ALBERT

Description: Arctic sea ice area (SIA) during late summer and early fall decreased substantially over the last four decades, and its decline accelerated beginning in the early 2000s. Statistical analyses of observations show that enhanced poleward moisture transport from the North Pacific to the Arctic Ocean contributed to the accelerated SIA decrease during the most recent period. As a consequence, specific humidity in the Arctic Pacific sector significantly increased along with an increase of downward longwave radiation beginning in 2002, which led to a significant acceleration in the decline of SIA in the Arctic Pacific sector. The resulting sea ice loss led to increased evaporation in the Arctic Ocean, resulting in a further increase of the specific humidity in mid-to-late fall, thus acting as a positive feedback to the sea ice loss. The overall set of processes is also found in a long control simulation of a coupled climate model.

Description: Linear diterpenes that are commonly found in brown algae are of high chemotaxonomic and ecological importance. This study reports bifurcatriol (1), a new linear diterpene featuring two stereogenic centers isolated from the Irish brown alga Bifurcariabifurcata. The gross structure of this new natural product was elucidated based on its spectroscopic data (IR, 1D and 2D-NMR, HRMS). Its absolute configuration was identified by experimental and computational vibrational circular dichroism (VCD) spectroscopy, combined with the calculation of 13C-NMR chemical shielding constants. Bifurcatriol (1) was tested for in vitro antiprotozoal activity towards a small panel of parasites (Plasmodium falciparum, Trypanosoma brucei rhodesiense, T. cruzi, and Leishmania donovani) and cytotoxicity against mammalian primary cells. The highest activity was exerted against the malaria parasite P. falciparum (IC50 value 0.65 μg/mL) with low cytotoxicity (IC50 value 56.6 μg/mL). To our knowledge, this is the first successful application of VCD and DP4 probability analysis of the calculated 13C-NMR chemical shifts for the simultaneous assignment of the absolute configuration of multiple stereogenic centers in a long-chain acyclic natural product.

Description: In the present study, the influence of some major tropical modes of variability on northern hemisphere regional blocking frequency variability during boreal winter is investigated. Reanalysis data and an ensemble experiment with the ECMWF model using relaxation towards the ERA-Interim reanalysis data inside the tropics are used. The tropical modes under investigation are El Niño Southern Oscillation (ENSO), the Madden-Julian Oscillation (MJO) and the upper tropospheric equatorial zonal-mean zonal wind . An early (late) MJO phase refers to the part of the MJO cycle when enhanced (suppressed) precipitation occurs over the western Indian Ocean and suppressed (enhanced) precipitation occurs over the Maritime Continent and the western tropical Pacific. Over the North Pacific sector, it is found that enhanced (suppressed) high latitude blocking occurs in association with El Niño (La Niña) events, late (early) MJO phases and westerly (easterly) . Over central to southern Europe and the east Atlantic, it is found that late MJO phases, as well as a suppressed MJO are leading to enhanced blocking frequency. Furthermore, early (late) MJO phases are followed by blocking anomalies over the western North Atlantic region, similar to those associated with a positive (negative) North Atlantic Oscillation. Over northern Europe, the easterly (westerly) phase of is associated with enhanced (suppressed) blocking. These results are largely confirmed by both the reanalysis and the model experiment.

Description: The Eddy Kinetic Energy (EKE) associated with the Subtropical Countercurrent (STCC) in the western subtropical South Pacific is known to exhibit substantial seasonal and decadal variability. Using an eddy-permitting ocean general circulation model, which is able to reproduce the observed, salient features of the seasonal cycles of shear, stratification, baroclinic production and the associated EKE, we investigate the decadal changes of EKE. We show that the STCC region exhibits, uniquely among the subtropical gyres of the world’s oceans, significant, atmospherically forced, decadal EKE variability. The decadal variations are driven by changing vertical shear between the STCC in the upper 300 m and the South Equatorial Current below, predominantly caused by variations in STCC strength associated with a changing meridional density gradient. In the 1970s, an increased meridional density gradient results in EKE twice as large as in later decades in the model. Utilizing sensitivity experiments, decadal variations in the wind field are shown to be the essential driver. Local wind stress curl anomalies associated with the Interdecadal Pacific Oscillation (IPO) lead to up- and downwelling of the thermocline, inducing strengthening or weakening of the STCC and the associated EKE. Additionally, remote wind stress curl anomalies in the eastern subtropical South Pacific, which are not related to the IPO, generate density anomalies that propagate westward as Rossby waves and can account for up to 30–40 % of the density anomalies in the investigated region.

Description: The structural repertoire of bioactive naphthacene quinones is expanded by engineering Streptomyces albus to express the lysolipin minimal polyketide synthase II (PKS II) genes from Streptomyces tendae Tü 4042 (llpD-F) with the corresponding cyclase genes llpCI-CIII. Fermentation of the recombinant strain revealed the two new polyaromatic tridecaketides lysoquinone-TH1 (7, identified) and TH2 (8, postulated structure) as engineered congeners of the dodecaketide lysolipin (1). The chemical structure of 7, a benzo[a]naphthacene-8,13-dione, was elucidated by NMR and HR-MS and confirmed by feeding experiments with [1,2-13C2]-labeled acetate. Lysoquinone-TH1 (7) is a pentangular polyphenol and one example of such rare extended polyaromatic systems of the benz[a]napthacene quinone type produced by the expression of a minimal PKS II in combination with cyclases in an artificial system. While the natural product lysolipin (1) has antimicrobial activity in nM-range, lysoquinone-TH1 (7) showed only minor potency as inhibitor of Gram-positive microorganisms. The bioactivity profiling of lysoquinone-TH1 (7) revealed inhibitory activity towards phosphodiesterase 4 (PDE4), an important target for the treatment in human health like asthma or chronic obstructive pulmonary disease (COPD). These results underline the availability of pentangular polyphenolic structural skeletons from biosynthetic engineering in the search of new chemical entities in drug discovery

Description: The Indian Ocean has sustained robust surface warming in recent decades, but the role of multi-decadal variability remains unclear. Using ocean model hindcasts, characteristics of low-frequency Indian Ocean temperature variations are explored. Simulated upper-ocean temperature changes across the Indian Ocean in the hindcast are consistent with those recorded in observational products and ocean reanalyses. Indian Ocean temperatures exhibit strong warming trends since the 1950s limited to the surface and south of 30°S, while extensive subsurface cooling occurs over much of the tropical Indian Ocean. Previous work focused on diagnosing causes of these long-term trends in the Indian Ocean over the second half of the 20th Century. Instead, the temporal evolution of Indian Ocean subsurface heat content is shown here to reveal distinct multi-decadal variations associated with the Pacific Decadal Oscillation and the long-term trends are thus interpreted to result from aliasing of the low-frequency variability. Transmission of the multi-decadal signal occurs via an oceanic pathway through the Indonesian Throughflow and is manifest across the Indian Ocean centered along 12°S as westward propagating Rossby waves modulating thermocline and subsurface heat content variations. Resulting low-frequency changes in the eastern Indian Ocean thermocline depth are associated with decadal variations in the frequency of Indian Ocean Dipole (IOD) events, with positive IOD events unusually common in the 1960s and 1990s with a relatively shallow thermocline. In contrast, the deeper thermocline depth in the 1970s and 1980s is associated with frequent negative IOD and rare positive IOD events. Changes in Pacific wind forcing in recent decades and associated rapid increases in Indian Ocean subsurface heat content can thus affect the basin’s leading mode of variability, with implications for regional climate and vulnerable societies in surrounding countries.

Description: The North Atlantic Oscillation (NAO) and the Arctic Oscillation (AO) describe the dominant part of the variability in the Northern Hemisphere extratropical troposphere. Due to the strong connection of these patterns with surface climate, recent years have shown an increased interest and an increasing skill in forecasting them. However, it is unclear what the intrinsic limits of short-term predictability for the NAO and AO patterns are. This study compares the variability and predictability of both patterns, using a range of data and index computation methods for the daily NAO/AO indices. Small deviations from Gaussianity are found and characteristic decorrelation time scales of around one week. In the analysis of the Lyapunov spectrum it is found that predictability is not significantly different between the AO and NAO or between reanalysis products. Differences exist however between the indices based on EOF analysis, which exhibit predictability time scales around 12 - 16 days, and the station-based indices, exhibiting a longer predictability of 18 - 20 days. Both of these time scales indicate predictability beyond that currently obtained in ensemble prediction models for short-term predictability. Additional longer-term predictability for these patterns may be gained through local feedbacks and remote forcing mechanisms for particular atmospheric conditions.

Description: The 13th European Polar Low Workshop was organized by the European Polar Low Working Group (www.uni-trier.de/index.php?id=20308)and gathered scientists from nine countries focusing on polar mesocyclones in both hemispheres and other mesoscale weather phenomena such as katabatic winds, tip jets, boundary layer fronts, cold air outbreaks, and weather extremes in polar regions. Topics included experimental, climatological, theoretical, modeling, and remote sensing studies. The aim was to bring together scientists and forecasters to present their latest work and recent findings on these topics and to encourage discussions on improving forecasting and understanding of these phenomena.

Description: The regional climate model COSMOin Climate Limited-AreaMode (COSMO-CLM or CCLM) is used with a high resolution of 15km for the entire Arctic for all winters 2002/03–2014/15. The simulations show a high spatial and temporal variability of the recent 2-m air temperature increase in the Arctic. The maximum warming occurs north of Novaya Zemlya in the Kara Sea and Barents Sea between March 2003 and 2012 and is responsible for up to a 208C increase. Land-based observations confirm the increase but do not cover the maximum regions that are located over the ocean and sea ice.Also, the 30-km version of theArctic SystemReanalysis (ASR) is used to verify the CCLM for the overlapping time period 2002/03–2011/12. The differences between CCLM and ASR 2-m air temperatures vary slightly within 18C for the ocean and sea ice area. Thus,ASR captures the extreme warming as well. The monthly 2-m air temperatures of observations and ERA-Interim data show a large variability for the winters 1979–2016. Nevertheless, the air temperature rise since the beginning of the twenty-first century is up to 8 times higher than in the decades before. The sea ice decrease is identified as the likely reason for the warming. The vertical temperature profiles show that the warming has a maximum near the surface, but a 0.58Cyr21 increase is found up to 2 km. CCLM, ASR, and also the coarser resolved ERA-Interim data show that February and March are the months with the highest 2-m air temperature increases, averaged over the ocean and sea ice area north of 708N; for CCLM the warming amounts to an average of almost 58C for 2002/03–2011/12.

Description: The knowledge of the phase behavior of carbon dioxide (CO2)-rich mixtures is a key factor to understand the chemistry and migration of natural volcanic CO2 seeps in the marine environment, as well as to develop engineering processes for CO2 sequestration coupled to methane (CH4) production from gas hydrate deposits. In both cases, it is important to gain insights into the interactions of the CO2-rich phase—liquid or gas—with the aqueous medium (H2O) in the pore space below the seafloor or in the ocean. Thus, the CH4-CO2 binary and CH4-CO2-H2O ternary mixtures were investigated at relevant pressure and temperature conditions. The solubility of CH4 in liquid CO2 (vapor-liquid equilibrium) was determined in laboratory experiments and then modelled with the Soave–Redlich–Kwong equation of state (EoS) consisting of an optimized binary interaction parameter kij(CH4-CO2) = 1.32 × 10−3 × T − 0.251 describing the non-ideality of the mixture. The hydrate-liquid-liquid equilibrium (HLLE) was measured in addition to the composition of the CO2-rich fluid phase in the presence of H2O. In contrast to the behavior in the presence of vapor, gas hydrates become more stable when increasing the CH4 content, and the relative proportion of CH4 to CO2 decreases in the CO2-rich phase after gas hydrate formation.

Description: The formation of secondary ice in clouds, i.e. ice particles that are created at temperatures above the limit for homogeneous freezing without the direct involvement of a heterogeneous ice nucleus is one of the longest standing puzzles in cloud physics. Here we present comprehensive laboratory investigations on the formation of small ice particles upon the freezing of drizzle-sized cloud droplets levitated in an electrodynamic balance. Four different categories of secondary ice formation (bubble bursting, jetting, cracking, breakup) could be detected and their respective frequencies of occurrence as a function of temperature and droplet size are given. We find that bubble bursting occurs more often than droplet splitting. While we do not observe the shattering of droplets into many large fragments, we find that the average number of small secondary ice particles released during freezing is strongly droplet-size dependent and may well exceed unity for droplets larger than 300 μm in diameter. This leaves droplet fragmentation an important secondary ice process effective at temperatures around -10 °C in clouds where large drizzle droplets are present.

Description: Well-known problems trouble coupled general circulation models of the eastern Atlantic and Pacific Ocean basins. Model climates are significantly more symmetric about the equator than is observed. Model sea surface temperatures are biased warm south and southeast of the equator, and the atmosphere is too rainy within a band south of the equator. Near-coastal eastern equatorial SSTs are too warm, producing a zonal SST gradient in the Atlantic opposite in sign to that observed. The U.S. Climate Variability and Predictability Program (CLIVAR) Eastern Tropical Ocean Synthesis Working Group (WG) has pursued an updated assessment of coupled model SST biases, focusing on the surface energy balance components, on regional error sources from clouds, deep convection, winds, and ocean eddies; on the sensitivity to model resolution; and on remote impacts. Motivated by the assessment, the WG makes the following recommendations: 1) encourage identification of the specific parameterizations contributing to the biases in individual models, as these can be model dependent; 2) restrict multimodel intercomparisons to specific processes; 3) encourage development of high-resolution coupled models with a concurrent emphasis on parameterization development of finer-scale ocean and atmosphere features, including low clouds; 4) encourage further availability of all surface flux components from buoys, for longer continuous time periods, in persistently cloudy regions; and 5) focus on the eastern basin coastal oceanic upwelling regions, where further opportunities for observational–modeling synergism exist.

Description: We have developed a transportable spectroscopic nitrogen isotopic analyzer. The spectrometer is based on dual-modulation Faraday rotation spectroscopy of nitric oxide isotopologues with near shot-noise limited performance and baseline-free operation. Noise analysis indicates minor isotope (15NO) detection sensitivity of 0.36 ppbv·Hz−1/2, corresponding to noise-equivalent Faraday rotation angle (NEA) of 1.31 × 10−8 rad·Hz−1/2 and noise-equivalent absorbance (αL)min of 6.27 × 10−8 Hz−1/2. White-noise limited performance at 2.8× the shot-noise limit is observed up to ~1000 s, allowing reliable calibration and sample measurement within the drift-free interval of the spectrometer. Integration with wet-chemistry based on acidic vanadium(III) enables conversion of aqueous nitrate/nitrite samples to gaseous NO for total nitrogen isotope analysis. Isotopic ratiometry is accomplished via time-multiplexed measurements of two NO isotope transitions. For 5 μmol potassium nitrate samples, the instrument consistently yields ratiometric precision below 0.3‰, thus demonstrating potential as an in situ diagnostic tool for environmental nitrogen cycle studies.

Description: In the frame of studies on secondary metabolites produced by fungi from deep-sea environments we have investigated inhibitors of enzymes playing key roles in signaling cascades of biochemical pathways relevant for the treatment of diseases. Here we report on a new inhibitor of the human protein tyrosine phosphatase 1B (PTP1B), a target in the signaling pathway of insulin. A new asperentin analog is produced by an Aspergillus sydowii strain isolated from the sediment of the deep Mediterranean Sea. Asperentin B (1) contains an additional phenolic hydroxy function at C-6 and exhibits an IC50 value against PTP1B of 2 μM in vitro, which is six times stronger than the positive control, suramin. Interestingly, asperentin (2) did not show any inhibition of this enzymatic activity. Asperentin B (1) is discussed as possible therapeutic agents for type 2 diabetes and sleeping sickness.

Description: The ratio of global mean surface air temperature change to cumulative CO2 emissions, referred to as transient climate response to cumulative CO2 emissions (TCRE), has been shown to be approximately constant on centennial time scales. The mechanisms behind this constancy are not well understood, but previous studies suggest that compensating effects of ocean heat and carbon fluxes, which are governed by the same ocean mixing processes, could be one cause for this approximate constancy. This hypothesis is investigated by forcing different versions of the University of Victoria Earth System Climate Model, which differ in the ocean mixing parameterization, with an idealized scenario of 1% annually increasing atmospheric CO2 until quadrupling of the preindustrial CO2 concentration and constant concentration thereafter. The relationship between surface air warming and cumulative emissions remains close to linear, but the TCRE varies between model versions, spanning the range of 1.2°–2.1°C EgC−1 at the time of CO2 doubling. For all model versions, the TCRE is not constant over time while atmospheric CO2 concentrations increase. It is constant after atmospheric CO2 stabilizes at 1120 ppm, because of compensating changes in temperature sensitivity (temperature change per unit radiative forcing) and cumulative airborne fraction. The TCRE remains approximately constant over time even if temperature sensitivity, determined by ocean heat flux, and cumulative airborne fraction, determined by ocean carbon flux, are taken from different model versions with different ocean mixing settings. This can partially be explained with temperature sensitivity and cumulative airborne fraction following similar trajectories, which suggests ocean heat and carbon fluxes scale approximately linearly with changes in vertical mixing.

Description: The Weddell Sea polynya is a large opening in the open-ocean sea ice cover associated with intense deep convection in the ocean. A necessary condition to form and maintain a polynya is the presence of a strong subsurface heat reservoir. This study investigates the processes that control the stratification and hence the buildup of the subsurface heat reservoir in the Weddell Sea. To do so, a climate model run for 200 years under preindustrial forcing with two eddying resolutions in the ocean (0.25° CM2.5 and 0.10° CM2.6) is investigated. Over the course of the simulation, CM2.6 develops two polynyas in the Weddell Sea, while CM2.5 exhibits quasi-continuous deep convection but no polynyas, exemplifying that deep convection is not a sufficient condition for a polynya to occur. CM2.5 features a weaker subsurface heat reservoir than CM2.6 owing to weak stratification associated with episodes of gravitational instability and enhanced vertical mixing of heat, resulting in an erosion of the reservoir. In contrast, in CM2.6, the water column is more stably stratified, allowing the subsurface heat reservoir to build up. The enhanced stratification in CM2.6 arises from its refined horizontal grid spacing and resolution of topography, which allows, in particular, a better representation of the restratifying effect by transient mesoscale eddies and of the overflows of dense waters along the continental slope.

Description: A new cyclic dipeptide, petrocidin A (1), along with three known compounds—2,3dihydroxybenzoic acid (2), 2,3-dihydroxybenzamide (3), and maltol (4)—were isolated from the solid culture of Streptomyces sp. SBT348. The strain Streptomyces sp. SBT348 had been prioritized in a strain collection of 64 sponge-associated actinomycetes based on its distinct metabolomic profile using liquid chromatography/high-resolution mass spectrometry (LC-HRMS) and nuclear magnetic resonance (NMR). The absolute configuration of all α-amino acids was determined by HPLC analysis after derivatization with Marfey’s reagent and comparison with commercially available reference amino acids. Structure elucidation was pursued in the presented study by mass spectrometry and NMR spectral data. Petrocidin A (1) and 2,3-dihydroxybenzamide (3) exhibited significant cytotoxicity towards the human promyelocytic HL-60 and the human colon adenocarcinoma HT-29 cell lines. These results demonstrated the potential of sponge-associated actinomycetes for the discovery of novel and pharmacologically active natural products.

Description: The combination of LC-MS/MS based metabolomics approach and anti-MRSA activity-guided fractionation scheme was applied on the Gram-negative bacterium Aequorivita sp. isolated from shallow Antarctic sea sediment using a miniaturized culture chip technique. This methodology afforded the isolation of three new (1–3) and four known (4–7) N-terminal glycine- or serine-bearing iso-fatty acid amides esterified with another iso-fatty acid through their C-3 hydroxy groups. The chemical structures of the new compounds were elucidated using a set of spectroscopic (NMR, [α]D and FT-IR) and spectrometric (HRMS, HRMS/MS) methods. The aminolipids possessing an N-terminal glycine unit (1, 2, 4, 5) showed moderate in vitro antimicrobial activity against MRSA (IC50 values 22–145 µg/mL). This is the first in-depth chemistry and biological activity study performed on the microbial genus Aequorivita.

Description: As part of an international research project, the marine fungal strain collection of the Helmholtz Centre for Ocean Research (GEOMAR) research centre was analysed for secondary metabolite profiles associated with anticancer activity. Strain MF458 was identified as Tolypocladium geodes, by internal transcribed spacer region (ITS) sequence similarity and its natural product production profile. By using five different media in two conditions and two time points, we were able to identify eight natural products produced by MF458. As well as cyclosporin A (1), efrapeptin D (2), pyridoxatin (3), terricolin A (4), malettinins B and E (5 and 6), and tolypocladenols A1/A2 (8), we identified a new secondary metabolite which we termed tolypocladenol C (7). All compounds were analysed for their anticancer potential using a selection of the NCI60 cancer cell line panel, with malettinins B and E (5 and 6) being the most promising candidates. In order to obtain sufficient quantities of these compounds to start preclinical development, their production was transferred from a static flask culture to a stirred tank reactor, and fermentation medium development resulted in a nearly eight-fold increase in compound production. The strain MF458 is therefore a producer of a number of interesting and new secondary metabolites and their production levels can be readily improved to achieve higher yields

Description: Seasonal variability in pathways of warm water masses toward the Kangerdlugssuaq Fjord-Glacier system (KF/KG), southeast Greenland, is investigated by backtracking Lagrangian particles seeded at the fjord mouth in a high-resolution regional ocean model simulation in the ice-free and the ice-covered seasons. The waters at KF are a mixture of Atlantic-origin water advected from the Irminger Basin (FF for Faxaflói), the deep waters from the Denmark Strait and the waters from the Arctic Ocean, both represented by the Kögur section (KO). Below 200m depth, the warm water is a mixture of FF and KO water masses, and is warmer in winter than in summer. We find that seasonal differences in pathways double the fraction of FF particles in winter, causing the seasonal warming and salinification. Seasonal temperature variations at the upstream sections (FF and KO) have a negligible impact on temperature variations near the fjord. Successful monitoring of heat flux to the fjord therefore needs to take place close to the fjord, and cannot be inferred from upstream conditions.

Description: This study explores non-metric multidimensional scaling (nMDS) as a tool for investigating parasites as indicators of the elasmobranch biology. An attractive feature of nMDS is its ability to allow assemblage-level parasite data to be simultaneously applied to questions of host biology. This method was examined using the tapeworm order Trypanorhyncha Diesing, 1863, which is known to be transmitted among their hosts through the marine food web (via predation), can unambiguously be identified in the intermediate and final hosts, and has the potential as an indicator of the host feeding biology. Our analyses focused on trypanorhynch assemblages in elasmobranchs as definitive hosts. The relationships between trypanorhynch assemblages and the depth, feeding ecology, habitat, and phylogeny for all sharks were complex, but we found that depth distribution, diet composition and habitat type were the major influencing factors. Several species of sharks showed different characters than known from their descriptions that could be attributed to the change of shark behavior or the trypanorhynch host path. The relationship between the trypanorhynch assemblage and factors for carcharhiniform species alone was more robust than for all sharks. In the carcharhiniform analysis, the relationship between habitat type and trypanorhynch assemblage was most remarkable. Overlapping host ecology was evident even in phylogenetically-distant related hosts.

Description: In Ammassalik, in southeast Greenland, downslope winds can reach hurricane intensity and represent a hazard for the local population and environment. They advect cold air down the ice sheet and over the Irminger Sea, where they drive large ocean–atmosphere heat fluxes over an important ocean convection region. Earlier studies have found them to be associated with a strong katabatic acceleration over the steep coastal slopes, flow convergence inside the valley of Ammassalik, and—in one instance—mountain wave breaking. Yet, for the general occurrence of strong downslope wind events, the importance of mesoscale processes is largely unknown. Here, two wind events—one weak and one strong—are simulated with the atmospheric Weather Research and Forecasting (WRF) Model with different model and topography resolutions, ranging from 1.67 to 60 km. For both events, but especially for the strong one, it is found that lower resolutions underestimate the wind speed because they misrepresent the steepness of the topography and do not account for the underlying wave dynamics. If a 5-km model instead of a 60-km model resolution in Ammassalik is used, the flow associated with the strong wind event is faster by up to 20 m s−1. The effects extend far downstream over the Irminger Sea, resulting in a diverging spatial distribution and temporal evolution of the heat fluxes. Local differences in the heat fluxes amount to 20%, with potential implications for ocean convection.

Description: Predicting tropical cyclone (TC) activity becomes more important every year while the understanding of what factors impact them continues to be complicated. El Niño–Southern Oscillation (ENSO) is one of the primary factors impacting the activities in both the Pacific and the Atlantic, but an extensive examination of the fluctuation in this system has yet to be studied in its entirety. This article analyzes the ENSO impacts on the Atlantic tropical cyclone activity during the assessed warm and cold years to show the dominant centennial-scale variation impact. This study looks to plausibly link this variation to the Southern Ocean centennial variability, which is rarely mentioned in any factors affecting the Atlantic tropical cyclone activity. This centennial variability could be used to enhance future work related to predicting tropical cyclones.

Description: Downward wave coupling (DWC) is an important process that characterizes the dynamical coupling between the stratosphere and troposphere via planetary wave reflection. A recent modeling study indicated that natural forcing factors, including sea-surface temperature variability and quasi-biennial oscillation, influence DWC and the associated surface impact in the Northern Hemisphere (NH). In light of this, we further investigate how DWC in the NH is affected by anthropogenic forcings, using a fully coupled chemistry-climate model CESM1 (WACCM). The results indicate that the occurrence of DWC is significantly suppressed in the future, starting later in the seasonal cycle, with more events concentrated in late winter (February-March). The future decrease in DWC events is associated with enhanced wave absorption in the stratosphere due to increased greenhouse gases. The enhanced wave absorption is manifest as more absorbing types of stratospheric sudden warmings, with more events concentrated in early winter. This early winter condition leads to a delay in the development of the upper stratospheric reflecting surface, resulting in a shift in the seasonal cycle of DWC towards late winter. The tropospheric responses to DWC events in the future exhibit different spatial patterns compared to those of the past. In the North Atlantic sector, DWC-induced circulation changes are characterized by a poleward shift and an eastward extension of the tropospheric jet, while in the North Pacific sector, the circulation changes are characterized by a weakening of the tropospheric jet. These responses are consistent with a change in the pattern of DWC-induced synoptic-scale eddy-mean flow interaction.

Description: Decadal variabilities in Indian Ocean subsurface ocean heat content (OHC; 50–300 m) since the 1950s are examined using ocean reanalyses. This study elaborates on how Pacific variability modulates the Indian Ocean on decadal time scales through both oceanic and atmospheric pathways. High correlations between OHC and thermocline depth variations across the entire Indian Ocean Basin suggest that OHC variability is primarily driven by thermocline fluctuations. The spatial pattern of the leading mode of decadal Indian Ocean OHC variability closely matches the regression pattern of OHC on the interdecadal Pacific oscillation (IPO), emphasizing the role of the Pacific Ocean in determining Indian Ocean OHC decadal variability. Further analyses identify different mechanisms by which the Pacific influences the eastern and western Indian Ocean. IPO-related anomalies from the Pacific propagate mainly through oceanic pathways in the Maritime Continent to impact the eastern Indian Ocean. By contrast, in the western Indian Ocean, the IPO induces wind-driven Ekman pumping in the central Indian Ocean via the atmospheric bridge, which in turn modifies conditions in the southwestern Indian Ocean via westward-propagating Rossby waves. To confirm this, a linear Rossby wave model is forced with wind stresses and eastern boundary conditions based on reanalyses. This linear model skillfully reproduces observed sea surface height anomalies and highlights both the oceanic connection in the eastern Indian Ocean and the role of wind-driven Ekman pumping in the west. These findings are also reproduced by OGCM hindcast experiments forced by interannual atmospheric boundary conditions applied only over the Pacific and Indian Oceans, respectively.

Description: Downward wave coupling occurs when an upward propagating planetary wave from the troposphere decelerates the flow in the upper stratosphere, and forms a downward reflecting surface that redirects waves back to the troposphere. To test this mechanism and potential factors influencing the downward wave coupling, three 145-year sensitivity simulations with NCAR’s Community Earth System Model (CESM-WACCM), a state-of-the-art high-top chemistry-climate model, are analyzed. The results show that the QBO and SST variability significantly impact downward wave coupling. Without the QBO, the occurrence of downward wave coupling is significantly suppressed. In contrast, stronger and more persistent downward wave coupling occurs when SST variability is excluded. The above influence on the occurrence of downward wave coupling is mostly due to a direct influence of the QBO and SST variability on stratospheric planetary wave source and propagation. The strengths of the tropospheric circulation and surface responses to a given downward wave coupling event, however, behave differently. The surface anomaly is significantly weaker (stronger) in the experiment with fixed SSTs (without QBO), even though the statistical signal of downward coupling is strongest (weakest) in this experiment. This apparent mismatch is explained by the differences in the strength of the synoptic-scale eddy-mean flow feedback and the possible contribution of SST anomalies in the North Atlantic during DWC event. The weaker synoptic-scale eddy-mean flow feedback, and the absence of the positive NAO-related SST-tripole pattern in the fixed SST experiment are consistent with a weaker tropospheric response in this experiment. The results highlight the importance of synoptic-scale eddies in setting the tropospheric response to downward wave coupling.

Description: The presence of sea-ice leads represents a key feature of the Arctic sea ice cover. Leads promote the flux of sensible and latent heat from the ocean to the cold winter atmosphere and are thereby crucial for air-sea-ice-ocean interactions. We here apply a binary segmentation procedure to identify leads from MODIS thermal infrared imagery on a daily time scale. The method separates identified leads into two uncertainty categories, with the high uncertainty being attributed to artifacts that arise from warm signatures of unrecognized clouds. Based on the obtained lead detections, we compute quasi-daily pan-Arctic lead maps for the months of January to April, 2003–2015. Our results highlight the marginal ice zone in the Fram Strait and Barents Sea as the primary region for lead activity. The spatial distribution of the average pan-Arctic lead frequencies reveals, moreover, distinct patterns of predominant fracture zones in the Beaufort Sea and along the shelf-breaks, mainly in the Siberian sector of the Arctic Ocean as well as the well-known polynya and fast-ice locations. Additionally, a substantial inter-annual variability of lead occurrences in the Arctic is indicated.

Description: There is evidence that the strengthened stratospheric westerlies arising from the Antarctic ozone hole–induced cooling cause a polar mesospheric warming and a subsequent cooling in the lower thermosphere. While previous studies focus on the role of nonresolved (gravity) wave drag filtering, here the role of resolved (planetary) wave drag and radiative forcing on the Antarctic mesosphere and lower thermosphere (MLT) is explored in detail. Using simulations with NCAR’s Community Earth System Model, version 1 (Whole Atmosphere Community Climate Model) [CESM1(WACCM)], it is found that in late spring and early summer the anomalous polar mesospheric warming induced by easterly nonresolved wave drag is dampened by anomalous dynamical cooling induced by westerly resolved wave drag. This resolved wave drag is attributed to planetary-scale wave (k = 1–3) activity, which is generated in situ as a result of increased instability of the summer mesospheric easterly jet induced by the ozone hole. On the other hand, the anomalous cooling in the polar lower thermosphere induced by westerly nonresolved wave drag is enhanced by anomalous dynamical cooling due to westerly resolved wave drag. In addition, radiative effects from increased greenhouse gases during the ozone hole period contribute partially to the cooling in the polar lower thermosphere. The polar MLT temperature response to the Antarctic ozone hole is, through thermal wind balance, accompanied by the downward migration of anomalous zonal-mean wind from the lower thermosphere to the stratopause. The results highlight that a proper accounting of both dynamical and radiative effects is required in order to correctly attribute the causes of the polar MLT response to the Antarctic ozone hole.

Description: Sharing and secondary analysis of data have become increasingly important for research. Especially in geography, the collection of digital data has grown due to technological changes. Responsible handling and proper documentation of research data have therefore become essential for funders, publishers and higher education institutions. To achieve this goal, universities offer support and training in research data management. This article presents the experiences of a pilot workshop in research data management, especially for geographers. A discipline-specific approach to research data management training is recommended. The focus of this approach increases researchers’ interest and allows for more specific guidance. The instructors identified problems and challenges of research data management for geographers. In regards to training, the communication of benefits and reaching the target groups seem to be the biggest challenges. Consequently, better incentive structures as well as communication channels have to be established.

Description: We perform eddy-resolving and high-vertical-resolution numerical simulations of the circulation in an idealized equatorial Atlantic Ocean in order to explore the formation of the deep equatorial circulation (DEC) in this basin. Unlike in previous studies, the deep equatorial intraseasonal variability (DEIV) that is believed to be the source of the DEC is generated internally by instabilities of the upper ocean currents. Two main simulations are discussed: Solution 1, configured with a rectangular basin and with wind forcing that is zonally and temporally uniform; and Solution 2, with realistic coastlines and with an annual cycle of wind forcing varying zonally. Somewhat surprisingly, Solution 1 produces the more realistic DEC: The large-vertical-scale currents (Equatorial Intermediate Currents or EICs) are found over a large zonal portion of the basin, and the small-vertical-scale equatorial currents (Equatorial Deep Jets or EDJs) form low-frequency, quasi-resonant, baroclinic equatorial basin modes with phase propagating mostly downward, consistent with observations. We demonstrate that both types of currents arise from the rectification of DEIV, consistent with previous theories. We also find that the EDJs contribute to maintaining the EICs, suggesting that the nonlinear energy transfer is more complex than previously thought. In Solution 2, the DEC is unrealistically weak and less spatially coherent than in the first simulation probably because of its weaker DEIV. Using intermediate solutions, we find that the main reason for this weaker DEIV is the use of realistic coastlines in Solution 2. It remains to be determined, what needs to be modified or included to obtain a realistic DEC in the more realistic configuration.

Description: A yet unexplained drift of (some) oxygen optodes during storage/transport and thus significant deviations from factory/laboratory calibrations have been a major handicap for autonomous oxygen observations. Optode drift appears to be systematic and is predominantly a slope effect due to reduced oxygen sensitivity. A small contribution comes from a reduced luminophore lifetime, which causes a small positive offset. A reliable in situ reference is essential to correct such a drift. Traditionally, this called for a ship-based reference cast, which poses some challenges for opportunistic float deployments. This study presents an easily implemented alternative using near-surface/in-air measurements of an Aanderaa optode on a 10-cm stalk and compares it to the more traditional approaches (factory, laboratory, and in situ deployment calibration). In-air samples show a systematic bias depending on the water saturation, which is likely caused by occasional submersions of the standard-height stalk optode. Linear regression of measured in-air supersaturation against in-water supersaturation (using ancillary meteorological data to define the saturation level) robustly removes this bias and thus provides a precise (0.2%) and accurate (1%) in situ correction that is available throughout the entire instrument’s lifetime.

Description: An unusual polyketide with a new carbon skeleton, lindgomycin (1), and the recently described ascosetin (2) were extracted from mycelia and culture broth of different Lindgomycetaceae strains, which were isolated from a sponge of the Kiel Fjord in the Baltic Sea (Germany) and from the Antarctic. Their structures were established by spectroscopic means. In the new polyketide, two distinct domains, a bicyclic hydrocarbon and a tetramic acid, are connected by a bridging carbonyl. The tetramic acid substructure of compound 1 was proved to possess a unique 5-benzylpyrrolidine-2,4-dione unit. The combination of 5-benzylpyrrolidine-2,4-dione of compound 1 in its tetramic acid half and 3-methylbut-3-enoic acid pendant in its decalin half allow the assignment of a new carbon skeleton. The new compound 1 and ascosetin showed antibiotic activities with IC50 value of 5.1 (±0.2) µM and 3.2 (±0.4) μM, respectively, against methicillin-resistant Staphylococcus aureus.

Description: Predictability on seasonal time scales over the North Atlantic–Europe region is assessed using a seasonal prediction system based on an initialized version of the Max Planck Institute Earth System Model (MPI-ESM). For this region, two of the dominant predictors on seasonal time scales are El Niño–Southern Oscillation (ENSO) and sudden stratospheric warming (SSW) events. Multiple studies have shown a potential for improved North Atlantic predictability for either predictor. Their respective influences are however difficult to disentangle, since the stratosphere is itself impacted by ENSO. Both El Niño and SSW events correspond to a negative signature of the North Atlantic Oscillation (NAO), which has a major influence on European weather. This study explores the impact on Europe by separating the stratospheric pathway of the El Niño teleconnection. In the seasonal prediction system, the evolution of El Niño events is well captured for lead times of up to 6 months, and stratospheric variability is reproduced with a realistic frequency of SSW events. The model reproduces the El Niño teleconnection through the stratosphere, involving a deepened Aleutian low connected to a warm anomaly in the northern winter stratosphere. The stratospheric anomaly signal then propagates downward into the troposphere through the winter season. Predictability of 500-hPa geopotential height over Europe at lead times of up to 4 months is shown to be increased only for El Niño events that exhibit SSW events, and it is shown that the characteristic negative NAO signal is only obtained for winters also containing major SSW events for both the model and the reanalysis data.

Description: Classical theory concerning theEliassen–Palmrelation is extended in this study to allowfor a unified treatment of midlatitude inertia–gravity waves (MIGWs), midlatitude Rossby waves (MRWs), and equatorial waves (EQWs). A conservation equation for what the authors call the impulse-bolus (IB) pseudomomentum is useful, because it is applicable to ageostrophic waves, and the associated three-dimensional flux is parallel to the direction of the group velocity of MRWs. The equation has previously been derived in an isentropic coordinate system or a shallow-water model. The authors make an explicit comparison of prognostic equations for the IB pseudomomentum vector and the classical energy-based (CE) pseudomomentum vector, assuming inviscid linear waves in a sufficiently weak mean flow, to provide a basis for the former quantity to be used in an Eulerian time-mean (EM) framework. The authors investigate what makes the three-dimensional fluxes in the IB and CE pseudomomentum equations look in different directions. It is found that the two fluxes are linked by a gauge transformation, previously unmentioned, associated with a divergence-form wave-induced pressure L. The quantity L vanishes for MIGWs and becomes nonzero for MRWs and EQWs, and it may be estimated using the virial theorem. Concerning the effect of waves on the mean flow, L represents an additional effect in the pressure gradient term of both (the three-dimensional versions of) the transformed EM momentum equations and the merged form of the EMmomentumequations, the latter of which is associated with the nonacceleration theorem.

Description: [in “State of the Climate in 2014” : Special Supplement to the Bulletin of the American Meteorological Society Vol. 96, No. 7, July 2015]

Description: Atmospheric deposition contributes potentially significant amounts of the nutrients iron, nitrogen and phosphorus (via mineral dust and anthropogenic aerosols) to the oligotrophic tropical North Atlantic Ocean. Transport pathways, deposition processes and source strengths contributing to this atmospheric flux are all highly variable in space and time. Atmospheric sampling was conducted during 28 research cruises through the Eastern Tropical North Atlantic (ETNA) over a 12 year period and a substantial dataset of measured concentrations of nutrients and trace metals in aerosol and rainfall over the region was acquired. This database was used to quantify (on a spatial- and seasonal-basis) the atmospheric input of ammonium, nitrate, soluble phosphorus and soluble and total iron, aluminium and manganese to the ETNA. The magnitude of atmospheric input varies strongly across the region, with high rainfall rates associated with the Inter-tropical Convergence Zone contributing to high wet deposition fluxes in the south, particularly for soluble species. Dry deposition fluxes of species associated with mineral dust exhibited strong seasonality, with highest fluxes associated with winter-time low-level transport of Saharan dust. Overall (wet plus dry) atmospheric inputs of soluble and total trace metals were used to estimate their soluble fractions. These also varied with season and were generally lower in the dry north than in the wet south. The ratio of ammonium plus nitrate to soluble iron in deposition to the ETNA was lower than the N:Fe requirement for algal growth in all cases, indicating the importance of the atmosphere as a source of excess iron.

Description: The transport of dissolved oxygen (O2) from the surface ocean into the interior is a critical process sustaining aerobic life in mesopelagic ecosystems, but its rates and sensitivity to climate variations are poorly understood. Using a circulation model constrained to historical variability by assimilation of observations, we show that the North Pacific thermocline effectively takes up O2 primarily by expanding the area through which O2-rich mixed layer water is detrained into the thermocline. The outcrop area during the critical winter season varies in concert with the Pacific Decadal Oscillation (PDO). When the central North Pacific Ocean is in a cold phase, the winter outcrop window for the Central Mode Water class (CMW; a neutral density range of γ = 25.6 - 26.6) expands southward allowing more O2-rich surface water to enter the ocean’s interior. An increase in volume flux of water to the CMW density class is partly compensated by a reduced supply to the shallower densities of Subtropical Mode Water (γ = 24.0 - 25.5). The thermocline has become better oxygenated since the 1980s due partly to strong O2 uptake. Positive O2 anomalies appear first near the outcrop and subsequently downstream in the subtropical gyre. In contrast to the O2 variations within the ventilated thermocline, observed O2 in Intermediate Water (density range of γ = 26.7 – 27.2) shows a declining trend over the past half-century, a trend not explained by the open ocean water mass formation rate.

Description: Several acoustic and optical techniques have been used for characterizing natural and anthropogenic gas leaks (carbon dioxide, methane) from the ocean floor. Here, single-camera based methods for bubble stream observation have become an important tool, as they help estimating flux and bubble sizes under certain assumptions. However, they record only a projection of a bubble into the camera and therefore cannot capture the full 3D shape, which is particularly important for larger, non-spherical bubbles. The unknown distance of the bubble to the camera (making it appear larger or smaller than expected) as well as refraction at the camera interface introduce extra uncertainties. In this article, we introduce our wide baseline stereo-camera deep-sea sensor bubble box that overcomes these limitations, as it observes bubbles from two orthogonal directions using calibrated cameras. Besides the setup and the hardware of the system, we discuss appropriate calibration and the different automated processing steps deblurring, detection, tracking, and 3D fitting that are crucial to arrive at a 3D ellipsoidal shape and rise speed of each bubble. The obtained values for single bubbles can be aggregated into statistical bubble size distributions or fluxes for extrapolation based on diffusion and dissolution models and large scale acoustic surveys. We demonstrate and evaluate the wide baseline stereo measurement model using a controlled test setup with ground truth information.

Description: This study investigates the interaction of the Quasi-Biennial Oscillation (QBO) and the El Niño-Southern Oscillation (ENSO) in the troposphere separately for the North Pacific and North Atlantic region. Three 145-year model simulations with NCAR’s Community Earth Sytem Model (CESM-WACCM) are analyzed where only natural and no anthropogenic forcings are considered. These long simulations allow us to obtain statistically reliable results from an exceptional large number of cases for each combination of the QBO (westerly and easterly) and ENSO phases (El Niño and La Niña). Two different analysis methods were applied to investigate where nonlinearity might play a role in QBO-ENSO interactions. The analyses reveal that the stratospheric equatorial QBO anomalies extend down to the troposphere over the North Pacific during Northern hemisphere winter only during La Niña and not during El Niño events. The Aleutian low is deepened during QBO westerly (QBOW) as compared to QBO easterly (QBOE) conditions, and the North Pacific subtropical jet is shifted northward during La Niña. In the North Atlantic, the interaction of QBOW with La Niña conditions (QBOE with El Niño) results in a positive (negative) North Atlantic Oscillation (NAO) pattern. For both regions, nonlinear interactions between the QBO and ENSO might play a role. The results provide potential to enhance the skill of tropospheric seasonal predictions in the North Atlantic and North Pacific region.

Description: We investigated the effect of hydrostatic pressure of up to 6000 dbar on Aanderaa and Sea-Bird oxygen optodes both in the laboratory and in the field. The overall pressure response is a reduction in the O2 reading by 3 – 4 % per 1000 dbar which is closely linear with pressure and increases with temperature. Closer inspection reveals two superimposed processes with opposite effect: an O2-independent pressure response on the luminophore which increases optode O2 readings and an O2-dependent change in luminescence quenching which decreases optode O2 readings. The latter process dominates and is mainly due to a shift in the equilibrium between sensing membrane and sea water under elevated pressures. If only the dominant O2-dependent process is considered, Aanderaa and Sea-Bird optodes differ in their pressure response. Compensation of the O2-independent process, however, yields a uniform O2 dependence for Aanderaa optodes with standard foil and fast-response foil as well as Sea-Bird optodes. A new scheme to calculate optode O2 from raw data is proposed to account for the two processes. The overall uncertainty of the optode pressure correction amounts to 0.3 % per 1000 dbar, mainly due to variability between sensors.

Description: Antifungal bioactivity-guided fractionation of the organic extract of the sponge Polymastia boletiformis, collected from the west coast of Ireland, led to the isolation of two new sulfated steroid-amino acid conjugates (1 and 2). Extensive 1D and 2D NMR analyses in combination with quantum mechanical calculations of the electronic circular dichroism (ECD) spectra, optical rotation, and 13C chemical shifts were used to establish the chemical structures of 1 and 2. Both compounds exhibited moderate antifungal activity against Cladosporium cucumerinum, while compound 2 was also active against Candida albicans. Marine natural products containing steroidal and amino acid constituents are extremely rare in nature.

Description: The upper tropical Atlantic Ocean has markedly warmed since the 1960s. It has been shown that this warming was not due to local heat fluxes, and that the trade winds that drive the coastal and equatorial upwelling have intensified rather than weakened. Remote forcing might thus have played an important role. Here model experiments are used to investigate the contribution from an increased inflow of warm Indian Ocean water through Agulhas leakage. A high-resolution hindcast experiment with interannually varying forcing for the time period 1948 to 2007, in which Agulhas leakage increases by about 45% from the 1960s to the early 2000s, reproduces the observed warming trend. To tease out the role of Agulhas leakage, a sensitivity experiment designed to only increase Agulhas leakage is used. Compared to a control simulation it shows a pronounced warming in the upper tropical Atlantic Ocean. A Lagrangian trajectory analysis confirms that a significant portion of Agulhas leakage water reaches the upper 300m of the tropical Atlantic Ocean within two decades, and that the tropical Atlantic warming in the sensitivity experiment is mainly due to water of Agulhas origin. Therefore, it is suggested that the increased trade winds since the 1960s favor upwelling of warmer subsurface waters, which in parts originate from the Agulhas, leading to higher SSTs in the tropics

Description: Underwater photogrammetry and in particular systematic visual surveys of the deep sea are by far less developed than similar techniques on land or in space. The main challenges are the rough conditions with extremely high pressure, the accessibility of target areas (container and ship deployment of robust sensors, then diving for hours to the ocean floor), and the limitations of localization technologies (no GPS). The absence of natural light complicates energy budget considerations for deep diving flash-equipped drones. Refraction effects influence geometric image formation considerations with respect to field of view and focus, while attenuation and scattering degrade the radiometric image quality and limit the effective visibility. As an improvement on the stated issues, we present an AUV-based optical system intended for autonomous visual mapping of large areas of the seafloor (square kilometers) in up to 6000 m water depth. We compare it to existing systems and discuss tradeoffs such as resolution vs. mapped area and show results from a recent deployment with 90,000 mapped square meters of deep ocean floor.

Description: Filamentous fungi are well known for their capability of producing antibiotic natural products. Recent studies have demonstrated the potential of antimicrobials with vast chemodiversity from marine fungi. Development of such natural products into lead compounds requires sustainable supply. Marine biotechnology can significantly contribute to the production of new antibiotics at various levels of the process chain including discovery, production, downstream processing, and lead development. However, the number of biotechnological processes described for large-scale production from marine fungi is far from the sum of the newly-discovered natural antibiotics. Methods and technologies applied in marine fungal biotechnology largely derive from analogous terrestrial processes and rarely reflect the specific demands of the marine fungi. The current developments in metabolic engineering and marine microbiology are not yet transferred into processes, but offer numerous options for improvement of production processes and establishment of new process chains. This review summarises the current state in biotechnological production of marine fungal antibiotics and points out the enormous potential of biotechnology in all stages of the discovery-to-development pipeline. At the same time, the literature survey reveals that more biotechnology transfer and method developments are needed for a sustainable and innovative production of marine fungal antibiotics.

Description: During the past decades, tremendous advances have been made in the possibilities to study the diversity of microbial communities in the environment. The development of methods to study these communities on the basis of 16S rRNA gene sequences analysis was a first step into the molecular analysis of environmental communities and the study of biodiversity in natural habitats. A new dimension in this field was reached with the introduction of functional genes of ecological importance and the establishment of genetic tools to study the diversity of functional microbial groups and their responses to environmental factors. Functional gene approaches are excellent tools to study the diversity of a particular function and to demonstrate changes in the composition of prokaryote communities contributing to this function. The phylogeny of many functional genes largely correlates with that of the 16S rRNA gene, and microbial species may be identified on the basis of functional gene sequences. Functional genes are perfectly suited to link culture-based microbiological work with environmental molecular genetic studies. In this review, the development of functional gene studies in environmental microbiology is highlighted with examples of genes relevant for important ecophysiological functions. Examples are presented for bacterial photosynthesis and two types of anoxygenic phototrophic bacteria, with genes of the Fenna-Matthews-Olson-protein (fmoA) as target for the green sulfur bacteria and of two reaction center proteins (pufLM) for the phototrophic purple bacteria, with genes of adenosine-5′phosphosulfate (APS) reductase (aprA), sulfate thioesterase (soxB) and dissimilatory sulfite reductase (dsrAB) for sulfur oxidizing and sulfate reducing bacteria, with genes of ammonia monooxygenase (amoA) for nitrifying/ammonia-oxidizing bacteria, with genes of particulate nitrate reductase and nitrite reductases (narH/G, nirS, nirK) for denitrifying bacteria and with genes of methane monooxygenase (pmoA) for methane oxidizing bacteria.

Description: The properties and the production of new metabolites from the fungal strain LF657 isolated from the Herodotes Deep (2800 m depth) in the Mediterranean Sea are reported in this study. The new isolate was identified as Biscogniauxia mediterranea based on ITS1-5.8S-ITS2 and 28S rRNA gene sequences. A new isopyrrolonaphthoquinone with inhibitory activity against glycogen synthase kinase (GSK-3β) was isolated from this fungus. This is the first report of this class of compounds from a fungus isolated from a deep-sea sediment, as well as from a Biscogniauxia species.

Description: European Centre for Medium-Range Weather Forecasts (ECMWF) ERA-Interim reanalysis total precipitation estimates are validated against ten years of in situ precipitation measurements onboard of ships over the Baltic Sea. A statistical analysis for binary forecasts and mean rain rates derived from all data show a good agreement with observations. However, a closer look reveals an underestimation of ERA-Interim total precipitation in spring and an overestimation in autumn, obviously related to stability. Deriving stability and evaporation by a bulk flux scheme it could be shown, in fact, that ERA-Interim underestimates precipitation for conditions with low evaporation and strongly overestimates it for conditions with high evaporation. Since ERA-Interim surface fields become too dry with increasing evaporation compared to independent synoptic ship observations, uncertainties in the ECMWF convection scheme may possibly cause these biases in seasonal precipitation.

Description: Marine fungi represent a huge potential for new natural products and an increased number of new metabolites have become known over the past years, while much of the hidden potential still needs to be uncovered. Representative examples of biodiversity studies of marine fungi and of natural products from a diverse selection of marine fungi from the author's lab are highlighting important aspects of this research. If one considers the huge phylogenetic diversity of marine fungi and their almost ubiquitous distribution, and realizes that most of the published work on secondary metabolites of marine fungi has focused on just a few genera, strictly speaking Penicillium, Aspergillus and maybe also Fusarium and Cladosporium, the diversity of marine fungi is not adequately represented in investigations on their secondary metabolites and the less studied species deserve special attention. In addition to results on recently discovered new secondary metabolites of Penicillium species, the diversity of fungi in selected marine habitats is highlighted and examples of groups of secondary metabolites produced by representatives of a variety of different genera and their bioactivities are presented. Special focus is given to the production of groups of derivatives of metabolites by the fungi and to significant differences in biological activities due to small structural changes.

Description: The Equatorial Deep Jets (EDJs) are an ubiquitous feature of the equatorial oceans; in the Atlantic Ocean, they are the dominant mode of interannual variability of the zonal flow at intermediate depth. On the basis of more than 10 years of moored observations of zonal velocity at 23°W, the vertically propagating EDJs are best described as superimposed oscillations of the 13th to the 23th baroclinic modes with a dominant oscillation period for all modes of 1650 days. This period is close to the resonance period of the respective gravest equatorial basin mode for the dominant vertical modes 16 and 17. It is argued that since the equatorial basin mode is composed of linear equatorial waves, a linear reduced gravity model can be employed for each baroclinic mode, driven by spatially homogeneous zonal forcing oscillating with the EDJ period. The fit of the model solutions to observations at 23°W yields a basin wide reconstruction of the EDJs and the associated vertical structure of their forcing. From the resulting vertical profile of mean power input and vertical energy flux on the equator, it follows that the EDJs are locally maintained over a considerable depth range, from 500-2500 m, with the maximum power input and vertical energy flux at 1300 m. The strong dissipation closely ties the apparent vertical propagation of energy to the vertical distribution of power input and, together with the EDJs’ prevailing downward phase propagation, require the phase of the forcing of the EDJs to propagate downward.

Description: A German national project coordinates research on improving a global decadal climate prediction system for future operational use. MiKlip, an eight-year German national research project on decadal climate prediction, is organized around a global prediction system comprising the climate model MPI-ESM together with an initialization procedure and a model evaluation system. This paper summarizes the lessons learned from MiKlip so far; some are purely scientific, others concern strategies and structures of research that targets future operational use. Three prediction-system generations have been constructed, characterized by alternative initialization strategies; the later generations show a marked improvement in hindcast skill for surface temperature. Hindcast skill is also identified for multi-year-mean European summer surface temperatures, extra-tropical cyclone tracks, the Quasi-Biennial Oscillation, and ocean carbon uptake, among others. Regionalization maintains or slightly enhances the skill in European surface temperature inherited from the global model and also displays hindcast skill for wind-energy output. A new volcano code package permits rapid modification of the predictions in response to a future eruption. MiKlip has demonstrated the efficacy of subjecting a single global prediction system to a major research effort. The benefits of this strategy include the rapid cycling through the prediction-system generations, the development of a sophisticated evaluation package usable by all MiKlip researchers, and regional applications of the global predictions. Open research questions include the optimal balance between model resolution and ensemble size, the appropriate method for constructing a prediction ensemble, and the decision between full-field and anomaly initialization. Operational use of the MiKlip system is targeted for the end of the current decade, with a recommended generational cycle of two to three years.

Description: Lake Urmia, the second largest saline Lake on earth and a highly endangered ecosystem, is on the brink of a serious environmental disaster similar to the catastrophic death of the Aral Sea. Progressive drying has been observed during the last decade, causing dramatic changes to Lake Urmia’s surface and its regional water supplies. The present study aims to improve monitoring of spatiotemporal changes of Lake Urmia in the period 1975–2015 using the multi-temporal satellite altimetry and Landsat (5-TM, 7-ETM+ and 8-OLI) images. In order to demonstrate the impacts of climate change and human pressure on the variations in surface extent and water level, Lake Sevan and Van Lake with different characteristics were studied along with the Urmia Lake. Normalized Difference Water Index-Principal Components Index (NDWI-PCs), Normalized Difference Water Index (NDWI), Modified NDWI (MNDWI), Normalized Difference Moisture Index (NDMI), Water Ratio Index (WRI), Normalized Difference Vegetation Index (NDVI), Automated Water Extraction Index (AWEI), and MultiLayer Perceptron Neural Networks (MLP NNs) classifier were investigated for the extraction of surface water from Landsat data. The presented results revealed that MLP NNs has a better performance in the cases where the other models generate poor accuracy. The results show that the area of Lake Sevan and Van Lake have increased while the area of Lake Urmia has decreased by ~65.23% in the past decades, far more than previously reported (~25% to 50%). Urmia Lake’s shoreline has been receding severely between 2010 and 2015 with no sign of recovery, which has been partly blamed on prolonged droughts, aggressive regional water resources development plans, intensive agricultural activities, and anthropogenic changes to the system. The results also indicated that (among the proposed factors) changes in inflows due to overuse of surface water resources and constructing dams (mostly during 1995–2005) are the main reasons for Urmia Lake’s shoreline receding. The model presented in this manuscript can be used by managers as a decision support system to find the effects of building new dams or other infrastructures

Description: The glycogen-synthase-kinase 3 (GSK-3) is an important target in drug discovery. This enzyme is involved in the signaling pathways of type 2 diabetes, neurological disorders, cancer, and other diseases. Therefore, inhibitors of GSK-3 are promising drug candidates for the treatment of a broad range of diseases. Here we report pannorin (1), alternariol (2), and alternariol-9-methylether (3) to be promising inhibitors of the isoform GSK-3β showing sub-μM IC50 values. The in vitro inhibition is in the range of the known highly active GSK-3β inhibitor TDZD-8. Compounds 1–3 have a highly oxygenated benzocoumarin core structure in common, which suggests that this may be a new structural feature for efficient GSK-3β inhibition

Description: Latent heat fluxes (LHF) play an essential role in the global energy budget and are thus important for understanding the climate system. Satellite-based remote sensing permits a large-scale determination of LHF, which, amongst others, are based on near-surface specific humidity qa. However, the qa random retrieval error (Etot) remains unknown. Here, a novel approach is presented to quantify the error contributions to pixel-level qa of the Hamburg Ocean Atmosphere Parameters and Fluxes from Satellite (HOAPS, version 3.2) dataset. The methodology makes use of multiple triple collocation (MTC) analysis between 1995-2008 over the global ice-free oceans. Apart from satellite records, these datasets include selected ship records extracted from the Seewetteramt Hamburg (SWA) archive and the International Comprehensive Ocean-Atmosphere Data Set (ICOADS), serving as the in-situ ground reference. The MTC approach permits the derivation of Etot as the sum of model uncertainty EM and sensor noise EN, while random uncertainties due to in-situ measurement errors (Eins) and collocation (EC) are isolated concurrently. Results show an Etot average of 1.1 ± 0.3 g kg-1, whereas the mean EC (Eins) is in the order of 0.5 ± 0.1 g kg-1 (0.5 ± 0.3 g kg-1). Regional analyses indicate a maximum of Etot exceeding 1.5 g kg-1 within humidity regimes of 12-17 g kg-1, associated with the single-parameter, multilinear qa retrieval applied in HOAPS. Multi-dimensional bias analysis reveals that global maxima are located off the Arabian Peninsula.

Description: Seasonal variability of the tropical Atlantic circulation is dominated by the annual cycle, but semi-annual variability is also pronounced, despite weak forcing at that period. Here we use multi-year, full-depth velocity measurements from the central equatorial Atlantic to analyze the vertical structure of annual and semi-annual variations of zonal velocity. A baroclinic modal decomposition finds that the annual cycle is dominated by the 4th mode and the semi-annual cycle by the 2nd mode. Similar local behavior is found in a high-resolution general circulation model. This simulation reveals that the annual and semi-annual cycles of the respective dominant baroclinic modes are associated with characteristic basin-wide structures. Using an idealized linear reduced-gravity model to simulate the dynamics of individual baroclinic modes, it is shown that the observed circulation variability can be explained by resonant equatorial basin modes. Corollary simulations of the reduced-gravity model with varying basin geometry (i.e. square basin versus realistic coastlines) or forcing (i.e. spatially uniform versus spatially variable wind) show a structural robustness of the simulated basin modes. A main focus of this study is the seasonal variability of the Equatorial Undercurrent (EUC) as identified in recent observational studies. Main characteristics of the observed EUC including seasonal variability of transport, core depth, and maximum core velocity can be explained by the linear superposition of the dominant equatorial basin modes as obtained from the reduced-gravity model.

Description: By performing two sets of high-resolution atmospheric general circulation model (AGCM) experiments, we find that the atmospheric response to a sea surface temperature (SST) anomaly in the extratropical North Pacific is sensitive to decadal variations of the background SST on which the SST anomaly is superimposed. The response in the first set of experiments, in which the SST anomaly is superimposed on the observed daily SST of 1981-1990, strongly differs from the response in the second experiment, in which the same SST anomaly is superimposed on the observed daily SST of 1991-2000. The atmospheric response over the North Pacific during 1981-1990 is eddy-mediated, equivalent barotropic and concentrated in the east. In contrast, the atmospheric response during 1991-2000 is weaker and strongest in the west. The results are discussed in terms of Rossby wave dynamics, with the proposed primary wave source switching from baroclinic eddy vorticity forcing over the eastern North Pacific in 1981-1990 to mean flow divergence over the western North Pacific in 1991-2000. The wave source changes are linked to the decadal reduction of daily SST variability over the eastern North Pacific and strengthening of the Oyashio Extension front over the western North Pacific. Thus, both daily and frontal aspects of the background SST variability in determining the atmospheric response to extratropical North Pacific SST anomalies are emphasized by our AGCM experiments.

Description: Variations in the global tropospheric zonal mean zonal wind ([U]) during boreal winter are investigated using Rotated Empirical Orthogonal Functions applied to monthly means. The first two modes correspond to the Northern and Southern Annular Mode and modes 3 and 4 represent variability in the tropics. One is related to El Niño Southern Oscillation and the other has variability that is highly correlated with the time series of [U] at 150 hPa between 5°N and 5°S ([U150]E) and is related to activity of the Madden-Julian Oscillation. The extratropical response to [U150]E is investigated using linear regressions of 500 hPa geopotential height onto the [U150]E time series. We make use of reanalysis data and of the ensemble mean output from a relaxation experiment using the European Center for Medium Range Weather Forecasts model in which the tropical atmosphere is relaxed towards reanalysis data. The regression analysis reveals that a shift of the Aleutian low and a wave train across the North Atlantic are associated with [U150]E. We find that the subtropical waveguides and the link between the North Pacific and North Atlantic are stronger during the easterly phase of [U150]E. The wave train over the North Atlantic is associated with Rossby wave sources over the subtropical North Pacific and North America. Finally, we show that a linear combination of both [U150]E and the Quasi Biennial Oscillation in the lower stratosphere can explain the circulation anomalies of the anomalously cold European winter of 1962/63 when both were in an extreme easterly phase.

Description: To investigate the influence of atmospheric model resolution on the representation of daily precipitation extremes, ensemble simulations with the atmospheric general circulation model ECHAM5 at different horizontal (T213 to T31) and vertical (L31 to L19) resolutions and forced with observed sea surface temperatures and sea ice concentrations have been carried out for 01/1982 - 09/2010. All results have been compared with the highest resolution, which has been validated against observations. Resolution affects both the representation of physical processes and the averaging of precipitation across grid boxes. The latter, in particular, smoothes out localized extreme events. These effects have been disentangled by averaging precipitation simulated at the highest resolution to the corresponding coarser grid. Extremes are represented by seasonal maxima, modeled by the generalized extreme value distribution. Effects of averaging and representation of physical processes vary with region and season. In the tropical summer hemisphere, extreme precipitation is reduced by up to 30% due to the averaging effect, and a further 65% owing to a coarser representation of physical processes. Towards mid- to high latitudes, the latter effect reduces to 20%; in the winter hemisphere it vanishes towards the poles. A strong drop is found between T106 and T63 in the convection dominated tropics. At the lowest resolution, northern hemisphere winter precipitation extremes, mainly caused by large scale weather systems, are in general represented reasonably well. Coarser vertical resolution causes an equatorward shift of maximum extreme precipitation in the tropics. The impact of vertical resolution on mean precipitation is less pronounced; for horizontal resolution it is negligible.

Description: The ultramafic-hosted Kairei vent field is located at 25°19′ S, 70°02′ E, towards the Northern end of segment 1 of the Central Indian Ridge (CIR-S1) at a water depth of ~2450 m. This study aims to investigate the distribution of trace elements among sulfide minerals of differing textures and to examine the possible factors controlling the trace element distribution in those minerals using LA-ICP-MS spot and line scan analyses. Our results show that there are distinct systematic differences in trace element distributions throughout the different minerals, as follows: (1) pyrite is divided into three types at Kairei, including early-stage euhedral pyrite (py-I), sub-euhedral pyrite (py-II), and colloform pyrite (py-III). Pyrite is generally enriched with Mo, Au, As, Tl, Mn, and U. Pyrite-I has high contents of Se, Te, Bi, and Ni when compared to the other types; py-II is enriched in Au relative to py-I and py-III, but poor in Ni; py-III is enriched in Mo, Pb, and U but is poor in Se, Te, Bi, and Au relative to py-I and py-II. Variations in the concentrations of Se, Te, and Bi in pyrite are most likely governed by the strong temperature gradient. There is generally a lower concentration of nickel than Co in pyrite, indicating that our samples precipitated at high temperatures, whereas the extreme Co enrichment is likely from a magmatic heat source combined with an influence of serpentinization reactions. (2) Chalcopyrite is characterized by high concentrations of Co, Se, and Te. The abundance of Se and Te in chalcopyrite over the other minerals is interpreted to have been caused by the high solubilities of Se and Te in the chalcopyrite lattice at high temperatures. The concentrations of Sb, As, and Au are relatively low in chalcopyrite from the Kairei vent field. (3) Sphalerite from Zn-rich chimneys is characterized by high concentrations of Sn, Co, Ga, Ge, Ag, Pb, Sb, As, and Cd, but is depleted in Se, Te, Bi, Mo, Au, Ni, Tl, Mn, Ba, V, and U in comparison with the other minerals. The high concentrations of Cd and Co are likely caused by the substitution of Cd2+ and Co2+ for Zn2+ in sphalerite. A high concentration of Pb accompanied by a high Ag concentration in sphalerite indicates that Ag occurs as Pb–Ag sulfosalts. Gold is generally low in sphalerite and strongly correlates with Pb, suggesting its presence in microinclusions of galena. The strong correlation of As with Ge in sphalerite from Kairei suggests that they might precipitate at medium temperatures and under moderately reduced conditions. (4) Bornite–digenite has very low concentrations of most trace elements, except for Co, Se, and Bi. Serpentinization in ultramafic-hosted hydrothermal systems might play an important role in Au enrichment in pyrite with low As contents. Compared to felsic-hosted seafloor massive sulfide deposits, sulfide minerals from ultramafic-hosted deposits show higher concentrations of Se and Te, but lower As, Sb, and Au concentrations, the latter often attributed to the contribution of magmatic volatiles. As with typical ultramafic-hosted seafloor massive sulfide deposits, Se enrichment in chalcopyrite from Kairei indicates that the primary factor that controls the Se enrichment is temperature-controlled mobility in vent fluids.

Description: An UPLC-qTOF-MS-based dereplication study led to the targeted isolation of seven bromoindole alkaloids from the sub-Arctic sponge Geodia barretti. This includes three new metabolites, namely geobarrettin A–C (1–3) and four known compounds, barettin (4), 8,9-dihydrobarettin (5), 6-bromoconicamin (6), and l-6-bromohypaphorine (7). The chemical structures of compounds 1–7 were elucidated by extensive analysis of the NMR and HRESIMS data. The absolute stereochemistry of geobarrettin A (1) was assigned by ECD analysis and Marfey’s method employing the new reagent l-Nα-(1-fluoro-2,4-dinitrophenyl)tryptophanamide (l-FDTA). The isolated compounds were screened for anti-inflammatory activity using human dendritic cells (DCs). Both 2 and 3 reduced DC secretion of IL-12p40, but 3 concomitantly increased IL-10 production. Maturing DCs treated with 2 or 3 before co-culturing with allogeneic CD4+ T cells decreased T cell secretion of IFN-γ, indicating a reduction in Th1 differentiation. Although barettin (4) reduced DC secretion of IL-12p40 and IL-10 (IC50 values 11.8 and 21.0 μM for IL-10 and IL-12p40, respectively), maturing DCs in the presence of 4 did not affect the ability of T cells to secrete IFN-γ or IL-17, but reduced their secretion of IL-10. These results indicate that 2 and 3 may be useful for the treatment of inflammation, mainly of the Th1 type.

Description: This study presents a novel approach, based on high-dimensionality hydro-acoustic data, for improving the performance of angular response analysis (ARA) on multibeam backscatter data in terms of acoustic class separation and spatial resolution. This approach is based on the hyper-angular cube (HAC) data structure which offers the possibility to extract one angular response from each cell of the cube. The HAC consists of a finite number of backscatter layers, each representing backscatter values corresponding to single-incidence angle ensonifications. The construction of the HAC layers can be achieved either by interpolating dense soundings from highly overlapping multibeam echo-sounder (MBES) surveys (interpolated HAC, iHAC) or by producing several backscatter mosaics, each being normalized at a different incidence angle (synthetic HAC, sHAC). The latter approach can be applied to multibeam data with standard overlap, thus minimizing the cost for data acquisition. The sHAC is as efficient as the iHAC produced by actual soundings, providing distinct angular responses for each seafloor type. The HAC data structure increases acoustic class separability between different acoustic features. Moreover, the results of angular response analysis are applied on a fine spatial scale (cell dimensions) offering more detailed acoustic maps of the seafloor. Considering that angular information is expressed through high-dimensional backscatter layers, we further applied three machine learning algorithms (random forest, support vector machine, and artificial neural network) and one pattern recognition method (sum of absolute differences) for supervised classification of the HAC, using a limited amount of ground truth data (one sample per seafloor type). Results from supervised classification were compared with results from an unsupervised method for inter-comparison of the supervised algorithms. It was found that all algorithms (regarding both the iHAC and the sHAC) produced very similar results with good agreement (〉0.5 kappa) with the unsupervised classification. Only the artificial neural network required the total amount of ground truth data for producing comparable results with the remaining algorithms.

Description: The metabolism of seaweeds depends on environmental parameters, the availability of nutrients, and biotic/abiotic stresses; therefore, their chemical composition fluctuates throughout the year. This study investigated seasonal variations in the metabolome of the Baltic Sea brown alga Fucus vesiculosus and its potential relation to the bioactivity profile. By using a definitive screening design (DSD) combined with pressurised liquid extraction (PLE), an optimised protocol was developed to extract algal biomass monthly for a full calendar year. An untargeted metabolomics approach using ultra-high performance liquid chromatography-tandem mass spectrometry (UPLC-MSn)-based molecular networking and manual dereplication was employed. The extracts were simultaneously screened for their in vitro antimicrobial, anticancer/apoptotic, and free radical scavenging activities. 44 compounds were putatively dereplicated in the metabolome. Many compounds were found to vary with the sampling month; phlorotannin total ion count (TIC) was highest in summer, whilst chlorophylls, lipids, and carotenoids peaked in winter and spring. The greatest radical scavenging and apoptotic activities against pancreas cancer cells observed in the summer months were attributed to high phlorotannin TIC. Methicillin-resistant Staphylococcus aureus (MRSA) inhibitory activity was produced year-round without a clear seasonal trend. This is the first study applying DSD-based optimised PLE extraction combined with a metabolome analysis of F. vesiculosus for the identification of seasonal variations in both metabolome and bioactivity.

Description: Many scientific institutions are faced with the question of how they should inform their scientists and scientific coordinators about the option of publishing open access. This task is one that libraries have taken upon themselves: libraries are familiar with the market participants and have years of experience in teaching information and publication literacy. This case report looks at two approaches taken by the Central Library of Forschungszentrum Jülich in 2017. It highlights the motivation,strategy,resourcesandimplementation,aswellasthefirstevaluationofbothapproaches. ThefirstapproachwasaredesignofthetrainingcoursesofferedbytheCentralLibrarywithafocuson the target groups and new contents. The second approach was implemented as part of International Open Access Week and involved offering an information event tailored to each scientific institute. Theeventwascustomizedtomeettheneedsofthetargetgroupdefinedbyeachinstitute,theinstitute itself, and was organized individually. As a result of these efforts, the open access rate increased over the last few months and at 48% open access in 2017, Forschungszentrum Jülich is well on its way to achieving the open access goals set by the Helmholtz Association.

Description: A simple analytical model of the atmospheric boundary layer (ABL) coupled to sea ice is presented. It describes clear-sky cooling over sea ice during polar night in the presence of leads. The model solutions show that the sea ice concentration and wind speed have a strong impact on the thermal regime over sea ice. Leads cause both a warming of the ABL and an increase of stability over sea ice. The model describes a sharp ABL transition from a weakly stable coupled state to a strongly stable decoupled state when wind speed is decreasing. The threshold value of the transition wind speed is a function of sea ice concentration. The decoupled state is characterized by a large air–surface temperature difference over sea ice, which is further increased by leads. In the coupled regime, air and surface temperatures increase almost linearly with wind speed due to warming by leads and also slower cooling of the ABL. The cooling time scale shows a nonmonotonic dependency on wind speed, being lowest for the threshold value of wind speed and increasing for weak and strong winds. Theoretical solutions agree well with results of a more realistic single-column model and with observations performed at the three Russian “North Pole” drifting stations (NP-35, -37, and -39) and at the Surface Heat Budget of the Arctic Ocean ice camp. Both modeling results and observations show a strong implicit dependency of the net longwave radiative flux at the surface on wind speed.

Description: Arctic and subarctic regions are sensitive to climate change and, reversely, provide dramatic feedbacks to the global climate. With a focus on discovering paleoclimate and paleoceanographic evolution in the Arctic and Northwest Pacific Oceans during the last 20,000 years, we proposed this German–Sino cooperation program according to the announcement “Federal Ministry of Education and Research (BMBF) of the Federal Republic of Germany for a German–Sino cooperation program in the marine and polar research”. Our proposed program integrates the advantages of the Arctic and Subarctic marine sediment studies in AWI (Alfred Wegener Institute) and FIO (First Institute of Oceanography). For the first time, the collection of sediment cores can cover all climatological key regions in the Arctic and Northwest Pacific Oceans. Furthermore, the climate modeling work at AWI enables a “Data-Model Syntheses”, which are crucial for exploring the underlying mechanisms of observed changes in proxy records.

Description: Gap flows and the stable boundary layer were studied in northwest Greenland during the aircraft-based Investigation of Katabatic Winds and Polynyas during Summer (IKAPOS) experiment in June 2010. The measurements were performed using the research aircraft POLAR 5 of Alfred Wegener Institute (AWI; Bremerhaven). Besides navigational and basic meteorological instrumentation, the aircraft was equipped with radiation and surface temperature sensors and a turbulence measurement system. In the area of Smith Sound at the southern end of the Nares Strait, a stable, but fully turbulent, boundary layer with strong winds of up to 22 m s−1 was found during conditions of synoptically induced northerly winds through the Nares Strait. Strong surface inversions were present in the lowest 100–200 m. As a consequence of channeling effects, a well-pronounced low-level jet system was documented for each of four flights. The wind maximum is located at 20–50-km distance from the exit of Smith Sound. The 3D boundary layer structure past this gap is studied in detail. The channeling process is consistent with gap flow theory. The flow through the gap and over the surrounding mountains leads to the lowering of isotropic surfaces and the acceleration of the flow. The orographically channeled flow through Smith Sound plays a key role for the formation of the North Water polynya being the largest ice-producing polynya in the Arctic.

Description: This study analyzes the response of the Atlantic meridional overturning circulation (AMOC) to different CO2 concentrations and two ice sheet configurations in simulations with the coupled climate model MPI-ESM. With preindustrial (PI) ice sheets, there are two different AMOC states within the studied CO2 range: one state with a strong and deep upper overturning cell at high CO2 concentrations and one state with a weak and shallow upper cell at low CO2 concentrations. Changes in AMOC variability with decreasing CO2 indicate two stability thresholds. The strong state is stable above the first threshold near 217 ppm, and the weak state is stable below the second threshold near 190 ppm. Between the two thresholds, both states are marginally unstable, and the AMOC oscillates between them on millennial time scales. The weak AMOC state is stable when Antarctic Bottom Water becomes dense and salty enough to replace North Atlantic Deep Water (NADW) in the deep North Atlantic and when the density gain over the North Atlantic becomes too weak to sustain continuous NADW formation. With Last Glacial Maximum (LGM) ice sheets, the density gain over the North Atlantic and the northward salt transport are enhanced with respect to the PI ice sheet case. This enables active NADW formation and a strong AMOC for the entire range of studied CO2 concentrations. The AMOC variability indicates that the simulated AMOC is far away from a stability threshold with LGM ice sheets. The nonlinear relationship among AMOC, CO2, and prescribed ice sheets provides an explanation for the large intermodel spread of AMOC states found in previous coupled LGM simulations.

Description: Major sudden stratospheric warmings (SSWs) are extreme events during boreal winter, which not only impact tropospheric weather up to three months but also can influence oceanic variability through wind stress and heat flux anomalies. In the North Atlantic region, SSWs have the potential to modulate deep convection in the Labrador Sea and thereby the strength of the Atlantic meridional overturning circulation. The impact of SSWs on the Northern Hemisphere surface climate is investigated in two coupled climate models: a stratosphere-resolving (high top) and a non-stratosphere-resolving (low top) model. In both configurations, a robust link between SSWs and a negative NAO is detected, which leads to shallower-than-normal North Atlantic mixed layer depth. The frequency of SSWs and the persistence of this link is better captured in the high-top model. Significant differences occur over the Pacific region, where an unrealistically persistent Aleutian low is observed in the low-top configuration. An overrepresentation of SSWs during El Nino conditions in the low-top model is the main cause for this artifact. Our results underline the importance of a proper representation of the stratosphere in a coupled climate model for a consistent surface response in both the atmosphere and the ocean, which, among others, may have implications for oceanic deep convection in the subpolar North Atlantic.

Description: This article presents gas hydrate experimental measurements for mixtures containing methane (CH4), carbon dioxide (CO2) and nitrogen (N2) with the aim to better understand the impact of water (H2O) on the phase equilibrium. Some of these phase equilibrium experiments were carried out with a very high water-to-gas ratio that shifts the gas hydrate dissociation points to higher pressures. This is due to the significantly different solubilities of the different guest molecules in liquid H2O. A second experiment focused on CH4-CO2 exchange between the hydrate and the vapor phases at moderate pressures. The results show a high retention of CO2 in the gas hydrate phase with small pressure variations within the first hours. However, for our system containing 10.2 g of H2O full conversion of the CH4 hydrate grains to CO2 hydrate is estimated to require 40 days. This delay is attributed to the shrinking core effect, where initially an outer layer of CO2-rich hydrate is formed that effectively slows down the further gas exchange between the vapor phase and the inner core of the CH4-rich hydrate grain.

Description: Benthic storms are important for both the energy budget of the ocean and for sediment resuspension and transport. Using 30 years of output from a high-resolution model of the North Atlantic, it is found that most of the benthic storms in the model occur near the western boundary in association with the Gulf Stream and the North Atlantic Current, in regions that are generally co-located with the peak near-bottom eddy kinetic energy. A common feature are meander troughs in the near-surface jets that are accompanied by deep low pressure anomalies spinning up deep cyclones with near-bottom velocities of up to more than 0.5 m/s. A case study of one of these events shows the importance of both baroclinic and barotropic instability of the jet, with energy being extracted from the jet in the upstream part of the meander trough and partly returned to the jet in the downstream part of the meander trough. This motivates examining the 30-year time mean of the energy transfer from the (annual mean) background flow into the eddy kinetic energy. This quantity is shown to be co-located well with the region in which benthic storms and large increases in deep cyclonic relative vorticity occur most frequently, suggesting an important role for mixed barotropic-baroclinic instability driven cyclogenesis in generating benthic storms throughout the model simulation. Regions of largest energy transfer and most frequent benthic storms are found to be the Gulf Stream west of the New England Seamounts and the North Atlantic Current near Flemish Cap.

Description: The production of secondary metabolites by a new isolate of the purple sulfur bacterium Allochromatium vinosum, which had shown antibiotic activities during a preliminary study, revealed the production of several metabolites. Growth conditions suitable for the production of one of the compounds shown in the metabolite profile were established and compound 1 was purified. The molecular formula of compound 1 (C20H28O2) was determined by high resolution mass spectra, and its chemical structure by means of spectroscopic methods. The evaluation of these data revealed that the structure of the compound was identical to dehydroabietic acid, a compound known to be characteristically produced by conifer trees, but so far not known from bacteria, except cyanobacteria. The purified substance showed weak antibiotic activities against Bacillus subtilis and Staphylococcus lentus with IC50 values of 70.5 µM (±2.9) and 57.0 µM (±3.3), respectively.

Description: The decarbonisation of our energy supply is reliant on new technologies that are raw material intensive and will require a significant increase in the production of metals to sustain them. Ferromanganese (FeMn) crusts are seafloor precipitates, enriched in metals such as cobalt and tellurium, both of which have a predicted future demand above current production rates. In this study, we investigate the texture and composition of FeMn crusts on Tropic Seamount, a typical Atlantic guyot off the coast of western Africa, as a basis for assessing the future mineral resource potential of Atlantic Seamounts. The majority of the summit is flat and covered by FeMn crusts with average thicknesses of 3–4 cm. The crusts are characterized by two dominant textures consisting of either massive pillared growth or more chaotic, cuspate sections of FeMn oxides, with an increased proportion of detrital and organic material. The Fe, Mn, and Co contents in the FeMn oxide layers are not affected by texture. However, detrital material and bioclasts can form about 50% of cuspate areas, and the dilution effect of this entrained material considerably reduces the Fe, Mn, and Co concentrations if the bulk samples are analyzed. Whilst Tropic Seamount meets many of the prerequisites for a crust mining area, the thickness of the crusts and their average metal composition means extraction is unlikely to be viable in the near future. The ability to exploit more difficult terrains or multiple, closely spaced edifices would make economic feasibility more likely.

Description: This study analyzes the response of the Atlantic meridional overturning circulation (AMOC) to different CO2 concentrations and two ice sheet configurations in simulations with the coupled climate model MPI-ESM. With preindustrial (PI) ice sheets, there are two different AMOC states within the studied CO2 range: one state with a strong and deep upper overturning cell at high CO2 concentrations and one state with a weak and shallow upper cell at low CO2 concentrations. Changes in AMOC variability with decreasing CO2 indicate two stability thresholds. The strong state is stable above the first threshold near 217 ppm, and the weak state is stable below the second threshold near 190 ppm. Between the two thresholds, both states are marginally unstable, and the AMOC oscillates between them on millennial time scales. The weak AMOC state is stable when Antarctic Bottom Water becomes dense and salty enough to replace North Atlantic Deep Water (NADW) in the deep North Atlantic and when the density gain over the North Atlantic becomes too weak to sustain continuous NADW formation. With Last Glacial Maximum (LGM) ice sheets, the density gain over the North Atlantic and the northward salt transport are enhanced with respect to the PI ice sheet case. This enables active NADW formation and a strong AMOC for the entire range of studied CO2 concentrations. The AMOC variability indicates that the simulated AMOC is far away from a stability threshold with LGM ice sheets. The nonlinear relationship among AMOC, CO2, and prescribed ice sheets provides an explanation for the large intermodel spread of AMOC states found in previous coupled LGM simulations.

Description: The North Water (NOW) Polynya is a regularly-forming area of open-water and thin-ice, located between northwestern Greenland and Ellesmere Island (Canada) at the northern tip of Baffin Bay. Due to its large spatial extent, it is of high importance for a variety of physical and biological processes, especially in wintertime. Here, we present a long-term remote sensing study for the winter seasons 1978/1979 to 2014/2015. Polynya characteristics are inferred from (1) sea ice concentrations and brightness temperatures from passive microwave satellite sensors (Advanced Microwave Scanning Radiometer (AMSR-E and AMSR2), Scanning Multichannel Microwave Radiometer (SMMR), Special Sensor Microwave Imager/Sounder (SSM/I-SSMIS)) and (2) thin-ice thickness distributions, which are calculated using MODIS ice-surface temperatures and European Center for Medium-Range Weather Forecasts (ECMWF) atmospheric reanalysis data in a 1D thermodynamic energy-balance model. Daily ice production rates are retrieved for each winter season from 2002/2003 to 2014/2015, assuming that all heat loss at the ice surface is balanced by ice growth. Two different cloud-cover correction schemes are applied on daily polynya area and ice production values to account for cloud gaps in the MODIS composites. Our results indicate that the NOW polynya experienced significant seasonal changes over the last three decades considering the overall frequency of polynya occurrences, as well as their spatial extent. In the 1980s, there were prolonged periods of a more or less closed ice cover in northern Baffin Bay in winter. This changed towards an average opening on more than 85% of the days between November and March during the last decade. Noticeably, the sea ice cover in the NOW polynya region shows signs of a later-appearing fall freeze-up, starting in the late 1990s. Different methods to obtain daily polynya area using passive microwave AMSR-E/AMSR2 data and SSM/I-SSMIS data were applied. A comparison with MODIS data (thin-ice thickness ≤ 20 cm) shows that the wintertime polynya area estimates derived by MODIS are about 30 to 40% higher than those derived using the polynya signature simulation method (PSSM) with AMSR-E data. In turn, the difference in polynya area between PSSM and a sea ice concentration (SIC) threshold of 70% is fairly low (approximately 10%) when applied to AMSR-E data. For the coarse-resolution SSM/I-SSMIS data, this difference is much larger, particularly in November and December. Instead of a sea ice concentration threshold, the PSSM method should be used for SSM/I-SSMIS data. Depending on the type of cloud-cover correction, the calculated ice production based on MODIS data reaches an average value of 264.4 ± 65.1 km 3 to 275.7 ± 67.4 km 3 (2002/2003 to 2014/2015) and shows a high interannual variability. Our achieved long-term results underline the major importance of the NOW polynya considering its influence on Arctic ice production and associated atmosphere/ocean processes.

Description: Ocean Acidification (OA) represents a major field of research and increased efforts are being made to elucidate its repercussions on biota. Species survival is ensured by successful reproduction, which may be threatened under detrimental environmental conditions, such as OA acting in synergy with other climate change related stressors. Achieving successful gametogenesis, fertilization, and the development of larvae into healthy juveniles and adults is crucial for the perpetuation of species and, thus, ecosystems’ functionality. The considerable vulnerability of the abovementioned developmental stages to the adverse conditions that future OA may impose has been shown in many species, including sea urchins which are commonly used due to the feasibility of their maintenance in captivity and the great amount of gametes that a mature adult is able to produce. In the present review, the latest knowledge about the impact of OA on various stages of the life cycle of sea urchins is summarized with remarks on the possible impact of other stressors. The cellular physiology of the gametes before, at fertilization and, at early development, is extensively described with a focus on the complex enzymatic machinery and the intracellular pH (pHi) and Ca2+ homeostasis for their vulnerability when facing adverse conditions such as acidification, temperature variations, or hypoxia.

Description: Warm water of open ocean origin on the continental shelf of the Amundsen and Bellingshausen Seas causes the highest basal melt rates reported for Antarctic ice shelves with severe consequences for the ice shelf/ice sheet dynamics. Ice shelves fringing the broad continental shelf in the Weddell and Ross Seas melt at rates orders of magnitude smaller. However, simulations using coupled ice–ocean models forced with the atmospheric output of the HadCM3 SRES-A1B scenario run (CO2 concentration in the atmosphere reaches 700 ppmv by the year 2100 and stays at that level for an additional 100 years) show that the circulation in the southern Weddell Sea changes during the twenty-first century. Derivatives of Circumpolar Deep Water are directed southward underneath the Filchner–Ronne Ice Shelf, warming the cavity and dramatically increasing basal melting. To find out whether the open ocean will always continue to power the melting, the authors extend their simulations, applying twentieth-century atmospheric forcing, both alone and together with prescribed basal mass flux at the end of (or during) the SRES-A1B scenario run. The results identify a tipping point in the southern Weddell Sea: once warm water flushes the ice shelf cavity a positive meltwater feedback enhances the shelf circulation and the onshore transport of open ocean heat. The process is irreversible with a recurrence to twentieth-century atmospheric forcing and can only be halted through prescribing a return to twentieth-century basal melt rates. This finding might have strong implications for the stability of the Antarctic ice sheet.

Description: Modern volcano monitoring commonly involves Interferometric Synthetic Aperture Radar (InSAR) measurements to identify ground motions caused by volcanic activity. However, InSAR is largely affected by changes in atmospheric refractivity, in particular by changes which can be attributed to the distribution of water (H2O) vapor in the atmospheric column. Gas emissions from continuously degassing volcanoes contain abundant water vapor and thus produce variations in the atmospheric water vapor content above and downwind of the volcano, which are notably well captured by short-wavelength X-band SAR systems. These variations may in turn cause differential phase errors in volcano deformation estimates due to excess radar path delay effects within the volcanic gas plume. Inversely, if these radar path delay effects are better understood, they may be even used for monitoring degassing activity, by means of the precipitable water vapor (PWV) content in the plume at the time of SAR acquisitions, which may provide essential information on gas plume dispersion and the state of volcanic and hydrothermal activity. In this work we investigate the radar path delays that were generated by water vapor contained in the volcanic gas plume of the persistently degassing Láscar volcano, which is located in the dry Atacama Desert of Northern Chile. We estimate water vapor contents based on sulfur dioxide (SO2) emission measurements from a scanning UV spectrometer (Mini-DOAS) station installed at Láscar volcano, which were scaled by H2O/SO2 molar mixing ratios obtained during a multi-component Gas Analyzer System (Multi-GAS) survey on the crater rim of the volcano. To calculate the water vapor content in the downwind portion of the plume, where an increase of water vapor is expected, we further applied a correction involving estimation of potential evaporation rates of water droplets governed by turbulent mixing of the condensed volcanic plume with the dry atmosphere. Based on these estimates we obtain daily average PWV contents inside the volcanic gas plume of 0.2–2.5 mm equivalent water column, which translates to a slant wet delay (SWD) in DInSAR data of 1.6–20 mm. We used these estimates in combination with our high resolution TerraSAR-X DInSAR observations at Láscar volcano, in order to demonstrate the occurrence of repeated atmospheric delay patterns that were generated by volcanic gas emissions. We show that gas plume related refractivity changes are significant and detectable in DInSAR measurements. Implications are two-fold: X-band satellite radar observations also contain information on the degassing state of a volcano, while deformation signals need to be interpreted with care, which has relevance for volcano observations at Láscar and for other sites worldwide.

Description: Increasing atmospheric CO2 concentrations are resulting in a reduction in seawater pH, with potential detrimental consequences for marine organisms. Improved efforts are required to monitor the anthropogenically driven pH decrease in the context of natural pH variations. We present here a high resolution surface water pH data set obtained in summer 2011 in North West European Shelf Seas. The aim of our paper is to demonstrate the successful deployment of the pH sensor, and discuss the carbonate chemistry dynamics of surface waters of Northwest European Shelf Seas using pH and ancillary data. The pH measurements were undertaken using spectrophotometry with a Lab-on-Chip pH sensor connected to the underway seawater supply of the ship. The main processes controlling the pH distribution along the ship's transect, and their relative importance, were determined using a statistical approach. The pH sensor allowed 10 measurements h(-1) with a precision of 0.001 pH units and a good agreement with pH calculated from a pair of discretely sampled carbonate variables dissolved inorganic carbon (DIC), total alkalinity (TA) and partial pressure of CO2 (pCO(2)) (e.g., pH(DICpCO2)). For this summer cruise, the biological activity formed the main control on the pH distribution along the cruise transect. This study highlights the importance of high quality and high resolution pH measurements for the assessment of carbonate chemistry dynamics in marine waters.

Description: Optical communication promises to be a high-rate supplement for acoustic communication in short-range underwater applications. In the photic zone of oceanic and coastal waters, underwater optical communication systems are exposed by remaining sunlight. This ambient light generates additional noise in photodetectors, thus degrading system performance. This effect can be diminished by the use of optical filters. This paper investigates light field characteristics of different water types and potential interactions with optical underwater communication. A colored glass and different thin film bandpass filters are examined as filter/detector combinations under varying light and water conditions, and their physical constraints are depicted. This is underlined by various spectral measurements as well as optical signal-to-noise ratio calculations. The importance of matching the characteristics of the light emitting diode (LED) light source, the photodetector, and the filter on the ambient conditions using wider angle of incidents is emphasized.

Description: The eastern boundary region off Angola encompasses a highly productive ecosystem important for the food security of the coastal population. The fish-stock distribution, however, undergoes large variability on intraseasonal, interannual, and longer time scales. These fluctuations are partly associated with large-scale warm anomalies that are often forced remotely from the equatorial Atlantic and propagate southward, reaching the Benguela upwelling off Namibia. Such warm events, named Benguela Niños, occurred in 1995 and in 2011. Here we present results from an underexplored extensive in situ dataset that was analyzed in the framework of a capacity-strengthening effort. The dataset was acquired within the Nansen Programme executed by the Food and Agriculture Organization of the United Nations and funded by the Norwegian government. It consists of hydrographic and velocity data from the Angolan continental margin acquired biannually during the main downwelling and upwelling seasons over more than 20 years. The mean seasonal changes of the Angola Current from 6° to 17°S are presented. During austral summer the southward Angola Current is concentrated in the upper 150 m. It strengthens from north to south, reaching a velocity maximum just north of the Angola Benguela Front. During austral winter the Angola Current is weaker, but deeper reaching. While the southward strengthening of the Angola Current can be related to the wind forcing, its seasonal variability is most likely explained by coastally trapped waves. On interannual time scales, the hydrographic data reveal remarkable variability in subsurface upper-ocean heat content. In particular, the 2011 Benguela Niño was preceded by a strong subsurface warming of about 2 years’ duration.

Description: Large amounts of gas hydrate are present in marine sediments offshore Taitao Peninsula, near the Chile Triple Junction. Here, marine sediments on the forearc contain carbon that is converted to methane in a regime of very high heat flow and intense rock deformation above the downgoing oceanic spreading ridge separating the Nazca and Antarctic plates. This regime enables vigorous fluid migration. Here, we present an analysis of the spatial distribution, concentration, estimate of gas-phases (gas hydrate and free gas) and geothermal gradients in the accretionary prism, and forearc sediments offshore Taitao (45.5°–47° S). Velocity analysis of Seismic Profile RC2901-751 indicates gas hydrate concentration values 〈10% of the total rock volume and extremely high geothermal gradients (〈190 °C·km−1). Gas hydrates are located in shallow sediments (90–280 m below the seafloor). The large amount of hydrate and free gas estimated (7.21 × 1011 m3 and 4.1 × 1010 m3; respectively), the high seismicity, the mechanically unstable nature of the sediments, and the anomalous conditions of the geothermal gradient set the stage for potentially massive releases of methane to the ocean, mainly through hydrate dissociation and/or migration directly to the seabed through faults. We conclude that the Chile Triple Junction is an important methane seepage area and should be the focus of novel geological, oceanographic, and ecological research.

Description: Proxy data and observations suggest that large tropical volcanic eruptions induce a poleward shift of the North Atlantic jet stream in boreal winter. However, there is far from universal agreement in models on this effect and its mechanism, and the possibilities of a corresponding jet shift in the Southern Hemisphere or the summer season have received little attention. Using a hierarchy of simplified atmospheric models, this study examines the impact of stratospheric aerosol on the extratropical circulation over the annual cycle. In particular, the models allow the separation of the dominant shortwave (surface cooling) and longwave (stratospheric warming) impacts of volcanic aerosol. It is found that stratospheric warming shifts the jet poleward in both summer and winter hemispheres. The experiments cannot definitively rule out the role of surface cooling, but provide no evidence that it shifts the jet poleward. Further study with simplified models demonstrates that the response to stratospheric warming is remarkably generic and does not depend critically on the boundary conditions (e.g., the planetary wave forcing) or the atmospheric physics (e.g., the treatment of radiative transfer and moist processes). It does, however, fundamentally involve both zonal-mean and eddy circulation feedbacks. The timescales, seasonality, and structure of the response provide further insight into the mechanism, as well as its connection to modes of intrinsic natural variability. These findings have implications for the interpretation of comprehensive model studies and for post-volcanic prediction

Description: The presence of two known anthraquinones, Lupinacidin A and Galvaquinone B, which have antitumor activity, has been identified in the sea anemone (Gyractis sesere) from Easter Island. So far, these anthraquinones have been characterized from terrestrial and marine Actinobacteria only. In order to identify the anthraquinones producer, we isolated Actinobacteria associated with the sea anemone and obtained representatives of seven actinobacterial genera. Studies of cultures of these bacteria by HPLC, NMR, and HRLCMS analyses showed that the producer of Lupinacidin A and Galvaquinone B indeed was one of the isolated Actinobacteria. The producer strain, SN26_14.1, was identified as a representative of the genus Verrucosispora. Genome analysis supported the biosynthetic potential to the production of these compounds by this strain. This study adds Verrucosispora as a new genus to the anthraquinone producers, in addition to well-known species of Streptomyces and Micromonospora. By a cultivation-based approach, the responsibility of symbionts of a marine invertebrate for the production of complex natural products found within the animal’s extracts could be demonstrated. This finding re-opens the debate about the producers of secondary metabolites in sea animals. Finally, it provides valuable information about the chemistry of bacteria harbored in the geographically-isolated and almost unstudied, Easter Island

Description: With mining of seafloor massive sulfides (SMS) coming closer to reality, it is vital that we have a good understanding of the geochemistry of these occurrences and the potential toxicity impact associated with mining them. In this study, SMS samples from seven hydrothermal fields from various tectonic settings were investigated by in-situ microanalysis (electron microprobe (EMPA) and laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS)) to highlight the distribution of potentially-toxic trace elements (Cu, Zn, Pb, Mn, Cd, As, Sb, Co, Ni, Bi, Ag and Hg) within the deposits, their minerals and textures. We demonstrate that a combination of mineralogy, trace element composition and texture characterisation of SMS from various geotectonic settings, when considered along with our current knowledge of oxidation rates and galvanic coupling, can be used to predict potential toxicity of deposit types and individual samples and highlight which may be of environmental concern. Although we cannot quantify toxicity, we observe that arc-related sulfide deposits have a high potential toxicity when compared with deposits from other tectonic settings based on their genetic association of a wide range of potentially toxic metals (As, Sb, Pb, Hg, Ag and Bi) that are incorporated into more reactive sulfosalts, galena and Fe-rich sphalerite. Thus, deposits such as these require special care when considered as mining targets. In contrast, the exclusive concern of ultra-mafic deposits is Cu, present in abundant, albeit less reactive chalcopyrite, but largely barren of other metals such as As, Pb, Sb, Cd and Hg. Whilst geological setting does dictate metal endowment, ultimately mineralogy is the largest control of trace element distribution and subsequent potential toxicity. Deposits containing abundant pyrrhotite (high-temperature deposits) and Fe-rich sphalerite (ubiquitous to all SMS deposits) as well as deposits with abundant colloform textures also pose a higher risk. This type of study can be combined with “bulk lethal toxicity” assessments and used throughout the stages of a mining project to help guide prospecting and legislation, focus exploitation and minimise environmental impact.

Description: Salar de Huasco at the Chilean Altiplano of the Atacama Desert is considered a polyextreme environment, where solar radiation, salinity and aridity are extremely high and occur simultaneously. In this study, a total of 76 bacterial isolates were discovered from soil samples collected at two different sites in the east shoreline of Salar de Huasco, including H0 (base camp next to freshwater stream in the north part) and H6 (saline soils in the south part). All isolated bacteria were preliminarily identified using some of their phenotypic and genotypic data into the genera Streptomyces (86%), Nocardiopsis (9%), Micromonospora (3%), Bacillus (1%), and Pseudomonas (1%). Streptomyces was found dominantly in both sites (H0 = 19 isolates and H6 = 46 isolates), while the other genera were found only in site H0 (11 isolates). Based on the genotypic and phylogenetic analyses using the 16S rRNA gene sequences of all Streptomyces isolates, 18% (12 isolates) revealed 〈98.7% identity of the gene sequences compared to those in the publicly available databases and were determined as highly possibly novel species. Further studies suggested that many Streptomyces isolates possess the nonribosomal peptide synthetases-coding gene, and some of which could inhibit growth of at least two test microbes (i.e., Gram-positive and Gram-negative bacteria and fungi) and showed also the cytotoxicity against hepatocellular carcinoma and or mouse fibroblast cell lines. The antimicrobial activity and cytotoxicity of these Streptomyces isolates were highly dependent upon the nutrients used for their cultivation. Moreover, the HPLC-UV-MS profiles of metabolites produced by the selected Streptomyces isolates unveiled apparent differences when compared to the public database of existing natural products. With our findings, the polyextreme environments like Salar de Huasco are promising sources for exploring novel and valuable bacteria with pharmaceutical potentials.

Description: We investigated the plankton community composition and abundance in the urban marine environment of Thessaloniki Bay. We collected water samples weekly from March 2017 to February 2018 at the coastal front of Thessaloniki city center and monthly samples from three other inshore sites along the urban front of the bay. During the study period, conspicuous and successive phytoplankton blooms, dominated by known mucilage-producing diatoms alternated with red tide events formed by the dinoflagellates Noctiluca scintillans and Spatulodinium pseudonoctiluca, and an extensive mucilage aggregate phenomenon, which appeared in late June 2017. At least 11 known harmful algae were identified throughout the study, with the increase in the abundance of the known harmful dinoflagellate Dinophysis cf. acuminata occurring in October and November 2017. Finally, a red tide caused by the photosynthetic ciliate Mesodinium rubrum on December 2017 was conspicuous throughout the sampling sites. The above-mentioned harmful blooms and red tides were linked to high nutrient concentrations and eutrophication. This paper provides an overview of eutrophication impacts on the response of the unicellular eukaryotic plankton organisms and their impact on water quality and ecosystem services

Description: Essential oil of Origanum species is well known for antimicrobial activity, but only a few have been evaluated in narrow spectrum antiprotozoal assays. Herein, we assessed the antiprotozoal potential of Turkish Origanum onites L. oil and its major constituents against a panel of parasitic protozoa. The essential oil was obtained by hydrodistillation from the dried herbal parts of O. onites and analyzed by Gas Chromatography-Flame Ionization Detector (GC-FID) and Gas Chromatography coupled with Mass Spectrometry (GC-MS). The in vitro activity of the oil and its major components were evaluated against Trypanosoma brucei rhodesiense, T. cruzi, Leishmania donovani, and Plasmodium falciparum. The main component of the oil was identified as carvacrol (70.6%), followed by linalool (9.7%), p-cymene (7%), γ-terpinene (2.1%), and thymol (1.8%). The oil showed significant in vitro activity against T. b. rhodesiense (IC50 180 ng/mL), and moderate antileishmanial and antiplasmodial effects, without toxicity to mammalian cells. Carvacrol, thymol, and 10 additional abundant oil constituents were tested against the same panel; carvacrol and thymol retained the oil’s in vitro antiparasitic potency. In the T. b. brucei mouse model, thymol, but not carvacrol, extended the mean survival of animals. This study indicates the potential of the essential oil of O. onites and its constituents in the treatment of protozoal infections.

Description: This study is focused on the specific features of ocean–air interaction in the Laptev Sea, in the late summer, on the basis of recurrent measurements during four expeditions in the 2000s and 2010s, atmospheric reanalysis products, and satellite ice concentration data. It was established that in the “icy” years, the accumulation of heat in the upper ocean layer is insignificant for the subsequent ice formation. In the “ice-free” years, the accumulated heat storage in the upper mixed layer depends on the duration of open water and the distance of the point of interest to the nearest ice edge. In a broader context, we considered possible links between the average ice area/extent in the August–September–October (ASO) period, and in the December–January–February (DJF) period, for two representative Arctic regions; that is, the Eurasian segment, defined within the bounds 60–120° E, 65–80° N, and the American segment, defined within the bounds 150° E–150° W, 65–80° N. Significant “seasonal memory”, characterized by the consistent change of the ice cover parameters in sequential seasons, was revealed in the Eurasian segment between 2007 and 2017. No linkage on a seasonal time scale was found in the American segment. A possible explanation for the distinguished contrast between the two geographical regions is proposed

Description: The fungi associated with marine algae are prolific sources of metabolites with high chemical diversity and bioactivity. In this study, we investigated culture-dependent fungal communities associated with the Baltic seaweed Fucus vesiculosus. Altogether, 55 epiphytic and endophytic fungi were isolated and identified. Twenty-six strains were selected for a small-scale One-Strain-Many-Compounds (OSMAC)-based fermentation in four media under solid and liquid culture regimes. In total, 208 fungal EtOAc extracts were tested for anticancer activity and general cytotoxicity. Ten most active strains (i.e., 80 extracts) were analyzed for their metabolome by molecular networking (MN), in-silico MS/MS fragmentation analysis (ISDB–UNPD), and manual dereplication. Thirty-six metabolites belonging to 25 chemical families were putatively annotated. The MN clearly distinguished the impact of culture conditions in chemical inventory and anticancer activity of the fungal extracts that was often associated with general toxicity. The bioactivity data were further mapped into MN to seek metabolites, exclusively expressed in the active extracts. This is the first report of cultivable fungi associated with the Baltic F. vesiculosus that combined an OSMAC and an integrated MN-based untargeted metabolomics approaches for efficient assessment and visualization of the impact of the culture conditions on chemical space and anticancer potential of the fungi.

Description: To model tracer spreading in the ocean, Lagrangian simulations in an offline framework are a practical and efficient alternative to solving the advective–diffusive tracer equations online. Differences in both approaches raise the question of whether both methods are comparable. Lagrangian simulations usually use model output averaged in time, and trajectories are not subject to parameterized subgrid diffusion, which is included in the advection–diffusion equations of ocean models. Previous studies focused on diffusivity estimates in idealized models but could show that both methods yield similar results as long as the deformations-scale dynamics are resolved and a sufficient amount of Lagrangian particles is used. This study compares spreading of an Eulerian tracer simulated online and a cloud of Lagrangian particles simulated offline with velocities from the same ocean model. We use a global, eddy-resolving ocean model featuring 1/20° horizontal resolution in the Agulhas region around South Africa. Tracer and particles were released at one time step in the Cape Basin and below the mixed layer and integrated for 3 years. Large-scale diagnostics, like mean pathways of floats and tracer, are almost identical and 1D horizontal distributions show no significant differences. Differences in vertical distributions, seen in a reduced vertical spreading and downward displacement of particles, are due to the combined effect of unresolved subdaily variability of the vertical velocities and the spatial variation of vertical diffusivity. This, in turn, has a small impact on the horizontal spreading behavior. The estimates of eddy diffusivity from particles and tracer yield comparable results of about 4000 m2 s−1 in the Cape Basin.

Description: As Streptomyces have shown an outstanding capacity for drug production, different campaigns in geographically distant locations currently aim to isolate new antibiotic producers. However, many of these newly isolated Streptomyces strains are classified as identical to already described species. Nevertheless, as discrepancies in terms of secondary metabolites and morphology are possible, we compared two Streptomyces strains with identical 16S rRNA gene sequences but geographically distant origins. Chosen were an Easter Island Streptomyces isolate (Streptomyces sp. SN25_8.1) and the next related type strain, which is Streptomyces griseus subsp. griseus DSM 40236T isolated from Russian garden soil. Compared traits included phylogenetic relatedness based on 16S rRNA gene sequences, macro and microscopic morphology, antibiotic activity and secondary metabolite profiles. Both Streptomyces strains shared several common features, such as morphology and core secondary metabolite production. They revealed differences in pigmentation and in the production of accessory secondary metabolites which appear to be strain-specific. In conclusion, despite identical 16S rRNA classification Streptomyces strains can present different secondary metabolite profiles and may well be valuable for consideration in processes for drug discovery

Description: Charge-coupled device (CCD) spectrometers are widely used as detectors in analytical laboratory instruments and as sensors for in situ optical measurements. However, as the applications become more complex, the physical and electronic limits of the CCD spectrometers may restrict their applicability. The errors due to dark currents, temperature variations, and blooming can be readily corrected. However, a correction for uncertainty of integration time and wavelength calibration is typically lacking in most devices, and detector non-linearity may distort the signal by up to 5% for some measurements. Here, we propose a simple correction method to compensate for non-linearity errors in optical measurements where compact CCD spectrometers are used. The results indicate that the error due to the non-linearity of a spectrometer can be reduced from several hundred counts to about 40 counts if the proposed correction function is applied.

Description: Satellite observations and output from a high-resolution ocean model are used to investigate how the Loop Current in the Gulf of Mexico affects the Gulf Stream transport through the Florida Straits. We find that the expansion (contraction) of the Loop Current leads to lower (higher) transports through the Straits of Florida. The associated surface velocity anomalies are coherent from the southwestern tip of Florida to Cape Hatteras. A simple continuity-based argument can be used to explain the link between the Loop Current and the downstream Gulf Stream transport: as the Loop Current lengthens (shortens) its path in the Gulf of Mexico, the flow out of the Gulf decreases (increases). Anomalies in the surface velocity field are first seen to the southwest of Florida and within 4 weeks propagate through the Florida Straits up to Cape Hatteras and into the Gulf Stream Extension. In both the observations and the model this propagation can be seen as pulses in the surface velocities. We estimate that the Loop Current variability can be linked to a variability of several Sverdrups (1Sv = 10(6) m(3) s(-1)) through the Florida Straits. The exact timing of the Loop Current variability is largely unpredictable beyond a few weeks and its variability is therefore likely a major contributor to the chaotic/intrinsic variability of the Gulf Stream. However, the time lag between the Loop Current and the flow downstream of the Gulf of Mexico means that if a lengthening/shortening of the Loop Current is observed this introduces some predictability in the downstream flow for a few weeks.