ALBERT

Description: It is well documented that animals take risk of predation into account when making decisions about how to behave in particular situations, often trading-off risk against opportunities for mating or acquiring energy. Such an ability implies that animals have reliable information about the risk of predation at a given place and time. Chemosensory cues are an important source of such information. They reliably reveal the presence of predators (or their presence in the immediate past) and may also provide information on predator activity level and diet. In certain circumstances (e.g., in the dark, for animals in hiding) they may be the only cues available. Although a vast literature exists on the responses of prey to predator chemosensory cues (or odours), these studies are widely scattered, from marine biology to biological control, and not well known or appreciated by behavioural ecologists. In this paper, we provide an exhaustive review of this literature, primarily in tabular form. We highlight some of the more representative examples in the text, and discuss some ecological and evolutionary aspects of the use of chemosensory information for prey decision making. Curiously, only one example illustrates the ability of birds to detect predator odours and we have found no examples for terrestrial insects, suggesting a fruitful area for future study.

Description: Biomineralized structures and tissues are composites, containing a biologically produced organic matrix and nano- or microscale amorphous or crystalline minerals. Two main examples of organic matrices – the amino-polysaccharide chitin and the asymmetric protein collagen – are presented and discussed as the basic structural modules and organo-templates for calcium and silica biomineralization in nature. Both serve as templates, providing preferential sites for nucleation and controlling the location and orientation of mineral phases. Here, for the first time, chitin and collagen are analysed from evolutionary, structural, and functional points of view with respect to their templating properties in calcification and silicification phenomena, using both in vivo and in vitro data. It is proposed that these biopolymers be characterized as fundamental templates in biomineralization, inasmuch as they are very ancient from an evolutionary point of view, common to many species and biological systems with a global distribution. The two polymers also exhibit very similar hierarchical structural organizations, in spite of the possible alternatives they provide in chemical nature and origin. In addition, the phenomenon of multi-phase mineralization – where two minerals, amorphous and crystalline CaCO3, form from one biomolecule, chitin – is also described, analysed, and discussed for the first time.

Description: Despite coelacanths, Latimeria chalumnae, being listed as either endangered by CITES or critically endangered by the IUCN, their population size within South Africa is unknown and still needs to be estimated. Their conservation status unfortunately excludes the use of conventional tagging to mark individual animals for a possible mark–recapture experiment. This study shows that because coelacanths have a unique spot patterning it is possible to quickly and accurately identify specific individuals photographically using computer-aided identification software. Without any manual intervention by an operator, the software accurately identified between 56 and 92% of the individuals. Indentification success increased to 100% if the operator could also manually select from other potential matching photographs. It was also shown that fish exhibiting a yaw angle not exceeding 60° could be accurately identified in photographs, although the percentage of fish correctly identified without operator-intervention decreased rapidly with increasing yaw angle. Computer-aided identification should therefore facilitate future coelacanth research as it is both efficient and accurate while also reducing potential stress on the animals observed.

Description: A new image of the French continental crust between Brabant (Belgium) and the Basque province of Spain is presented on the basis of considerable recent geological and geophysical information as well as the compilation and reInterprétation of previously available data. The resulting section, which shows the main basement structures to a depth of 45 km, also is the first nonspeculative image of the westernmost part of the Variscan orogen. The French Global Geoscience Transect reveals a complete picture of this orogen between its remnant root and the surface. The divergent thrusts are bounded on the north and in the south by the old Brabant and Ebro-Aquitaine cratons, respectively; these thrusts also involve two previous plate boundaries. The lower part of the orogen is limited by a layered lower crust, probably of Permian age. Near the surface the Hercynian orogen is buried—near the northern end of the transect by the Paris Basin, which can be considered an eastward extension of the English Channel, and in the south by the South Armorican continental margin, which makes a transition between the oceanic crust of the Bay of Biscay and the axis of the Variscan orogen. In this area, the deep Parentis graben is located at the site of pronounced crustal thinning, since only 7 km of Hercynian crust are now preserved.

Description: A new compound, jolynamine (1), was isolated from the marine brown alga Jolyna laminarioides collected from the coast of Karachi, Pakistan. In addition, four known compounds, namely saringosterol (2), loliolide (3), methyl-4-hydroxybenzoate (4) and propyl-4-hydroxybenzoate (5), were isolated for the first time from the marine brown alga Iyengaria stellata, and two known compounds, namely 3,4,5-trimethylaniline (6) and harmine (7), were isolated for the first time from the marine brown alga Melanothamnus afaqhusainii. Compound 6 is synthetically known but was isolated for the first time from a natural source. The structures of these compounds were elucidated with the help of powerful spectroscopic techniques. Furthermore, the methanolic extracts of both algae showed anti-microbial activities against various bacteria and fungi.

Description: In this paper, we empirically investigate the robustness of random forests for regression problems. We also investigate the performance of six variations of the original random forest method, all aimed at improving robustness. These variations are based on three main ideas: (1) robustify the aggregation method, (2) robustify the splitting criterion and (3) taking a robust transformation of the response. More precisely, with the first idea, we use the median (or weighted median), instead of the mean, to combine the predictions from the individual trees. With the second idea, we use least-absolute deviations from the median, instead of least-squares, as splitting criterion. With the third idea, we build the trees using the ranks of the response instead of the original values. The competing methods are compared via a simulation study with artificial data using two different types of contaminations and also with 13 real data sets. Our results show that all three ideas improve the robustness of the original random forest algorithm. However, a robust aggregation of the individual trees is generally more profitable than a robust splitting criterion.

Description: The annual winter sardine run along the South African east coast impacts the KwaZulu-Natal (KZN) coastal system in a variety of ways. These include ecological impacts, such as enrichment of a largely oligotrophic environment, competition between migrant sardine Sardinops sagax, other migrant and resident small pelagic fish species, and interactions with predators, as well as the socio-economic impacts of the sardine run on the local people. Enrichment of KZN coastal waters with organic nitrogen contained within the sardine is compared with alternative sources of nitrogen such as upwelling, river, sewage and stormwater runoff, and groundwater discharge. The sardine run appears to contribute most nitrogen to this system—96 000 t compared to 500–3 300 t for each of the other significant sources at trophic level 2, although upwelling estimates are extremely wide. Nonetheless, the majority of surviving sardine, their young and predators return southwards, suggesting that the nett export of nitrogen to KZN waters during the run is likely to be of a similar order of magnitude as that from other sources. Further, whereas the sardine supply of nitrogen is exclusively during winter, the bulk of the riverine input is in summer, thus ensuring that nitrogen supply in the region is maintained at fairly constant levels throughout the year. Competition for food between small pelagic fish is minimised by resource partitioning, but further dietary data are needed for resident species. Although interactions between sardine and top predators must exist, further studies are needed to confirm links between top predator life cycles and the sardine run. The estimated value of sardine as a tourist spectacle is compared to that from a seasonal beach-seine or boat-based purse-seine fishery for this species. Whereas the estimated value of the sardine as a tourist attraction appears substantially higher than could be derived from catching them, the small-scale beach-seine fishery itself draws tourists and also provides limited, seasonal employment opportunities.

Description: Our understanding of the fundamental regulatory roles that tyrosine phosphatases play within cells has advanced significantly in the last two decades. Out-dated ideas that tyrosine phosphatases acts solely as the “off” switch counterbalancing the action of tyrosine kinases has proved to be flawed. PTP1B is the most characterized of all the tyrosine phosphatases and it acts as a critical negative and positive regulator of numerous signaling cascades. PTP1B’s direct regulation of the insulin and the leptin receptors makes it an ideal therapeutic target for type II diabetes and obesity. Moreover, the last decade has also seen several reports establishing PTP1B as key player in cancer serving as both tumor suppressor and tumor promoter depending on the cellular context. Despite many key advances in these fields one largely ignored area is what role PTP1B may play in the modulation of immune signaling. The important recognition that PTP1B is a major negative regulator of Janus kinase – signal transducer and activator of transcription (JAK-STAT) signaling throughout evolution places it as a key link between metabolic diseases and inflammation, as well as a unique regulator between immune response and cancer. This review looks at the emergence of PTP1B through evolution, and then explore at the cell and systemic levels how it is controlled physiologically. The second half of the review will focus on the role(s) PTP1B can play in disease and in particular its involvement in metabolic syndromes and cancer. Finally we will briefly examine several novel directions in the development of PTP1B pharmacological inhibitors.

Description: Species distribution models (SDMs) are an important tool in biogeography and ecology and are widely used for both fundamental and applied research purposes. SDMs require spatially explicit information about species occurrence and environmental covariates to produce a set of rules that identify and scale the environmental space where the species was observed and that can further be used to predict the suitability of a site for the species. More spatially accurate data are increasingly available, and the number of publications on the influence of spatial inaccuracies on the performance of modelling procedures is growing exponentially. Three main sources of uncertainty are associated with the three elements of a predictive function: the dependent variable, the explanatory variables and the algorithm or function used to relate these two variables. In this study, we review how spatial uncertainties influence model accuracy and we propose some methodological issues in the application of SDMs with regard to the modelling of fundamental and realized niches of species. We distinguish two cases suitable for different types of spatial data accuracy. For modelling the realized distribution of a species, particularly for management and conservation purposes, we suggest using only accurate species occurrence data and large sample sizes. Appropriate data filtering and examination of the spatial autocorrelation in predictors should be a routine procedure to minimize the possible influence of positional uncertainty in species occurrence data. However, if the data are sparse, models of the potential distribution of species can be created using a relatively small sample size, and this can provide a generalized indication of the main regional drivers of the distribution patterns. By this means, field surveys can be targeted to discover unknown populations and species in poorly surveyed regions in order to improve the robustness of the data for later modelling of the realized distributions. Based on this review, we conclude that (1) with data that are currently available, studies performed at a resolution of 1–100 km2 are useful for hypothesizing about the environmental conditions that limit the distribution of a species and (2) incorporating coarse resolution species occurrence data in a model, despite an increase in sample size, lowers model performance.

Description: A model is presented which tests the representation of the maturity process in terms of gonadosomatic indices (GSI) in chokka squid Loligo vulgaris reynaudii. It assumes that the true maturation process is reflected by the results of histological investigation, which cannot be used in large-scale ecological work in the field. However, the maturity scales used in ecological studies define some morphological categories which can be linked directly to microscopic development. Therefore, the overlap of GSI ranges for each morphological maturity category may be used to judge how well the GSIs represent the histological stages. Results have shown that the overlap is large and that GSI cannot be recommended as adequately reflecting the maturation process in squid. A morphological scale of maturity with possible broad applications in exploited families of squid is proposed as a better representation of the maturation process than GSI.

Description: Morphological differences between paralarvae of two loliginid squid species common in southern African waters (Loligo vulgaris reynaudii and Lolliguncula mercatoris) are described. The differences are: Loligo — "cheek patches" consisting of four dark chromatophores, nine large dark dorsal chromatophores on the mantle, tentacular clubs broad and much wider than tentacle stalks, proximal row of three club suckers with others tetraserial, suckers large enough to appear crowded on the club surface; Lolliguncula — "cheek patches" with three dark chromatophores, two pairs of" large, dark dorsal chromatophores on the mantle, tentacular clubs narrow, proximal club suckers arranged in three pairs, suckers small, not particularly crowded. Relationships with other myopsids are briefly discussed.

Description: Cereopsis studeri was described by G. von Koch in 1891 with material from Naples. However, it was subsequently synonymized, erroneously identified, and overlooked in subsequent soft coral literature of the twentieth century. After the original description, this species was not recorded or correctly described for 120 years. The study of newly collected material from the North Western Mediterranean permits the re-description of this forgotten species and its assignation to the genus Nidalia in the family Nidaliidae. The main features of Nidalia studeri com. nov. are: colony torch-like, a capitulum light orange in colour, not laterally flattened, dome-shaped and not distinctly projecting beyond the stalk, introvert with sclerites transversally placed in two longitudinal rows per interseptal space, anthocodial crown with 28–38 sclerite rows, points separated from polyps distally, formed by 6–9 pairs of sclerites, and the presence of intermediate points (secondary points) between principal (interseptal) ones. Nidalia studeri is here compared with its closest congeners, especially with the Indonesian species N. simpsoni, species from the West Indian Region N. dissidens, N.occidentalis, N. deichmannae, and the recently described Nidalia aurantia from the Mid-Atlantic Ocean. This is the first time that the genus Nidalia and the family Nidaliidae have been reported with certainty for the Mediterranean Sea.

Description: The changes in global temperatures as a result of carbon dioxide (CO2) emissions has suggested that cumulative CO2 emissions will continue to increase over time. Many countries are looking for ways to reduce or alter the amount of CO2 harming our environment; therefore, this review is a compilation of CO2 adsorption on biomass-derived-biochar (BDB). This suggests that effective measures to mitigate the risk of dangerous climate change will need to limit cumulative emissions of CO2. Further, if cumulative CO2 emissions overshoot acceptable limits, it will become necessary to remove CO2 from the air, that is, the so-called “negative emissions.” In this review, we discuss the definitions and classes of technologies for capturing CO2 from the air and the application of biochar in the improvement of soil fertility. We also discuss the economic tradeoff between biochar and bio-oil, agricultural nutrient leaching, the novel magnetic property of biochar and its durability.

Description: Three new compounds, 4′-(4,5-dimethyl-1,3-dioxolan-2-yl)methyl-phenol (1), (3′-hydroxybutan-2′-yl)5-oxopyrrolidine-2-carboxylate (2), and atroviridetide (3), have been isolated from the marine-derived fungus Trichoderma atroviride G 20-12. Their structures were determined on the basis of chemical and spectroscopic methods.

Description: It is well known that random forests reduce the variance of the regression predictors compared to a single tree, while leaving the bias unchanged. In many situations, the dominating component in the risk turns out to be the squared bias, which leads to the necessity of bias correction. In this paper, random forests are used to estimate the regression function. Five different methods for estimating bias are proposed and discussed. Simulated and real data are used to study the performance of these methods. Our proposed methods are significantly effective in reducing bias in regression context.

Description: A histological study of the reproductive cycle of male and female shore crabs, Carcinus maenas (Linnaeus), was performed monthly on the South West coast of Ireland (from December 2006 to July 2008). The calculated sex ratio deviated from equality, 1:0.53, revealing a strong male bias. A system was devised, based on screening of tissue sections, to describe and stage gametogenic development. Histological examinations revealed that ovarian development occurred biannually, with a primary winter cycle in which the larger crabs reproduced and a secondary summer cycle, when smaller crabs reproduced. An association was observed where more of the larger specimens were caught in the summer months and the smaller specimens in the winter months, which inversely correlated with the segregated breeding cycles. There was strong evidence that mature male crabs could potentially copulate year round since all mature specimens, collected throughout the year, contained viable spermatozoa. Developmental stages of oogenesis and spermatogenesis were described to develop a practical gonadal index for this portunid crab, providing information on the biology of this species, which will be of benefit for fisheries management.

Description: Introduction: Nanocarriers are considered to be one of the most innovative drug delivery systems, owing to their high potential in drug protection, delivery and targeting to the diseased site. Unfortunately, their applicability is hampered mainly by their uptake, due to macrophagic recognition and lack of specificity, if not properly engineered. Areas covered: Sialic acid (SA) and its derivatives have recently been studied in order to govern their stealthness as carriers and their effectiveness as targeting moieties. In this review, the most outstanding research (in vitro and in vivo) dealing with the use of SA or its derivatives to modify the surface carriers, in order to achieve targeted or stealth nanosystems, is summarized. Moreover, the application of SA or its derivatives as modifiers in cancer targeting and therapy, and in recognition purposes, is considered. Expert opinion: The application of SA-based strategies for nanocarrier engineering represents one of the most stimulating challenges in drug delivery and drug targeting. Both in vivo and in vitro results on stealth or targeted nanocarriers, modified with different kinds of SA or SA derivative, have highlighted the great potential of this approach. These studies have drawn attention to both the advantages (stealth properties, targeting ability, cancer inhibition, viral and inflammation recognition, brain targeting) and the possible disadvantages (i.e., presence of possible multi-target side effect outputs) of this strategy, and overall suggests that further investigations on this strategy are required.

Description: There has been debate in the literature about whether jellyfish abundance has increased in the northern Benguela upwelling system, or not, over the past five decades and what impact they are having on pelagic fish. Here we review old expedition literature as well as more recent spatial and temporal patterns in distribution of jellyfish off Namibia at a number of different scales, using both published and previously unpublished data. Specifically, we have used data from fishery-dependent sources of both the demersal (359 638 trawls) and pelagic fisheries (11 324 purse-seine sets) that cover the period 1992–2006, supported by data from fishery-independent demersal (6 109 trawls) and pelagic trawls (1 817 trawls) from 1996 to 2006. Using frequency of capture as an index of abundance, it is clear that jellyfish are not randomly distributed within the northern Benguela ecosystem, but show specific areas of concentration that broadly reflect regional oceanography and the distribution of other zooplankton. Although jellyfish are present throughout the year, peaks in abundance are shown that often coincide with peaks in the spawning activity of fish of commercial importance. Interannual changes in jellyfish abundance observed from all sources do not agree, with some showing increases, others declines, and still others showing no change, which suggests caution should be exercised in their interpretation. Based on the multiple lines of evidence synthesised here, we conclude that jellyfish abundance has increased concomitant with a decline of pelagic fish stocks. We conclude that future recovery of the pelagic fishery off Namibia is likely to be considerably challenged because of significant overlaps in space and time between fish and jellyfish, and through the effects of competition and predation effects of jellyfish on fish.

Description: In this paper, drained behaviour of cemented sand under high pressure is studied. A recently developed high pressure triaxial apparatus is used. The test results indicate the significance of degree of cementation and confining pressure on the isotropic compression, volumetric change, stress-strain behaviour and stress-dilatancy relationship of cemented sand at high confining pressures. The results suggest that the influence of cementation is greater at low confining stresses and it reduces with increasing confining stress where the effect of the confining pressure becomes dominant. A Scanning Electron Microscope analysis has also been included in the paper. It revealed that the particle and cement bonding breakage at high pressure is dependent on the stress level and the cement content. The higher the confining pressure the more significant particle and cement bonding breakage is observed. The higher the cement content the fewer sand particles and cement bonds are broken.

Description: The abundance of gold in crustal rocks is an important constraint on the formation of gold deposits. Gold concentrations in unmineralised igneous, sedimentary and metamorphic rocks range from 0.05 to 20 ppb with average concentrations commonly between 0.5 and 5 ppb. Analytical methods with ultra-low detection limits are required to observe the full range of concentrations. Gold concentrations in igneous rocks are strongly controlled by the behaviour of sulphur. Higher gold concentrations occur in sulphur-undersaturated rocks compared to sulphur saturated igneous rocks. Mid ocean ridge basalt has lower gold concentration than ocean-island and volcanic-arc basalt, due mainly to lower oxygen fugacity at MOR settings that causes sulphur saturation. Gold concentrations in sedimentary rocks increase with increasing abundance of diagenetic sulphide minerals and organic matter. Gold concentrations in metamorphic rocks decrease systematically with increasing metamorphic grade. Amphibolite facies rocks commonly contain between 50 and 80% less gold than their unmetamorphosed protolith rocks.

Description: This paper provides an introduction to, and overview of, the natural phenomenon known as the KwaZulu-Natal sardine run. Previous literature on this topic and hypotheses about the reasons why, and the mechanisms how, the run occurs are briefly synthesised and described. Papers contributing to this suite that detail more recent work on a variety of aspects of the sardine run, ranging from physical oceanography through sardine biology and ecology to socio-economic and ecological consequences, are outlined. Such studies will lead to improved understanding of the factors that regulate the timing and intensity of the run, which may permit predictions of whether it will occur, when fish will arrive on the KZN beaches, and how long it will persist. Such predictions would have substantial benefits for this ecologically and economically important event.

Description: A study of the echo peak amplitudes from known nodule areas is initiated to observe the acoustic response for varying nodule abundances and number densities. A statistical study of the peak amplitudes from different nodule areas confirms that the coefficient of variation is the highest for medium nodule abundance and number density. Echo fluctuation study based on the Rician probability density function (PDF) establishes that the non‐nodule sediment bottom contributes to less scattering, i.e., it is a microtopographic type, whereas scattering is dominant in the nodule‐bearing areas. The spectral studies are conducted on depth data of different areas. This study ensures that the signal scattering in the nodule bottom area is due to the nodules lying on the seabed rather than the large / small‐scale topographic variations. The study based on Poisson PDF for nodule area confirms this fact again. Agreement between the nodule distribution and the Poisson distribution parameter is clearly seen. Such a relation is not observed in the case of Rician density functions.

Description: In this article, wave refraction and shoaling in coastal areas were investigated and used to derive the bathymetry. With its high spatial resolution, which can achieve up to 1 m in SpotLight mode, and its low cut-off wavelength, the TerraSAR-X satellite provides images that are particularly suitable for the observation of wave behaviour in transient and shallow waters. By computing the two-dimensional (2D) spectra, shoaling waves were tracked from the open sea to the shoreline. The observed wave refraction and shoaling were compared with wave refraction laws and first-order wave theory (Airy theory). The retrieved bathymetry was compared against depth data from other sources such as ETOPO1, the US Coastal Relief Model and sea charts from the British Admiralty. A further aim of this article was the investigation of breaking waves showing up as near-shore image patterns. A theory is presented of how to derive the height of breaking waves by use of this pattern. Synthetic aperture radar (SAR) images with azimuth as well as range travelling waves were investigated. As test sites, we chose the entrance of Port Phillip near Melbourne (Australia) and the Duck Research Pier in North Carolina (USA).

Description: Mineral exploration activities require robust predictive models that result in accurate mapping of the probability that mineral deposits can be found at a certain location. Random forest (RF) is a powerful machine data-driven predictive method that is unknown in mineral potential mapping. In this paper, performance of RF regression for the likelihood of gold deposits in the Rodalquilar mining district is explored. The RF model was developed using a comprehensive exploration GIS database composed of: gravimetric and magnetic survey, a lithogeochemical survey of 59 elements, lithology and fracture maps, a Landsat 5 Thematic Mapper image and gold occurrence locations. The results of this study indicate that the use of RF for the integration of large multisource data sets used in mineral exploration and for prediction of mineral deposit occurrences offers several advantages over existing methods. Key advantages of RF include: (1) the simplicity of parameter setting; (2) an internal unbiased estimate of the prediction error; (3) the ability to handle complex data of different statistical distributions, responding to nonlinear relationships between variables; (4) the capability to use categorical predictors; and (5) the capability to determine variable importance. Additionally, variables that RF identified as most important coincide with well-known geologic expectations. To validate and assess the effectiveness of the RF method. Statistical measures of map quality indicate that the RF method performs better than LR, with mean square errors equal to 0.12 and 0.19, respectively. The efficiency of RF is also better, achieving an optimum success rate when half of the area predicted by LR is considered.

Description: Plastic debris accumulates in the marine environment following its use in agricultural, industrial and social activities. Its ultimate fate is accomodation in sediments where it may persist for times up to centuries or longer. There appears to be an increasing flux of materials with time and an increased areal coverage of the benthos. Impacts upon bottom organisms can take many forms. Systematic monitoring tactics for the extent of seafloor coverage by plastics are yet to be incorporated into national programs.

Description: A thorough knowledge of global ocean precipitation is an indispensable prerequisite for the understanding of the water cycle in the global climate system. However, reliable detection of precipitation over the global oceans, especially of solid precipitation, remains a challenging task. This is true for both, passive microwave remote sensing and reanalysis based model estimates. The optical disdrometer ODM 470 is a ground validation instrument capable of measuring rain and snowfall on ships even under high wind speeds. It was used for the first time over the Nordic Seas during the LOFZY 2005 campaign. A dichotomous verification of precipitation occurrence resulted in a perfect correspondence between the disdrometer, a precipitation detector and a shipboard observer's log. The disdrometer data is further point-to-area collocated against precipitation from the satellite based Hamburg Ocean Atmosphere Parameters and fluxes from Satellite data (HOAPS) climatology. HOAPS precipitation turns out to be overall consistent with the disdrometer data resulting in a detection accuracy of 0.96. The collocated data comprises light precipitation events below 1 mm h–1. Therefore two LOFZY case studies with high precipitation rates are presented that indicate plausible HOAPS satellite precipitation rates. Overall, this encourages longer term measurements of ship-to-satellite collocated precipitation in the near future.

Description: The mechanisms involved in setting the annual cycle of the Florida Current transport are revisited using an adjoint model approach. Adjoint sensitivities of the Florida Current transport to wind stress reproduce a realistic seasonal cycle with an amplitude of ~1.2 Sv (1 Sv ≡ 106 m3 s−1). The annual cycle is predominantly determined by wind stress forcing and related coastal upwelling (downwelling) north of the Florida Strait along the shelf off the North American coast. Fast barotropic waves propagate these anomalies southward and reach the Florida Strait within a month, causing an amplitude of ~1 Sv. Long baroclinic planetary Rossby waves originating from the interior are responsible for an amplitude of ~0.8 Sv but have a different phase. The sensitivities corresponding to the first baroclinic mode propagate westward and are highly influenced by topography. Considerable sensitivities are only found west of the Mid-Atlantic Ridge, with maximum values at the western shelf edge. The second baroclinic mode also has an impact on the Florida Current variability, but only when a mean flow is present. A second-mode wave train propagates southwestward from the ocean bottom on the western side of the Mid-Atlantic Ridge between ~36° and 46°N and at Flemish Cap, where the mean flow interacts with topography, to the surface. Other processes such as baroclinic waves along the shelf and local forcing within the Florida Strait are of minor importance.

Description: The residual effect of surface gravity waves on mean flows in the upper ocean is investigated using thickness weighted mean (TWM) theory applied in a vertically Lagrangian and horizontally Eulerian coordinate system. Depth-dependent equations for the conservation of volume, momentum, and energy are derived. These equations allow for (i) finite amplitude fluid motions, (ii) the horizontal divergence of currents and (iii) a concise treatment of both the kinematic and viscous boundary conditions at the sea surface. Under the assumptions of steady and monochromatic waves and a uniform turbulent viscosity, the TWM momentum equations are used to illustrate the pressure- and viscosity-induced momentum fluxes through the surface that are implicit in previous studies of the wave-induced modification of the classical Ekman spiral problem. The TWM approach clarifies, in particular, the surface momentum flux associated with the so-called virtual wave stress of Longuet-Higgins. Overall the TWM framework can be regarded as an alternative to the three-dimensional Lagrangian mean framework of Pierson. Moreover the TWM framework can be used to include the residual effect of surface waves in large-scale circulation models. In specific models that carry the TWM velocity appropriate for advecting tracers as their velocity variable, the turbulent viscosity term should be modified so that the viscosity acts only on the Eulerian mean velocity.

Description: A method to derive salinity data from RAFOS float temperature and pressure measurements is described. It is based on evaluating the float's in situ density from its mechanical properties and in situ pressure and temperature data. The salinity of the surrounding water may then be determined, assuming that the float has reached equilibrium with its environment. This method, in comparison with the possible use of floatborne salinity cells, has the advantage of being both cost and energy neutral and highly stable in the long term. The effect on the estimated salinity of various parameters used in the determination of the float's in situ density is discussed. Results of seven RAFOS Boats deployed in the Brazil Basin are compared with corresponding CTD data to estimate the magnitude of these errors. At present, an accuracy of 0.3 psu is achieved. The accuracy may be improved to 0.02 psu by referring the float's calculated density to a reference density established by a CTD cast at the time of launch. Results from five floats deployed in the heterogeneous water masses of the Iberian Basin are compared with the corresponding CM casts to demonstrate the variability and interpretation of p-T-S float datasets from different areas.

Description: Many Penicillium species produce enzyme systems with good performances in lignocellulose degradation. In our laboratory, lignocellulolytic enzyme-producing Penicillium oxalicum (formerly classified as Penicillium decumbens) strains have been studied for more than 30 years. High cellulase-producing mutants have been obtained through random mutagenesis and genetic engineering, and the components in the enzyme systems have been elucidated using systems biology tools. The effects of different carbon sources on the production level of lignocellulolytic enzymes have been studied, and the related molecular mechanisms have been investigated. When compared with the widely used cellulase producer Trichoderma reesei, some unique features have been found in P. oxalicum, including higher β-glucosidase activity, higher numbers of lignocellulolytic enzyme gene, and different response of cellulase gene expression to some disaccharides. To boost the economic potential of the biorefineries using lignocellulosic biomass, P. oxalicum strains need to be further improved regarding the performance and production level of the enzyme systems.

Description: Many aspects of barnacle body form are known to be developmentally plastic. Perhaps the most striking examples of such plasticity occur in their feeding legs and unusually long penises, the sizes and shapes of which can change dramatically and adaptively with changes in conspecific density and local water flow conditions. However, whether variation in overall appendage form is mirrored by structural responses in cuticle and muscle is not known. In order to determine how structural variation underlies phenotypic plasticity in barnacle appendages, we examined barnacles occurring at low and high population densities from one wave-protected and one wave-exposed site. We used histological sectioning and fluorescence microscopy of feeding legs and penises to compare cuticle thickness, muscle thickness, and muscle organization, and artificial penis inflation to compare penis extensibility. We observed striking differences in cuticle thickness, muscle thickness, and muscle organization between sites that differed in water velocity, but we found no clear differences associated with variation in conspecific density. Penis extensibility also did not differ consistently between sites. These results are consistent with an adaptive explanation for much of the remarkable and complex variation in barnacle feeding leg and penis morphology among sites that differ in water velocity.

Description: The Southern Hemisphere Subtropical Front (STF) is a narrow zone of transition between upper-level subtropical waters to the north and subantarctic waters to the south. It is found near 40 degrees S across the South Atlantic and South Indian Oceans and is associated with an eastward geostrophic current band, The current band in each basin is found at or just north of the surface front except near the eastern boundaries where most of the subtropical waters turn north into the eastern limbs of the subtropical gyres. The bands associated with the STF are thus distinct features separated from the strong zonal flows of the Antarctic Circumpolar Current farther south. The authors have referred to the current bands in the two respective oceans as the South Atlantic Current and the South Indian Ocean Current. In this paper the authors use the historical database from the South Pacific Ocean to investigate the geostrophic flow associated with the STF there. The STF extends across the southern Tasman Sea from south of Tasmania to southern New Zealand, and a weak eastward flow appears to be associated with it. The transport amounts to only about 3 Sv (1Sv = 10(6) m(3) s(-1)), little of which passes south of New Zealand. Mixing within the eddy-rich Tasman Sea may account for this weakness, while also setting up another more significant front in the northern Tasman Sea, the Tasman Front. It branches off from the East Australian Current toward the north of New Zealand, along which moves a flow of about 14 Sv. After passing north of New Zealand, a portion of this current flows east to contribute to a current band near 30 degrees S, while another portion turns south as the East Auckland Current and meets with subantarctic waters near Chatham Rise (44 degrees S), thus reestablishing the STF. An enhanced eastward current band is associated with the front there, one that extends across the remainder of the South Pacific and is referred to as the South Pacific Current. In comparison with its counterparts in the other basins, which typically begin by carrying 30 Sv (Atlantic) to 60 Sv (Indian) in the upper 1000 m in their western portions before weakening to 10-15 Sv in the east, the South Pacific Current is weak. Near Chatham Rise, it starts with a transport of approximately 5 Sv, and it remains near this strength as it shifts gradually north across the basin toward South America. The current appears to split into two smaller bands in the region of 115 degrees-85 degrees W, while near 28 degrees 5, 83 degrees W it begins to turn more strongly north and becomes shallower and weaker. Potential vorticity distributions indicate that this current acts as an impediment toward the northward spreading of Antarctic Intermediate Water, But why the South Pacific Current east of New Zealand should be so much weaker than its counterparts in the other basins is not particularly clear. It may be due to the presence of New Zealand and other topographic barriers to deep now east of Australia, to the axis of the subtropical gyre in the South Pacific shifting more rapidly southward with depth than those elsewhere, thus causing greater reductions in the underlying zonal velocities, and to strong poleward eddy heat and salt fluxes in the other two basins leading to smaller cross-STF gradients in the Pacific.

Description: The temporal and spatial variability of sea-ice radar signatures in the Southern Ocean during late winter, spring and early summer from QuikSCAT data is presented. We observe a circumpolar and broad band of sea-ice close to the marginal ice zone that is characterized by very high radar backscatter. This feature is explained through detailed in situ observations of snow and sea-ice properties as well as in relation to meteorological conditions, which were derived from US National Center for Environmental Prediction (NCEP)/National Center for Atmospheric Research (NCAR) reanalysis data. Our results indicate that high backscatter regions are caused by metamorphous snow, which forms through re-freezing after short-term melt events. This process is connected with the episodic passes of low-pressure systems entraining warmer air from the north. South of the Antarctic Circumpolar Trough, sea-ice is not affected by this influence and shows spatially homogenous microwave signatures with low backscatter.

Description: The suggestion is advanced that the remarkably low static stability of Antarctic surface waters may arise from a feedback loop involving global deep-water temperatures. If deep-water temperatures are too warm, this promotes Antarctic convection, thereby strengthening the inflow of Antarctic Bottom Water into the ocean interior and cooling the deep ocean. If deep waters are too cold, this promotes Antarctic stratification allowing the deep ocean to warm because of the input of North Atlantic Deep Water. A steady-state deep-water temperature is achieved such that the Antarctic surface can barely undergo convection. A two-box model is used to illustrate this feedback loop in its simplest expression and to develop basic concepts, such as the bounds on the operation of this loop. The model illustrates the possible dominating influence of Antarctic upwelling rate and Antarctic freshwater balance on global deep-water temperatures.

Description: The assessment of direct effects of anthropogenic CO2 increase on the marine biota has received relatively little attention compared to the intense research on CO2-related responses of the terrestrial biosphere. Yet, due to the rapid air–sea gas exchange, the observed past and predicted future rise in atmospheric CO2 causes a corresponding increase in seawater CO2 concentrations, [CO2], in upper ocean waters. Increasing [CO2] leads to considerable changes in the surface ocean carbonate system, resulting in decreases in pH and the carbonate concentration, [CO2−3]. These changes can be shown to have strong impacts on the marine biota. Here we will distinguish between CO2-related responses of the marine biota which (a) potentially affect the ocean's biological carbon pumps and (b) are relevant to the interpretation of diagnostic tools (proxies) used to assess climate change on geological times scales. With regard to the former, three direct effects of increasing [CO2] on marine plankton have been recognized: enhanced phytoplankton growth rate, changing elemental composition of primary produced organic matter, and reduced biogenic calcification. Although quantitative estimates of their impacts on the oceanic carbon cycle are not yet feasible, all three effects increase the ocean's capacity to take up and store atmospheric CO2 and hence, can serve as negative feedbacks to anthropogenic CO2 increase. With respect to proxies used in palaeo-reconstructions, CO2-sensitivity is found in carbon isotope fractionation by phytoplankton and foraminifera. While CO2- dependent isotope fractionation by phytoplankton may be of potential use in reconstructing surface ocean pCO2 at ancient times, CO2-related effects on the isotopic composition of foraminiferal shells confounds the use of the difference in isotopic signals between planktonic and benthic shells as a measure for the strength of marine primary production. The latter effect also offers an alternative explanation for the large negative swings in δ13C of foraminiferal calcite between glacial and interglacial periods. Changes in [CO2−3] affect the δ18O in foraminiferal shells. Taking this into account brings sea surface temperature estimates for the glacial tropics closer to those obtained from other geochemical proxies.

Description: The reliability of the Comprehensive Ocean–Atmosphere Dataset (COADS) Release 1a 2° monthly winds is tested by comparing it with instrumental measurements in the northwest Atlantic from 1981 to 1991. The instrumental dataset contains anemometer measurements of a very high homogeneity and quality, which were taken by six research sister ships with known anemometer heights in the northwest Atlantic. Special data processing was made with instrumental samples to provide compatibility with the COADS winds. Comparison shows overestimation of the COADS winds in the low ranges and underestimation of the strong and moderate winds. Application of the alternative equivalent Beaufort scales does not remove this bias and makes it even more pronounced. Thus, the conclusion is made that the disagreement obtained results primarily from the uncertainties of anemometer measurements in COADS, especially from the incorrect evaluation of the true wind. Instrumental data also do not indicate significant long-term interannual changes, which are pronounced in the COADS dataset for the 1980s. Some regional features of the comparison are discussed.

Description: A model of the interactive effects of disturbance and productivity on diversity predicts peak diversity to shift towards higher disturbance regimes as productivity increases, confining the Intermediate Disturbance Hypothesis to intermediate productivity levels. We conducted a two-factorial (disturbance, nutrients) field experiment to test the validity of this model for two subtropical intertidal rocky shores. Treatment responses varied between distinct community types at two sites. Intensified disturbance increased evenness, and under high nutrient enrichment decreased species richness of communities dominated by encrusting algae, whereas turf-dominated communities remained unaffected. Nutrient additions increased biomass and modulated community composition at both sites, in addition to increasing species richness in encrusting-algal and decreasing evenness of turf-forming assemblages. Thus, only highly enriched encrusting-algal communities followed the model predictions. Different mechanisms appear to control species coexistence in different types of communities, some violating the assumptions of the tested model, i.e. resource limitation and competitive exclusion.

Description: The eddy correlation technique is rapidly becoming an established method for resolving dissolved oxygen fluxes in natural aquatic systems. This direct and noninvasive determination of oxygen fluxes close to the sediment by simultaneously measuring the velocity and the dissolved oxygen fluctuations has considerable advantages compared to traditional methods. This paper describes the measurement principle and analyzes the spatial and temporal scales of those fluctuations as a function of turbulence levels. The magnitudes and spectral structure of the expected fluctuations provide the required sensor specifications and define practical boundary conditions for the eddy correlation instrumentation and its deployment. In addition, data analysis and spectral corrections are proposed for the usual nonideal conditions, such as the time shift between the sensor pair and the limited frequency response of the oxygen sensor. The consistency of the eddy correlation measurements in a riverine reservoir has been confirmed—observing a night–day transition from oxygen respiration to net oxygen production, ranging from −20 to +5 mmol m−2 day−1—by comparing two physically independent, eddy correlation instruments deployed side by side. The natural variability of the fluctuations calls for at least ∼1 h of flux data record to achieve a relative accuracy of better than ∼20%. Although various aspects still need improvement, eddy correlation is seen as a promising and soon-to-be widely applied method in natural waters.

Description: Some studies of ocean climate model experiments suggest that regional changes in dynamic sea level could provide a valuable indicator of trends in the strength of the Atlantic meridional overturning circulation (MOC). This paper describes the use of a sequence of global ocean–ice model experiments to show that the diagnosed patterns of sea surface height (SSH) anomalies associated with changes in the MOC in the North Atlantic (NA) depend critically on the time scales of interest. Model hindcast simulations for 1958–2004 reproduce the observed pattern of SSH variability with extrema occurring along the Gulf Stream (GS) and in the subpolar gyre (SPG), but they also show that the pattern is primarily related to the wind-driven variability of MOC and gyre circulation on interannual time scales; it is reflected also in the leading EOF of SSH variability over the NA Ocean, as described in previous studies. The pattern, however, is not useful as a “fingerprint” of longer-term changes in the MOC: as shown with a companion experiment, a multidecadal, gradual decline in the MOC [of 5 Sv (1 Sv ≡ 106 m3 s−1) over 5 decades] induces a much broader, basin-scale SSH rise over the mid-to-high-latitude NA, with amplitudes of 20 cm. The detectability of such a trend is low along the GS since low-frequency SSH changes are effectively masked here by strong variability on shorter time scales. More favorable signal-to-noise ratios are found in the SPG and the eastern NA, where a MOC trend of 0.1 Sv yr−1 would leave a significant imprint in SSH already after about 20 years.

Description: Prevention of epibiosis is of vital importance for most aquatic organisms, which can have consequences for their ability to invade new areas. Surface microtopography of the shell periostracum has been shown to have antifouling properties for mytilid mussels, and the topography shows regional differences. This article examines whether an optimal shell design exists and evaluates the degree to which shell microstructure is matched with the properties of the local fouling community. Biomimics of four mytilid species from different regional provenances were exposed at eight different sites in both northern and southern hemispheres. Tendencies of the microtopography to both inhibit and facilitate fouling were detected after 3 and 6 weeks of immersion. However, on a global scale, all microtopographies failed to prevent fouling in a consistent manner when exposed to various fouling communities and when decoupled from other shell properties. It is therefore suggested that the recently discovered chemical anti-microfouling properties of the periostracum complement the anti-macrofouling defence offered by shell microtopography.

Description: Changes in the ventilation of the oxygen minimum zone (OMZ) of the tropical North Atlantic are studied using oceanographic data from 18 research cruises carried out between 28.5° and 23°W during 1999–2008 as well as historical data referring to the period 1972–85. In the core of the OMZ at about 400-m depth, a highly significant oxygen decrease of about 15 μmol kg−1 is found between the two periods. During the same time interval, the salinity at the oxygen minimum increased by about 0.1. Above the core of the OMZ, within the central water layer, oxygen decreased too, but salinity changed only slightly or even decreased. The scatter in the local oxygen–salinity relations decreased from the earlier to the later period suggesting a reduced filamentation due to mesoscale eddies and/or zonal jets acting on the background gradients. Here it is suggested that latitudinally alternating zonal jets with observed amplitudes of a few centimeters per second in the depth range of the OMZ contribute to the ventilation of the OMZ. A conceptual model of the ventilation of the OMZ is used to corroborate the hypothesis that changes in the strength of zonal jets affect mean oxygen levels in the OMZ. According to the model, a weakening of zonal jets, which is in general agreement with observed hydrographic evidences, is associated with a reduction of the mean oxygen levels that could significantly contribute to the observed deoxygenation of the North Atlantic OMZ.

Description: The Rio Grande Rise acts as a natural barrier for the equatorward flow of Antarctic Bottom Water in the subtropical South Atlantic. In addition to the Vema Channel, the Hunter Channel cuts through this obstacle and offers a separate route for bottom-water import into the southern Brazil Basin. On the occasion of the Deep Basin Experiment, a component of the World Ocean Circulation Experiment (WOCE), the expected deep flow through the Hunter Channel was directly observed for the first time by an array of moored current meters and thermistor chains from December 1992 to May 1994. Main results are (i) the Hunter Channel is, in fact, a conduit for bottom-water flow into the Brazil Basin. Our new mean transport from moored current meters [2.92 (±1.24) × 106 m3 s−1] is significantly higher than earlier estimates that were based on geostrophic calculations. (ii) During the WOCE observational period a tendency toward increased bottom-water temperatures was observed. This observation from the Hunter Channel is consistent with findings from the Vema Channel. (iii) The overflow through the Hunter Channel is highly variable and puts in perspective earlier synoptic geostrophic transport estimates

Description: The capture of 52 specimens of the cirrate octopod Grimpoteuthis glacialis (Robson, 1930), of dorsal mantle length 20-165 mm during a 1996 trawling survey near the Antarctic Peninsula allowed the basic biology of the species to be examined. Their presence in bottom trawls at depths of 333-879 m, but their absence from benthopelagic and pelagic trawls, is consistent with a primarily benthic habitat. The largest single sample, 40 animals, came from a soft mud bottom and highlights the patchy nature of the distribution. Males tended to be bigger in total length and mass than females of similar mantle length. The males, however, were mature at a smaller size. Mature males have tiny sperm packets, rather than typical cephalopod spermatophores, in their distal reproductive tract. Mature females have large, smooth eggs in the proximal oviduct, in the huge oviducal gland and in the distal oviduct. Eggs in the distal oviduct have a thick, sticky coating that hardens in seawater into a secondary egg case. Ovarian eggs vary greatly in size, possibly indicating protracted egg laying. Observations on live animals indicate that the species swims primarily by fin action, rather than by jetting or medusoid pulses with the arm/web complex. It may be capable of limited changes in colour pattern, especially on the oral surface of the web. Three pairs of surface structures that appear superficially to be white spots anterior to the eyes and near the bases of the fins are actually transparent patches in the skin. When considered in association with the transparent subdermal layer and the anatomy of the eyes, optic nerves and optic lobes, these clear patches seem to function in detecting unfocused light on the horizontal plane of the benthic animal.

Description: The mean warm water transfer toward the equator along the western boundary of the South Atlantic is investigated, based on a number of ship surveys carried out during 1990–96 with CTD water mass observations and current profiling by shipboard and lowered (with the CTD/rosette) acoustic Doppler current profiler and with Pegasus current profiler. The bulk of the northward warm water flow follows the coast in the North Brazil Undercurrent (NBUC) from latitudes south of 10°S, carrying 23 Sv (Sv ≡ 106 m3 s−1) above 1000 m. Out of this, 16 Sv are waters warmer than 7°C that form the source waters of the Florida Current. Zonal inflow from the east by the South Equatorial Current enters the western boundary system dominantly north of 5°S, adding transport northwest of Cape San Roque, and transforming the NBUC along its way toward the equator into a surface-intensified current, the North Brazil Current (NBC). From the combination of moored arrays and shipboard sections just north of the equator along 44°W, the mean NBC transport was determined at 35 Sv with a small seasonal cycle amplitude of only about 3 Sv. The reason for the much larger near-equatorial northward warm water boundary current than what would be required to carry the northward heat transport are recirculations by the zonal current system and the existence of the shallow South Atlantic tropical–subtropical cell (STC). The STC connects the subduction zones of the eastern subtropics of both hemispheres via equatorward boundary undercurrents with the Equatorial Undercurrent (EUC), and the return flow is through upwelling and poleward Ekman transport. The persistent existence of a set of eastward thermocline and intermediate countercurrents on both sides of the equator was confirmed that recurred throughout the observations and carry ventilated waters from the boundary regime into the tropical interior. A strong westward current underneath the EUC, the Equatorial Intermediate Current, returns low-oxygen water westward. Consistent evidence for the existence of a seasonal variation in the warm water flow south of the equator could not be established, whereas significant seasonal variability of the boundary regime occurs north of the equator: northwestward alongshore throughflow of about 10 Sv of waters with properties from the Southern Hemisphere was found along the Guiana boundary in boreal spring when the North Equatorial Countercurrent is absent or even flowing westward, whereas during June–January the upper NBC is known to connect with the eastward North Equatorial Countercurrent through a retroflection zone that seasonally migrates up and down the coast and spawns eddies. The equatorial zone thus acts as a buffer and transformation zone for cross-equatorial exchanges, but knowledge of the detailed pathways in the interior including the involved diapycnal exchanges is still a problem.

Description: In this study, the authors discuss two different parameterizations for the effect of mixed layer eddies, one based on ageostrophic linear stability analysis (ALS) and the other one based on a scaling of the potential energy release by eddies (PER). Both parameterizations contradict each other in two aspects. First, they predict different functional relationships between the magnitude of the eddy fluxes and the Richardson number (Ri) related to the background state. Second, they also predict different vertical structure functions for the horizontal eddy fluxes. Numerical simulations for two different configurations and for a large range of different background conditions are used to evaluate the parameterizations. It turns out that PER is better suited to capture the Ri dependency of the magnitude of the eddy fluxes. On the other hand, the vertical structure of the meridional eddy fluxes predicted by ALS is more accurate than that of PER, while the vertical structure of the vertical eddy fluxes is well predicted by both parameterizations. Therefore, this study suggests the use of the magnitude of PER and the vertical structure functions of ALS for an improved parameterization of mixed layer eddy fluxes.

Description: Mid-latitudinal cyclones are a key factor for understanding regional anomalies in primary meteorological parameters such as temperature or precipitation. Extreme cyclones can produce notable impacts on human society and economy, for example, by causing enormous economic losses through wind damage. Based on 41 annually initialised (1961–2001) hindcast ensembles, this study evaluates the ability of a single-model decadal forecast system (MPI-ESM-LR) to provide skilful probabilistic three-category forecasts (enhanced, normal or decreased) of winter (ONDJFM) extra-tropical cyclone frequency over the Northern Hemisphere with lead times from 1 yr up to a decade. It is shown that these predictions exhibit some significant skill, mainly for lead times of 2–5 yr, especially over the North Atlantic and Pacific. Skill for intense cyclones is generally higher than for all detected systems. A comparison of decadal hindcasts from two different initialisation techniques indicates that initialising from reanalysis fields yields slightly better results for the first forecast winter (month 10–15), while initialisation based on an assimilation experiment provides better skill for lead times between 2 and 5 yr. The reasons and mechanisms behind this predictive skill are subject to future work. Preliminary analyses suggest a strong relationship of the model’s skill over the North Atlantic with the ability to predict upper ocean temperatures modulating lower troposphere baroclinicity for the respective area and time scales.

Description: The bright colouration of the cytoplasm in intertidal rotaliid foraminifera and their particle-gathering activity reliably reveals live specimens in fresh samples, without any fixatives or dyes applied. Using this approach, we demonstrate that live representatives of three rotaliid species, all belonging to the genus Elphidium, were common on intertidal mud and sand beaches. Two species, E. excavatum clavatum and E. albiumbilicatum, lived close to freshwater outflows, whereas E. williamsoni occupied beaches bathed by waters with normal salinity (surface 26–27‰ in the western White Sea). A least 13 species were found alive in the intertidal zone. Among non-calcareous foraminifera, Miliammina fusca, Ammotium cassis and Ovammina opaca were the most numerous.

Description: According to historical data, the glacial relict higher crustaceans, Mysis relicta and Pallaseopsis quadrispinosa, as well as a plankton crustacean Limnocalanus macrurus had earlier been recorded in Lake Drüksiai. Our data and investigations of other authors evidence that these crustaceans no longer inhabit the lake. What are the prospects for the recovery of these crustaceans after restoring the natural thermal regime in Lake Drüksiai? One of the possibilities is to reintroduce these species after restoring the natural thermal regime in the lake and improving dissolved oxygen level in the hypolimnion, which would provide conditions for long-term survival and recovery of populations of these crustaceans. As reintroduction of relict species is rather costly, it is necessary to assess effectiveness of such works.

Description: Northern Hemisphere stratospheric variability is investigated with respect to chaotic behavior using time series from three different variables extracted from four different reanalysis products and two numerical model runs with different forcing. The time series show red spectra at all frequencies and the probability distribution functions show persistent deviations from a Gaussian distribution. An exception is given by the numerical model forced with perpetual winter conditions—a case that shows more variability and follows a Gaussian distribution, suggesting that the deviation from Gaussianity found in the observations is due to the transition between summer and winter variability. To search for the presence of a chaotic attractor the correlation dimension and entropy, the Lyapunov spectrum, and the associated Kaplan–Yorke dimension are estimated. A finite value of the dimensions can be computed for each variable and data product, with the correlation dimension ranging between 3.0 and 4.0 and the Kaplan–Yorke dimension between 3.3 and 5.5. The correlation entropy varies between 0.6 and 1.1. The model runs show similar values for the correlation and Lyapunov dimensions for both the seasonally forced run and the perpetual-winter run, suggesting that the structure of a possible chaotic attractor is not determined by the seasonality in the forcing, but must be given by other mechanisms.

Description: Cytochromes P450 (P450) and associated monooxygenases are a family of heme proteins involved in metabolism of endogenous compounds (arachidonic acid, eicosanoids and prostaglandins) as also xenobiotics including drugs and environmental chemicals. Liver is the major organ involved in P450-mediated metabolism and hepatic enzymes have been characterized. Extrahepatic organs, such as lung, kidney and brain have the capability for biotransformation through P450 enzymes. Brain, including human brain, expresses P450 enzymes that metabolize xenobiotics and endogenous compounds. AREAS COVERED: An overview of P450-mediated metabolism in brain is presented focusing on distinct differences seen in expression of P450 enzymes, generation of unique P450 enzymes in brain through alternate splicing and their consequences in terms of metabolism of psychoactive drugs and inflammatory prompts, such as leukotrienes, thus modulating inflammatory response. EXPERT OPINION: The brain possesses unique P450s that metabolize drugs and endogenous compounds through pathways that are markedly different from that seen in liver indicating that extrapolation directly from liver to brain is not appropriate. It is therefore necessary to characterize the unique brain P450s and their ability to metabolize xenobiotics and endogenous compounds to better understand the functions of this important class of enzymes in brain, especially human brain.

Description: Southern Hemisphere (SH) stratospheric variability is investigated with respect to chaotic behavior using time series from three different variables extracted from four different reanalysis products. The results are compared with the same analysis applied to the Northern Hemisphere (NH). The probability density functions (PDFs) for the SH show persistent deviations from a Gaussian distribution. The variability is given by white spectra for low frequencies, a slope of −1 for intermediate frequencies, and −3 slopes for high frequencies. Considering the time series for winter and summer separately, PDFs show a Gaussian distribution and the variability spectra change their slopes, indicating the role of the transition between winter and summer variability in shaping the time series. The correlation (D2) and the Kaplan–Yorke (DKY) dimensions are estimated. A finite value of the dimensions can be computed for each variable and data product, except for the NCEP zonal-mean zonal wind and temperature data, which violate the requirement D2 ≤ DKY, possibly owing to the presence of spurious trends and inconsistencies in the data. The value of D2 ranges between 2.6 and 3.9, while DKY ranges between 3.0 and 4.5. The results show that both D2 and DKY display large variability in their values both for different datasets and for different variables within the same dataset. The variability of the values of D2 and DKY thus leaves open the question about the existence of a low-dimensional attractor or if the finite dimensions of the system are the result of the projection of a larger attractor in a low-dimensional embedding space.

Description: Exposure of Fucus spiralis germlings to precise copper concentrations (0 to 844 nM Cu2+) in chemically defined medium demonstrated a relationship between urltrastructural changes and growth retardation with increasing copper concentration. Electron-translucent vesicles, present in ova, which normally disappear after fertilization, accumulated in germlings exposed to Cu2+ above 10.6 nM, suggesting that copper may inhibit a metabolic pathway involved in cell wall formation which is initiated by fertilization No membrane damage was observed during the exposure period. During a post-exposure period in copper-free medium, recovery occurred (rhizoid extension, apical hair formation) in germlings previously exposed to concentrations below 106 nM Cu2+ and electron-translucent vesicles became granular and disappeared. It is proposed that the electron-translucent vesicles contain a cell wall precursor and that copper inhibits its incorporation into the cell wall, preventing growth and development of the zygote.

Description: The important role of marine epibiotic biofilms in the interactions of the host with its environment has been acknowledged recently. Previous studies with the temperate brown macroalga Fucus vesiculosus have identified polar and non-polar compounds recovered from the algal surface that have the potential to control such biofilms. Furthermore, both the fouling pressure and the composition of the epibiotic bacterial communities on this macroalga varied seasonally. The extent to which this reflects a seasonal fluctuation of the fouling control mechanisms of the host is, however, unexplored in an ecological context. The present study investigated seasonal variation in the anti-settlement activity of surface extracts of F. vesiculosus against eight biofilm-forming bacteria isolated from rockweed-dominated habitats, including replication of two populations from two geographically distant sites. The anti-settlement activity at both sites was found to vary temporally, reaching a peak in summer/autumn. Anti-settlement activity also showed a consistent and strong difference between sites throughout the year. This study is the first to report temporal variation of antifouling defence originating from ecologically relevant surface-associated compounds.

Description: In the present paper a hydrostatic “reduced gravity” model, generally used to simulate transient bottom-arrested gravity plumes, was coupled with a sediment transport model. The coupled model considers the respective contribution of suspended sediment particles on the buoyancy of a plume and allows one to simulate autosuspension and size-differential deposition of sediments based on the local turbulence and settling velocities. Simulations using the coupled model reveal that sediment-enriched plumes are able to inject both entrained and original shelf water masses into intermediate and bottom layers of an adjacent ocean basin in an ageostrophic dynamical balance. Hence the mechanism described here is more rapid than classic, “seawater” plumes, which are solely driven by surplus density of the water masses. Results suggest that “turbidity” plumes may constitute an important process in the formation and renewal of deep waters in the Arctic Ocean. In case a turbidity plume reaches its level of equilibrium density, deposition of suspended particles causes the density of the interstitial fluid to be lower than the density of the ambient fluid. This initiates upward convection within the water column. The substantial difference between TS- and turbidity plumes is described by model experiments that utilize idealized slope and sediment distributions. A realistic simulation of a turbidity plume cascading down the continental slope of the western Barents Sea is presented. The computed distribution of deposited sediments agrees well with observations in an area of high accumulation of shelf-derived sediments. The frequency of occurrence of sediment-enriched gravity plumes originating from the Barents Sea shelf is estimated from the various geological variables (thickness of sediments at the bottom, grain size composition) measured from bottom sediments samples.

Description: The Denmark Strait Overflow (DSO) supplies about one-third of the North Atlantic Deep Water and is critical to global thermohaline circulation. Knowledge of the pathways of DSO through the Irminger Basin and its transformation there is still incomplete, however. The authors deploy over 10 000 Lagrangian particles at the Denmark Strait in a high-resolution ocean model to study these issues. First, the particle trajectories show that the mean position and potential density of dense waters cascading over the Denmark Strait sill evolve consistently with hydrographic observations. These sill particles transit the Irminger Basin to the Spill Jet section (65.25°N) in 5–7 days and to the Angmagssalik section (63.5°N) in 2–3 weeks. Second, the dense water pathways on the continental shelf are consistent with observations and particles released on the shelf in the strait constitute a significant fraction of the dense water particles recorded at the Angmagssalik section within 60 days (~25%). Some particles circulate on the shelf for several weeks before they spill off the shelf break and join the overflow from the sill. Third, there are two places where the water density following particle trajectories decreases rapidly due to intense mixing: to the southwest of the sill and southwest of the Kangerdlugssuaq Trough on the continental slope. After transformation in these places, the overflow particles exhibit a wide range of densities.

Description: The sensitivities of the Brewer–Dobson circulation (BDC) to different distributions of tropical SST heating are investigated in an idealized aquaplanet model. It is found that an increase in tropical SSTs generally leads to an acceleration of tropical upwelling and an associated reduction in the age of air (AOA) in the polar stratosphere and that the AOA near the subtropical tropopause is correlated with local isentropic mixing of tropospheric air with stratospheric air. The zonal distribution of SST perturbations has a major impact on the vertical and meridional structure of the BDC as compared with other SST characteristics. Zonally localized SST heatings tend to generate a shallow acceleration of the stratospheric residual circulation, enhanced isentropic mixing associated with a weakened stratospheric jet, and a reduction in AOA mostly within the polar vortex. In contrast, SST heatings with a zonally symmetric structure tend to produce a deep strengthening of the stratospheric residual circulation, suppressed isentropic mixing associated with a stronger stratospheric jet, and a decrease of AOA in the entire stratosphere. The shallow versus deep strengthening of the stratospheric residual circulation change has been linked to wave propagation and dissipation in the subtropical lower stratosphere rather than wave generation in the troposphere, and the former can be strongly affected by the vertical position of the subtropical jet. These results suggest that, while the longitudinally localized SST trends under climate change may contribute to the change in the shallow branch of the BDC, the upward shift of the subtropical jet associated with the zonal SST heating can impact the deep branch of the BDC.

Description: The authors test the hypothesis that recent observed trends in surface westerlies in the Southern Hemisphere are directly consequent on observed trends in the timing of stratospheric final warming events. The analysis begins by verifying that final warming events have an impact on tropospheric circulation in a simplified GCM driven by specified equilibrium temperature distributions. Seasonal variations are imposed in the stratosphere only. The model produces qualitatively realistic final warming events whose influence extends down to the surface, much like what has been reported in observational analyses. The authors then go on to study observed trends in surface westerlies composited with respect to the date of final warming events. If the considered hypothesis were correct, these trends would appear to be much weaker when composited with respect to the date of the final warming events. The authors find that this is not the case, and accordingly they conclude that the observed surface changes cannot be attributed simply to this shift toward later final warming events.

Description: The mussel Mytilus galloprovincialis is a common aquaculture species, and also a major fouling organism that has negative economic impacts. There are no standard assay conditions for this important species and therefore, this study quantified the effect of key factors on the settlement of pediveligers and plantigrades. Density dependent settlement did not occur for either pediveligers or plantigrades. Settlement increased in drop assays in a 12 h light:12 h dark cycle, while bottom shade had no effect of any magnitude. In addition, settlement was significantly enhanced by storing pediveligers for between 4 and 24 days at 4 °C. Overall, these data provide the template to optimise and standardise static laboratory settlement assays for mussels in order to develop materials that either enhance settlement for the aquaculture industry, or deter settlement for antifouling applications. Furthermore, simple mechanisms such as storage at 4 °C can enhance settlement beyond current methods used in aquaculture hatcheries.

Description: The mean pressures required to collapse gas vesicles in turgid cells of cyanobacteria from the Baltic Sea were 0·91 MPa (9·1 bar) in Aphanizomenon flos-aquae, 0·83 MPa in Nodularia sp. collected from the main deep basins and 0·34 MPa in Nodularia from shallower coastal regions. The gas vesicles were strong enough to withstand the depth of winter mixing, down to the permanent halocline (60 m in the Bornholm Sea, 90 m in the Eastern Gotland Sea) or to the sea bottom (30 m or less in the shallow Arkona Sea and Mecklenburg Bight). The cyanobacteria had low cell turgor pressures, within the range 0·08–0·18 MPa. The colonies were highly buoyant: the Aphanizomenon colonies floated up at a mean velocity of 22 m per day and the Nodularia colonies at 36 m per day. The colonies remained floating when up to half of the gas vesicles had been collapsed. In summer the cyanobacteria were mostly restricted to the water above the thermocline and in calm conditions their concentration increased towards the top of the water column. A series of colony concentration profiles indicated that, following a deep mixing event, the population of colonies moved upward with a net velocity of 22 m per day, similar to the colony floating velocity. This demonstrated that the buoyancy provided by gas vesicles would give a selective advantage to populations of cyanobacteria by enabling them to float into the higher irradiance of the near-surface water.

Description: The Atlantic meridional overturning circulation (AMOC) makes the strongest oceanic contribution to the meridional redistribution of heat. Here, an observation-based, forty-eight-month-long time series of the vertical structure and strength of the AMOC at 26.5°N is presented. From April 2004 to April 2008 the AMOC had a mean strength of 18.7 ±2.1 Sv with fluctuations of 4.8 Sv rms. The best guess of the peak-to-peak amplitude of the AMOC seasonal cycle is 6.7 Sv, with a maximum strength in autumn and a minimum in spring. While seasonality in the AMOC was commonly thought to be dominated by the northward Ekman transport, this study reveals that fluctuations of the geostrophic mid-ocean and Gulf Stream transports of 2.2 Sv and 1.7 Sv rms, respectively, are substantially larger than those of the Ekman component (1.2 Sv rms). A simple model based on linear dynamics suggests that the seasonal cycle is dominated by wind stress curl forcing at the eastern boundary of the Atlantic. Seasonal geostrophic AMOC anomalies might represent an important and previously underestimated component of meridional transport and storage of heat in the subtropical North Atlantic. There is evidence that the seasonal cycle observed here is representative of much longer intervals. Previously, hydrographic snapshot estimates between 1957 and 2004 had suggested a long-term decline of the AMOC by 8 Sv. This study suggests that aliasing of seasonal AMOC anomalies might have accounted for a large part of the inferred slowdown.

Description: The buoyancy flux at the air/sea interface plays a key role in water mass transformation and mixing as it modifies surface water density and in turn drives overturning and enhances stratification. It is the interplay of these two independent heat and freshwater buoyancy flux components that is of central importance when analysing mechanisms of the ocean/atmosphere interaction. Here, a diagnostic quantity (ΘB) is presented that allows to capture the relative contribution of both components on the buoyancy flux in one single quantity. Using NCEP reanalysis of heat and freshwater fluxes (1948–2009) demonstrates that ΘB is a convenient tool to analyse both the temporal and spatial variability of their corresponding buoyancy fluxes. For the global ocean the areal extent of buoyancy gain and loss regions changed by 10%, with the largest extent of buoyancy gain during the 1970–1990 period. In the subpolar North Atlantic, and likewise in the South Pacific, decadal variability in freshwater flux is pronounced and, for the latter region, takes control over the total buoyancy flux since the 1980s. Some of the areal extent time series show a significant correlation with large-scale climate indices.

Description: The chemical defence against microfouling in the brown seaweed Fucus vesiculosus was investigated and an inhibitor of bacterial settlement was isolated by bioassay-guided fractionation of non-polar surface extracts. UV-vis and mass spectrometry were used to identify the compound as the carotenoid fucoxanthin. The metabolite was tested at the natural concentration (in a surface volume based assay) against the settlement of four bacterial strains isolated from F. vesiculosus and 11 strains isolated from co-occurring algae and marine sediment. Surface concentrations between 1.4 and 6 μg cm-2 resulted in 50% inhibition of four of these isolates, which were studied in more detail using a surface area-based assay, while a fifth isolate proved to be less sensitive. The presence of fucoxanthin on the surface of F. vesiculosus was demonstrated with two different surface extraction methods. Fucoxanthin was detected at concentrations between 0.7 and 9 μg cm-2 on the algal surface. Fucoxanthin was still present at the algal surface after removal of associated diatoms through mechanical cleaning and germanium dioxide treatment and was thus mainly produced by F. vesiculosus rather than by diatoms. Thus, the photosynthetic pigment fucoxanthin appears to be ecologically relevant as a surface-associated antimicrobial agent, acting against the settlement of bacteria on the surface of the macroalga F. vesiculosus.

Description: The “rugophilic”; behaviour (e.g. the preference for settling in concavities) of barnacles is well documented. In contrast, little is known about settlement preferences of other species with regard to surface microtopography. In a randomized block design, five different rugosities (smooth, 0.1 mm, 0.5 mm, 1 mm, 5 mm) were exposed to natural fouling in the Baltic Sea. In four experiments, test panels were colonized by Mytilus edulis, Polydora dliata, Balanus improvisus, diatoms, hydrozoa, bryozoa, and several ciliates. Settlement densities and microtopographical preferences for pits or elevations as a function of grain size were evaluated. Rugosities influenced settlement densities and the microtopographical preferences of almost all investigated species. Settlement densities were generally lowest on smooth panels, with most species showing distinct preferences for different rugosities. While a preference for pits was frequent, in some species the proportion of individuals settling on elevations significantly increased with roughness. These data on microtopographical preferences of different species give new insights into interactions between settlement behaviour, surface roughness, boundary layer hydrodynamics and community structure.

Description: Quantile mapping is routinely applied to correct biases of regional climate model simulations compared to observational data. If the observations are of similar resolution as the regional climate model, quantile mapping is a feasible approach. However, if the observations are of much higher resolution, quantile mapping also attempts to bridge this scale mismatch. Here, it is shown for daily precipitation that such quantile mapping-based downscaling is not feasible but introduces similar problems as inflation of perfect prognosis ("prog") downscaling: the spatial and temporal structure of the corrected time series is misrepresented, the drizzle effect for area means is overcorrected, area-mean extremes are overestimated, and trends are affected. To overcome these problems, stochastic bias correction is required.

Description: The copepod family Oncaeidae is widely distributed in the world's oceans and includes many small and abundant species. Due to their small size and the existence of sister and sibling species in different parts of the ocean, species identification is very difficult. Quantitative studies on copepod communities usually consider oncaeids at the family level only, or present uncertain species names, when based on regional identification keys not established for the study area. This paper aims to develop the basis for an improved taxonomic resolution of oncaeids in ecological studies. It summarizes the most relevant morphological elements to characterize the seven presently known genera and to define in addition 16 species groups within the paraphyletic taxon Oncaea s.l. On this basis, a worldwide identification key for oncaeids is presently being developed, restricted to genera and species groups, with species included as far as the state of knowledge allows.

Description: A neural network (NN) has been developed in order to retrieve the cloud liquid water path (LWP) over the oceans from Special Sensor Microwave/Imager (SSM/I) data. The retrieval with NNs depends crucially on the SSM/I channels used as input and the number of hidden neurons—that is, the NN architecture. Three different combinations of the seven SSM/I channels have been tested. For all three methods an NN with five hidden neurons yields the best results. The NN-based LWP algorithms for SSM/I observations are intercompared with a standard regression algorithm. The calibration and validation of the retrieval algorithms are based on 2060 radiosonde observations over the global ocean. For each radiosonde profile the LWP is parameterized and the brightness temperatures (Tb’s) are simulated using a radiative transfer model. The best LWP algorithm (all SSM/I channels except T85V) shows a theoretical error of 0.009 kg m−2 for LWPs up to 2.8 kg m−2 and theoretical “clear-sky noise” (0.002 kg m−2), which has been reduced relative to the regression algorithm (0.031 kg m−2). Additionally, this new algorithm avoids the estimate of negative LWPs. An indirect validation and intercomparison is presented that is based upon SSM/I measurements (F-10) under clear-sky conditions, classified with independent IR-Meteosat data. The NN-based algorithms outperform the regression algorithm. The best LWP algorithm shows a clear-sky standard deviation of 0.006 kg m−2, a bias of 0.001 kg m−2, nonnegative LWPs, and no correlation with total precipitable water. The estimated accuracy for SSM/I observations and two of the proposed new LWP algorithms is 0.023 kg m−2 for LWP ⩽ 0.5 kg m−2.

Description: A quantitative relationship between observed sea-ice roughness and simulated large-scale deformation work is established in order to provide new means for model validation and a better representation of the sea-ice component in climate modelling. Sea-ice roughness is introduced as an additional prognostic variable in a dynamic–thermodynamic sea-ice model with a viscous-plastic rheology. It is defined as the accumulated work of internal forces acting upon an ice volume, given in energy per area. A fraction of this total deformation work is transferred to the potential energy stored in pressure ridges. Using ridge geometries and distribution functions from observations, observable quantities like mean pressure ridge height, ridge frequency as well as volumetric and areal fractions of deformed ice are derived from the simulated ice roughness. Comparisons of these simulated quantities with measurements (submarine-borne sonars, laser altimeters on helicopters) show good agreement. Satellite-borne observations of sea-ice roughness now under development will provide an even larger data set which will be used for model verification. Additionally roughness-dependent drag coefficients are introduced to account for the effect on the momentum exchange between ocean and atmosphere due to the form drag of roughness elements. The simulations indicate that the inclusion of sea-ice roughness provides for a more realistic representation of the boundary layer processes in climate models.

Description: A two-leg cruise of R/V G. O. Sars in summer of 2004 along the Mid-Atlantic Ridge explored the diversity and distribution patterns of pelagic and non-hydrothermal bottom communities in the vicinity of the northern Mid-Atlantic Ridge. In total, 1295 cephalopods were caught, representing 56 species. Differences in species composition and size were apparent among the various types of trawls used. The Aakra trawl and bottom trawl caught the largest numbers of species (38 and 34, respectively); size of cephalopods was directly related to the size of the net. Many more species were caught in the southern part of the study area than farther north. The most abundant species was Gonatus steenstrupi, found mostly in the northern part of the study area. A few abundant species, such as Mastigoteuthis agassizii, were found throughout the region, with no clear indication that their northern or southern distributional limits occur within the area sampled. Several benthic and one pelagic species, all taken in small numbers, were captured only in the region of the Charlie Gibbs Fracture Zone. We found many species at very low numbers (i.e. 37 species with 〈10 specimens in all gear types combined).

Description: An initially resting ocean of stratification N is considered, subject to buoyancy loss at its surface of magnitude B0 over a circular region of radius r, at a latitude where the Coriolis parameter is f. Initially the buoyancy loss gives rise to upright convection as an ensemble of plumes penetrates the stratified ocean creating a vertically mixed layer. However, as deepening proceeds, horizontal density gradients at the edge of the forcing region support a geostrophic rim current, which develops growing meanders through baroclinic instability. Eventually finite-amplitude baroclinic eddies sweep stratified water into the convective region at the surface and transport convected water outward and away below, setting up a steady state in which lateral buoyancy flux offsets buoyancy loss at the surface. In this final state quasi-horizontal baroclinic eddy transfer dominates upright “plume” convection. By using “parcel theory” to consider the energy transformations taking place, it is shown that the depth, hfinal at which deepening by convective plumes is arrested by lateral buoyancy flux due to baroclinic eddies, and the time tfinal it takes to reach this depth, is given by both independent of rotation. Here γ and β are dimensionless constants that depend on the efficiency of baroclinic eddy transfer. A number of laboratory and numerical experiments are then inspected and carried out to seek confirmation of these parameter dependencies and obtain quantitative estimates of the constants. It is found that γ = 3.9 ± 0.9 and β = 12 ± 3. Finally, the implications of our study to the understanding of integral properties of deep and intermediate convection in the ocean are discussed.

Description: This paper describes, and establishes the dynamical mechanisms responsible for, the large-scale, time-mean, midlatitude circulation in a high-resolution model of the North Atlantic basin. The model solution is compared with recently proposed transport schemes and interpretations of the dynamical balances operating in the sub-tropical gyre. In particular, the question of the degree to which Sverdrup balance holds for the subtropical gyre is addressed. At 25°N, thermohaline-driven bottom flows cause strong local departures from the Sverdrup solution for the vertically integrated meridional mass transport, but these nearly integrate to zero across the interior of the basin. In the northwestern region of the subtropical gyre, in the vicinity of the Gulf Stream, higher-order dynamics become important, and linear vorticity dynamics is unable to explain the model's vertically integrated transport. In the subpolar gyre, the model transport bears little resemblance to the Sverdrup prediction, and higher-order dynamics are important across the entire longitudinal extent of the basin. The sensitivity of the model transport amplitudes, patterns, and dynamical balances are estimated by examining the solutions under a range of parameter choices and for four different wind stress forcing specifications. Taking into account a deficit of 7–10 Sv (Sv ≡ 106 m3 s−1) in the contribution of the model thermohaline circulation to the meridional transports at 25°N, the wind stress climatology of Isemer and Hasse appears to yield too strong of a circulation, while that derived from the NCAR Community Climate Model yields too weak of a circulation. The Hellerman and Rosenstein and ECMWF climatologies result in wind-driven transports close to observational estimates at 25°N. The range between cases for the annual mean southward transport in the interior above 1000 m is 14 Sv, which is 40%–70% of the mean transport itself. There is little sensitivity to the model closure parameters at this latitude. At 55°N, in the subpolar gyre, there is little sensitivity of the model solution to the choice of either closure parameters or wind climatology, despite large differences in the Sverdrup transports implied by the different wind stress datasets. Large year to year variability of the meridional transport east of the Bahamas makes it difficult to provide robust estimates of the sensitivity of the Antilles and deep western boundary current systems to forcing and parameter changes.

Description: A 12-month mooring record (May 1994–June 1995), together with accompanying PALACE float data, is used to describe an annual cycle of deep convection and restratification in the Labrador Sea. The mooring is located at 56.75°N, 52.5°W, near the former site of Ocean Weather Station Bravo, in water of 3500 m depth. This is a pilot experiment for climate monitoring, and also for studies of deep-convection dynamics. Mooring measurements include temperature (T), salinity (S), horizontal and vertical velocity, and acoustic measurement of surface winds. The floats made weekly temperature–salinity profiles between their drift level (near 1500 m) and the surface. With moderately strong cooling to the atmosphere (300 W m−2 averaged from November to March), wintertime convection penetrated from the surface to about 1750 m, overcoming the stabilizing effect of upper-ocean low-salinity water. The water column restratifies rapidly after brief vertical homogenization (in potential density, salinity, and potential temperature). Both the rapid restratification and the energetic high-frequency variations of T and S observed at the mooring are suggestive of a convection depth that varies greatly with location. Lateral variations in T and S exist down to very small scales, and these remnants of convection decay (with e-folding time 170 day) after convection ceases. Lateral variability at the scale of 100 km is verified by PALACE profiles. The Eulerian mooring effectively samples the convection in a mesoscale region of ocean as eddies sweep past it; the Lagrangian PALACE floats are complementary in sampling the geography of deep convection more widely. This laterally variable convection leaves the water column with significant vertical gradients most of the year. Convection followed by lateral mixing gives vertical salinity profiles the (misleading) appearance that a one-dimensional diffusive process is fluxing freshwater downward. During spring, summer, and fall the salinity, temperature, and buoyancy rise steadily with time throughout most of the water column. This is likely the result of mixing with the encircling boundary currents, compensating for the escape of Labrador Sea Water from the region. Low-salinity water mixes into the gyre only near the surface. The water-column heat balance is in satisfactory agreement with meteorological assimilation models. Directly observed subsurface calorimetry may be the more reliable indication of the annual-mean air–sea heat flux. Acoustic instrumentation on the mooring gave a surprisingly good time series of the vector surface wind. The three-dimensional velocity field consists of convective plumes of width 200 to 1000 m, vertical velocities of 2 to 8 cm s−1, and Rossby numbers of order unity, embedded in stronger (20 cm s−1) lateral currents associated with mesoscale eddies. Horizontal currents with timescales of several days to several months are strongly barotropic. They are suddenly energized as convection reaches great depth in early March, and develop toward a barotropic state, as also seen in models of convectively driven geostrophic turbulence in a weakly stratified, high-latitude ocean. Currents decay through the summer and autumn, apart from some persistent isolated eddies. These coherent, isolated, cold anticyclones carry cores of pure convected water long after the end of winter. Boundary currents nearby interact with the Labrador Sea gyre and provide an additional source of eddies in the interior Labrador Sea. An earlier study of the pulsation of the boundary currents is supported by observations of sudden ejection of floats from the central gyre into the boundary currents (and sudden ingestion of boundary current floats into the gyre interior), in what may be a mechanism for exchange between Labrador Sea Water and the World Ocean.

Description: A neural network is used to calculate the longwave net radiation (Lnet) at the sea surface from measurements of the Special Sensor Microwave/Imager (SSM/I). The neural network applied in this study is able to account largely for the nonlinearity between Lnet and the satellite-measured brightness temperatures (TB). The algorithm can be applied for instantaneous measurements over oceanic regions with the area extent of satellite passive microwave observations (30–60 km in diameter). Comparing with a linear regression method the neural network reduces the standard error for Lnet from 17 to 5 W m−2 when applied to model results. For clear-sky cases, a good agreement with an error of less than 5 W m−2 for Lnet between calculations from SSM/I observations and pyrgeometer measurements on the German research vessel Poseidon during the International Cirrus Experiment (ICE) 1989 is obtained. For cloudy cases, the comparison is problematic due to the inhomogenities of clouds and the low and different spatial resolutions of the SSM/I data. Global monthly mean values of Lnet for October 1989 are computed and compared to other sources. Differences are observed among the climatological values from previous studies by H.-J. Isemer and L. Hasse, the climatological values from R. Lindau and L. Hasse, the values of W. L. Darnell et al., and results from this study. Some structures of Lnet are similar for results from W. L. Darnell et al. and the present authors. The differences between both results are generally less than 15 W m−2. Over the North Atlantic Ocean the authors found a poleward increase for Lnet, which is contrary to the results of H.-J. Isemer and L. Hasse.

Description: This study investigated whether surface-associated compounds isolated from the macroalga Fucus vesiculosus had the potential to mediate microbial and/or macrobial epibiosis similar to that on the natural alga. To selectively yield thallus-associated compounds and avoid contamination by intracellular algal compounds, cell lysis was monitored by surface microscopy of algal cells and chemical profiling of algal surface extracts by coupled gas chromatography mass spectroscopy. The optimized extraction resulted in polar and non-polar algal surface extracts. The non-polar surface extract was immobilized in hydrogel, the polar surface extract was homogeneously perfused through the gel to ensure a temporally constant delivery of polar extract components. During a 7day field trial, bacterial biofilms were formed on control gels and gels featuring polar and/or non-polar extract components. PERMANOVA revealed that bacterial community profiles on controls and on gels featuring polar or non-polar extract were significantly different from the profile on F. vesiculosus, while the profile on the gels bearing both polar and non-polar extracts was not. Moreover, the polar surface extracts inhibited the settlement of barnacle cyprids. Considering the pronounced effects of bacterial biofilms on invertebrate larval settlement, these results suggest that algal surface chemistry affects macrofouling not only directly but also indirectly, via its control of biofilm formation and composition

Description: It was demonstrated previously that polar and non-polar surface extracts of the brown alga Fucus vesiculosus collected during winter from the Kiel Bight (Germany) inhibited bacterial attachment at natural concentrations. The present study describes the bioassay-guided identification of the active metabolites from the polar fraction. Chromatographic separation on a size-exclusion liquid chromatography column and bioassays identified an active fraction that was further investigated using nuclear magnetic resonance spectroscopy and mass spectrometry. This fraction contained the metabolites dimethylsulphopropionate (DMSP), proline and alanine. DMSP and proline caused the anti-attachment activity. The metabolites were further quantified on the algal surface together with its associated boundary layer. DMSP and proline were detected in the range 0.12–1.08 ng cm−2 and 0.09–0.59 ng cm−2, respectively. These metabolites were tested in the concentration range from 0.1 to 1000 ng cm−2 against the attachment of five bacterial strains isolated from algae and sediment co-occurring with F. vesiculosus. The surface concentrations for 50% inhibition of attachment of these strains were always 〈0.38 ng cm−2 for DMSP and in four cases 〈0.1 ng cm−2 for proline, while one strain required 1.66 ng cm−2 of proline for 50% inhibition. Two further bacterial strains that had been directly isolated from F. vesiculosus were also tested, but proved to be the least sensitive. This study shows that DMSP and proline have an ecologically relevant role as surface inhibitors against bacterial attachment on F. vesiculosus.

Description: Bacteria associated with Fucus vesiculosus and Delesseria sanguinea, two macroalgae from the Kiel Fjord were investigated seasonally over two years by cultivation-based methods. A total of 166 bacterial strains were isolated from the macroalgae, affiliated to seven classes of bacteria (Actinobacteria, Bacilli, Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Cytophagia and Flavobacteria). According to 16S rRNA gene sequence similarities they were arranged in 82 phylotypes of〉99.0% sequence identity. Assuming that chemical factors rule the bacteriamacroalga and bacteriabacteria interactions on algal surfaces, we tested the antibiotic activity of the bacterial isolates not only against a panel of four standard test organisms (Bacillus subtilis, Candida glabrata, Escherichia coli and Staphylococcus lentus) but also four macroalga-associated microorganisms: Algicola bacteriolytica and Pseudoalteromonas elyakovii (macroalgal pathogens), and Bacillus algicola and Formosa algae (strains associated with algal surfaces). Organic extracts of more than 51% of the isolates from the two macroalgae inhibited the growth of at least one of the tested microorganisms. As much as 46% and 45% of the isolates derived from F. vesiculosus and D. sanguinea, respectively, showed antimicrobial activity against the set of macroalga-associated bacteria, compared with 13 and 19% against a standard set of microorganisms. High antibacterial activity against macroalgal pathogens and bacterial competitors support the assumption that complex chemical interactions shape the relationships of bacteria associated with macroalgae and suggest that these bacteria are a rich source of antimicrobial metabolites.

Description: Two brachyurans of the varunid genus Hemigrapsus from the northwestern Pacific Ocean have invaded coastal regions of the north Atlantic – Hemigrapsus takanoi (sibling species of Hemigrapsus penicillatus) and Hemigrapsus sanguineus in Europe and the latter in the USA. Parasites are known from these crabs in their native habitats, but except for an undescribed larval nematode, none has been found in those examined from their new locations. These parasites include metacercariae of eight species of microphallid trematode, the rhizocephalan barnacles Polyascus polygenea, Sacculina nigra and Sacculina senta, and the obligate gut-inhabiting mesomycetozoan Enteromyces callianassae (potential parasite). The following have been identified in four of the other eight Pacific crabs within the genus (Hemigrapsus nudus and Hemigrapsus oregonensis, northern hemisphere; Hemigrapsus crenulatus and Hemigrapsus sexdentatus, southern hemisphere), none of which have been geographically displaced: metacercariae of two microphallid trematodes; cystacanths of three acanthocephalans Profilicollis antarcticus, Profilicollis botulus and Profilicollis novaezelandensis; larval nematode Ascarophis sp.; nematomorph Nectonema zealandica; entoniscid isopod Portunion conformis; mesomycetozoan Taeniella carcini; and nemertean egg predator Carcinonemertes epialti. The likelihood of the displaced species of shore crabs being rejoined with their native parasites or their susceptibility to becoming infected by similar parasites in their new locations is discussed. In future global displacements of parasitized Hemigrapsus species it is possible that their most serious parasites, rhizocephalans and entoniscid isopods, may infect previously uninfected species. For example, the two eastern Pacific species of Hemigrapsus (H. nudus and H. oregonensis) may be vulnerable to the rhizocephalans and may in turn be a source of entoniscids transported elsewhere.

Description: In this study the antifouling activity was investigated of a series of chemically related, halogenated furanones isolated from Delisea pulchra (Greville) Montagne, a red alga which is rarely fouled in the field. The metabolites were tested in laboratory assays against representatives of the three major groups of fouling organisms, the barnacle Baianus amphitrite amphitirite Darwin, the macroalga Ulva lactuca Linnaeus and a marine bacterium (strain SW 8). Settlement of barnacle cyprid larvae was strongly inhibited, with an EC50 of 〈 25 ng·mr1 (25 ppb) for some compounds. The settlement and growth of algal gametes was also strongly inhibited, in some cases at concentrations as low as 25 ng·cm-2 • Growth of the marine bacterium SW8 was inhibited more strongly than by the common antibiotic gentamicin. Overall, activity of the D. pulchra metabolites was comparable to that of the heavy metals and biocides currently used in antifouling paints. However, no single compound was most active in all tests and some metabolites effective against one organism showed Iittle or no activity a·gainst the others. The high but variable level of activity of the D. pulchra metabolites, coupled with their small size, relative stability, and ability tobe synthesized suggest their potential use as active ingredients in antifouling coatings.

Description: The incidence angles of the SSM/I radiometers on the DMSP satellites vary from satellite to satellite and exhibit variations of up to 1.5° during one orbit. The effects of these variations on the measured brightness temperatures are investigated on the basis of simulated and measured data for oceanic arm. A deviation of 1° from the nominal incidence angle of 53.0° causes brightness temperature changes of up to 2 K depending on surface and atmospheric conditions. Errors of retrieved geophysical parameters on the order of 5%–10% result when the incidence angle variation is not taken into account. This is a common property of most published statistical algorithms. For total precipitable water and cloud liquid water content the error increases with increasing parameter value. For wind speed the error is largest for low wind speed and decreases with increasing wind speed. Due to the slowly varying latitudinal dependence of the incidence angle, these errors do not cancel out when monthly means are computed. A correction method is developed on the basis of simulated data and tested successfully with measured data. Observed brightness temperature differences between DMSP F10 and F11 are reduced when using corrected data. If diurnal variations of geophysical parameters are investigated, the incidence angle correction is mandatory to obtain useful results, especially for DMSP F10.

Description: Beaks of 133 specimens of Todarodes sagittatus caught in the central East Atlantic were studied. Relationships between several measurements of the upper and lower beaks and dorsal mantle length (DML) and total mass were calculated. The darkening process or pigmentation of both beaks was investigated and a qualitative scale of eight degrees of pigmentation developed. Except for the hood of the lower beak, the growth of both beaks was allometrically negative in relation to DML in males, whereas the growth of several parts of both beaks of females was allometrically positive. The hood grew faster than all other parts of the male beak and faster than all parts of the lower beak of females. Regression coefficients calculated for the growth of the beaks revealed differences between the growth patterns of females and males (p 〈 0.05). The results relating to darkening and the maturing process suggest that they are related and that they take place over a very short period in the life of the squid.

Description: In the autumn of 1996 the field component of an experiment designed to observe water mass transformation began in the Labrador Sea. Intense observations of ocean convection were taken in the following two winters. The purpose of the experiment was, by a combination of meteorological and oceanographic field observations, laboratory studies, theory, and modeling, to improve understanding of the convective process in the ocean and its representation in models. The dataset that has been gathered far exceeds previous efforts to observe the convective process anywhere in the ocean, both in its scope and range of techniques deployed. Combined with a comprehensive set of meteorological and air-sea flux measurements, it is giving unprecedented insights into the dynamics and thermodynamics of a closely coupled, semienclosed system known to have direct influence on the processes that control global climate.

Description: A dynamic–thermodynamic sea ice–mixed layer model for the Weddell Sea is complemented by a simple, diagnostic model to account for local sea ice–atmosphere interaction. To consider the atmospheric influence on the oceanic mixed layer, the pycnocline upwelling velocity is calculated using the theory of Ekman pumping. In several experiments, formation and conservation of a polynya in the Weddell Sea are investigated. Intrusion of heat into the lower atmosphere above the polynya area is assumed to cause a thermal perturbation and a cyclonic thermal wind field. Superposed with daily ECMWF surface winds, this modified atmospheric forcing field intensifies oceanic upwelling and induces divergent ice drift. Simulation results indicate that in case of a weak atmospheric cross-polynya flow the formation of a thermal wind field can significantly extend the lifetime of a large polynya. The repeated occurrence of the Weddell polynya in the years 1974–76 thus appears to be an effect of feedback mechanisms between sea ice, atmosphere, and oceanic mixed layer.

Description: Different processes have been proposed to explain the large-scale spreading of Mediterranean Water (MW) in the North Atlantic, however, no systematic study comparing the efficiency of different processes is yet available. Here, the authors present a series of experiments in a unified framework that is designed to quantify the effects of several physical processes on the spreading of MW in an idealized model of the North Atlantic. The common technique of restoring temperature and salinity to an observed distribution near the Mediterranean inflow fails to produce an adequate amount of MW because the eastern boundary region near the MW inflow is rather quiescent in models. Diapycnal processes like double diffusion and cabbeling turn out too inefficient to alone account for the large-scale MW anomaly. However, with a preexisting anomaly, double diffusion leads to a considerable northward and zonal redistribution of MW. The density anomaly induced by cabbeling curtails the zonal spreading of MW while it increases the northward spreading. With isopycnal mixing and the weak mean flow that prevails in the outflow region, a spatial distribution of the MW anomaly is obtained that is inconsistent with observations. Unrealistically high diffusion coefficients would be necessary to reproduce the observed salt flux into the Atlantic. The most effective process in the experiments is the volume flux associated with the Atlantic–Mediterranean exchange. The current system that is established in response to the inflow of MW into the Atlantic carries the anomaly almost 30° of longitude into the basin and along the eastern margin up to the northeastern corner of the domain and farther along the northern boundary.

Description: Parameterization of turbulent wind stress and sensible and latent heat fluxes is reviewed in the context of climate studies and model calculations, and specific formulas based on local measurements are recommended. Wind speed is of key importance, and in applying experimental results, the differences between local and modeled winds must be considered in terms of their method of observation or calculation. Climatological wind data based on Beaufort wind force reports require correction for historical trends. Integrated long-term net turbulent and radiative heat fluxes at the sea surface, calculated from archived data, are consistent with meridional heat transport through oceanographic sections; this lends support to the methods used

Description: The roles of ice particle size distributions (SDs) and particle shapes in cirrus cloud solar radiative transfer are investigated by analyzing SDs obtained from optical array probe measurements (particle sizes larger than 20–40 μm) during intensive field observations of the International Cirrus Experiment, the European Cloud and Radiation Experiment, the First ISCCP Regional Experiment, and the Central Equatorial Pacific Experiment. It is found that the cloud volume extinction coefficient is more strongly correlated with the total number density than with the effective particle size. Distribution-averaged mean single scattering properties are calculated for hexagonal columns, hexagonal plates, and polycrystals at a nonabsorbing (0.5 μm), moderately absorbing (1.6 μm), and strongly absorbing (3.0 μm) wavelength. At 0.5 μm (1.6 μm) (3.0 μm), the spread in the resulting mean asymmetry parameters due to different SDs is smaller than (comparable to) (smaller than) the difference caused by applying different particle shapes to these distributions. From a broadband solar radiative transfer point of view it appears more important to use the correct particle shapes than to average over the correct size distributions.

Description: The free surface version of the GFDL model is used to study inflow and outflow through the Danish Straits, which connect the Baltic with the North Sea. Three problems are addressed: (i) the piling up of inflowing water in the Arkona basin; (ii) the transport ratios between Belt and Sound; (iii) the dominance of hydraulic or geostrophic control. Model results show that a cyclonic eddy (dome) is formed by the inflowing saline water that prevents this water from passing rapidly into the Bornholm basin. This eddy is enforced with increasing inflow due to a sea level difference between Kattegat and western Baltic. If density gradients along the straits are weak and the flow is dominantly driven by sea level differences between Kattegat and Baltic, the well-known ratio of 70% : 30% for the transports through Belt and Sound are confirmed. Strong density gradients can change this ratio considerably, especially in the outflow case, when the light water of the Baltic flows against the heavier water of the Kattegat. Under variable wind conditions, no fixed ratio is found. The flow in the Straits is geostrophically controlled; however, the strong baroclinic density field does not allow us to derive the transport simply from sea level inclination.

Description: A new optical disdrometer has been developed that is optimized for use in high wind speeds, for example, on board ships. The minimal detectable size of droplets is 0.35 mm. Each drop is measured separately with regard to its size and residence time within the sensitive volume. From the available information, the drop size distribution can be calculated with a resolution of 0.05 mm in diameter either by evaluation of the residence time of drops or by drop counting knowing the local wind. Experience shows that using the residence time leads to better results. Rain rates can be determined from the droplet spectra by assuming terminal fall velocity of the drops according to their size. Numerical modeling of disdrometer measurements has been performed, allowing the study of the effect of multiple occupancy of the sensitive volume and grazing incidences on disdrometer measurements. Based on these studies an iterative procedure has been developed to eliminate the impact of these effects on the calculated drop size distributions. This technique may also be applied to any other kind of disdrometer. Long-term simultaneous measurements of the disdrometer and a conventional rain gauge have been used to validate this procedure.

Description: To study the variability of the thermohaline circulation in the North Atlantic on decadal time scales, the atmospheric regional model REMO is currently investigated as a component of a fully-coupled atmosphere–ice–ocean model for the Arctic/North Atlantic. A comparison of a 5-year uncoupled simulation of the regional model with a 5-year NCEP/NCAR reanalysis period is carried out in order to assess the performance of the regional model in polar and subpolar regions. The model simulates basic structures realistically. It performs well in middle latitudes but shows some problems in the region of the marginal ice zone and in continental regions with extreme temperature amplitudes. The high elevations of Greenland in the central part of the model domain give rise to problems in the model dynamics, resulting in moderate deviations from NCEP/NCAR reanalysis.

Description: The compatibility of the Gent and McWilliams thickness mixing parameterization with perturbation thickness fluxes evaluated from eddy-resolving North Atlantic model results is investigated. After extensive spatial and temporal averaging, a linear correlation between the parameterized fluxes and those calculated directly from model fluctuations in the subtropics could be found. A direct estimate of a constant mixing parameter κ could be inferred in the order of 1.0 × 107 cm2 s−1.

Description: A simple point-vortex “heton” model is used to study localized ocean convection. In particular, the statistically steady state that is established when lateral buoyancy transfer, effected by baroclinic instability, offsets the localized surface buoyancy loss is investigated. Properties of the steady state, such as the statistically steady density anomaly of the convection region, are predicted using the hypothesis of a balance between baroclinic eddy transfer and the localized surface buoyancy loss. These predictions compare favorably with the values obtained through numerical integration of the heton model. The steady state of the heron model can be related to that in other convection scenarios considered in several recent studies by means of a generalized description of the localized convection. This leads to predictions of the equilibrium density anomalies in these scenarios, which concur with those obtained by other authors. Advantages of the heton model include its inviscid nature, emphasizing the independence of the fluxes affected by the baroclinic eddies from molecular processes, and its extreme economy, allowing a very large parameter space to be covered. This economy allows us to examine more complicated forcing scenarios: for example, forcing regions of varying shape. By increasing the ellipticity of the forcing region, the instability is modified by the shape and, as a result, no increase in lateral fluxes occurs despite the increased perimeter length. The parameterization of convective mixing by a redistribution of potential vorticity, implicit in the heton model, is corroborated; the heton model equilibrium state has analogous quantitative scaling behavior to that in models or laboratory experiments that resolve the vertical motions. The simplified dynamics of the heton model therefore allows the adiabatic advection resulting from baroclinic instability to be examined in isolation from vertical mixing and diffusive processes. These results demonstrate the importance of baroclinic instability in controlling the properties of a water mass generated by localized ocean convection. A complete parameterization of this process must therefore account for the fluxes induced by horizontal variations in surface buoyancy loss and affected by baroclinic instability.

Description: On the basis of the collection of individual marine observations available from the Comprehensive Ocean–Atmosphere Data Set, major parameters of the sea state were evaluated. Climatological fields of wind waves and swell height and period, as well as significant wave height and resultant period are obtained for the North Atlantic Ocean for the period from 1964 to 1993. Validation of the results against instrumental records from National Data Buoy Center buoys and ocean weather station measurements indicate relatively good agreement for wave height and systematic biases in the visually estimated periods that were corrected. Wave age, which is important for wind stress estimates, was evaluated form wave and wind observations. The climatology of wave age indicates younger waves in winter in the North Atlantic midlatitudes and Tropics. Wave age estimates were applied to the calculations of the wind stress using parameterizations from field experiments. Differences between wave-age-based and traditional estimates are not negligible in wintertime in midlatitudes and Tropics where wave-induced stress contributes from 5% to 15% to the total stress estimates. Importance of the obtained effects for ocean circulation and climate variability is discussed.

Description: A number of studies are providing increasing genomic and transcriptomic information on the molecular components of transport, and biochemical control in the cell biology of calcification in coccolithophores. In this review we summarise recent evidence for molecular components involved in the trans-cellular transport of Ca2+, inorganic carbon and H+ between the external medium and the intracellular calcification compartment. We present new hypotheses for the transport of substrates to the site of calcification and for the removal of products, highlighting key gaps in our current knowledge. We also discuss how a cellular and molecular approach will improve abilities to understand and predict responses and adaptation to changing ocean chemistry of this important group of microorganisms.

Description: The study presents results on the composition and vertical distribution of the near-bottom plankton community at an abyssal site in the NE Atlantic. Plankton samples were collected at 1, 15, 50 and 100 m above bottom (mab). Whereas the composition within the upper three layers was very similar, a major shift occurred in the immediate vicinity of the seafloor. Between 100 and 15 mab, the plankton was dominated by Copepoda, making up more than 75% of the total abundance and biomass (without gelatinous organisms). At 1 mab, Copepoda were still abundant, but their share decreased to ca. 50%, while Polychaeta, Malacostraca and Chaetognatha became important groups. Within the Copepoda, the predominance of the genus Metridia (Calanoida) in the upper layers was replaced by the genus Benthomisophria (Misophrioida) at 1 mab. Despite enrichment in organic particles towards the bottom, the total abundance and biomass of plankton did not show marked differences between the four layers investigated. Several hypotheses are discussed which may explain why the presumably higher food concentrations near the deep-sea floor do not lead to increased standing stocks of the plankton community.

Description: Analysis of modern and historical observations demonstrates that the temperature of the intermediate-depth (150–900 m) Atlantic water (AW) of the Arctic Ocean has increased in recent decades. The AW warming has been uneven in time; a local 1°C maximum was observed in the mid-1990s, followed by an intervening minimum and an additional warming that culminated in 2007 with temperatures higher than in the 1990s by 0.24°C. Relative to climatology from all data prior to 1999, the most extreme 2007 temperature anomalies of up to 1°C and higher were observed in the Eurasian and Makarov Basins. The AW warming was associated with a substantial (up to 75–90 m) shoaling of the upper AW boundary in the central Arctic Ocean and weakening of the Eurasian Basin upper-ocean stratification. Taken together, these observations suggest that the changes in the Eurasian Basin facilitated greater upward transfer of AW heat to the ocean surface layer. Available limited observations and results from a 1D ocean column model support this surmised upward spread of AW heat through the Eurasian Basin halocline. Experiments with a 3D coupled ice–ocean model in turn suggest a loss of 28–35 cm of ice thickness after 50 yr in response to the 0.5 W m−2 increase in AW ocean heat flux suggested by the 1D model. This amount of thinning is comparable to the 29 cm of ice thickness loss due to local atmospheric thermodynamic forcing estimated from observations of fast-ice thickness decline. The implication is that AW warming helped precondition the polar ice cap for the extreme ice loss observed in recent years.

Description: A comparative study about the removability of four potentially harmful ozone-produced oxidants (free bromine, bromamines, free chlorine and chloramines) by activated carbon filtration was performed under identical conditions in small-scale filter experiments. Removability was high and similar among the oxidants with the exception of chloramines which showed the least removability. Results proved activated carbon filtration to be very efficient in removing the dominating brominated oxides formed during the ozonation of natural and most artificial seawaters. In contrast, removability of chloramines, sometimes present in ozonated bromide-free artificial saltwater, was shown to be significantly lower. To improve removal of persistent chloramines by activated carbon filtration, a comparative evaluation of 3 different activated carbon types was conducted. Granulated activated carbon on coal basis was suggested to be the most cost-effective carbon for removing chloramines as it possessed highest removal capacity, while being the cheapest of the carbons tested.

Description: The importance of decadal climate variability (DCV) research is being increasingly recognized, including by the World Climate Research Program (WCRP) and the Intergovernmental Panel on Climate Change (IPCC). An improved understanding of DCV is very important because stakeholders and policymakers want to know the likely climate trajectory for the coming decades for applications to water resources, agriculture, energy, and infrastructure development. Responding to this demand, many climate modeling groups in the United States, Europe, Japan, and elsewhere are gearing up to assess the potential for decadal climate predictions. The magnitudes of regional DCV often exceed those associated with the trends resulting from anthropogenic changes. Therefore, differentiating between the two is also very important for planning, implementation, and national and international treaties.

Description: In the Gulf of Lions, observations of deep convection have been sporadically carried out over the past three decades, showing significant interannual variability of convection activity. As long time series of meteorological observations of the region are available from coastal stations, heat flux time series for the Gulf of Lions for the individual winters from 1969 to 1994 are derived by calibrating these observations against direct measurements obtained over the convection site. These heat fluxes are also compared against heat fluxes obtained by the French PERIDOT weather model for the winter of 1991/92. A Kraus–Turner one-dimensional mixed layer model is initialized by climatological mean temperature and salinity profiles and then driven by the heat flux time series of the individual years. Resulting convection depths are in satisfactory agreement with existing observational evidence, showing the dominance of interannual variability of local forcing on convection variability. The interannual variability of convection depth causes interannual variations in deep-water properties, and these are also compared with the hydrographic database.

Description: Previous attempts to derive the depth-dependent expression of the radiation stress have lead to a debate concerning (i) the applicability of Mellor’s approach to a sloping bottom, (ii) the introduction of the delta function at the mean sea surface in the later papers by Mellor, and (iii) a wave-induced pressure term derived in several recent studies. The authors use an equation system in vertically Lagrangian and horizontally Eulerian (VL) coordinates suitable for a concise treatment of the surface boundary, and obtain an expression for the depth-dependent radiation stress that is consistent with the vertically-integrated expression given by Longuet-Higgins and Stewart. Concerning (i)-(iii) in the above, the difficulty of handling a sloping bottom disappears when wave-averaged momentum equations in the VL coordinates are written for the development of (not the Lagrangian mean velocity but) the Eulerian mean velocity. There is also no delta function at the sea surface in the expression for the depth-dependent radiation stress. The connection between the wave-induced pressure term in the recent studies and the depth-dependent radiation stress term is easily shown by rewriting the pressure-based form stress term in the thickness-weighted-mean (TWM) momentum equations as a velocity-based term which contains the time derivative of the pseudomomentum in the TWM framework.

Description: The upper ocean, including the biologically productive euphotic zone and the mixed layer, has great relevance for studies of physical, biogeochemical, and ecosystem processes and their interaction. Observing this layer with a continuous presence, sampling many of the relevant variables, and with sufficient vertical resolution, has remained a challenge. Here a system is presented which can be deployed on the top of deep-ocean moorings, with a drive mechanism at depths of 150-200m, which mechanically winches a large sensor float and smaller communications float tethered above it to the surface and back down again, typically twice per day for periods up to 1 year. The sensor float can carry several sizeable sensors, and it has enough buoyancy to reach the near surface and for the communications float to pierce the surface even in the presence of strong currents. The system can survive mooring blow-over to 1000m depth. The battery-powered design is made possible by using a balanced energy-conserving principle. Reliability is enhanced with a drive assembly that employs a single rotating part that has no slip rings or rotating seals. The profiling bodies can break the surface to sample the near-surface layer and to establish satellite communication for data relay or reception of new commands. An inductive pass-through mode allows communication with other mooring components throughout the water column beneath the system. A number of successful demonstration deployments have been completed.