, along with some exemplary results.

Description: Carbonate precipitates on mounds and along tectonic scarps off the Costa Rica margin are manifestations of subduction-induced dewatering. The long-term dewatering history is recorded in mineralogical, petrological and isotope signals of carbonates recovered from these sites. The carbonates are strongly depleted in δ13C (−11 to −53‰ PDB) and enriched in δ18O (+4 to +8‰ PDB). Thermogenic methane and biogenic methane were identified as sources of the carbon. Chemoherm carbonates and seepage-associated carbonates formed in a focused flow regime have lighter δ13C values, while others formed in a more diffusive flow regime have slightly enriched C isotope values. Three fluid components were inferred based on the calculation of equilibrium δ18O: clay dehydration water, gas hydrate water and seawater. Calculated equilibrium δ18O values of carbonates from different down-core depths as well as from different precipitation stages show that the δ18O of the precipitating fluid is progressively depleted with time. Dolostones showing a methane-C source and a well constrained O-isotope signature are thought to have formed at depth in the sediment and subsequently became exhumed. Glauconitic sandstones cemented by methane-derived carbonate provide evidence that fluid and solid material have been expelled by the mud volcano.

Description: A detailed analysis of beak length to body size and mass measurements was carried out for the glacial squid Psychroteuthis glacialis, which is an endemic cephalopod species in the Southern Ocean. Beak lengths (lower rostral length) were measured from 211 specimens which had been sampled in the Atlantic sector of the Southern Ocean. The basic idea was to find some calibration model in order to inter- or extrapolate missing mantle length and/or wet body mass data by means of beak lengths. The relationships between beak length and mantle length/wet body mass bear essential information for future use in biomass estimates in Southern Ocean top predators, since beaks of P. glacialis occur frequently in the stomach contents of Antarctic seabirds, seals and toothed whales. Therefore, lower rostral lengths were plotted against both mantle length and wet body mass to determine the relationship between these variables. The relationships had limited scatter and very high coefficients of determination, showing that lower rostral length is a good predictor of the squid's mantle length and wet mass. A non-linear 3rd order polynomial regression of lower rostral length against mantle length was identified as the best fitted calibration model, explaining 93% (R 2) of the associated variance. The relationship between lower rostral length and wet body mass was empirically well fitted through regressing ln-transformed values of lower rostral length against wet body mass, explaining 95% (R 2) of the associated variance. The present investigation provides measurements for a wide size range of P. glacialis individuals compared to earlier studies, which were limited on very small data sets.

Description: Based on an empirical orthogonal function analysis of satellite altimeter data, guidance from numerical model results, and CANEK transport estimates, we propose an index, based on differences in satellite-measured sea surface height anomalies, for measuring the influence of Gulf of Mexico Loop Current intrusion on vertically integrated transport variability through the Yucatan Channel. We show that the new index is significantly correlated at low frequencies (cut-off 120 days) with the cable estimates of transport between Florida and the Bahamas. We argue that the physical basis for the correlation is the geometric connectivity between the Yucatan Channel and the Straits of Florida.

Description: Grateloupia turuturu Yamada is an economically valuable red alga with great potential in nutraceuticals and pharmaceuticals. Filaments of G. turuturu are of primary importance in germplasm preservation and sporeling culture, although filaments were not present in its life cycle. In this study, effects of temperature (10, 15, 20, 25, and 30 °C) and irradiance (10, 30, 60, and 90 μmol photons m−2 s−1) with photoperiod 10:14 h (light/dark) on filament development were investigated. Our results indicated that 25 °C was the optimal temperature for the formation of discoid crusts regardless of the irradiance. Conditions of 20 °C and 60 μmol photons m−2 s−1 promoted the development of discoid crusts and formation of upright thalli.

Description: The fields of immunology, microbiology, nutrition and metabolism are rapidly converging. Here we expand on a diet-microbiota model as the basis for the greater incidence of asthma and autoimmunity in developed countries.

Description: The mammalian gastrointestinal tract, the site of digestion and nutrient absorption, harbors trillions of beneficial commensal microbes from all three domains of life. Commensal bacteria, in particular, are key participants in the digestion of food, and are responsible for the extraction and synthesis of nutrients and other metabolites that are essential for the maintenance of mammalian health. Many of these nutrients and metabolites derived from commensal bacteria have been implicated in the development, homeostasis and function of the immune system, suggesting that commensal bacteria may influence host immunity via nutrient- and metabolite-dependent mechanisms. Here we review the current knowledge of how commensal bacteria regulate the production and bioavailability of immunomodulatory, diet-dependent nutrients and metabolites and discuss how these commensal bacteria–derived products may regulate the development and function of the mammalian immune system.

Description: To the Editor: Mass spectrometry–based proteomics has become an important component of biological research. Numerous proteomics methods have been developed to identify and quantify the proteins in biological and clinical samples1, identify pathways affected by endogenous and exogenous perturbations2 and characterize protein complexes3. Despite successes, the interpretation of vast proteomics data…

Description: Objective: Hypersensitivity pneumonitis due to dry sausage mould has been reported in workers who brush off the excess mould which coats dry sausage. Prevalence of symptoms and sensitization to mould among these pork-butchery workers is unknown. The aim of the study was to assess the clinical, radiographic, functional, and immunological features in exposed and non-exposed workers in semi-industrial pork butcheries. Patients and methods: Symptoms, and serum precipitins against mould extracts, were studied in workers in semi-industrial pork butcheries. Of 600 workers asked to participate, 123 (20.5%) were included. Fifty-nine workers, exposed to dry (raw) sausage mould and Penicillium nalgiovense were compared with 64 non-exposed subjects, for symptoms, chest X-rays, spirometry and CO-transfer measurements. Precipitating antibodies were detected by immunoelectrophoresis and electrosyneresis. Results: Sneezing, cough, dyspnoea, nasal obstruction, headache, and discomfort were significantly more frequent in the exposed group at work and after work than in the control group (P 〈 0.05). The prevalence of precipitating antibodies for sausage mould was higher in the exposed group (37%) than in the non-exposed group (9%) (P 〈 0.01). The mean number of precipitating lines measured by electrosyneresis was higher in exposed workers than in non-exposed workers for mould extract (1.09 vs 0.28, P 〈 0.05) and for Penicillium nalgiovense (1.77 vs 0.33, P 〈 0.05). No specific X-ray opacity or lung function impairment was found in either group. Conclusions: Clinical symptoms and sensitization to Penicillium nalgiovense are frequent among workers exposed to mould during brushing in dry sausage plants.

Description: In bacteria, foreign nucleic acids are silenced by clustered, regularly interspaced, short palindromic repeats (CRISPR)--CRISPR-associated (Cas) systems. Bacterial type II CRISPR systems have been adapted to create guide RNAs that direct site-specific DNA cleavage by the Cas9 endonuclease in cultured cells. Here we show that the CRISPR-Cas system functions in vivo to induce targeted genetic modifications in zebrafish embryos with efficiencies similar to those obtained using zinc finger nucleases and transcription activator-like effector nucleases.

Description: The chemical composition (alkalinity, pH, NH4+, PO43-, Si, H2S, Cl-, Ca2+,and SO42-) of interstitial water was studied in the sediments of the Sea of Okhotsk at sites of methane emission. Variations in alkalinity were observed in the sediments from a typical seawater value (2.3 mM/kg) to 63 mM/kg. It is demonstrated that they are caused by the processes of sulfate reduction and methane generation. Based on the balance relationships, an equationwas constructed connecting changes in alkalinity with variations of Ca2+, SO42- and NH4+ in interstitial solutions.

Description: Breaking waves markedly increase the rates of air–sea transfer of momentum, energy and mass. In light to moderate wind conditions, spilling breakers with short wavelengths are observed frequently. Theory and laboratory experiments have shown that, as these waves approach breaking in clean water, a ripple pattern that is dominated by surface tension forms at the crest. Under laboratory conditions and in theory, the transition to turbulent flow is triggered by flow separation under the ripples, typically without leading to overturning of the free surface15. Water surfaces in nature, however, are typically contaminated by surfactant films that alter the surface tension and produce surface elasticity and viscosity16, 17. Here we present the results of laboratory experiments in which spilling breaking waves were generated mechanically in water with a range of surfactant concentrations. We find significant changes in the breaking process owing to surfactants. At the highest concentration of surfactants, a small plunging jet issues from the front face of the wave at a point below the wave crest and entraps a pocket of air on impact with the front face of the wave. The bubbles and turbulence created during this process are likely to increase air–sea transfer.

Description: There has been concern about recent temperature trends and the future effects of CO2 concentrations in the atmosphere1,2; but instrumental records only cover a few decades to a few centuries and it is essential that proxy data sources, such as pollen spectra from peats and lake sediments, be carefully interpreted as climate records. Several workers have shown statistically significant associations between the modern pollen rain and climatic parameters, an approach that by-passes the recognition of pollen/vegetation units. Statistically defined equations that associate abiotic and biotic elements are called transfer functions. We report here on the application of transfer function equations to nine middle and late Holocene peat and lake sediment sequences from northern Canada (Fig. 1).

Description: Stratigraphy is the fundament for the establishment and clarification of numerous questions in geology. The problem of the stratification of fossil sediments played a decisive role in the past, and continues to do so today. If one wishes to gain insight regarding the nature of the formation of today’s deposits, and avoid serious errors in the comparison of the same, one must, of necessity, first concern oneself with the sequence of recent sediment layers.

Description: Hydrothermal vents emit sulphur and metals to the ocean1. Particular attention has been paid to hydrothermal fluxes of iron2–4, a limiting micronutrient of marine primary production5. Vent-derived ironwas previously thought to rapidly oxidize and precipitate around vents6. However, organic matter can bind to and stabilize dissolved and particulate iron in hydrothermal plumes7–9, facilitating its dispersion into the open ocean10. Here, we report measurements of the chemical speciation of sulphide and iron in high-temperature fluids emanating from vents in the East Pacific Rise and the Eastern Lau Spreading Center. We show that pyrite nanoparticles—composed of iron and sulphur—account for up to 10% of the filterable iron (less than 200nm in size) in these fluids. We suggest that these particles form before the discharge of the vent fluid. We estimate that pyrite nanoparticles sink more slowly than larger plume particles, and are more resistant to oxidation than dissolved Fe(II) and FeS.We suggest that the discharge of iron in the form of pyrite nanoparticles increases the probability that vent-derived iron will be transported over long distances in the deep ocean.

Description: The microenvironmental dynamics of the microbial mat of black band disease (BBD) and its less virulent precursor, cyanobacterial patch (CP), were extensively profiled using microsensors under different light intensities with respect to O(2), pH and H(2)S. BBD mats exhibited vertical stratification into an upper phototrophic and lower anoxic and sulphidic zone. At the progression front of BBD lesions, high sulphide levels up to 4977 μM were measured in darkness along with lower than ambient levels of pH (7.43±0.20). At the base of the coral-BBD microbial mat, conditions were hypoxic or anoxic depending on light intensity exposure. In contrast, CP mats did not exhibit strong microchemical stratification with mostly supersaturated oxygen conditions throughout the mats at all light intensities and with levels of pH generally higher than in BBD. Two of three replicate CP mats were devoid of sulphide, while the third replicate showed only low levels of sulphide (up to 42 μM) present in darkness and at intermediate light levels. The level of oxygenation and sulphide correlated well with lesion migration rates, that is virulence of the mats, which were greater in BBD than in CP. The results suggest that biogeochemical microgradients of BBD shaped by the complex microbial community, rather than a defined pathogen, are the major trigger for high virulence and the associated derived coral mortality of this disease.

Description: Organic detritus passing from the sea surface through the water column to the sea floor controls nutrient regeneration, fuels benthic life and affects burial of organic carbon in the sediment record. Particle trap systems have enabled the first quantification of this important process. The results suggest that the dominant mechanism of vertical transport is by rapid settling of rare large particles, most likely of faecal pellets or marine snow of the order of 〉200 μm in diameter, whereas the more frequent small particles have an insignificant role in vertical mass flux4–6. The ultimate source of organic detritus is biological production in surface waters of the oceans. I determine here an empirical relationship that predicts organic carbon flux at any depth in the oceans below the base of the euphotic zone as a function of the mean net primary production rate at the surface and depth-dependent consumption. Such a relationship aids in estimating rates of decay of organic matter in the water column, benthic and water column respiration of oxygen in the deep sea and burial of organic carbon in the sediment record.

Description: Bacterial light production involves enzymes-luciferase, fatty acid reductase, and flavin reductase-and substrates-reduced flavin mononucleotide and long-chain fatty aldehyde-that are specific to bioluminescence in bacteria. The bacterial genes coding for these enzymes, luxA and luxB for the subunits of luciferase; luxC, luxD, and luxE for the components of the fatty acid reductase; and luxG for flavin reductase, are found as an operon in light-emitting bacteria, with the gene order, luxCDABEG. Over 30 species of marine and terrestrial bacteria, which cluster phylogenetically in Aliivibrio, Photobacterium, and Vibrio (Vibrionaceae), Shewanella (Shewanellaceae), and Photorhabdus (Enterobacteriaceae), carry lux operon genes. The luminescence operons of some of these bacteria also contain genes involved in the synthesis of riboflavin, ribEBHA, and in some species, regulatory genes luxI and luxR are associated with the lux operon. In well-studied cases, lux genes are coordinately expressed in a population density-responsive, self-inducing manner called quorum sensing. The evolutionary origins and physiological function of bioluminescence in bacteria are not well understood but are thought to relate to utilization of oxygen as a substrate in the luminescence reaction.

Description: Fertilization depends on distribution and aggregation patterns of sea urchins which influence gamete contact time and may potentially enhance their vulnerability to ocean acidification. In this study, we conducted fertilization experiments to assess the effects of selected pH scenarios on fertilization success of Strongylocentrotus droebachiensis, from Spitsbergen, Arctic. Acidification was achieved by aerating seawater with different CO2 partial pressures to represent pre-industrial and present conditions (measured ~180–425 µatm) and future acidification scenarios (~550–800, ~1,300, ~2,000 µatm). Fertilization success was defined as the proportion of successful/unsuccessful fertilizations per treatment; eggs were classified according to features of their fertilization envelope (FE), hyaline layer (HL) and achievement of cellular division. The diagnostic findings of specific pathological aberrations were described in detail. We additionally measured intracellular pH changes in unfertilized eggs exposed for 1 h to selected acidification treatments using BCECF/AM. We conclude that (a) acidified conditions increase the proportion of eggs that failed fertilization, (b) acidification may increase the risk of polyspermy due to failures in the FE formation supported by the occasional observation of multiple sperms in the perivitelline space and (c) irregular formation of the embryo may arise due to impaired formation of the HL. The decrease in fertilization success could be also related to the observed changes in intracellular pH at pCO2 ~ 1,000 μatm or higher.

Description: Bioturbation of bottom sediments at the sediment–water interface is currently gaining more attention in studies dealing with the functioning of aquatic ecosystems. Such bioturbation can be caused by a variety of benthic macroinvertebrates or benthivorous fish that forage and burrow various bottom tubes, holes and pits. Thus, the processes involved may either be a result of direct interception by benthic animals, e.g., through bioresuspension of particles or through food ingestion and biodeposition, or of other indirect effects, e.g., changes in the physical properties of sediments or through the constructions mentioned above, along with corresponding changes in pond ecosystem functioning. The most distinct effect of benthivorous fish bioturbation activities is an increase in the turbidity of the water, which can lead to many subsequent knock-on effects, including inhibition of phytoplankton and submersed macrophyte growth with resulting alterations in physico-chemical water conditions. The importance of benthic macroinvertebrates and fish in bioturbation processes is also indicated by an increase in the numbers of resting cyanobacterial colonies recruited due to bioturbation of bottom sediments.

Description: The 5th International Workshop on Modeling the Ocean (IWMO http://www.uib.no/en/IWMO2013/-58927/iwmo-2013-bergen-norway) was held in June 17–20, in Bergen, Norway. The historic city of Bergen is the gateway to the fjords and a center for oceanic research. The workshop was hosted by the University of Bergen and also sponsored by the Research Council of Norway. Approximately 80 researchers worldwide participated in the workshop. Professor Mellor, Princeton University, gave the keynote lecture. The 5th IWMO meeting in Bergen was the first IWMO held in Europe, followed on the footsteps of previous meetings, IWMO-2009 in Taipei, Taiwan (Oey et al. 2010a, b), IWMO-2010 in Norfolk, USA (Ezer et al. 2011), IWMO-2011 in Qingdao, China (Oey et al. 2013a), and IWMO-2012 in Yokohama, Japan (Oey et al. 2013b). The participants presented approximately 60 oral talks and 20 posters, covering a wide range of ocean modeling and data analysis topics, as described below. In the spirit of promoting young s ...

Description: The Adula Nappe in the Central Alps is a mixture of various pre-Mesozoic continental basement rocks, metabasics, ultrabasics, and Mesozoic cover rocks, which were pervasively deformed during Alpine orogeny. Metabasics, ultrabasics, and locally garnet–mica schists preserve eclogite-facies assemblages while the bulk of the nappe lacks such evidence. We provide garnet major-element data, Lu profiles, and Lu–Hf garnet geochronology from eclogites sampled along a north–south traverse. A southward increasing Alpine overprint over pre-Alpine garnets is observed throughout the nappe. Garnets in a sample from the northern Adula Nappe display a single growth cycle and yield a Variscan age of 323.8 ± 6.9 Ma. In contrast, a sample from Alpe Arami in the southernmost part contains unzoned garnets that fully equilibrated to Alpine high-pressure (HP) metamorphic conditions with temperatures exceeding 800 °C. We suggest that the respective Eocene Lu–Hf age of 34.1 ± 2.8 Ma is affected by partial re-equilibration after the Alpine pressure peak. A third sample from the central part of the nappe contains separable Alpine and Variscan garnet populations. The Alpine population yields a maximum age of 38.8 ± 4.3 Ma in line with a previously published garnet maximum age from the central nappe of 37.1 ± 0.9 Ma. The Adula Nappe represents a coherent basement unit, which preserves a continuous Alpine high-pressure metamorphic gradient. It was subducted as a whole in a single, short-lived event in the upper Eocene. Controversial HP ages and conditions in the Adula Nappe may result from partly preserved Variscan assemblages in Alpine metamorphic rocks.

Description: Ecosystems and their biodiversity have to be protected and preserved as sources of services and goods. The human population controls and modifies ecosystems to improve its health conditions and welfare. The consequences of human activities should be carefully monitored and ecosystems should be managed to protect all of the species and preserve their functioning. The development of strategies for ecosystem management benefits from the use of computational techniques to model the dynamics of species that interact with their abiotic and biotic environment. Life scientists and computer scientists need to work together to define and analyse ecosystem models. However, there is a multifaceted gap between the approaches used in life science and those used in computer science. Such gap is both cultural and technical, and results in a number of challenges. In this paper we identify these challenges and provide technical and cultural proposals for solving them.

Description: A multidisciplinary analysis of intraplate volcanic complexes interbedded with shallow and deeper marine sediments of a Late Miocene carbonate platform (Iblean Plateau, Sicily) has allowed a detailed paleo-environmental reconstruction. Our approach includes sedimentology, physical volcanology, stratigraphy, geochemistry/mineralogy, paleontology and 40Ar/39Ar dating. Four volcanic complexes are distinguished from each other. Two comprise an eastern shallow water platform (diatreme field and Carlentini complex) and two a western deeper water environment representing a seamount belt on the carbonate ramp (Valle Guffari seamount and Mineo complex). The late Miocene volcanism was not time-equivalent: episodic eruptions took place from the Late Tortonian (ca. 9.38 Ma at Mt. Carrubba) to Early Messinian (ca. 6.46 Ma at Valle Guffari). Explosive volcanism of the diatreme field may be related geodynamically to the period of periodic sea-level oscillations at the onset of the Messinian Salinity Crisis. Marine diatomites preserved in the crater areas of two diatremes are the only remnants of Early Messinian diatomites in the eastern Iblean Mountains.

Description: Meltponds on Arctic sea ice have previously been reported to be devoid of marine metazoans due to fresh-water conditions. The predominantly dark frequently also green and brownish meltponds observed in the Central Arctic in summer 2007 hinted to brackish conditions and considerable amounts of algae, possibly making the habitat suitable for marine metazoans. Environmental conditions in meltponds as well as sympagic meiofauna in new ice covering pond surfaces and in rotten ice on the bottom of ponds were studied, applying modified techniques from sea-ice and under-ice research. Due to the very porous structure of the rotten ice, the meltponds were usually brackish to saline, providing living conditions very similar to sub-ice water. The new ice cover on the surface had similar characteristics as the bottom layer of level ice. The ponds were thus accessible to and inhabitable by metazoans. The new ice cover and the rotten ice were inhabited by various sympagic meiofauna taxa, predominantly ciliates, rotifers, acoels, nematodes and foraminiferans. Also, sympagic amphipods were found on the bottom of meltponds. We suggest that, in consequence of global warming, brackish and saline meltponds are becoming more frequent in the Arctic, providing a new habitat to marine metazoans.

Description: Prey regurgitation during capture is a potential important confounding effect in fish dietary ecology studies as it may lead to overestimation of stomach vacuity and underestimation of prey consumption. This study investigates patterns of prey regurgitation and stomach vacuity among five grouper and three snapper species in shallow water off French Polynesia and tests the effectiveness of piercing swim-bladders after capture as a method to prevent regurgitation. Groupers exhibited a moderate overall regurgitation rate of 15.6% of full stomachs and a high true (i.e., after accounting for regurgitation) stomach vacuity rate of 40.5%. In contrast, snappers showed high regurgitation (mean 31.7%) and low true stomach vacuity (14.6%). Not accounting for regurgitation would have resulted in a moderate overestimation of stomach vacuity in groupers, but an almost 3-fold overestimation in snappers. Swim-bladder decompression by piercing after capture prove a highly effective method to reduce regurgitation (more than 2-fold for groupers and near 8-fold for snappers). This study enables a more general understanding of prey regurgitation in two commercially valuable fish families, thus improving understanding of the dietary ecology of these fishes. This information is particularly important in the context of prey consumption estimates and subsequent estimations of the impact of fish predators on ecosystems.

Description: The temporal variation in the stable carbon and nitrogen isotope ratios of particulate organic matter (POM) in the Rhone River was investigated on a monthly basis during a 2-year period (2004–2005). In spite of high month-to-month variation, interannually consistent seasonal trends appeared, with significantly lower δ13C (〈−28.2‰) in spring than in the other seasons. In contrast, δ15N did not exhibit significant temporal variation. In spring and summer, high chlorophyll a and b concentrations were associated with low C/N values (〈8) and a high percentage of organic carbon (%C) and organic nitrogen (%N), testifying to high development of autochthonous riverine phytoplankton (mainly diatoms and chlorophytes). In fall and winter, higher δ13C (〉−27.2‰) and C/N (〉8) values, and lower %C, %N, and chlorophylls concentrations indicated the predominance of allochthonous terrestrial detritus material in the river POM. The lower δ13C values recorded in spring–summer, when the phytoplankton biomass was high, were related to the lower carbon isotopic signatures of freshwater diatoms and chlorophytes compared to those of terrestrial plants. Overall, Rhone River POM was mainly composed of terrestrially derived material (90%), with autochthonous phytoplankton representing only 10% as a mean, in spite of a higher mean contribution of phytoplankton (27%) to river POM in summer.

Description: Nutritional imbalances between predator and prey are the rule rather than the exception at the lower end of food webs. We investigated the role of different grazers in the propagation of nutritionally imbalanced primary production by using the same primary producers in a three-trophic-level food chain and a four-trophic-level food chain experimental setup. The three-trophic-level food chain consisted of a classic single-cell primary producer (Rhodomonas salina), a metazoan grazer (the copepod Acartia tonsa) and a top predator (the jellyfish Gonionemus vertens), while we added a protozoan grazer (Oxyrrhis marina) as primary consumer to the food chain to establish the four-trophic-level food chain. This setup allowed us to investigate how nutrient-limitation effects change from one trophic level to another, and to investigate the performance of two components of our experimental food chains in different trophic positions. Stoichiometry and fatty acid profiles of the algae showed significant differences between the nutrient-depleted [no N and no P addition (−P), respectively] and the nutrient-replete (f/2) treatments. The differences in stoichiometry could be traced when O. marina was the first consumer. Copepods feeding on these flagellates were not affected by the nutritional imbalance of their prey in their stoichiometry, their respiration rates nor in their developmental rates. In contrast, when copepods were the primary consumer, those reared on the −P algae showed significantly higher respiration rates along with significantly lower developmental rates. In neither of our two experimental food chains did the signals from the base of the food chains travel up to jelly fish, our top predator.

Description: A one-dimensional model is used to analyze, at the local scale, the response of the equatorial Atlantic Ocean under different meteorological conditions. The study was performed at the location of three moored buoys of the Pilot Research Moored Array in the Tropical Atlantic located at 10° W, 0° N; 10° W, 6° S; and 10° W, 10° S. During the EGEE-3 (Etude de la circulation océanique et de sa variabilité dans le Golfe de Guinee) campaign of May-June 2006, each buoy was visited for maintenance during 2 days. On board the ship, high-resolution atmospheric parameters were collected, as were profiles of temperature, salinity, and current. These data are used here to initialize, force, and validate a one-dimensional model in order to study the diurnal oceanic mixed-layer variability. It is shown that the diurnal variability of the sea surface temperatures is mainly driven by the solar heat flux. The diurnal response of the near-surface temperatures to daytime heating and nighttime cooling has an amplitude of a few tenths of degree. The computed diurnal heat budget experiences a net warming tendency of 31 and 27 W m‑2 at 0° N and 10° S, respectively, and a cooling tendency of 122 W m‑2 at 6° S. Both observed and simulated mixed-layer depths experience a jump between the nighttime convection phase and the well-stabilized diurnal water column. Its amplitude changes dramatically depending on the meteorological conditions occurring at the stations and reaches its maximum amplitude (~50 m) at 10° S. At 6° and 10° S, the presence of barrier layers is observed, a feature that is clearer at 10° S. Simulated turbulent kinetic energy (TKE) dissipation rates, compared to independent microstructure measurements, show that the model tracks their diurnal evolution reasonably well. It is also shown that the shear and buoyancy productions and the vertical diffusion of TKE all contribute to the supply of TKE, but the buoyancy production is the main source of TKE during the period of the simulation.

Description: Background, aim, and scope Dissolved humic substances (HSs) are exogenous stressors to aquatic plants and animals which activate a variety of transcriptional and biochemical reactions or block photosynthesis. While there are consistent indications which structures may lead to reduced photosynthetic activity, there is much less clear information available on which HS structures or building blocks act as stressors in animals. Consequently, this work was designed to comparatively study the impact of natural organic matter (NOMs) from different sources on major anti-stress mechanisms in one single animal. We utilized major antioxidant responses and relative expression levels of stress proteins (small HSPs and HSP70) and expected that different HSs provoke different response patterns. Materials and methods We tested the freshwater amphipod Gammarus pulex which was collected from several shallow creeks in Northern Germany. All specimens were maintained in aerated 5-L tanks with filtered water from their natural environment at 10°C with prior acclimation. Animals were fed ad libitum with a commercial preparation once every second day. The exposure water was exchanged with the same frequency. NOMs were isolated from three different sources: two from small brown-water lakes in Northern Germany by reverse osmosis and the third one as an aqueous extract from a black layer of a Brazilian sandbar soil (State of Rio de Janeiro). The rationale was to apply NOMs of contrasting quality. Chemical fingerprint features of the NOMs were taken by high-performance size exclusion chromatography. As stress parameters in the animals, the activities of peroxidase and catalase were recorded quantitatively, and stress proteins, HSP70, as well as small α-crystalline HSPs were analyzed semiquantitatively. Results The three NOMs clearly differed in molecular masses, humic substance contents, the moieties of polysaccharides, and low-molecular-weight substances. With the exception of one short-term response, the peroxidase activity increased after 3 to 12 h exposure, whereas the catalase activity did not show any significant modulation. With one exception, the stress protein expression increased after 30 min exposure in a biphasic pattern, and the sHSPs responded less strongly than HSP70. Discussion Although the quality of the exposed NOMs differs significantly, a rather uniform response pattern appears in the animals. Obviously, the contrasting contents of HSs and polysaccharides did not affect the anti-stress response of the exposed gammarids which is in contrast to previous lifespan studies with Caenorhabditis elegans. Furthermore, all NOM sources led to increased contents of both HSP70 and sHSPs. To the best of our knowledge, this is the first protein study to show that also small HSPs are expressed when the animals are exposed against humic material. Conclusions Since the response patterns of the exposed gammarids, in contrast to the initial hypothesis, are rather uniform and since HSs are parts of life on Earth, we furthermore presume that they may have been a primordial exogenous trigger for the development of anti-stress systems in exposed organisms. Recommendations and perspectives Effect studies of chemical stresses on organisms should consider exposure to both natural triggers and xenobiotic compounds in low concentrations—in order to prospectively differentiate between these triggers and, subsequently, classify them.

Description: The tissue distribution and ontogeny of Na+/K+-ATPase has been examined as an indicator for ion-regulatory epithelia in whole animal sections of embryos and hatchlings of two cephalopod species: the squid Loligo vulgaris and the cuttlefish Sepia officinalis. This is the first report of the immunohistochemical localization of cephalopod Na+/K+-ATPase with the polyclonal antibody α (H-300) raised against the human α1-subunit of Na+/K+-ATPase. Na+/K+-ATPase immunoreactivity was observed in several tissues (gills, pancreatic appendages, nerves), exclusively located in baso-lateral membranes lining blood sinuses. Furthermore, large single cells in the gill of adult L. vulgaris specimens closely resembled Na+/K+-ATPase-rich cells described in fish. Immunohistochemical observations indicated that the amount and distribution of Na+/K+-ATPase in late cuttlefish embryos was similar to that found in juvenile and adult stages. The ion-regulatory epithelia (e.g., gills, excretory organs) of the squid embryos and paralarvae exhibited less differentiation than adults. Na+/K+-ATPase activities for whole animals were higher in hatchlings of S. officinalis (157.0 ± 32.4 µmol gFM−1 h−1) than in those of L. vulgaris (31.8 ± 3.3 µmol gFM−1 h−1). S. officinalis gills and pancreatic appendages achieved activities of 94.8 ± 18.5 and 421.8 ± 102.3 µmolATP gFM−1 h−1, respectively. High concentrations of Na+/K+-ATPase in late cephalopod embryos might be important in coping with the challenging abiotic conditions (low pH, high pCO2) that these organisms encounter inside their eggs. Our results also suggest a higher sensitivity of squid vs. cuttlefish embryos to environmental acid-base disturbances.

Description: The phytoplankton of the Bahía Blanca Estuary, Argentina, has been surveyed since 1978. Chlorophyll a, phytoplankton abundance, species composition and physico-chemical variables have been fortnightly recorded. From 1978 to 2002, a single winter–early spring diatom bloom has dominated the main pattern of phytoplankton interannual variability. Such pattern showed noticeable changes since 2006: the absence of the typical winter bloom and changes in phenology, together with the replacement of the dominant blooming species, i.e. Thalassiosira curviseriata, and the appearance of different blooming species, i.e. Cyclotella sp. and Thalassiosira minima. The new pattern showed relatively short-lived diatom blooms that spread throughout the year. In addition, shifts in the phytoplankton size structure toward small-sized diatoms, including the replacement of relatively large Thalassiosira spp. by small Cyclotella species and Chaetoceros species have been noticed. The changes in the phenology and composition of the phytoplankton are mainly attributed to warmer winters and the extremely dry weather conditions evidenced in recent years in the Bahía Blanca area. Changing climate has modified the hydrological features in the inner part of the estuary (i.e. higher temperatures and salinities) and potentially triggered the reorganization of the phytoplankton community. This long-term study provides evidence on species-specific and structural changes at the bottom of the pelagic food web likely related to the recent hydroclimatic conditions in a temperature estuary of the southwestern Atlantic.

Description: Somatic mutations are an underappreciated source of genetic variation within multi-cellular organisms. The resulting genetic mosaicism should be particularly abundant in large clones of vegetatively propagating angiosperms. Little is known on the abundance and ecological correlates of genetic mosaicism in field populations, despite its potential evolutionary significance. Because sexual reproduction restores genetic homogeneity, we predicted that in facultatively clonally reproducing organisms, the prevalence of genetic mosaicism increases with increasing clonality. This was tested among 33 coastal locations colonized by the ecologically important marine angiosperm Zostera marina, ranging from Portugal to Finland. Genetic mosaics were detectable as complex microsatellite genotypes at two hypervariable loci that revealed additional mosaic alleles, suggesting the presence of one or more divergent cell lineages within the same ramet. The proportions of non-mosaic genotypes in a population sharply decreased below a clonal richness of 0.2. Accordingly, more genetic mosaics were found at the southern and northern limit of the distribution of Z. marina in Europe where sexual reproduction is rare or absent. The genetic mosaics observed at neutral microsatellite markers suggest the possibility of within-clone variation at selectively relevant loci and supports the notion that members of clones are seldom genetically identical.

Description: A new species of the pelagic marine copepod family Oncaeidae, Oncaea serrulata, is described from the Mediterranean Sea. The species belongs to the notopus-group of Oncaeidae, which are characterized by a long, free exopod on leg 5. It differs from Oncaea notopus Giesbrecht 1891 and any other described species of this group by a combination of morphological characters, including: (1) the relative lengths of distal endopod spines on swimming legs 2 and 3, (2) the denticulate ornamentation of the exopod segment and the two exopodal setae on leg 5, (3) the proportional lengths of the caudal setae, and (4) the comparatively small body length. The species occurs widespread in the Mediterranean Sea in mesopelagic and deep-sea layers down to 3,000 m depth and was also found in near-bottom sediment traps moored at a bottom depth of 2,347 m in the Ligurian Sea. O. serrulata appears to be the only representative of the notopus-group in the Mediterranean Sea and seems to have consistently been confounded with the allegedly cosmopolitan O. notopus Giesbrecht in most earlier studies in this area. The taxonomic history of Giesbrecht’s O. notopus, which was originally described from the Pacific, is summarized and morphological identification parameters applicable for the species identification of notopus-type oncaeids are discussed. In the future, identification may be facilitated by using genetic barcodes in comparison with those recently analysed for the Mediterranean O. serrulata (as Oncaea sp. 7 sensu Böttger-Schnack 1997). Published data on the zoogeographical and vertical distribution as well as the abundance of notopus-type oncaeids in the Mediterranean Sea are reviewed. Possible causes for the lack of positive records of this taxon in Mediterranean studies earlier than 1980 are discussed.

Description: Regional erosion of the Rock Garden ridge top, a bathymetric high within New Zealand’s Hikurangi Subduction Margin, is likely associated with its gas hydrate system. Seismic data reveal gas pockets that appear partially trapped beneath the shallow base of gas hydrate stability. Steady-state fluid flow simulations, conducted on detailed two-dimensional geological models, reveal that anomalous fluid pressure can develop close to the sea floor in response to lower-permeability hydrate-bearing sediments and underlying gas pockets. Transient simulations indicate that large-scale cycling of fluid overpressure may occur on time scales of a few to tens of years. We predict intense regions of hydro-fracturing to preferentially develop beneath the ridge top rather than beneath the flanks, due to more pronounced overpressure generation and gas migration through hydrate-bearing sediments. Results suggest that sediment weakening and erosion of the ridge top by hydro-fracturing could be owed to fluid dynamics of the shallow gas hydrate system.

Description: Detailed geological and petrological-geochemical study of rocks of the lava complex of Young Shiveluch volcano made it possible to evaluate the lava volumes, the relative sequence in which the volcanic edifice was formed, and the minimum age of the onset of eruptive activity. The lavas of Young Shiveluch are predominantly magnesian andesites and basaltic andesites of a mildly potassic calc-alkaline series (SiO2 = 55.0–63.5 wt %, Mg# = 55.5–68.9). Geologic relations and data on the mineralogy and geochemistry of rocks composing the lava complex led us to conclude that the magnesian andesites of Young Shiveluch volcano are of hybrid genesis and are a mixture of silicic derivatives and a highly magnesian magma that was periodically replenished in the shallow-depth magmatic chamber. The fractional crystallization of plagioclase and hornblende at the incomplete segregation of plagioclase crystals from the fractionating magmas resulted in adakitic geochemical parameters (Sr/Y = 50–71, Y 〈 18 ppm) of the most evolved rock varieties. Our results explain the genesis of the rock series of Young Shiveluch volcano without invoking a model of the melting of the subducting Pacific slab at its edge.

Description: The bacterial diversity of sea ice from Kiel Bight obtained during the rare event of solid ice cover in spring 1996 was analysed by molecular genetic approaches using an improved double gradient denaturing gradient gel electrophoretic method (DG-DGGE) to separate 16S rDNA fragments of approximately 500 bp. The excellent separation of individual bands within these gradient gels allowed us to obtain sequence information and to allocate the phylogenetic position of representative bacteria from the sea ice. The band pattern of the gradient gels revealed a vertical stratification of the bacterial species distribution within the ice and the presence of characteristic bacteria for each layer. According to their 16S rDNA sequences, major bands of the gradient gels represented bacteria closely related to fermenting species of the genera Propionibacterium and Bacteroides and to anoxygenic phototrophic purple sulfur bacteria (Chromatiaceae). Their abundance in horizons of the inner ice core may indicate the existence of oxygen-deficient and anoxic zones or niches and possible primary production by anoxygenic photosynthesis within the investigated Baltic Sea sea ice. This is the first phylogenetic evidence of the presence, and most probably the development, of phototrophic purple sulfur bacteria in sea ice.

Description: The geologic evidence for worldwide uplift of mountain ranges in the Neogene is ambiguous. Estimates of paleoelevation vary, according to whether they are based on the characteristics of fossil floras, on the masses and grain sizes of eroded sediments, or on calculations of increased thickness of the lithosphere as a result of faulting. Detrital erosion rates can be increased both by increased relief in the drainage basin and by a change to more seasonal rainfall patterns. The geologic record provides no clear answer to the question whether uplift caused the climatic deterioration of the Neogene or whether the changing climate affected the erosion system in such a way as to create an illusion of uplift. We suggest that the spread of C4 plants in the Late Miocene may have altered both the erosion and climate systems. These changes are responsible for the apparent contradictions between data supporting uplift and those supporting high elevations in the past.

Description: The response of rocky shore ecosystems to increased nutrient availability was examined in eight land-based mesocosms designed for hard-bottom littoral communities built at Marine Research Station Solbergstrand (Norway). The average seawater volume in each basin was 9 m3 with an average water residence time of about 2 h. A tidal regime resembling that in the fjord was maintained in the basins, and waves were generated regularly. NH4NO3 and H3PO4, at a constant molar NP ratio of 16:1, was added into 6 basins at concentrations 1, 2, 4, 8, 16, 32 μM DIN above the background DIN concentration during 1 1/2 years. Two mesocosms were kept as control treatment. Marine communities were introduced into the basins two years prior to the start of nutrient dosage. The effects of nutrient enrichment were few and only marginal during the first year of nutrient addition, while some effects became more obvious during the second year. The growth rate of the periphyton and fast-growing macroalgae communities was stimulated by nutrient enrichment, while the response was less evident among the perennial fucoids. The structure of the macroalgal communities, however, did not change during 16 months' measurements. In contrast, growth on artificial rock substrates during the same period of time revealed intensive growth of the fast-growing Ulva lactuca in high-dosed basins compared with low-dosed and control basins, which were dominated by the fucoid Fucus serratus. The fauna communities exhibited only a minor response to nutrient treatment. The common periwinkle Littorina littorea, however, appeared with increased abundance in the high-dosed basins. The total system metabolism tended to increase slightly, but not significantly, with increased nutrient loading.

Description: A total of 386 Macrourus whitsoni from Antarctic waters were examined for ecto- and endoparasites. Sixty-five M. whitsoni collected near Halley Bay (Weddell Sea) and 321 specimens from the continental slope off King George Island (South Shetland Islands) were studied for sphyriid copepods directly after being caught. A subsample of 25 specimens from the Weddell Sea and of 9 specimens from King George Island were studied for the presence of other metazoan parasites. Twenty-two species were found, including one myxozoan, six digeneans, one monogenean, three cestodes, seven nematodes, one acanthocephalan and three crustacean species/taxa. While Auerbachia monstrosa and Capillaria sp. are reported for the first time from around the Antarctic, the other parasites have been recorded earlier in the Southern Ocean. Many parasite species found have a wide zoogeographical range and a low host-specificity. The parasite fauna of M. whitsoni revealed several similarities with its congeners M. carinatus and M. holotrachys from Antarctic and sub-Antarctic waters. This can be explained by a wide host range of many macrourid deep-sea parasites, together with an overlap in distribution patterns of their hosts. Other supporting factors are host migration and a close phylogenetic relationship between the hosts, which enable the parasites to infest all three macrourids. Eight new host and 14 new locality records are established.

Description: Based on the re-interpretation of published data, the von Bertalanffy growth function parameters of the coelacanth, Latimeria chalumnae, are estimated as L∞=218 cm total length, s.e. 23; K=0.059 (year−1), s.e. 0.012; t0=−3.3 (year), s.e. 0.5, corresponding to a life span of 48 years. The length–weight relationship of the form W=a*TL∧b, with wet weight (W) in g and total length (TL) in cm, is estimated as a=0.0278, b=2.89, r2=0.893, n=87, range=42.5–183 cm TL. Using extreme value theory, the maximum length for female coelacanths is estimated as 199 cm TL (95% confidence interval=175–223 cm TL) and for males as 168 cm TL (95% confidence interval 155–180 cm TL). Based on data from seven females with embryos or mature eggs, the length-at-first-maturity for females is estimated to be about 150 cm TL, corresponding to an age of about 16 years. Based on the value of t0=−3.3 years and on the presence of three scale rings found in a newborn coelacanth, the period of embryogenesis lasts for about three years, the longest known in vertebrates. The natural mortality rate is estimated at M=0.12. Population food consumption is found to be 1.4 times the existing biomass per year, and gross food conversion efficiency indicates that only 10% of the consumed food is utilized for somatic growth.

Description: We examined the thermoregulatory behaviour (TRB) of roosting Humboldt penguins (Spheniscus humboldti) in north central Chile during summer and winter, when ambient temperatures (Ta) are most extreme. Each body posture was considered to represent a particular TRB, which was ranked in a sequence that reflected different degrees of thermal load and was assigned an arbitrary thermoregulatory score. During summer, birds exhibited eight different TRBs, mainly oriented to heat dissipation, and experienced a wide range of Ta (from 14 to 31°C), occasionally above their thermoneutral zone (TNZ, from 2 to 30°C), this being evident by observations of extreme thermoregulatory responses such as panting. In winter, birds exhibited only three TRBs, mainly oriented to heat retention, and experienced a smaller range of Ta (from 11 to 18°C), always within the TNZ, even at night. The components of behavioural responses increased directly with the heat load which explains the broader behavioural repertoire observed in summer. Since penguins are primarily adapted in morphology and physiology to cope with low water temperatures, our results suggest that behavioural thermoregulation may be important in the maintenance of the thermal balance in Humboldt penguins while on land.

Description: The production of defence metabolites is assumed to be costly in metabolic terms. If this holds true, low-light stress should reduce the ability of seaweeds to defend themselves chemically against herbivory and fouling. We investigated the effect of energy limitation on the defensive status of seaweeds by assessing their attractiveness to mesograzers and their activity against a bivalve macrofouler in comparison with non-stressed conspecifics. The macroalgae Codium decorticatum (Woodw.) M. Howe, Osmundaria obtusiloba (C. Agardh) R. E. Norris, Pterocladiella capillacea (S. G. Gmel.) Santel. and Hommer., Sargassum vulgare C. Agardh and Stypopodium zonale (Lamour.) Papenf. collected at the southeastern Brazilian coast were exposed to six levels of irradiation (between 1 and 180 μmol photons m−2 s−1) for 10–14 days. After this period, algae from all treatment levels were: (a) processed as artificial food and offered to an amphipod community dominated by Elasmopus brasiliensis Dana and (b) extracted to test for differences in settlement rates of the fouling mussel Perna perna L. on filter paper loaded with the crude extracts. Generally, photosynthesis rates and growth were reduced under low light conditions. Attractiveness to herbivores and macrofoulers, however, was insensitive to energy limitation. We discuss possible explanations for the observed absence of a relationship between light availability and algal defence including the change in nutritional value of the algal tissue, the allocation of resources towards defence instead of growth and the absence of costs for defence.

Description: We quantified the nitrogen and enzyme hydrolyzable amino acid (EHAA) concentrations of sediments prior to and after corals sloughed, ingested, and egested sediments layered onto their surfaces, for the three coral species Siderastrea siderea, Agaricia agaricites, and Porites astreoides in Jamaica. The percent nitrogen of the sediments egested by all three species was lower than in the sediments available to the corals. Additionally, the sediments sloughed (not ingested) by A. agaricites and P. astreoides were lower in percent nitrogen, while the sediments sloughed by S. siderea had the same percent nitrogen as that of the available sediments. The percent nitrogen of the sediments sloughed and egested by P. astreoides showed significant negative and positive relationships, respectively, to increasing sediment loads, while the percent nitrogen of the sediments sloughed and egested by both S. siderea and A. agaricites showed no relationship to sediment load. EHAA concentrations were not significantly different between the sloughed and available sediments but were significantly lower in the sediments egested by S. siderea and A. agaricites (EHAA concentrations were not measured for P. astreodies sediment fractions). Comparisons of the nitrogen and EHAA concentrations in the sloughed and egested sediments to what was available prior to coral processing show that maximum ingestion was between 0.1 and 0.2 µg N µg−1 coral N cm−2 and between 0.5 and 0.6 µg EHAA·cm−2. Maximum assimilation efficiencies were estimated to be 30–60% of the available nitrogen. The data show that corals ingest and alter the nitrogen concentration of particles that land on their surfaces. The corals’ abilities to process these sediments, and the sediments’ possible contributions to coral nutrition, are discussed based on these results.

Description: A new mandibular sensor is presented here based on the use of a Hall sensor, attached to one mandible, opposite a magnet, attached to the other mandible. Changes in sensor voltage, proportional to magnetic field strength, and thus inter-mandibular angle, are recorded in a logger. This system was tested on seven captive Adélie penguins (Pygoscelis adeliae) and three gentoo penguins (Pygoscelis papua) during: (1) feeding trials on land, where birds were given known quantities and types of food; and (2) trials in water where birds were allowed to swim and dive freely. In addition, six free-living Magellanic penguins (Spheniscus magellanicus) were equipped with the system for single foraging trips. Angular signatures were looked for in instances when both captive and free-living birds might open their beaks, and it was discovered that five major behaviours could be identified: ingestion, breathing, calling, head shaking and preening. Captive feeding trials showed that prey mass could be determined with reasonable accuracy (r 2=0.92), and there was some indication that prey type could be resolved if recording frequency were high enough. Vocalisations in Adélie penguins (arc calls) took 〈0.7 s for mean maximum beak angles of 4.2° (SD 1.3), and were distinguished by their relatively gradual change in beak angle and by their high degree of symmetry. Beak shakings were distinguishable by their short duration (multiple peaks of 〈0.5 s) and minimal maximum angle (〈0.5°). Preening behaviour was apparent due to multiple decreasing peaks (angles 〈8°). Breathing could be subdivided into that during porpoising, where a characteristic double peak in beak angle was recorded, and that during normal surface rests between dives. During porpoising, only the primary peak (mean maximum beak angle 25.1°, SD 4.7) occurred when the bird was out of the water (mean maximum for second peak 5.9°, SD 4.1). During normal surface rests in free-living birds, breaths could be distinguished as a series of beak openings and closures, showing variation in amplitude and frequency according to an apparent recovery from the previous dive and preparation for the subsequent dive to come. The mandibular measuring system presented shows considerable promise for elucidating many hitherto intractable aspects of the behaviour of free-living animals.

Description: Ferromanganese crusts from the Atlantic, Indian and Pacific Oceans record the Nd and Pb isotope compositions of the water masses from which they form as hydrogenous precipitates. The10Be/9Be-calibrated time series for crusts are compared to estimates based on Co-contents, from which the equatorial Pacific crusts studied are inferred to have recorded ca. 60 Ma of Pacific deep water history. Time series of ɛNd show that the oceans have maintained a strong provinciality in Nd isotopic composition, determined by terrigenous inputs, over periods of up to 60 Ma. Superimposed on the distinct basin-specific signatures are variations in Nd and Pb isotope time series which have been particularly marked over the last 5 Ma. It is shown that changes in erosional inputs, particularly associated with Himalayan uplift and the northern hemisphere glaciation have influenced Indian and Atlantic Ocean deep water isotopic compositions respectively. There is no evidence so far for an imprint of the final closure of the Panama Isthmus on the Pb and Nd isotopic composition in either Atlantic or Pacific deep water masses.

Description: The REE-Ti silicate chevkinite has been recognised previously in Miocene ignimbrites from Gran Canaria, and in correlative offshore syn-ignimbrite turbidites. We have estimated the partition coefficients of REE, Y, Zr and Nb for chevkinite and co-existing peralkaline rhyolitic (comendite) glass using synchrotron-XRF-probe analyses (SYXRF) in order to evaluate the role of this mineral in the REE budget of felsic peralkaline magmas. The Zr/Nb ratio of the chevkinite is 1.55–1.7, strongly contrasting with Zr/Nb of 6.5 in the associated glass. Zr shows a three-fold enrichment in chevkinite relative to the residual melt, whereas Nb is enriched by a factor 〉10. The enrichment of Ce and La in chevkinite is even more significant, namely 19 wt(%) Ce and 12 wt(%) La, compared to 236 ppm Ce and 119 ppm La in the glass. Chevkinite/glass ratios are 988±30 for La, 806±30 for Ce, 626±30 for Pr, 615±40 for Nd, 392±50 for Sm, 225±30 for Eu, 142±25 for Gd, 72±20 for Dy. For trace elements, we derived KdTE of 74±25 for Y, 〉8 for Hf, 〉50 for Th, 15±5 for Nb and 3.55±0.4 for Zr. Mineral/glass ratios for co-existing titanite are 28±10 for La, 86±20 for Ce, 98±30 for Pr, 134±35 for Nd, 240±50 for Sm, 50±20 for Eu, 96±25 for Gd, 82±25 for Dy, 99±30 for Y, 45±10 for Nb and 3±0.5 for Zr. Based on these data, the removal of only 0.05 wt% of chevkinite from a magma with initially 300 ppm Ce would deplete the melt by 93 ppm to yield 207 ppm Ce in the residual liquid. Chevkinite thus appears, when present, to be the controlling mineral within the LREE budget of evolved peralkaline magmas.

Description: Long-term dynamics (1960–1997) of the cladoceran species Bosmina coregoni maritima, Evadne nordmanni and Podon spp. are described for the Gdansk Deep and the Gotland Basin (Central Baltic Sea). By using correlation analyses on seasonal time-series, the influence of temperature and salinity on the abundance of cladoceran species was investigated. A clear affinity to higher temperature was found for B. coregoni maritima in summer as well as for E. nordmanni and Podon spp. in spring. In addition to temperature, association tests with salinity revealed besides species-specific preferences, regional and temporal differences. Contrary to B. coregoni maritima, both other species were positively associated to salinity in summer and autumn in the Gdansk Deep. In the Gotland Basin only E. nordmanni was positively correlated to salinity in autumn. Differences in the response to hydrographic variables are possibly stage specific, i.e. between resting eggs and adults, or due to a different adaptation to the abiotic environment.

Description: Pore water profiles from 24 stations in the South Atlantic (located in the Guinea, Angola, Cape, Guyana, and Argentine basins) show good correlations of oxygen and silicon, suggesting microbially mediated dissolution of biogenic silica. We used simple analytical transport and reaction models to show the tight coupling of the reconstructed process kinetics of aerobic respiration and silicon regeneration. A generic transport and reaction model successfully reproduced the majority of Si pore water profiles from aerobic respiration rates, confirming that the dissolution of biogenic silica (BSi) occurs proportionally to O2 consumption. Possibly limited to well-oxygenated sediments poor in BSi, benthic Si fluxes can be inferred from O2 uptake with satisfactory accuracy. Compared to aerobic respiration kinetics, the solubility of BSi emerged as a less influential parameter for silicon regeneration. Understanding the role of bacteria for silicon regeneration requires further investigations, some of which are outlined. The proposed aerobic respiration control of benthic silicon cycling is suitable for benthic–pelagic models. The empirical relation of BSi dissolution to aerobic respiration can be used for regionalization assessments and estimates of the silicon budget to in crease the understanding of global primary and export production patterns.

Description: The pelagic marine copepod family Oncaeidae is highly diversified (over 100 species worldwide) and includes a great number of sibling species, which are difficult to identify morphologically, because of their very small size (0.18–1.2 mm total length as adults). Global investigations of oncaeid biodiversity are severely hampered by insufficient taxonomic knowledge, in particular for species which have first been described from the European Mediterranean Sea (type locality). Many of these species have been reported as key taxa of small-sized copepod communities in very distant oceanic regions. However, due to the taxonomic uncertainties it cannot be excluded that at least some of these allegedly cosmopolitan species in reality represent a complex of distinct, yet closely related, species. To improve the basis for the identification of Oncaeidae of Mediterranean origin, new diagnostic characters in combination with traditional methods were applied in the present study. Copepods were sampled with fine nets of 0.1 mm mesh size down to a maximum depth of 1,000 m on a west-east-transect in the Mediterranean Sea. Oncaeid species and form variants were predefined morphologically and the genetic identity of the morphospecies was analysed by about 650 and 500 bp region of the mitochondrial COI and 12S srRNA gene sequence, respectively (barcoding). A total of 67 individuals from 24 oncaeid species and forms were successfully analysed, including 12 species and one form of Mediterranean origin. For Oncaeidae, the 12S amplification turned out to be more successful (23 species) than the COI amplification (13 species and 1 form). Together, the morphological and molecular results are discussed with respect to three topics: (1) confirmation of a genetic distinction of three Triconia species, which have been interpreted as sibling species by morphological characters, (2) genetic distance of species within the ovalis-complex of oncaeids and (3) the taxonomic status of two form variants of Oncaea mediterranea (Claus).

Description: Previous studies in Silurian carbonates from Gotland (Sweden) have led to a model for the development of limestone–marl alternations. This model postulates that early diagenesis of precursor sediments without strong primary differences can result in a differentiation by selective dissolution of aragonite in marl beds and reprecipitation of calcite cement in limestone beds. This model is described as a set of mathematical equations that quantify the diagenetic processes (aragonite dissolution and calcite reprecipitation) that occur during the formation of limestone–marl interbeds from a hypothetical homogeneous precursor sediment. The calculations demonstrate that resulting hypothetical limestone–marl alternations show characteristic mathematical relationships between the ratios of the bed thicknesses of limestones and marls on one side, and the carbonate contents, on the other. By reversing this model, the original mineralogical composition of the precursor sediment of real-world rhythmic successions can be determined. In this study, alternations from the Silurian of Gotland, the Cambrian, Devonian, and Mississippian of North America, the Jurassic of France and Germany, and the Cretaceous of France are shown to exhibit mathematical relationships similar to those calculated for hypothetical precursor sediments without primary differences. Therefore, the mineralogical composition of their precursor sediments can be estimated. In contrast, the clear mismatch shown by the Lower Jurassic Belemnite Marls from Dorset indicates that these rhythms did not suffer an early diagenetic overprint. Our model helps to differentiate between rhythmites with strong depositional variations and those without; however, it cannot indicate whether a given alternation is the product of rhythmic diagenesis of a homogeneous precursor sediment or the result of diagenetic enhancement of subtle underlying sedimentary rhythms. For horizontally correlated patterns, such as laterally extensive beds and layers of nodules, an a priori unknown external signal has to be assumed.

Description: Savo Island is the 6-km-diameter emergent summit of an andesitic-dacitic stratovolcano, rising from the Iron Bottom Sound, 35 km NW of Honiara, Solomon Islands. Savo has erupted at least three times within recorded history and the 3,000 inhabitants maintain extensive oral traditions of past events. Through description and interpretation of the volcaniclastic sequences on the island, in conjunction with historical accounts and oral traditions, we reconstruct the eruptive processes on Savo. Block-and-ash flow (BAF) deposits are volumetrically dominant on the island within three main depositional environments: near-vent sequences, thick medial channel sequences and distal fan sequences. The deposits comprise universally non-vesicular and highly porphyritic (40–70% phenocrysts), high-silica andesite and dacite clasts. These appear to have been derived from collapsing lava domes during an 1560–1570 a.d. eruption. However, eyewitness descriptions and crater morphology suggest that similar deposits formed from dome explosions or collapses of eruption columns during later eruptions (1830–1840a.d.).Thehigh-sodiummagmas(ca.5–7wt% Na2O) apparently crystallised and strongly degassed prior to eruption. Shallow explosions were possibly caused by entrapment of magmatic gases beneath a dome or conduit plug of highly crystalline, near solid magma. Repeated sealing of the vent may have been due to inward collapse of the highly altered rocks of the surrounding hydrothermal system; these rocks probably were saturated due to contemporaneous high intensity rainfall events. BAFs were hot enough to char vegetation and attain aligned clast TRM (thermal remnant magnetism) up to 3 km from the vent, many being accompanied by ash-cloud surges. Changes with distance in the BAF deposits appear mostly dependent on flow confinement and are limited to an overall decrease in thickness and maximum clast size, and an increased definition of weak planar fabrics. In distal fan sequences, there is strong evidence for syn- and posteruptive redeposition of primary deposits. Since the Savo population is concentrated on coastal volcaniclastic fans, we consider the greatest volcanic risk to life is from BAFs, associated ash-cloud surges and lahars. Hence, the main channels and fans are designated as the highest of three relative hazard zones on a simple map prepared to aid local education and planning initiatives on Savo.

Description: We analyzed bare human footprints in Holocene tuff preserved in two pits in the Acahualinca barrio in the northern outskirts of Managua (Nicaragua). Lithology, volcanology, and age of the deposits are discussed in a companion paper (Schmincke et al. Bull Volcanol doi: 10.1007/s00445-008-0235-9, 2008). The footprint layer occurs within a series of rapidly accumulated basaltic–andesitic tephra that is regionally correlated to the Masaya Triple Layer Tephra. The people were probably trying to escape from a powerful volcanic eruption at Masaya Caldera 20 km farther south that occurred at 2.1 ka BP. We subdivided the swath of footprints, up to 5.6 m wide, in the northern pit (Pit I) into (1) a central group of footprints made by about six individuals, the total number being difficult to determine because people walked in each other’s footsteps one behind the other and (2) two marginal groups on either side of the central group with more widely spaced tracks. The western band comprises tracks of three adjacent individuals and an isolated single footprint farther out. The eastern marginal area comprises an inner band of deep footprints made by three individuals and, farther out, three clearly separated individuals. We estimate the total number of people as 15–16. In the southern narrow and smaller pit (Pit II), we recognize tracks of ca. 12 individuals, no doubt made by the same group. The group represented in both pits probably comprised male and female adults, teenagers and children based on differences in length of footprints and of strides and depth of footprints made in the soft wet ash. The smallest footprints (probably made by children) occur in the central group, where protection was most effective. The footprint layer is composed of a lower 5–15-cm thick, coarse-grained vesicle tuff capped by a medium to fine-grained tuff up to 3 cm thick. The surface on which the people walked was muddy, and the soft ash was squeezed up on the sides of the foot imprints and between toes. Especially, deep footprints are mainly due to local thickening of the water-rich ash, multiple track use, and differences in weight of individuals. The excellent preservation of the footprints, ubiquitous mudcracks, sharp and well-preserved squeeze-ups along the margins of the tracks and toe imprints, and the absence of raindrop impressions all suggest that the eruption occurred during the dry season. The people walked at a brisk pace, as judged from the tight orientation of the swath and the length of the strides. The directions of a major erosional channel in the overlying deposits that probably debouched into Lake Managua and the band of footprints are strictly parallel, indicating that people walked together in stride along the eastern margin of a channel straight toward the lake shore, possibly a site with huts and/or boats for protection and/or escape.

Description: Very high-frequency marine multichannel seismic reflection data generated by small-volume air- or waterguns allow detailed, high-resolution studies of sedimentary structures of the order of one to few metres wavelength. The high-frequency content, however, requires (1) a very exact knowledge of the source and receiver positions, and (2) the development of data processing methods which take this exact geometry into account. Static corrections are crucial for the quality of very high-frequency stacked data because static shifts caused by variations of the source and streamer depths are of the order of half to one dominant wavelength, so that they can lead to destructive interference during stacking of CDP sorted traces. As common surface-consistent residual static correction methods developed for land seismic data require fixed shot and receiver locations two simple and fast techniques have been developed for marine seismic data with moving sources and receivers to correct such static shifts. The first method – called CDP static correction method – is based on a simultaneous recording of Parasound sediment echosounder and multichannel seismic reflection data. It compares the depth information derived from the first arrivals of both data sets to calculate static correction time shifts for each seismic channel relative to the Parasound water depths. The second method – called average static correction method – utilises the fact that the streamer depth is mainly controlled by bird units, which keep the streamer in a predefined depth at certain increments but do not prevent the streamer from being slightly buoyant in-between. In case of calm weather conditions these streamer bendings mainly contribute to the overall static time shifts, whereas depth variations of the source are negligible. Hence, mean static correction time shifts are calculated for each channel by averaging the depth values determined at each geophone group position for several subsequent shots. Application of both methods to data of a high-resolution seismic survey of channel-levee systems on the Bengal Fan shows that the quality of the stacked section can be improved significantly compared to stacking results achieved without preceding static corrections. The optimised records show sedimentary features in great detail, that are not visible without static corrections. Limitations only result from the sea floor topography. The CDP static correction method generally provides more coherent reflections than the average static correction method but can only be applied in areas with rather flat sea floor, where no diffraction hyperbolae occur. In contrast, the average static correction method can also be used in regions with rough morphology, but the coherency of reflections is slightly reduced compared to the results of the CDP static correction method.

Description: Two submarine volcanoes (named Friday and Domingo) have been mapped and sampled to the west of the youngest island (Alexander Selkirk) in the Juan Fernandez chain, SE Pacific. Samples from the seamounts are fresh, highly vesicular olivine and plagioclase-phyric basanites. Their MgO contents lie between 7 and 4 wt.%. Major element variation trends, especially decreasing SiO2 with increasing MgO, cannot be explained by crystal fractionation, and suggest the influence of CO2 during partial melting. Highly incompatible element ratios in both Friday and Domingo magmas are identical, with the exception of ratios involving Th and Nb for which Domingo shows depletions. These depletions are coupled with depletions in Zr, Hf and Ca and enrichments in the heavy rare-earth elements and Al2O3. All these geochemical features can be explained if the Domingo magmas reacted with harzburgitic mantle materials during transit to the surface in a manner shown experimentally to occur during CO2-dominated kimberlite magmatism. The metasomatism results in the stabilisation of clinopyroxene, rutile and zircon which withhold the elements depleted at Domingo, and the breakdown of garnet which releases HREE and Al into the magmas. Magmas erupting from the large, more mature Friday edifice have traversed a mantle region already metasomatised during earlier stages of volcanism and so are not significantly modified during passage. The Juan Fernandez trace element patterns are similar to the low 87Sr/86Sr, high 143Nd/144Nd components in many Pacific hotspots and to the pattern suggested for recycled, altered, dehydrated oceanic crust, implying that such recycled crust is a common component in many hotspots. Isotopically, the Juan Fernandez magmas lie between the composition of prevalent mantle (PREMA) and HIMU.

Description: Tephra fallout layers and volcaniclastic deposits, derived from volcanic sources around and on the Papuan Peninsula, form a substantial part of the Woodlark Basin marine sedimentary succession. Sampling by the Ocean Drilling Program Leg 180 in the western Woodlark Basin provides the opportunity to document the distribution of the volcanically-derived components as well as to evaluate their chronology, chemistry, and isotope compositions in order to gain information on the volcanic sources and original magmatic systems. Glass shards selected from 57 volcanogenic layers within the sampled Pliocene–Pleistocene sedimentary sequence show predominantly rhyolitic compositions, with subordinate basaltic andesites, basaltic trachy-andesites, andesites, trachy-andesites, dacites, and phonolites. It was possible to correlate only a few of the volcanogenic layers between sites using geochemical and age information apparently because of the formation of strongly compartmentalised sedimentary realms on this actively rifting margin. In many cases it was possible to correlate Leg 180 volcanic components with their eruption source areas based on chemical and isotope compositions. Likely sources for a considerable number of the volcanogenic deposits are Moresby and Dawson Strait volcanoes (D’Entrecasteaux Islands region) for high-K calc-alkaline glasses. The Dawson Strait volcanoes appear to represent the source for five peralkaline tephra layers. One basaltic andesitic volcaniclastic layer shows affinities to basaltic andesites from the Woodlark spreading tip and Cheshire Seamount. For other layers, a clear identification of the sources proved impossible, although their isotope and chemical signatures suggest similarities to south-west Pacific subduction volcanism, e.g. New Britain and Tonga– Kermadec island arcs. Volcanic islands in the Trobriand Arc (for example, Woodlark Island Amphlett Islands and/ or Egum Atoll) are probable sources for several volcaniclastic layers with ages between 1.5 to 3 Ma. The Lusancay Islands can be excluded as a source for the volcanogenic layers found during Leg 180. Generally, the volcanogenic layers indicate much calc-alkaline rhyolitic volcanism in eastern Papua since 3.8 Ma. Starting at 135 ka, however, peralkaline tephra layers appear. This geochemical change in source characteristics might reflect the onset of a change in geotectonic regime, from crustal subduction to spreading, affecting the D’Entrecasteaux Islands region. Initial 143Nd/144Nd ratios as low as 0.5121 and 0.5127 for two of the tephra layers are interpreted as indicating that D’Entrecasteaux Islands volcanism younger than 2.9 Ma occasionally interacted with the Late Archean basement, possibly reflecting the mobilisation of the deep continental crust during active rift propagation.

Description: A numerical model of the Atlantic Ocean was used to study the low-frequency variability of meridional transports in the North Atlantic. The model shows a behaviour similar to those used in previous studies, and the temporal variability of certain variables compares favourably to observed time series. By changing the depth and width of the sills between the subpolar North Atlantic and the Nordic Seas, the mean horizontal and overturning circulation as well as some water mass properties are modified significantly. The reaction of meridional oceanic transports to atmospheric forcing fluctuations remains, however, unchanged. The critical role of the surface heat flux retroaction term for the meridional heat transport in stand-alone ocean models is discussed. The experiments underline the role of atmospheric variability for fluctuations of the large-scale ocean circulation on time scales from years to decades, and they support the hypothesis that the mean overturning strength is controlled by the model representation of the density of the overflow water masses.

Description: Based on existing knowledge about phytoplankton responses to nutrients and food size spectra of herbivorous zooplankton, three different configurations of pelagic food webs are proposed for three different types of marine nutrient regimes: (1) upwelling systems, (2) oligotrophic oceanic systems, (3) eutrophicated coastal systems. Up-welling systems are characterised by high levels of plant nutrients and high ratios of Si to N and R. Phytoplankton consists mainly of diatoms together with a subdominant contribution of flagellates. Most phytoplankton falls into the food spectrum of herbivorous, crustacean zooplankton. Therefore, herbivorous crustaceans occupy trophic level 2 and zooplanktivorous fish occupy trophic level 3. Phytoplankton in oligotrophic, oceanic systems is dominated by picoplankton, which are too small to be ingested by copepods. Most primary production is channelled through the ‘microbial loop’ (picoplankton — heterotrophic nanoflagellates — ciliates). Sporadically, pelagic tunicates also consume a substantial proportion of primary production. Herbivorous crustaceans feed on heterotrophic nanoflagellates and ciliates, thus occupying a food chain position between 3 and 4, which leads to a food chain position between 4 and 5 for zooplanktivorous fish. By cultural eutrophication, N and P availability are elevated while Si remains unaffected or even declines. Diatoms decrease in relative importance while summer blooms of inedible algae (Phaeocystis, toxic dinoflagellates, toxic prymnesiophyceae, etc.) prevail. The spring bloom may still contain a substantial contribution of diatoms. The production of the inedible algae enters the pelagic energy flow via the detritus food chain: DOC release by cell lysis — bacteria — heterotrophic nanoflagellates — ciliates. Accordingly, crustacean zooplankton occupy food chain position 4 to 5 during the non-diatom seasons. Ecological efficiency considerations lead to the conclusion that fish production:primary production ratios should be highest in upwelling systems and substantially lower in oligotrophic and in culturally eutrophicated systems. Further losses of fish production may occur when carnivorous, gelatinous zooplankton (jellyfish) replace fish.

Description: Seismic reflection data document for the first time the existence of a BSR in a limited area west of the Dnieper Canyon in the northwestern Black Sea. Seismic wide-angle data suggest that gas hydrates occupy in average 15±2% of the pore space in a zone of 100 m in thickness. A conservative quantification of the amount of methane associated with this gas hydrate occurrence is about 12±3×1011 m3 (0.6±0.2 Gt of methane carbon). Conductive heat flow deduced from the BSR depth is in the range of 21±6 to 55±15 mW m−2.

Description: We propose a new method for obtaining average velocities and eddy diffusivities from Lagrangian data. Rather than grouping the drifter-derived velocities in geographical bins, we group them by nearest-neighbor distance using a clustering algorithm. This yields sets with approximately the same number of observations, covering unequal areas. A major advantage is that, because the number of observations is the same for the clusters, the statistical accuracy is more uniform than with geographical bins. We illustrate the technique using synthetic data from a stochastic model, employing a realistic mean flow. The latter represents the surface currents in the Nordic Seas and is strongly inhomogeneous in space. We use the clustering algorithm to extract the mean velocities and diffusivities and compare the results with the corresponding quantities from the stochastic model. We perform a similar comparison with the means and diffusivities obtained with geographical bins. Clustering is more successful at capturing the mean flow and improves convergence in the eddy diffusivity estimates. We discuss both the advantages and shortcomings of the new method.

Description: The influence of the natural variability of the Atlantic meridional overturning circulation (AMOC) on the atmosphere is studied in multi-centennial simulations of six global climate models, using Maximum Covariance Analysis (MCA). In all models, a significant but weak influence of the AMOC changes is found during the Northern Hemisphere cold-season, when the ocean leads the atmosphere by a few years. Although the oceanic pattern slightly varies, an intensification of the AMOC is followed in all models by a weak sea level pressure response that resembles a negative phase of the North Atlantic Oscillation (NAO). The signal amplitude is typically 0.5 hPa and explains about 10% of the yearly variability of the NAO in all models. The atmospheric response seems to be due primarily due to an increase of the heat loss along the North Atlantic Current and the subpolar gyre, associated with an AMOC-driven warming. Sea-ice changes appear to be less important. The stronger heating is associated to a southward shift of the lower-tropospheric baroclinicity and a decrease of the eddy activity in the North Atlantic storm track, which is consistent with the equivalent barotropic perturbation resembling the negative phase of the NAO. This study thus provides some evidence of an atmospheric signature of the AMOC in the cold-season, which may have some implications for the decadal predictability of climate in the North Atlantic region.

Description: Subfossil Cladocera were sampled and examined from the surface sediments of 35 thermokarst lakes along a temperature gradient crossing the tree line in the Anabar-river basin in northwestern Yakutia, northeastern Siberia. The lakes were distributed through three environmental zones: typical tundra, southern tundra and forest tundra. All lakes were situated within the continuous permafrost zone. Our investigation showed that the cladoceran communities in the lakes of the Anabar region are diverse and abundant, as reflected by taxonomic richness, and high diversity and evenness indices (H = 1.89 ± 0.51; I = 0.8 ± 0.18). CONISS cluster analysis indicated that the cladoceran communities in the three ecological zones (typical tundra, southern tundra and forest-tundra) differed in their taxonomic composition and structure. Differences in the cladoceran assemblages were related to limnological features and geographical position, vegetation type, climate and water chemistry. The constrained redundancy analysis indicated that TJuly, water depth and both sulphate (SO4 2−) and silica (Si4+) concentrations significantly (p ≤ 0.05) explained variance in the cladoceran assemblage. TJuly featured the highest percentage (17.4 %) of explained variance in the distribution of subfossil Cladocera. One of the most significant changes in the structure of the cladoceran communities in the investigated transect was the replacement of closely related species along the latitudinal and vegetation gradient. The results demonstrate the potential for a regional cladoceran-based temperature model for the Arctic regions of Russia, and for and Yakutia in particular.

Description: A large monothalamous foraminiferan, Toxisarcon taimyr sp. nov., has been isolated from the benthic samples from the Kara Sea inner shelf near the mouth of Yenisey river estuary, at a depth of 50–100 m. In its overall morphology, the new species closely resembles T. synsuicidica, one of the two species of Toxisarcon described to date. It possesses a large irregularly shaped cell body, covered by a thin layer of a fibrous organic coating. Numerous reticulopodia typically extend from all over the cell surface; the species is very motile and rapidly changes cell shape. Long and thick reticulopodial bundles form in the direction of movement. In the phylogenetic tree based on partial small-subunit ribosomal DNA (SSU rDNA) sequences, T. taimyr branches together with the two other known species of Toxisarcon within the clade C of monothalamous foraminifera.

Description: The Hydrograph model (a distributed process-based model) was applied to the simulation of soil freeze-thaw and runoff processes, to assess the viability of the model approach and the influence of specific environmental factors in a permafrost environment. Three mountainous permafrost watersheds were studied, at the Kolyma Water Balance Station in north-eastern Russia. The watersheds include rocky talus, mountainous tundra and moist larch-forest landscape regimes, and they were modelled at daily time-steps for the period 1971–1984. Simulated results of soil freeze-thaw depth and runoff showed reasonable agreement with observed values. This study reveals and mathematically describes the dependence of surface and subsurface flow on thawing depth and landscape characteristics. Process analysis and modelling in permafrost regions, including ungauged basins, is suggested, with observable properties of landscapes being used as model parameters, combined with an appropriate level of physically based conceptualization.

Description: Concerns about the slow pace of climate mitigation have led to renewed dialogue about solar-radiation management, which could be achieved by adding reflecting aerosols to the stratosphere1, 2, 3, 4, 5, 6. Modelling studies suggest that solar-radiation management could produce stabilized global temperatures and reduced global precipitation4, 5, 6. Here we present an analysis of regional differences in a climate modified by solar-radiation management, using a large-ensemble modelling experiment that examines the impacts of 54 scenarios for global temperature stabilization. Our results confirm that solar-radiation management would generally lead to less extreme temperature and precipitation anomalies, compared with unmitigated greenhouse gas emissions. However, they also illustrate that it is physically not feasible to stabilize global precipitation and temperature simultaneously as long as atmospheric greenhouse gas concentrations continue to rise. Over time, simulated temperature and precipitation in large regions such as China and India vary significantly with different trajectories for solar-radiation management, and they diverge from historical baselines in different directions. Hence, it may not be possible to stabilize the climate in all regions simultaneously using solar-radiation management. Regional diversity in the response to different levels of solar-radiation management could make consensus about the optimal level of geoengineering difficult, if not impossible, to achieve.

Description: A regional forest carbon budget accounting technique based on carbon pools balance with incomes from growing woodstocks and losses from harvesting, fires and other disturbances have been developed. Forest carbon budgets of the Russian administrative units during 1988–2009 have been accounted. The carbon sink to Russian forests have increased from 80 Mt C × yr−1 in 1988 to 230–240 Mt C × yr−1 in late 2000s. This tendency is explained with the decline in harvesting, which have started in 1990s. European part of Russia was found to have higher areally averaged carbon sink compared with the Asian part. It have been associated with peculiar ways of wildfires governance in these two parts.

Description: Homoscleromorph sponges such as Oscarella spp. are characterized by unique morphological features, and Homoscleromorpha were therefore recently proposed as the fourth class of sponges. The microbiology of these sponges was mainly studied by electron microscopy while molecular studies are scarce. The aim of this study was to characterize the bacteria in Oscarella sponges using molecular tools. Denaturing gradient gel electrophoresis revealed distinct bacterial profiles in five Oscarella species and several color morphs of Oscarella lobularis. These profiles are characteristic of low microbial abundance (LMA) sponges. This was further confirmed by analysis of a 16S rRNA clone library from O. lobularis that yielded a low phylum-level diversity with dominance of Alphaproteobacteria. Bacterial communities in O. lobularis were very similar among different individuals (collected at the same site and time), five different color morphs, and specimens from different depths and locations, indicating a species-specific association. These results allow novel insights into the microbiology of the first known LMA sponge genus within the new class Homoscleromorpha.

Description: Marine sponges are well known for their associations with highly diverse, yet very specific and often highly similar microbiota. The aim of this study was to identify potential bacterial sub-populations in relation to sponge phylogeny and sampling sites and to define the core bacterial community. 16S ribosomal RNA gene amplicon pyrosequencing was applied to 32 sponge species from eight locations around the world's oceans, thereby generating 2567 operational taxonomic units (OTUs at the 97% sequence similarity level) in total and up to 364 different OTUs per sponge species. The taxonomic richness detected in this study comprised 25 bacterial phyla with Proteobacteria, Chloroflexi and Poribacteria being most diverse in sponges. Among these phyla were nine candidate phyla, six of them found for the first time in sponges. Similarity comparison of bacterial communities revealed no correlation with host phylogeny but a tropical sub-population in that tropical sponges have more similar bacterial communities to each other than to subtropical sponges. A minimal core bacterial community consisting of very few OTUs (97%, 95% and 90%) was found. These microbes have a global distribution and are probably acquired via environmental transmission. In contrast, a large species-specific bacterial community was detected, which is represented by OTUs present in only a single sponge species. The species-specific bacterial community is probably mainly vertically transmitted. It is proposed that different sponges contain different bacterial species, however, these bacteria are still closely related to each other explaining the observed similarity of bacterial communities in sponges in this and previous studies. This global analysis represents the most comprehensive study of bacterial symbionts in sponges to date and provides novel insights into the complex structure of these unique associations.

Description: In this study, we present a single-cell genomics approach for the functional characterization of the candidate phylum Poribacteria, members of which are nearly exclusively found in marine sponges. The microbial consortia of the Mediterranean sponge Aplysina aerophoba were singularized by fluorescence-activated cell sorting, and individual microbial cells were subjected to phi29 polymerase-mediated 'whole-genome amplification'. Pyrosequencing of a single amplified genome (SAG) derived from a member of the Poribacteria resulted in nearly 1.6 Mb of genomic information distributed among 554 contigs analyzed in this study. Approximately two-third of the poribacterial genome was sequenced. Our findings shed light on the functional properties and lifestyle of a possibly ancient bacterial symbiont of marine sponges. The Poribacteria are mixotrophic bacteria with autotrophic CO(2)-fixation capacities through the Wood-Ljungdahl pathway. The cell wall is of Gram-negative origin. The Poribacteria produce at least two polyketide synthases (PKSs), one of which is the sponge-specific Sup-type PKS. Several putative symbiosis factors such as adhesins (bacterial Ig-like domains, lamininin G domain proteins), adhesin-related proteins (ankyrin, fibronectin type III) and tetratrico peptide repeat domain-encoding proteins were identified, which might be involved in mediating sponge-microbe interactions. The discovery of genes coding for 24-isopropyl steroids implies that certain fossil biomarkers used to date the origins of metazoan life on earth may possibly be of poribacterial origin. Single-cell genomic approaches, such as those shown herein, contribute to a better understanding of beneficial microbial consortia, of which most members are, because of the lack of cultivation, inaccessible by conventional techniques.

Description: Sponges (phylum Porifera) are sessile marine filter feeders that have developed efficient defense mechanisms against foreign attackers such as viruses, bacteria, or eukaryotic organisms. Protected by a highly complex immune system, as well as by the capacity to produce efficient antiviral compounds (e.g., nucleoside analogues), antimicrobial compounds (e.g., polyketides), and cytostatic compounds (e.g., avarol), they have not become extinct during the last 600 million years. It can be assumed that during this long period of time, bacteria and microorganisms coevolved with sponges, and thus acquired a complex common metabolism. It is suggested that (at least) some of the bioactive secondary metabolites isolated from sponges are produced by functional enzyme clusters, which originated from the sponges and their associated microorganisms. As a consequence, both the host cells and the microorganisms lost the ability to grow independently from each other. Therefore, it was—until recently—impossible to culture sponge cells in vitro. Also the predominant number of “symbiotic bacteria” proved to be nonculturable. In order to exploit the bioactive potential of both the sponge and the “symbionts,” a 3D-aggregate primmorph culture system was established; also it was proved that one bioactive compound, avarol/avarone, is produced by the sponge Dysidea avara. Another promising way to utilize the bioactive potential of the microorganisms is the cloning and heterologous expression of enzymes involved in secondary metabolism, such as the polyketide synthases.

Description: Submarine slope failures of various types and sizes are common along the tectonic and seismically active Ligurian margin, northwestern Mediterranean Sea, primarily because of seismicity up to ~M6, rapid sediment deposition in the Var fluvial system, and steepness of the continental slope (average 11°). We present geophysical, sedimentological and geotechnical results of two distinct slides in water depth 〉1,500 m: one located on the flank of the Upper Var Valley called Western Slide (WS), another located at the base of continental slope called Eastern Slide (ES). WS is a superficial slide characterized by a slope angle of ~4.6° and shallow scar (~30 m) whereas ES is a deep-seated slide with a lower slope angle (~3°) and deep scar (~100 m). Both areas mainly comprise clayey silt with intermediate plasticity, low water content (30–75 %) and underconsolidation to strong overconsolidation. Upslope undeformed sediments have low undrained shear strength (0–20 kPa) increasing gradually with depth, whereas an abrupt increase in strength up to 200 kPa occurs at a depth of ~3.6 m in the headwall of WS and ~1.0 m in the headwall of ES. These boundaries are interpreted as earlier failure planes that have been covered by hemipelagite or talus from upslope after landslide emplacement. Infinite slope stability analyses indicate both sites are stable under static conditions; however, slope failure may occur in undrained earthquake condition. Peak earthquake acceleration from 0.09 g on WS and 0.12 g on ES, i.e. M5–5.3 earthquakes on the spot, would be required to induce slope instability. Different failure styles include rapid sedimentation on steep canyon flanks with undercutting causing superficial slides in the west and an earthquake on the adjacent Marcel fault to trigger a deep-seated slide in the east.

Description: Abyssal temperature and velocity observations performed within the framework of the Neutrino Mediterranean Observatory, a project devoted to constructing a km3-scale underwater telescope for the detection of high-energy cosmic neutrinos, demonstrate cross-fertilization between subnuclear physics and experimental oceanography. Here we use data collected south of Sicily in the Ionian abyssal plain of the Eastern Mediterranean (EM) basin to show for the first time that abyssal vortices exist in the EM, at depths exceeding 2,500 m. The eddies consist of chains of near-inertially pulsating mesoscale cyclones/anticyclones. They are embedded in an abyssal current flowing towards North-Northwest. The paucity of existing data does not allow for an unambiguous determination of the vortex origin. A local generation mechanism seems probable, but a remote genesis cannot be excluded a priori. The presence of such eddies adds further complexity to the discussion of structure and evolution of water masses in the EM.

Description: Salinity is a major factor controlling the distribution of biota in aquatic systems, and most aquatic multicellular organisms are either adapted to life in saltwater or freshwater conditions. Consequently, the saltwater–freshwater mixing zones in coastal or estuarine areas are characterized by limited faunal and floral diversity. Although changes in diversity and decline in species richness in brackish waters is well documented in aquatic ecology, it is unknown to what extent this applies to bacterial communities. Here, we report a first detailed bacterial inventory from vertical profiles of 60 sampling stations distributed along the salinity gradient of the Baltic Sea, one of world's largest brackish water environments, generated using 454 pyrosequencing of partial (400 bp) 16S rRNA genes. Within the salinity gradient, bacterial community composition altered at broad and finer-scale phylogenetic levels. Analogous to faunal communities within brackish conditions, we identified a bacterial brackish water community comprising a diverse combination of freshwater and marine groups, along with populations unique to this environment. As water residence times in the Baltic Sea exceed 3 years, the observed bacterial community cannot be the result of mixing of fresh water and saltwater, but our study represents the first detailed description of an autochthonous brackish microbiome. In contrast to the decline in the diversity of multicellular organisms, reduced bacterial diversity at brackish conditions could not be established. It is possible that the rapid adaptation rate of bacteria has enabled a variety of lineages to fill what for higher organisms remains a challenging and relatively unoccupied ecological niche.

Description: The Denmark Strait overflow water is the largest dense water plume from the Nordic seas to feed the lower limb of the Atlantic Meridional Overturning Circulation. Its primary source is commonly thought to be the East Greenland Current. However, the recent discovery of the North Icelandic Jet—a deep-reaching current that flows along the continental slope of Iceland—has called this view into question. Here we present high-resolution measurements of hydrography and velocity north of Iceland, taken during two shipboard surveys in October 2008 and August 2009. We find that the North Icelandic Jet advects overflow water into the Denmark Strait and constitutes a pathway that is distinct from the East Greenland Current. We estimate that the jet supplies about half of the total overflow transport, and infer that it is the primary source of the densest overflow water. Simulations with an ocean general circulation model suggest that the import of warm, salty water from the North Icelandic Irminger Current and water-mass transformation in the interior Iceland Sea are critical to the formation of the jet. We surmise that the timescale for the renewal of the deepest water in the meridional overturning cell, and its sensitivity to changes in climate, could be different than presently envisaged.

Description: Several cold vents are observed at the northern Cascadia margin offshore Vancouver Island in a 10 km2 region around Integrated Ocean Drilling Program Expedition 311 Site U1328. All vents are linked to fault systems that provide pathways for upward migrating fluids and at three vents methane plumes were detected acoustically in the water column. Downhole temperature measurements at Site U1328 revealed a geothermal gradient of 0.056 ± 0.004°C/m. With the measured in situ pore-water salinities the base of methane hydrate stability is predicted at 218–245 meters below seafloor. Heat-probe measurements conducted across Site U1328 and other nearby vents showed an average thermal gradient of 0.054 ± 0.004°C/m. Assuming that the bottom-simulating reflector (BSR) marks the base of the gas hydrate stability zone variations in BSR depths were used to investigate the linkages between the base of the gas hydrate stability zone and fluid migration. Variations in BSR depth can be attributed to lithology-related velocity changes or variations of in situ pore-fluid compositions. Prominent BSR depressions and reduced heat flow are seen below topographic highs, but only a portion of the heat flow reduction can be due to topography-linked cooling. More than half of the reduction may be due to thrust faulting or to pore-water freshening. Distinct changes in BSR depth below seafloor are observed at all cold vents studied and some portion of the observed decrease in the BSR depth was attributed to fault-related upwelling of warmer fluids. The observed decrease in BSR depth below seafloor underneath the vents ranges between 7 and 24 m (equivalent to temperature shifts of 0.07–0.15°C).

Description: Noble-gas geochemistry is an important tool for understanding planetary processes from accretion to mantle dynamics and atmospheric formation. Central to much of the modelling of such processes is the crystal–melt partitioning of noble gases during mantle melting, magma ascent and near-surface degassing5. Geochemists have traditionally considered the 'inert' noble gases to be extremely incompatible elements, with almost 100 per cent extraction efficiency from the solid phase during melting processes. Previously published experimental data on partitioning between crystalline silicates and melts has, however, suggested that noble gases approach compatible behaviour, and a significant proportion should therefore remain in the mantle during melt extraction. Here we present experimental data to show that noble gases are more incompatible than previously demonstrated, but not necessarily to the extent assumed or required by geochemical models. Independent atomistic computer simulations indicate that noble gases can be considered as species of 'zero charge' incorporated at crystal lattice sites. Together with the lattice strain model9, 10, this provides a theoretical framework with which to model noble-gas geochemistry as a function of residual mantle mineralogy.

Description: The Northern Pacific seastar, Asterias amurensis, is a benthic marine predator, which has recently established several invasive populations in Australian waters. To investigate population structure, diversity and patterns of connectivity, we isolated and characterised 27 microsatellite loci and tested their polymorphism based on 46 individuals from two invasive populations. The mean allelic richness was 4.33; observed heterozygosity was 0.42, while the percentage of polymorphic loci was 92.6%. The polymorphic markers will prove useful in the assessment of population genetic parameters, in both invasive and native A. amurensis populations.

Description: M. Dunbar (1957) called attention to the existence of a small circular polynya about 50 m in diameter in Cambridge Fiord in northern Baffin Island for which there was no obvious explanation. Other small polynyas are known in arctic fjords which are usually the result of turbulent mixing in areas of strong currents (Sadler 1974), but Cambridge Fiord is 100 km long, its tidal range is small, and the polynya is situated within 300 m of the delta face at the head of the fjord so that strong turbulence is very unlikely. The annual reappearance of the polynya in late winter is confirmed by a series of aerial survey photographs taken by the Royal Canadian Air Force between 1952 and 1957 and also by reports from Inuit hunters from Pond Inlet. It is first seen within about two weeks of 15 March appearing in exactly the same position each year as a circle with a diameter of about 40 m. Over a period of about a week, a lead extends from the polynya to the shore and open water is visible in the tide crack for several hundred metres either side of the shore end of the lead. The lead, unlike the polynya, changes its position from year to year, but once formed it remains fixed until general break-up (Figure 1).

Description: This Encyclopedia comprises the current knowledge in marine geosciences whereby not only basic but also applied and technical sciences are covered. Through this concept a broad scale of users in the field of marine sciences and techniques is addressed, from students and scholars in academia to engineers and decision makers in industry and politics. Globally growing demand of energy and mineral resources, reliable future projection of climate processes and the protection of coasts to mitigate the threats of disasters and hazards require a comprehensive understanding of the structure, ongoing processes and genesis of the marine geosphere. Beyond the “classical” research fields in marine geology in current time more general concepts have been evolved integrating marine geophysics, hydrography, marine biology, climatology and ecology. As an umbrella the term “marine geosciences” has been broadly accepted for this new complex field of research and the solutions of practical tasks in the marine realm.

Description: Rhodopseudomonas globiformis is able to grow on sulfate as sole source of sulfur, but only at concentrations below 1 mM. Good growth was observed with thiosulfate, cysteine or methionine as sulfur sources. Tetrathionate supported slow growth. Sulfide and sulfite were growth inhibitory. Growth inhibition by higher sulfate concentrations was overcome by the addition of O-acetylserine, which is known as derepressor of sulfate-assimilating enzymes, and by reduced glutathione. All enzymes of the sulfate assimilation pathway. ATP-sulfurylase, adenylylphosphate-sulfotransferase, thiosulfonate reductase and O-acetylserine sulfhydrylase are present in R. globiformis. Sulfate was taken up by the cells and the sulfur incorporated into the amino acids cysteine, methionine and homocysteine. It is concluded, that the failure of R. globiformis to grow on higher concentrations of sulfate is caused by disregulation of the sulfate assimilation pathway. Some preliminary evidence for this view is given in comparing the activities of some of the involved enzymes after growth on different sulfur sources and by examining the effect of O-acetylserine on these activities.

Description: The ability to use adenosine 5′-phosphosulfate (APS) or 3′-phosphoadenosine 5′-phosphosulfate (PAPS) as the substrate for the initial reductive step in sulfate assimilation has been tested in most of the known Rhodospirillaceae species and in some chemotrophic bacteria. Improved and optimized methods for the synthesis and purification of the sulfonucleotides APS and PAPS are described. The production of acid volatile radioactivity from 35S-APS and 35S-PAPS was measured under various conditions in the presence and absence of non-labeled sulfate. Specific differences in the ability to reduce APS or PAPS were observed among the Rhodospirillaceae species and also the chemotrophic bacteria. APS was found to be the substrate of the thiolsulfotransferase in Rps. acidophila, Rps. globiformis, Rm. vannielii, Rc. purpureus, R. tenue, Rps. gelatinosa, in Alcaligenes eutrophus and Pseudomonas aeruginosa. PAPS was the substrate in Rps. capsulata, Rps. sphaeroides, Rps. sulfidophila, Rps. palustris, Rps. viridis, R. rubrum, R. fulvum, in Paracoccus denitrificans and in several Enterobacteriaceae. The presence of different enzymatic systems for sulfate reduction in the Rhodospirillaceae family is compared with their taxonomical grouping and their possible phylogenetic relatedness.