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  • Elsevier  (43)
  • Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.  (15)
  • National Academy of Sciences  (13)
  • Public Library of Science (PLoS)
  • 2020-2023  (69)
  • 2010-2014  (2)
  • 2020  (71)
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  • 1
    Publication Date: 2022-05-25
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jacox, M. G., Alexander, M. A., Siedlecki, S., Chen, K., Kwon, Y., Brodie, S., Ortiz, I., Tommasi, D., Widlansky, M. J., Barrie, D., Capotondi, A., Cheng, W., Di Lorenzo, E., Edwards, C., Fiechter, J., Fratantoni, P., Hazen, E. L., Hermann, A. J., Kumar, A., Miller, A. J., Pirhalla, D., Buil, M. P., Ray, S., Sheridan, S. C., Subramanian, A., Thompson, P., Thorne, L., Annamalai, H., Aydin, K., Bograd, S. J., Griffis, R. B., Kearney, K., Kim, H., Mariotti, A., Merrifield, M., & Rykaczewski, R. Seasonal-to-interannual prediction of North American coastal marine ecosystems: forecast methods, mechanisms of predictability, and priority developments. Progress in Oceanography, 183, (2020): 102307, doi:10.1016/j.pocean.2020.102307.
    Description: Marine ecosystem forecasting is an area of active research and rapid development. Promise has been shown for skillful prediction of physical, biogeochemical, and ecological variables on a range of timescales, suggesting potential for forecasts to aid in the management of living marine resources and coastal communities. However, the mechanisms underlying forecast skill in marine ecosystems are often poorly understood, and many forecasts, especially for biological variables, rely on empirical statistical relationships developed from historical observations. Here, we review statistical and dynamical marine ecosystem forecasting methods and highlight examples of their application along U.S. coastlines for seasonal-to-interannual (1–24 month) prediction of properties ranging from coastal sea level to marine top predator distributions. We then describe known mechanisms governing marine ecosystem predictability and how they have been used in forecasts to date. These mechanisms include physical atmospheric and oceanic processes, biogeochemical and ecological responses to physical forcing, and intrinsic characteristics of species themselves. In reviewing the state of the knowledge on forecasting techniques and mechanisms underlying marine ecosystem predictability, we aim to facilitate forecast development and uptake by (i) identifying methods and processes that can be exploited for development of skillful regional forecasts, (ii) informing priorities for forecast development and verification, and (iii) improving understanding of conditional forecast skill (i.e., a priori knowledge of whether a forecast is likely to be skillful). While we focus primarily on coastal marine ecosystems surrounding North America (and the U.S. in particular), we detail forecast methods, physical and biological mechanisms, and priority developments that are globally relevant.
    Description: This study was supported by the NOAA Climate Program Office’s Modeling, Analysis, Predictions, and Projections (MAPP) program through grants NA17OAR4310108, NA17OAR4310112, NA17OAR4310111, NA17OAR4310110, NA17OAR4310109, NA17OAR4310104, NA17OAR4310106, and NA17OAR4310113. This paper is a product of the NOAA/MAPP Marine Prediction Task Force.
    Keywords: Prediction ; Predictability ; Forecast ; Ecological forecast ; Mechanism ; Seasonal ; Interannual ; Large marine ecosystem
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2022-02-16
    Description: On September 6, 2017, the solar active region AR 2673 emitted two solar flares: the first at 08:57 UT (X2.2) and the second at 11:53 UT (X9.3); both were powerful enough to black-out high and low frequency radio waves (where UT is universal time). The X9.3 was the strongest solar flare event in the past decade. In this study, we took the advantage of these two extreme flare events to investigate corresponding effects on the ionosphere using multi-instrument observations from magnetometers, Global Positioning System – Total Electron content (GPS-TEC) receivers, ionosondes and Swarm satellites over a large geographical extent covering South American, African and European sectors. During the X2.2 flare, European and African sectors were sunlit and during X9.3 European, African, and South American sectors were sunlit and exposed to the solar flare radiation. During the X2.2 flare, there was an ionosonde blackout for a duration of about 45 min, while during the X9.3 flare this blackout lasted for 1 h and 30 min. The blackout are seen over a large global extent which demonstrates the severity of solar flare events in disrupting the radio communication. The horizontal component of Earth’s geomagnetic field has shown ripples and enhancements during these flare events. The ionospheric Vertical Total Electron Content (VTEC) showed a positive phase along with an intensification of the Equatorial Ionization Anomaly (EIA) over the South American and African sectors. The dynamical and physical processes associated with the TEC and EIA variabilities due to solar flare are discussed.
    Description: Published
    Description: 1775-1791
    Description: 1A. Geomagnetismo e Paleomagnetismo
    Description: 2A. Fisica dell'alta atmosfera
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 3
    Publication Date: 2022-01-07
    Description: Palaeoenvironmental reconstructions with temporal coverages extending beyond Marine Isotope Stage (MIS) three are scarce within the data sparse region of Chukotka, Far East Russia. The objective of this paper is to infer palaeoenvironmental variability from a 10.76 m long, OSL- and 14C- dated sediment core from Lake Ilirney, Chukotka (67°21′N, 168°19′E). We analysed high-resolution sediment-geochemistry (XRF), sedimentology (TC, TN, TOC, grain-size), mineralogy (XRD) and preliminary micropalaeontological data (diatoms and pollen) from the core as well as acoustic sub-bottom profiling data from the lake basin. Our results affirm the application of XRF-based sediment-geochemical proxies as effective tracers of palaeoenvironmental variability within arctic lake systems. Our study reveals that a lake formed during MIS3 from 51.8 (±4.1) ka BP, following extensive MIS4 glaciation. Catchment palaeoenvironmental conditions during this time remained harsh associated with the continued presence of a catchment glacier until 36.2 (±2.6) ka BP. Partial amelioration reflected by increased diatom, catchment vegetation and lake organic productivity and clastic sediment input from mixed sources from 36.2 (±2.6) ka BP resulted in a lake high-stand ∼15 m above present and is interpreted as evidence of a more productive palaeoenvironment coincident with the MIS3 interstadial optimum. A transitional period of deteriorating palaeoenvironmental conditions occurred ∼30–27.9 ka BP and was superseded by periglacial-glacial conditions from 27.9 (±0.8) ka BP, during the last glacial maximum. Deglaciation as marked by sediment-geochemical proxies commenced at 20.2 (±0.8) ka BP. Our findings are compared with lacustrine, Yedoma and river-bluff records from across Beringia and potentially yield limited support for a marked Younger Dryas cooling in the study area.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 4
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-07
    Description: Freshwater ecosystems are changing their natural conditions, influenced and accelerated by human activities. These processes are capable of changing the hydrological regime and the composition of the communities, letting the future of aquatic biodiversity unknown. The construction of dams has been one of the main factors responsible for environmental changes, such as nutrients depletion, increased water transparency and loss of biodiversity in freshwater ecosystems. The aim of our study was to analyze the functional and taxonomic dissimilarity of the zooplankton community and its drivers in response to the effect of the hydrological cycle (drought and rainy), in two highly distinct floodplains, the Upper Paraná River (river with a cascade of dams) and the Amazon. A total of 72 samples were collected (16 AMA dry and 16 on rainy and 20 PAR dry and 20 on rainy) from zooplankton communities as the response variable, phytoplankton as a predictor of food, fish as a predictor of potential predators and limnological variables. Were calculated β-Total diversity and partitioned in the components β-Repl and β-Rich (taxonomic and functional approach). We expect that environmental heterogeneity is going to drive higher values of beta diversity. In sequence, distance-based redundancy analysis (db-RDA) was calculated using the distance matrices generated in the functional and taxonomic beta to assess which are the determinants of zooplankton beta diversity. Thus, we hypothesized that biotic interactions will have stronger relationships with zooplankton dissimilarity during the drought and, limnological variables and spatial component will be more important during rainy season. Greater environmental heterogeneity was found in the Amazon floodplain and also in the dry season. The beta functional and taxonomic diversity of zooplankton showed a similar relationship between the floodplains and between the hydrological periods, represented by the β-Repl component, except for the drought season in the Upper Paraná River, where the functional diversity showed the lowest values, undetected by the taxonomic approach. The factors that influenced the zooplankton beta functional and taxonomic diversity in the two floodplains were different depending on the hydrological period, reflecting once again the difference in environmental heterogeneity and the strength of hydrodynamics within each plain. The analysis of the species and functional traits distribution and, which are the variables structuring this distribution is extremely important to analyze ecosystem processes and services, especially in impacted environments such as the Upper Paraná River floodplain, and a floodplain so biodiverse as the Amazon, and even so, with the prediction of the construction of numerous dams in its hydrographic basin. We reinforce the importance of periodic flooding in these floodplains, for the maintenance of biodiversity and ecosystem services over time, and in this way, prevent biotic homogenization, and consequently, conserve these aquatic ecosystems.
    Description: Os ecossistemas de água doce estão passando por frequentes alterações nas suas condições naturais, influenciadas e aceleradas por atividades humanas. Esses processos são capazes de alterar o regime hidrológico e a composição das comunidades, deixando cada vez mais incerto o futuro da biodiversidade aquática. A construção de barramentos tem sido um dos principais responsáveis por modificações ambientais, como a redução de nutrientes, o aumento da transparência da água e a perda de biodiversidade em ecossistemas dulcícolas. O objetivo deste estudo foi analisar a dissimilaridade funcional e taxonômica da comunidade zooplanctônica e seus determinantes em resposta ao efeito do ciclo hidrológico (seca e chuva) em duas planícies de inundação altamente distintas, a planície do alto rio Paraná (rio com cascata de barramentos) e planície Amazônica. Foram coletadas 72 amostras (16 na seca e 16 na cheia na planície Amazônica e 20 na seca e 20 na cheia na palnície do alto rio Paraná) das comunidades de zooplâncton como variável resposta, de fitoplâncton como variável preditora de alimentação, de peixes como preditor de potenciais predadores e as variáveis limnológicas. Foram calculadas a diversidade β-Total e particionada nos componentes β-Repl e β-Rich em uma abordagem taxonômica e funcional, e espera-se que a heterogeneidade ambiental conduza a maiores valores de diversidade beta. Na sequência, foi calculada através das matrizes de distância geradas na beta funcional e taxonômica a análise de redundância baseada em distância (db-RDA) para avaliar quais os determinantes da diversidade beta. Assim, foi hipotetizado que as interações bióticas apresentarão relações mais fortes com a dissimilaridade zooplanctônica na seca e as variáveis limnológicas e o espaço na cheia. Foi encontrada uma maior heterogeneidade ambiental na planície Amazônica e também no período de seca. A diversidade beta funcional e taxonômica do zooplâncton apresentou uma relação semelhante entre as planícies e entre os períodoshidrológicos, representados pelo componente β-Repl, exceto pelo período de seca na planície do alto rio Paraná onde a diversidade funcional apresentou os menores valores, não detectado pela abordagem taxonômica. Os fatores que influenciaram a diversidade beta funcional e taxonômica zooplanctônica nas duas planícies de inundação foram bem distintos dependendo do período hidrológico, refletindo mais uma vez a diferença na heterogeneidade ambiental e na força da hidrodinâmica dentro de cada planície. A análise da distribuição das espécies e dos traços funcionais, e de quais variáveis estruturam essa distribuição é de extrema importância para analisar os processos e serviços ecossistêmicos, especialmente em ambientes impactados como a planície de inundação do alto rio Paraná, e uma planície tão biodiversa como a Amazônica e, mesmo assim, com previsão de construção de inúmeros barramentos em sua bacia hidrográfica. Reforça-se a importância da inundação periódica nessas planícies, para a manutenção da biodiversidade e dos serviços ecossistêmicos ao longo do tempo e, desta forma, prevenir a homogeneização biótica, e consequentemente, a conservação dos ecossistemas aquáticos.
    Description: PhD
    Keywords: Zooplâncton de água doce ; Comunidades, Ecologia de ; Diversidades beta taxonômica e funcional ; Planícies de inundação ; Floodplain ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::Y::Zooplankton ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::S::Species diversity
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 56pp.
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  • 5
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-05
    Description: Although several studies have dealt with the description of morphological characters in Cichlidae, usually aiming for phylogenetic inference, little attention has been given to their musculature. The complete striated musculature of a cichlid species, Geophagus sveni Lucinda, Lucena & Assis, was described for the first time, with illustrations of all muscles and a protocol for the dissection of specimens. The striated musculature of at least of species of each genus in tribe Geophagini, among other cichlids, was compared, and 98 characters were described with the purpose of analysing their relation with the group’s phylogeny. This character matrix was employed to produce two unconstrained phylogenetic analyses, one weighted and the other unweighted. The myological characters were mapped upon a pre-existing phylogenetic hypothesis, for understanding the correlation among the characters and trophic specialisations of each taxon. The conclusion is that Geophagini specialised in sifting substrate (winnowers) tend to present a few convergent adaptations, manifested in the shape and degree of development of muscles such as adductor mandibulae, levator arcus palatini, dilatator operculi, adductor branchialis 1 and obliqui ventrales 1–2. This study facilitates future investigations on the functions of the striated muscles in fishes and their role in the processes of adaptive radiation, i.e., functional diversification.
    Description: Apesar de diversos estudos terem tratado da descrição de caracteres morfológicos em Cichlidae, geralmente para fins de inferência filogenética, muito pouco se estudou sobre sua musculatura. Descreveu-se, pela primeira vez, a musculatura estriada completa de uma espécie de ciclídeo, Geophagus sveni Lucinda, Lucena & Assis, com ilustrações de todos os músculos e um protocolo para a dissecção de exemplares. Comparou-se a musculatura esquelética de pelo menos uma espécie de cada gênero da tribo Geophagini, dentre outros ciclídeos, e descreveram-se 98 caracteres com o propósito de analisar sua relação com a filogenia do grupo. Essa matriz de caracteres foi empregada para produzir duas análises filogenéticas sem restrição, uma com pesagem e outra sem pesagem. Mapearam-se os caracteres miológicos sobre uma hipótese filogenética pré-existente, para a compreensão da correlação entre os caracteres e as especializações tróficas de cada táxon. Conclui-se que os Geophagini especializados em peneirar o substrato (winnowers) tendem a apresentar algumas adaptações convergentes, manifestadas na forma e no grau de desenvolvimento de músculos como adductor mandibulae, levator arcus palatini, dilatator operculi, adductor branchialis 1 e obliqui ventrales 1–2. Este estudo possibilita futuras investigações acerca das funções dos músculos estriados em peixes e seu papel nos processos de irradiação adaptativa, i.e., diversificação funcional.
    Description: PhD
    Keywords: Geophagini (Acanthopterygii, Cichlidae) “cará” ; Peixes de água doce ; Filogenia ; Morfologia ; Musculatura esquelética ; ASFA_2015::F::Freshwater fish ; ASFA_2015::T::Taxonomy ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::M::Morphology (organisms) ; ASFA_2015::P::Phylogeny ; ASFA_2015::M::Musculoskeletal system
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 234pp.
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  • 6
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-06-28
    Description: In Neotropical rivers the predation by fish and the structuring of the habitat by macrophytes influence the dynamics of the zooplankton community, altering the richness and composition of species and the richness and functional composition of the zooplankton and thus the functioning of the ecosystem. We analyzed the influence of macrophytes bank structure and predation by forage fish species on taxonomic and functional zooplankton diversity, estimated by different diversity indices (taxonomic and functional richness, taxonomic beta diversity and functional beta diversity). Thus, we assume that different levels of macrophytes structure and fish predation will alter the taxonomic and functional composition of the zooplankton (alpha and beta) between the analyzed points. Beta diversity was split into two distinct components, turnover and nesting. The zooplankton species richness was positively associated with the macrophytes richness and the macrophytes diversity. In turn, the functional richness of zooplankton had a positive association with fish richness and macrophytes richness. For the variation of total taxonomic beta diversity of zooplankton, the Generalized Dissimilarity Modeling (GDM) explained 32.58% of the total among the predictor variables. The macrophytes biomass represented the taxonomic turnover. The variation in total functional beta diversity of the zooplankton explained 9.98% by the GDM model. The abundance of fish represented the functional nesting. Macrophytes structure represented the taxonomic components and predation represented the functional components. The limnological heterogeneity of the coastal region of the Bay River made possible the colonization by multispecies macrophytes banks, influencing the alteration of the fish and zooplankton community and the more heterogeneous the environmental conditions, the greater is the capacity of colonization of different species, which can present different functional traits. The results indicate the importance of maintaining heterogeneous locations, the need to preserve the tributaries in river floodplain systems as they serve as nursery for fish spawning and contribute to a greater richness of fish, which causes an increase in the functional diversity of zooplankton.
    Description: Em rios neotropicais a predação por peixes e a estruturação do habitat por macrófitas influenciam na dinâmica da comunidade zooplanctônica, alterando a riqueza e composição de espécies e a riqueza e composição funcional do zooplâncton e, assim, o funcionamento do ecossistema. Analisou-se a influência da estruturação dos bancos de macrófitas e a predação por espécies de peixes forrageiras sobre a diversidade taxonômica e funcional zooplanctônica, estimadas por diferentes índices de diversidade (riqueza taxonômica e funcional, diversidade beta taxonômica e diversidade beta funcional). Assim, supõe-se que diferentes níveis de estruturação por macrófitas e predação por peixes alterarão a composição taxonômica e funcional do zooplâncton (alfa e beta) entre os pontos analisados. A diversidade beta foi particionada em dois componentes distintos, o turnover e o aninhamento. A riqueza de espécies do zooplâncton associou-se de forma positiva com a riqueza de macrófitas e a diversidade de macrófitas. Por sua vez, a riqueza funcional do zooplâncton teve associação positiva com a riqueza de peixes e a riqueza de macrófitas. Para a variação da diversidade beta total taxonômica do zooplâncton, a Modelagem de Dissimilaridade Generalizada (GDM) explicou 32,58% do total dentre as variáveis preditoras. A biomassa de macrófitas representou o turnover taxonômico. A variação da diversidade beta total funcional do zooplâncton, explicou 9,98% pelo modelo da GDM. A abundância de peixes representou o aninhamento funcional. A estruturação por macrófitas representou os componentes taxonômicos e a predação representou os componentes funcionais. A heterogeneidade limnológica da região litorânea do rio Baía possibilitou a colonização por bancos de macrófitas multiespecíficos, influenciando na alteração da comunidade de peixes e de zooplâncton e quanto mais heterogêneas as condições ambientais, maior é a capacidade de colonização de diferentes espécies, que podem apresentar distintos traços funcionais. Os resultados indicam a importância da manutenção de locais heterogêneos, a necessidade de preservação dos tributários em sistemas rio-planície de inundação por servirem como berçário para desova de peixes e contribuir para uma maior riqueza de peixes, o que causa um aumento na diversidade funcional do zooplâncton.
    Description: Masters
    Keywords: Zooplâncton de água doce ; Riqueza taxonômica e funcional ; Diversidade beta ; Taxonomic richness ; Functional richness ; Beta diversity ; Nestedness ; Turnover ; Comunidades, Ecologia de ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::Y::Zooplankton ; ASFA_2015::M::Macrophytes ; ASFA_2015::T::Taxonomy ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::P::Predation
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 49pp.
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  • 7
    Publication Date: 2022-06-10
    Description: In fold and thrust belts developing at convergent margins, the migration of the advancing wedge is accompanied by bulging of the downgoing plate, followed by the development of a foredeep basin filled by a thick succession of syn-orogenic sediments. The transition from forebulge to foredeep marks a key moment in the evolution of the orogenic system. In deep water environments, the record of this transition is typically complete and progressive. Conversely, in the shallow-water/continental environment of many collisional systems, the uplift of the forebulge area can imply emersion and erosion, obliterating the stratigraphic record of key steps of the evolution of the orogenic system. The southern Apennines constitute one of these collisional fold and thrust belts where the development of the forebulge has implied emersion and erosion, with the development of a Miocene forebulge erosional unconformity, accompanied by extensional deformation associated with the bending of the lithosphere during the forebulge stage. In this paper, we use strontium isotope stratigraphy to constrain with unprecedented time-resolution the age of the forebulge unconformity in areas presently incorporated in the northern sector of the southern Apennines fold and thrust belt. Integration of our results and those of previous studies indicates, at the regional scale, a younging toward the foreland of the forebulge unconformity across the belt. Our highresolution ages also reveal a diachronous onset of the flexural subsidence over short distances, associated with the occurrence of horst and graben structures, possibly resulting from inherited paleotopography along with forebulge extension. This work highlights how high-resolution dating is critical to unravel the evolution of foreland basin systems at different scales.
    Description: Published
    Description: 105634
    Description: 6A. Geochimica per l'ambiente e geologia medica
    Description: 2TR. Ricostruzione e modellazione della struttura crostale
    Description: 2IT. Laboratori analitici e sperimentali
    Description: JCR Journal
    Keywords: Foreland basin system ; Forebulge unconformity ; Strontium isotope stratigraphy ; Forebulge extension ; Miocene ; Southern Apennines (Italy)
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 8
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-08-31
    Description: The construction of dams is among the main anthropogenic impacts in natural freshwater systems. The first consequence of impoundments is the formation of reservoirs upstream, which represents a completely new environment compared to the natural river. In addition to this primary impact, the variations in the reservoir water level may be considered another facet of disturbances. Although several studies investigated the processes that occur in reservoirs, there is a shortfall regarding the effects of the dam operation scheme on ecosystem health. Most dams are designed to operate under two almost contrasting schemes: storage (STR) and run-of-river (ROR). These alternative operation schemes result in very different temporal variations, with STR reservoirs presenting rapid fluctuations while ROR reservoirs have a relatively constant volume. Likewise, this difference in the temporal dynamics of water level likely affects the stability of these ecosystems. In order to investigate how the dam operation scheme could affect the temporal stability of freshwater ecosystems, we used the fish communities from two reservoirs in the Iguaçu River that operate under contrasting schemes. The hypothesis was that the STR reservoir would be less stable, considering the environmental heterogeneity created by frequent water level variations, and the interactions among species would be less important for the structure of the resident fish community. In the first approach, the focus was on stability in terms of the ability to resist and recover (i.e., resistance and resilience) to disturbances. In the second approach, empirical data and simulations were used to assess which mechanism (species interactions, environmental or demographic stochasticity) underlie the synchrony of fish communities. Contrary to the expectation, the results showed the ROR reservoir as less stable than the STR, and the mechanisms underlying species synchrony coincided between reservoirs but played opposite roles. More specifically, the temporal dynamics imposed by ROR operation may have weakened the species-environment relationships, which led to a less stable community. Although the results were consistent, they were only primary evidence and such cause-effect relationships between dam operation and its effects on ecosystem stability require further investigations.
    Description: A construção de barragens está entre os principais impactos antropogênicos em ambientes de água doce. A primeira consequência dos barramentos é a formação de um reservatório à montante, que representa um ambiente completamente modificado, em relação ao rio natural. Impactos secundários, como as variações no nível da água, também podem ser considerados outros tipos de distúrbio. Embora vários estudos investigaram os processos que ocorrem em reservatórios, existe uma lacuna a respeito dos efeitos do modo de operação da barragem sobre a estado dos ecossistemas. A maioria das barragens é projetada para operar sob dois modos: acumulação (ACU) e fio d’água (FDA). Esses modos alternativos resultam em variações temporais muito distintas, com reservatórios ACU apresentando flutuações rápidas, enquanto reservatórios FDA possuem volume relativamente constante. Do mesmo modo, essa diferença na dinâmica temporal do nível da água provavelmente afeta a estabilidade desses ecossistemas. A fim de investigar como o modo de operação da barragem pode afetar a estabilidade temporal dos ambientes de água doce, foram utilizadas comunidades de peixes de dois reservatórios do rio Iguaçu, que operam sob modos diferentes. A hipótese testada foi que o reservatório ACU seria menos estável, considerando a heterogeneidade ambiental criada pelas variações frequentes no nível da água, e as interações entre as espécies seriam menos importantes para a estrutura da comunidade de peixes. Na primeira abordagem, o foco foi na estabilidade em termos da habilidade em resistir e se recuperar (i.e., resistência e resiliência) aos distúrbios. Na segunda abordagem, dados empíricos e simulações foram utilizados para verificar quais mecanismos (interações entre espécies, ou estocasticidade ambiental/demográfica) seriam subjacentes à sincronia das comunidades de peixes. Ao contrário do esperado, os resultados mostraram que o reservatório FDA foi menos estável do que o reservatório ACU e os mecanismos subjacentes à sincronia das espécies coincidiram entre os reservatórios, mas com papéis opostos. Mais especificamente, a dinâmica temporal imposta pela operação do reservatório FDA provavelmente enfraqueceu as relações espécie-ambiente, o que levou a uma comunidade menos estável. Embora os resultados sejam consistentes, são apenas indícios primários e as relações de causa-e-efeito entre o modo de operação da barragem e a estabilidade dos ecossistemas requer investigações futuras.
    Description: PhD
    Keywords: Peixes de água doce ; Reservatórios de água doce ; Environmental stochasticity ; Reservatórios ; Comunidades, Ecologia de ; Competição interespecífica ; Impactos ambientais antropogênicos ; Manejo ; ASFA_2015::F::Freshwater fish ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::N::Niches ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::I::Impacts ; ASFA_2015::C::Competition ; ASFA_2015::R::Reservoirs (water) ; ASFA_2015::S::Species diversity ; ASFA_2015::I::Interactions ; ASFA_2015::I::Impoundments
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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  • 9
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-01
    Description: Plagioscion squamosissimus (Heckel, 1840) (Sciaenidae), known as “corvina” is a native species of Amazon basin and it is a model for studding their parasites. Intending to analyze ectoparasites ecological aspects, such as distribution and interactions, gills of twenty specimens were analyzed, from rio Tapajós, in the region of Santarém-PA, Brazil. Ecological analyzes considered distribution of parasites between host specimens and also microhabitats occupied by ectoparasites. Eighteen ectoparasites species were founded, fourteen monogenetic and four copepods. Considering species abundance, monogenetic were the dominant group and Euryhaliotrema thatcheri was the most abundant in all analyzed hosts. There was a significate correlation between some parasite species abundance and prevalence with total length and host condition factor. Each species of parasite presented an aggregate distribution pattern. The community of P. squamosissimus ectoparasites were interactive. Considering the distribution of the species in the gills, there was a significant difference in the composition between arches, segments and regions. It is suggested that this distribution is related to factors related to microhabitat, such as water flow and area available for fixation of parasites, as well as the structures of fixation of each species and interactions such as positive associations and competition. During the investigation of the material, specimens that differed from the species already described were founded, so three new monogenetic species were proposed, belonging to the genus Aetheolabes, Anakohnia and Euryhaliotrema, based on their morphological characteristics.
    Description: A corvina de água doce ou pescada branca, Plagioscion squamosissimus (Heckel, 1840) (Sciaenidae) se distribui pela bacia Amazônica e que como hospedeira, consiste em um modelo para o estudo de seus parasitas. Analisou-se os aspectos ecológicos da fauna ectoparasitária de P. squamosissimus, tais como a distribuição e as interações e entre as espécies, por meio das brânquias de vinte espécimes coletados no rio Tapajós, região de Santarém-PA. Considerou-se a distribuição de parasitas entre os espécimes de hospedeiros e também, a partir dos microhabitats que os ectoparasitas ocupavam nesses espécimes. Foram encontradas dezoito espécies de ectoparasitas, dentre os quais catorze monogenéticos e quatro copépodes. Em relação a abundância das espécies, os monogenéticos destacaram-se como grupo dominante e, dentre estas espécies, Euryhaliotrema thatcheri apresentou-se como a mais abundante em todos os hospedeiros analisados. Houve correlação da abundância e da prevalência de algumas espécies de parasitas com o comprimento total e o fator de condição dos hospedeiros. Cada espécie de parasita apresentou padrão de distribuição agregado. A comunidade de ectoparasitas de P. squamosissimus foi considerada interativa. Em relação à distribuição das espécies nas brânquias, houve diferença significativa na composição entre os arcos, segmentos e regiões. Sugere-se que esta distribuição se relaciona com fatores referentes ao microhabitat, como o fluxo de água e a área disponível para fixação dos parasitas, bem como as estruturas de fixação de cada espécie e também interações como associações positivas e competição. Durante a investigação do material, os espécimes encontrados diferiram das espécies previamente descritas, de modo que realizou-se a proposta de três novas espécies de monogenéticos pertencentes aos gêneros Aetheolabes, Anakohnia e Euryhaliotrema a partir de suas características morfológicas.
    Description: PhD
    Keywords: Fauna ectoparasitária ; Monogenea ; Copepoda ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::P::Parasites ; ASFA_2015::E::Ectoparasites ; ASFA_2015::E::Ectoparasitism
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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  • 10
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Peredo, E. L., & Cardon, Z. G. Shared up-regulation and contrasting down-regulation of gene expression distinguish desiccation-tolerant from intolerant green algae. Proceedings of the National Academy of Sciences of the United States of America, 117(29), 1(2020): 7438-17445, doi:10.1073/pnas.1906904117.
    Description: Among green plants, desiccation tolerance is common in seeds and spores but rare in leaves and other vegetative green tissues. Over the last two decades, genes have been identified whose expression is induced by desiccation in diverse, desiccation-tolerant (DT) taxa, including, e.g., late embryogenesis abundant proteins (LEA) and reactive oxygen species scavengers. This up-regulation is observed in DT resurrection plants, mosses, and green algae most closely related to these Embryophytes. Here we test whether this same suite of protective genes is up-regulated during desiccation in even more distantly related DT green algae, and, importantly, whether that up-regulation is unique to DT algae or also occurs in a desiccation-intolerant relative. We used three closely related aquatic and desert-derived green microalgae in the family Scenedesmaceae and capitalized on extraordinary desiccation tolerance in two of the species, contrasting with desiccation intolerance in the third. We found that during desiccation, all three species increased expression of common protective genes. The feature distinguishing gene expression in DT algae, however, was extensive down-regulation of gene expression associated with diverse metabolic processes during the desiccation time course, suggesting a switch from active growth to energy-saving metabolism. This widespread downshift did not occur in the desiccation-intolerant taxon. These results show that desiccation-induced up-regulation of expression of protective genes may be necessary but is not sufficient to confer desiccation tolerance. The data also suggest that desiccation tolerance may require induced protective mechanisms operating in concert with massive down-regulation of gene expression controlling numerous other aspects of metabolism.
    Description: Dr. Louise Lewis (University of Connecticut) provided F. rotunda and A. deserticola. Suzanne Thomas and Jordan Stark provided expert technical assistance. This work was supported by the NSF, Division of Integrative Organismal Systems (1355085 to Z.G.C.), and an anonymous donor (to Z.G.C.).
    Keywords: Aquatic green algae ; Desert-evolved green algae ; Extremophiles ; Microbiotic ; Crusts ; Scenedesmaceae
    Repository Name: Woods Hole Open Access Server
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  • 11
    Publication Date: 2022-10-31
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Northcutt, A. J., Kick, D. R., Otopalik, A. G., Goetz, B. M., Harris, R. M., Santin, J. M., Hofmann, H. A., Marder, E., & Schulz, D. J. Molecular profiling of single neurons of known identity in two ganglia from the crab Cancer borealis. Proceedings of the National Academy of Sciences of the United States of America, 116 (52) (2019): 26980-26990, doi: 10.1073/pnas.1911413116.
    Description: Understanding circuit organization depends on identification of cell types. Recent advances in transcriptional profiling methods have enabled classification of cell types by their gene expression. While exceptionally powerful and high throughput, the ground-truth validation of these methods is difficult: If cell type is unknown, how does one assess whether a given analysis accurately captures neuronal identity? To shed light on the capabilities and limitations of solely using transcriptional profiling for cell-type classification, we performed 2 forms of transcriptional profiling—RNA-seq and quantitative RT-PCR, in single, unambiguously identified neurons from 2 small crustacean neuronal networks: The stomatogastric and cardiac ganglia. We then combined our knowledge of cell type with unbiased clustering analyses and supervised machine learning to determine how accurately functionally defined neuron types can be classified by expression profile alone. The results demonstrate that expression profile is able to capture neuronal identity most accurately when combined with multimodal information that allows for post hoc grouping, so analysis can proceed from a supervised perspective. Solely unsupervised clustering can lead to misidentification and an inability to distinguish between 2 or more cell types. Therefore, this study supports the general utility of cell identification by transcriptional profiling, but adds a caution: It is difficult or impossible to know under what conditions transcriptional profiling alone is capable of assigning cell identity. Only by combining multiple modalities of information such as physiology, morphology, or innervation target can neuronal identity be unambiguously determined.
    Description: We thank members of the D.J.S., H.A.H., and E.M. laboratories for helpful discussions. We thank the Genomic Sequencing and Analysis Facility (The University of Texas [UT] at Austin) for library preparation and sequencing and the bioinformatics consulting team at the UT Austin Center for Computational Biology and Bioinformatics for helpful advice. This work was supported by National Institutes of Health grant R01MH046742-29 (to E.M. and D.J.S.) and the National Institute of General Medical Sciences T32GM008396 (support for A.J.N.) and National Institute of Mental Health grant 5R25MH059472-18 and the Grass Foundation (support for Neural Systems and Behavior Course at the Marine Biological Laboratory).
    Keywords: qPCR ; RNA-seq ; Stomatogastric ; Expression profiling
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  • 12
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Du, J., Park, K., Yu, X., Zhang, Y. J., & Ye, F. Massive pollutants released to Galveston Bay during Hurricane Harvey: Understanding their retention and pathway using Lagrangian numerical simulations. Science of the Total Environment, 704, (2019): 135364, doi: 10.1016/j.scitotenv.2019.135364.
    Description: Increasing frequency of extreme precipitation events under the future warming climate makes the storm-related pollutant release more and more threatening to coastal ecosystems. Hurricane Harvey, a 1000-year extreme precipitation event, caused massive pollutant release from the Houston metropolitan area to the adjacent Galveston Bay. 0.57 × 106 tons of raw sewage and 22,000 barrels of oil, refined fuels and chemicals were reportly released during Harvey, which would likely deteriorate the water quality and damage the coastal ecosystem. Using a Lagrangian particle-tracking method coupled with a validated 3D hydrodynamic model, we examined the retention, pathway, and fate of the released pollutants. A new timescale, local exposure time (LET), is introduced to quantitatively evaluate the spatially varying susceptibility inside the bay and over the shelf, with a larger LET indicating the region is more susceptible to the released pollutants. We found LET inside the bay is at least one order of magnitude larger for post-storm release than storm release due to a quick recovery in the system's flushing. More than 90% of pollutants released during the storm exited the bay within two days, while those released after the storm could stay inside the bay for up to three months. This implies that post-storm release is potentially more damaging to water quality and ecosystem health. Our results suggest that not only the amount of total pollutant load but also the release timing should be considered when assessing a storm's environmental and ecological influence, because there could be large amounts of pollutants steadily and slowly discharged after storm through groundwater, sewage systems, and reservoirs.
    Description: We like to acknowledge the Texas Coastal Management Program, the Texas General Land Office and NOAA for partial funding of this project through CMP Contract #19-040-000-B074. This work was performed using computing facilities at the College of William and Mary, which were provided by contributions from the National Science Foundation, the Commonwealth of Virginia Equipment Trust Fund and the Office of Naval Research.
    Keywords: Storm discharge ; Retention ; Local exposure time ; Particle tracking ; SCHISM
    Repository Name: Woods Hole Open Access Server
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  • 13
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mundl-Petermeier, A., Walker, R. J., Jackson, M. G., Blichert-Toft, J., Kurz, M. D., & Halldorsson, S. A. Temporal evolution of primordial tungsten-182 and he-3/He-4 signatures in the Iceland mantle plume. Chemical Geology, 525, (2019): 245-259. doi: 10.1016/j.chemgeo.2019.07.026.
    Description: Studies of short-lived radiogenic isotope systems and noble gas isotopic compositions of plume-derived rocks suggest the existence of primordial domains in Earth's present-day mantle. Tungsten-182 anomalies together with high 3He/4He in Phanerozoic rocks from large igneous provinces and ocean island basalts demonstrate the preservation of early-formed (within the first 60 Ma of solar system history) mantle domains tapped by modern mantle plumes. It has proven difficult to link the evidence for primordial domains with geochemical evidence for more recent processes, such as recycling. The Greenland-Iceland plume system, starting with eruptions of the Paleocene North Atlantic Igneous Province, is later manifested in the mid-Miocene to modern volcanic products of Iceland. Here, we report Pb isotopic compositions, μ182W (deviations in 182W/184W of a sample from a laboratory reference standard in parts per million), and 3He/4He, as well as highly siderophile element concentrations and Re-Os isotopic systematics of basaltic samples erupted at different times during the ~60 Ma history of the Greenland-Iceland plume. Paleocene samples from Greenland, representing the early stage of the mantle plume, are characterized by variable 3He/4He ranging from 7 to 48 R/RA (measured 3He/4He normalized to the atmospheric ratio) and an average μ182W of −4.0 ± 3.6 (2SD), within modern upper mantle-like values of 0 ± 4.5. The basalts from Iceland can be divided into two groups based on their Pb isotope compositions. One group, consisting mostly of Miocene basalts, is characterized by 206Pb/204Pb ranging from ~18.4 to 18.5, 3He/4He ranging from 17.8 to 40.2 R/RA, and μ182W values ranging from +1.7 to −9.1 ± 4.5. The other group, consisting mainly of Pleistocene and Holocene basalts, is characterized by higher 206Pb/204Pb, ranging from ~18.7 to 19.2, 3He/4He ranging from 7.9 to 25.7 R/RA, and μ182W values ranging from −0.6 to −11.7 ± 4.5. Collectively, the Greenland-Iceland suite examined requires mixing between a minimum of three mantle source domains characterized by distinct Pb-He-W isotopic compositions, in order to account for this range of isotopic data. The temporal changes in the isotopic data for these rocks appear to track the dominant contributing plume components as the system evolved. One of the domains is indistinguishable from the ambient upper oceanic mantle and contributed substantial material throughout the time progression. The other two domains are most likely primordial reservoirs that underwent limited de-gassing. Given the negative μ182W values in some rocks, one of these domains likely formed within the first 60 Ma of solar system history and is a major contributor to the youngest basalts. The isotopic characteristics of Greenland-Iceland plume-derived rocks reveal episodic changes in the source component proportions.
    Description: This study was supported by NSF grant EAR-1624587 (to RJW and AMP). AMP acknowledges FWF grant V659-N29. MJ acknowledges NSF grant EAR-1624840, and MK acknowledges OCE-1259218. We would like to thank Lotte M. Larsen and Asger K. Pedersen for providing the West Greenland samples, and Bernard Marty for the samples from East Greenland. We thank Catherine Chauvel for the editorial handling and Rita Parai, Dominique Weis, David Graham and an anonymous reviewer for the helpful and constructive comments on this and an earlier version of the manuscript.
    Keywords: μ182W ; Iceland ; Mantle plume ; 3He/4He ; Primordial reservoir
    Repository Name: Woods Hole Open Access Server
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  • 14
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Wheat, C. G., Seewald, J. S., & Takai, K. Fluid transport and reaction processes within a serpentinite mud volcano: South Chamorro Seamount. Geochimica Et Cosmochimica Acta, 269, (2020): 413-428, doi: 10.1016/j.gca.2019.10.037
    Description: Natural fluids with a pH (25 °C) up to 12.3 were collected from a sub-seafloor borehole observatory (Ocean Drilling Program (ODP) Hole 1200C) on South Chamorro Seamount, a serpentinite mud volcano in the Mariana forearc. We used systematic differences in the chemical compositions of pore waters from drilling operations during ODP Leg 195 and borehole fluids collected subsequently from Hole 1200C to define two endmember solutions, one of which was a sulfate-rich fluid with a methane concentration of 50 mM that ascends from the subduction channel and the other was a low-sulfate fluid. The sequence of sample collection and fluid compositions constrain subsurface hydrologic conditions. Deep-sourced, sulfate- and methane-rich, sterile fluids from the subduction channel can reach the seafloor unchanged within the central conduit, whereas other fluid pathways likely intersect the pelagic sediment that underlies the serpentinite mud volcano, providing potentially suitable conditions and inoculum for microbial anaerobic oxidation of methane (AOM). These AOM-affected, low-sulfate fluids also make it to the seafloor where they discharge. The source of the sulfate- and methane-rich fluid in the subduction channel is attributed to abiotic methane production fueled by hydrogen production from serpentinization and carbonate dissolution. This methane production includes a mechanism to raise the pH above values from serpentinization alone. Results from South Chamorro Seamount represent an end member along a transect defined by the distance from the trench. Results from this site are applied to other serpentinite mud volcanoes along this transect to speculate on likely chemical conditions within shallower and cooler portions of the subduction channel.
    Description: The authors thank the entire shipboard parties of cruises NT09-01 and NT09-07 on the R/V Nastushima and the crews and pilots of the ROV HyperDolphin. We also thank Tom Pettigrew for removing the dummy plug and designing the insert for the borehole. This research was supported by the National Science Foundation (OCE-0727120 and 1439564 (CGW) and OCE--0725204 (JS)) and the Japan Agency for Marine-Earth Science and Technology. This is C-DEBI contribution 497.
    Keywords: Serpentinization ; Mud volcano ; Subduction ; Mariana forearc ; Dissolved gases ; Anaerobic methane oxidation
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  • 15
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lebrato, M., Garbe-Schönberg, D., Müller, M. N., Blanco-Ameijeiras, S., Feely, R. A., Lorenzoni, L., Molinero, J. C., Bremer, K., Jones, D. O. B., Iglesias-Rodriguez, D., Greeley, D., Lamare, M. D., Paulmier, A., Graco, M., Cartes, J., Barcelos E Ramos, J., de Lara, A., Sanchez-Leal, R., Jimenez, P., Paparazzo, F. E., Hartman, S. E., Westernströer, U., Küter, M., Benavides, R., da Silva, A. F., Bell, S., Payne, C., Olafsdottir, S., Robinson, K., Jantunen, L. M., Korablev, A., Webster, R. J., Jones, E. M., Gilg, O., Bailly du Bois, P., Beldowski, J., Ashjian, C., Yahia, N. D., Twining, B., Chen, X. G., Tseng, L. C., Hwang, J. S., Dahms, H. U., & Oschlies, A. Global variability in seawater Mg:Ca and Sr:Ca ratios in the modern ocean. Proceedings of the National Academy of Sciences of the United States of America, 117(36), (2020): 22281-22292, doi:10.1073/pnas.1918943117.
    Description: Seawater Mg:Ca and Sr:Ca ratios are biogeochemical parameters reflecting the Earth–ocean–atmosphere dynamic exchange of elements. The ratios’ dependence on the environment and organisms' biology facilitates their application in marine sciences. Here, we present a measured single-laboratory dataset, combined with previous data, to test the assumption of limited seawater Mg:Ca and Sr:Ca variability across marine environments globally. High variability was found in open-ocean upwelling and polar regions, shelves/neritic and river-influenced areas, where seawater Mg:Ca and Sr:Ca ratios range from ∼4.40 to 6.40 mmol:mol and ∼6.95 to 9.80 mmol:mol, respectively. Open-ocean seawater Mg:Ca is semiconservative (∼4.90 to 5.30 mol:mol), while Sr:Ca is more variable and nonconservative (∼7.70 to 8.80 mmol:mol); both ratios are nonconservative in coastal seas. Further, the Ca, Mg, and Sr elemental fluxes are connected to large total alkalinity deviations from International Association for the Physical Sciences of the Oceans (IAPSO) standard values. Because there is significant modern seawater Mg:Ca and Sr:Ca ratios variability across marine environments we cannot absolutely assume that fossil archives using taxa-specific proxies reflect true global seawater chemistry but rather taxa- and process-specific ecosystem variations, reflecting regional conditions. This variability could reconcile secular seawater Mg:Ca and Sr:Ca ratio reconstructions using different taxa and techniques by assuming an error of 1 to 1.50 mol:mol, and 1 to 1.90 mmol:mol, respectively. The modern ratios’ variability is similar to the reconstructed rise over 20 Ma (Neogene Period), nurturing the question of seminonconservative behavior of Ca, Mg, and Sr over modern Earth geological history with an overlooked environmental effect.
    Description: We thank the researchers, staff, students, and volunteers in all the expeditions around the world for their contributions. One anonymous referee and Bernhard Peucker-Ehenbrink, Woods Hole Oceanographic Institution, contributed significantly to the final version of the manuscript. This study was developed under a grant from the Federal Ministry of Education and Research to D.G.-S. under contract 03F0722A, by the Kiel Cluster of Excellence “The Future Ocean” (D1067/87) to A.O. and M.L., and by the “European project on Ocean Acidification” (European Community’s Seventh Framework Programme FP7/2007-2013, grant agreement 211384) to A.O. and M.L. Additional funding was provided from project DOSMARES CTM2010-21810-C03-02, by the UK Natural Environment Research Council, to the National Oceanography Centre. This is Pacific Marine Environmental Laboratory contribution number 5046.
    Keywords: global ; seawater ; Mg:Ca ; Sr:Ca ; biogeochemistry
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  • 16
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Horowitz, E. J., Cochran, J. K., Bacon, M. P., & Hirschberg, D. J. 210Po and 210Pb distributions during a phytoplankton bloom in the North Atlantic: implications for POC export. Deep-Sea Research Part I: Oceanographic Research Papers, 164, (2020): 103339, doi:10.1016/j.dsr.2020.103339.
    Description: During the North Atlantic Bloom Experiment (NABE) of the Joint Global Ocean Flux Study (JGOFS), water column sampling for particulate and dissolved 210Po and 210Pb was performed four times (26 April and 4, 20, 30 May 1989) during a month-long Lagrangian time-series occupation of the NABE site, as well as one-time samplings at stations during transit to and from the site. There are few prior studies documenting short-term changes in 210Po and 210Pb profiles over the course of a phytoplankton bloom, and we interpret the profiles in terms of the classical “steady-state” (SS) approach used in most studies, as well as by using a non-steady state approach suggested by the temporal evolution of the profiles. Changes in 210Po profiles during a bloom are expectable as this radionuclide is scavenged and exported. During NABE, 210Pb profiles also displayed non-steady state, with significant increases in upper water column inventory occurring midway through the experiment. Export of 210Po from the upper 150 m using the classic “steady-state” model shows increases from 0.5 ± 8.5 dpm m−2 d−1 to 68.2 ± 4.2 dpm m−2 d−1 over the ~one-month occupation. Application of a non-steady state model, including changes in both 210Pb and 210Po profiles, gives higher 210Po export fluxes. Detailed depth profiles of particulate organic carbon (〉0.8 μm) and particulate 210Po (〉0.4 μm) are available from the 20 and 30 May samplings and show maxima in POC/Po at ~37 m. Applying the POC/210Po ratios at 150 m to the “steady state” 210Po fluxes yields POC export from the upper 150 m of 8.2 ± 1.5 mmol C m− 2 d−1 on 20 May and 6.0 ± 1.6 mmol C m−2 d−1 on 30 May. The non-steady state model applied to the interval 20 to 30 May yields POC export of 24.3 mmol C m−2 d−1. The non-steady state (NSS) 210Po-derived POC fluxes are comparable to, but somewhat less than, those estimated previously from 234Th/238U disequilibrium for the same time interval (37.3 and 45.0 mmol m−2 d−1, depending on the POC/Th ratio used). In comparison, POC fluxes measured with a floating sediment trap deployed at 150 m from 20 to 30 May were 11.6 mmol m−2 d−1. These results suggest that non-steady state Po-derived POC fluxes during the NABE agree well with those derived from 234Th/238U disequilibrium and agree with sediment trap fluxes within a factor of ~2. However, unlike the 234Th-POC flux proxy, non-steady stage changes in profiles of 210Pb, the precursor of 210Po, must be considered.
    Description: We are grateful to T. Hammar and A. Fleer (WHOI) for assistance at sea and in the laboratory. This work was supported originally by National Science Foundation (United States) grant OCE-8819544 to JKC and more recently by OCE-1736591. We thank Stephen Thurston (American Museum of Natural History) for graphics assistance Robert Aller, Steven Beaupre, and two anonymous reviewers for helpful comments.
    Keywords: Polonium-210 ; Lead-210 ; 210Po ; 210Pb ; North Atlantic ; Spring bloom ; POC flux
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  • 17
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lin, P., Pickart, R. S., Fissel, D., Ross, E., Kasper, J., Bahr, F., Torres, D. J., O'Brien, J., Borg, K., Melling, H., & Wiese, F. K. Circulation in the vicinity of Mackenzie Canyon from a year-long mooring array. Progress in Oceanography, 187, (2020): 102396, doi:10.1016/j.pocean.2020.102396.
    Description: Data from a five-mooring array extending from the inner shelf to the continental slope in the vicinity of Mackenzie Canyon, Beaufort Sea are analyzed to elucidate the components of the boundary current system and their variability. The array, part of the Marine Arctic Ecosystem Study (MARES), was deployed from October 2016 to September 2017. Four distinct currents were identified: an eastward-directed flow adjacent to the coast; a westward-flowing, surface-intensified current centered on the outer-shelf; a bottom-intensified shelfbreak jet flowing to the east; and a recirculation at the base of the continental slope within the canyon. The shelf current transports −0.120.03 Sv in the mean and is primarily wind-driven. The response is modulated by the presence of ice, with little-to-no signal during periods of nearly-immobile ice cover and maximum response when there is partial ice cover. The shelfbreak jet transports 0.030.02 Sv in the mean, compared to 0.080.02 Sv measured upstream in the Alaskan Beaufort Sea over the same time period. The loss of transport is consistent with a previous energetics analysis and the lack of Pacific-origin summer water downstream. The recirculation in the canyon appears to be the result of local dynamics whereby a portion of the westward-flowing southern limb of the Beaufort Gyre is diverted up the canyon across isobaths. This interpretation is supported by the fact that the low-frequency variability of the recirculation is correlated with the wind-stress curl in the Canada Basin, which drives the Beaufort gyre.
    Description: The authors are indebted to Fisheries and Oceans Canada for building the logistics for MARES into the at-sea missions of the Integrated Beaufort Observatory. We are grateful to the captain and crew of the CCGS Sir Wilfred Laurier for ably deploying and recovering the MARES array. Marshall Swartz assisted with the cruise preparation logistics. We thank the two anonymous reviewers for their input which helped improve the paper. This project was funded by the US Bureau of Ocean Energy Management (BOEM), on behalf of the National Ocean Partnership Program. The Canadian contribution was supported by the Environmental Studies Research Fund (ESRF Project 2014-02N). MARES publication 003.
    Keywords: Canadian Beaufort Sea ; Mackenzie Canyon ; Boundary currents ; Canyon circulation ; Ice-ocean interaction
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  • 18
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Chakraborty, A., Ruff, S. E., Dong, X., Ellefson, E. D., Li, C., Brooks, J. M., McBee, J., Bernard, B. B., & Hubert, C. R. J. Hydrocarbon seepage in the deep seabed links subsurface and seafloor biospheres. Proceedings of the National Academy of Sciences of the United States of America, 117(20), (2020): 11029-11037, doi: 10.1073/pnas.2002289117.
    Description: Marine cold seeps transmit fluids between the subseafloor and seafloor biospheres through upward migration of hydrocarbons that originate in deep sediment layers. It remains unclear how geofluids influence the composition of the seabed microbiome and if they transport deep subsurface life up to the surface. Here we analyzed 172 marine surficial sediments from the deep-water Eastern Gulf of Mexico to assess whether hydrocarbon fluid migration is a mechanism for upward microbial dispersal. While 132 of these sediments contained migrated liquid hydrocarbons, evidence of continuous advective transport of thermogenic alkane gases was observed in 11 sediments. Gas seeps harbored distinct microbial communities featuring bacteria and archaea that are well-known inhabitants of deep biosphere sediments. Specifically, 25 distinct sequence variants within the uncultivated bacterial phyla Atribacteria and Aminicenantes and the archaeal order Thermoprofundales occurred in significantly greater relative sequence abundance along with well-known seep-colonizing members of the bacterial genus Sulfurovum, in the gas-positive sediments. Metabolic predictions guided by metagenome-assembled genomes suggested these organisms are anaerobic heterotrophs capable of nonrespiratory breakdown of organic matter, likely enabling them to inhabit energy-limited deep subseafloor ecosystems. These results point to petroleum geofluids as a vector for the advection-assisted upward dispersal of deep biosphere microbes from subsurface to surface environments, shaping the microbiome of cold seep sediments and providing a general mechanism for the maintenance of microbial diversity in the deep sea.
    Description: We wish to thank Jody Sandel as well as the crew of R/V GeoExplorer for collection of piston cores, onboard core processing, sample preservation, and shipment. Cynthia Kwan and Oliver Horanszky are thanked for assistance with amplicon library preparation. We also wish to thank Jayne Rattray, Daniel Gittins, and Marc Strous for valuable discussions and suggestions, and Rhonda Clark for research support. Collaborations with Andy Mort from the Geological Survey of Canada, and Richard Hatton from Geoscience Wales are also gratefully acknowledged. This work was financially supported by a Mitacs Elevate Postdoctoral Fellowship awarded to A.C.; an Alberta Innovates-Technology Futures/Eyes High Postdoctoral Fellowship to S.E.R.; and a Natural Sciences and Engineering Research Council Strategic Project Grant, a Genome Canada Genomics Applications Partnership Program grant, a Canada Foundation for Innovation grant (CFI-JELF 33752) for instrumentation, and Campus Alberta Innovates Program Chair funding to C.R.J.H.
    Keywords: Deep biosphere ; Microbiome ; Dispersal
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  • 19
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in MBL Hernandez, C. M., van Daalen, S. F., Caswell, H., Neubert, M. G., & Gribble, K. E. A demographic and evolutionary analysis of maternal effect senescence. Proceedings of the National Academy of Sciences of the United States of America, 17(28), (2020):16431-16437, doi: 10.1073/pnas.1919988117.
    Description: Maternal effect senescence—a decline in offspring survival or fertility with maternal age—has been demonstrated in many taxa, including humans. Despite decades of phenotypic studies, questions remain about how maternal effect senescence impacts evolutionary fitness. To understand the influence of maternal effect senescence on population dynamics, fitness, and selection, we developed matrix population models in which individuals are jointly classified by age and maternal age. We fit these models to data from individual-based culture experiments on the aquatic invertebrate, Brachionus manjavacas (Rotifera). By comparing models with and without maternal effects, we found that maternal effect senescence significantly reduces fitness for B. manjavacas and that this decrease arises primarily through reduced fertility, particularly at maternal ages corresponding to peak reproductive output. We also used the models to estimate selection gradients, which measure the strength of selection, in both high growth rate (laboratory) and two simulated low growth rate environments. In all environments, selection gradients on survival and fertility decrease with increasing age. They also decrease with increasing maternal age for late maternal ages, implying that maternal effect senescence can evolve through the same process as in Hamilton’s theory of the evolution of age-related senescence. The models we developed are widely applicable to evaluate the fitness consequences of maternal effect senescence across species with diverse aging and fertility schedule phenotypes.
    Description: K.E.G. was supported by Grant 5K01AG049049 from the National Institute on Aging and by the Bay and Paul Foundations. H.C. and S.F.v.D. were supported by the European Research Council through Advanced Grants 322829 and 788195 and by the Dutch Research Council through Grant ALWOP.2015.100. C.M.H. was supported by a National Science Foundation Graduate Research Fellowship. M.G.N. received funding from The Paul MacDonald Fye Chair for Excellence in Oceanography at the Woods Hole Oceanographic Institution.
    Keywords: Aging ; Demography ; Fitness ; Maternal effects ; Selection gradients
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  • 20
    Publication Date: 2022-10-27
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hirst, W. G., Biswas, A., Mahalingan, K. K., & Reber, S. Differences in intrinsic tubulin dynamic properties contribute to spindle length control in Xenopus species. Current Biology, 30(11), (2020): 2184-2190.e5, doi: 10.1016/j.cub.2020.03.067.
    Description: The function of cellular organelles relates not only to their molecular composition but also to their size. However, how the size of dynamic mesoscale structures is established and maintained remains poorly understood [1, 2, 3]. Mitotic spindle length, for example, varies several-fold among cell types and among different organisms [4]. Although most studies on spindle size control focus on changes in proteins that regulate microtubule dynamics [5, 6, 7, 8], the contribution of the spindle’s main building block, the αβ-tubulin heterodimer, has yet to be studied. Apart from microtubule-associated proteins and motors, two factors have been shown to contribute to the heterogeneity of microtubule dynamics: tubulin isoform composition [9, 10] and post-translational modifications [11]. In the past, studying the contribution of tubulin and microtubules to spindle assembly has been limited by the fact that physiologically relevant tubulins were not available. Here, we show that tubulins purified from two closely related frogs, Xenopus laevis and Xenopus tropicalis, have surprisingly different microtubule dynamics in vitro. X. laevis microtubules combine very fast growth and infrequent catastrophes. In contrast, X. tropicalis microtubules grow slower and catastrophe more frequently. We show that spindle length and microtubule mass can be controlled by titrating the ratios of the tubulins from the two frog species. Furthermore, we combine our in vitro reconstitution assay and egg extract experiments with computational modeling to show that differences in intrinsic properties of different tubulins contribute to the control of microtubule mass and therefore set steady-state spindle length.
    Description: This article was prompted by our stay at the Marine Biological Laboratory (MBL), Woods Hole, MA in the summer of 2016 funded by the Princeton-Humboldt Strategic Partnership Grant together with the lab of Sabine Petry (Princeton University). We thank Jeff Woodruff (UT Southwestern), David Drechsel (IMP), and Marcus J. Taylor (MPI IB) for constructive criticism and comments on the manuscript and Helena Jambor for constructive comments on figure design. We thank the AMBIO imaging facility (Charité, Berlin) and Nikon at MBL for imaging support, Aliona Bogdanova and Barbara Borgonovo (MPI CBG) for their help with protein purification, and Francois Nedelec (University of Cambridge) for help with Cytosim. We are grateful to the Görlich lab (MPI BPC), in particular Bastian Hülsmann and Jens Krull, and the NXR for supply with X. tropicalis frogs. We thank Antonina Roll-Mecak (National Institute of Neurological Disorders and Stroke) for help with mass spectrometry analysis and discussions and Duck-Yeon Lee in the Biochemistry Core (National Heart, Lung and Blood Institute) for access to mass spectrometers. For mass spectrometry, we would like to acknowledge the assistance of Benno Kuropka and Chris Weise from the Core Facility BioSupraMol supported by the Deutsche Forschungsgemeinschaft (DFG). We thank all former and current members of the Reber lab for discussion and helpful advice, in particular, Christoph Hentschel and Soma Zsoter for technical assistance and Sebastian Reusch for help with tubulin purification. S.R. acknowledges funding from the IRI Life Sciences (Humboldt-Universität zu Berlin, Excellence Initiative/DFG). W.G.H. was supported by the Alliance Berlin Canberra co-funded by a grant from the Deutsche Forschungsgemeinschaft (DFG) for the International Research Training Group (IRTG) 2290 and the Australian National University. K.K.M. was supported by funds in the Roll-Mecak lab, intramural program of the National Institute of Neurological Disorders and Stroke.
    Keywords: Spindle scaling ; Tubulin ; Microtubule dynamics ; Xenopus ; Spindle length
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  • 21
    Publication Date: 2022-10-26
    Description: Author Posting. © National Academy of Sciences, 2020. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 117(22), (2020): 12215-12221, doi: 10.1073/pnas.1918439117.
    Description: Picophytoplankton are the most abundant primary producers in the ocean. Knowledge of their community dynamics is key to understanding their role in marine food webs and global biogeochemical cycles. To this end, we analyzed a 16-y time series of observations of a phytoplankton community at a nearshore site on the Northeast US Shelf. We used a size-structured population model to estimate in situ division rates for the picoeukaryote assemblage and compared the dynamics with those of the picocyanobacteria Synechococcus at the same location. We found that the picoeukaryotes divide at roughly twice the rate of the more abundant Synechococcus and are subject to greater loss rates (likely from viral lysis and zooplankton grazing). We describe the dynamics of these groups across short and long timescales and conclude that, despite their taxonomic differences, their populations respond similarly to changes in the biotic and abiotic environment. Both groups appear to be temperature limited in the spring and light limited in the fall and to experience greater mortality during the day than at night. Compared with Synechococcus, the picoeukaryotes are subject to greater top-down control and contribute more to the region’s primary productivity than their standing stocks suggest.
    Description: We thank E. T. Crockford, E. E. Peacock, J. Fredericks, Z. Sandwith, the MVCO Operations Team, and divers of the Woods Hole Oceanographic Institution diving program. This work was supported by NSF Grants OCE-0119915 (to R.J.O. and H.M.S.) and OCE-1655686 (to M.G.N., R.J.O., A.R.S., and H.M.O.); NASA Grants NNX11AF07G (to H.M.S.) and NNX13AC98G (to H.M.S.); Gordon and Betty Moore Foundation Grant GGA#934 (to H.M.S.); and Simons Foundation Grant 561126 (to H.M.S.).
    Description: 2020-11-15
    Keywords: Picoeukaryotes ; Flow cytometry ; Matrix model ; Primary productivity
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  • 22
    Publication Date: 2022-10-26
    Description: © The Author(s), 202. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in McDermott, J. M., Sylva, S. P., Ono, S., German, C. R., & Seewald, J. S. Abiotic redox reactions in hydrothermal mixing zones: decreased energy availability for the subsurface biosphere. Proceedings of the National Academy of Sciences of the United States of America, 117(34), (2020): 20453-20461, doi:10.1073/pnas.2003108117.
    Description: Subseafloor mixing of high-temperature hot-spring fluids with cold seawater creates intermediate-temperature diffuse fluids that are replete with potential chemical energy. This energy can be harnessed by a chemosynthetic biosphere that permeates hydrothermal regions on Earth. Shifts in the abundance of redox-reactive species in diffuse fluids are often interpreted to reflect the direct influence of subseafloor microbial activity on fluid geochemical budgets. Here, we examine hydrothermal fluids venting at 44 to 149 °C at the Piccard hydrothermal field that span the canonical 122 °C limit to life, and thus provide a rare opportunity to study the transition between habitable and uninhabitable environments. In contrast with previous studies, we show that hydrocarbons are contributed by biomass pyrolysis, while abiotic sulfate (SO42−) reduction produces large depletions in H2. The latter process consumes energy that could otherwise support key metabolic strategies employed by the subseafloor biosphere. Available Gibbs free energy is reduced by 71 to 86% across the habitable temperature range for both hydrogenotrophic SO42− reduction to hydrogen sulfide (H2S) and carbon dioxide (CO2) reduction to methane (CH4). The abiotic H2 sink we identify has implications for the productivity of subseafloor microbial ecosystems and is an important process to consider within models of H2 production and consumption in young oceanic crust.
    Description: Financial support was provided by the National Aeronautics and Space Administration (NASA) Astrobiology program (Awards NNX09AB75G and 80NSSC19K1427 to C.R.G. and J.S.S.) and the NSF (Award OCE-1061863 to C.R.G. and J.S.S.). Ship and vehicle time for cruise FK008 was provided by the Schmidt Ocean Institute. We thank the ROV Jason II and HROV Nereus groups, and the captain, officers, and crew of R/V Atlantis (AT18-16) and R/V Falkor (FK008) for their dedication to skillful operations at sea. We thank our scientific colleagues from both cruises, as well as Meg Tivey, Frieder Klein, and Scott Wankel for insightful discussions. We are grateful to the editor and two anonymous reviewers for providing helpful comments and suggestions.
    Keywords: Hydrothermal vent ; Subsurface biosphere ; Bioenergetics ; Biogeochemistry
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  • 23
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marty, B., Almayrac, M., Barry, P. H., Bekaert, D., V., Broadley, M. W., Byrne, D. J., Ballentine, C. J., & Caracausi, A. An evaluation of the C/N ratio of the mantle from natural CO2-rich gas analysis: Geochemical and cosmochemical implications. Earth and Planetary Science Letters, 551, (2020): 116574, doi:10.1016/j.epsl.2020.116574.
    Description: The terrestrial carbon to nitrogen ratio is a key geochemical parameter that can provide information on the nature of Earth's precursors, accretion/differentiation processes of our planet, as well as on the volatile budget of Earth. In principle, this ratio can be determined from the analysis of volatile elements trapped in mantle-derived rocks like mid-ocean ridge basalts (MORB), corrected for fractional degassing during eruption. However, this correction is critical and previous attempts have adopted different approaches which led to contrasting C/N estimates for the bulk silicate Earth (BSE) (Marty and Zimmermann, 1999; Bergin et al., 2015). Here we consider the analysis of CO2-rich gases worldwide for which a mantle origin has been determined using noble gas isotopes in order to evaluate the C/N ratio of the mantle source regions. These gases experienced little fractionation due to degassing, as indicated by radiogenic 4He / 40Ar* values (where 4He and 40Ar* are produced by the decay of U+Th, and 40K isotopes, respectively) close to the mantle production/accumulation values. The C/N and C/3 He ratios of gases investigated here are within the range of values previously observed in oceanic basalts. They point to an elevated mantle C/N ratio (∼350-470, molar) higher than those of potential cosmochemical accretionary endmembers. For example, the BSE C/N and 36 Ar / N ratios (160-220 and 75 x 10-7, respectively) are higher than those of CM-CI chondrites but within the range of CV-CO groups. This similarity suggests that the Earth accreted from evolved planetary precursors depleted in volatile and moderately volatile elements. Hence the high C / N composition of the BSE may be an inherited feature rather than the result of terrestrial differentiation. The C / N and 36 Ar / N ratios of the surface (atmosphere plus crust) and of the mantle cannot be easily linked to any known chondritic composition. However, these compositions are consistent with early sequestration of carbon into the mantle (but not N and noble gases), permitting the establishment of clement temperatures at the surface of our planet.
    Description: M.A, D.V.B, M.W.B, D.J.B and B.M were supported by the European Research Council (PHOTONIS project, grant agreement No. 695618 to B.M.). Samples were collected as part of Study # YELL-08056 - Xenon anomalies in the Yellowstone Hotspot. We would like to thank Annie Carlson and all of the rangers at the Yellowstone National Park for providing invaluable advice and help when collecting the samples. This work was partially supported by a grant (G-2016-7206) from the Alfred P. Sloan Foundation and the Deep Carbon Observatory to P.H.B as well as NSF award 2015789 to P.H.B.. Sampling at Mt. Etna and gas analysis was supported by Instituto Nazionale di Geofisica e Vulcanologia Palermo. Fruitful discussions with Marc Hirschmann helped us to shape the ideas presented in this work. We acknowledge detailed and insightful reviews by Sami Mikhail and an anonymous reviewer, and efficient editing by Frederic Moynier. This is CRPG contribution 2741.
    Keywords: Carbon ; Nitrogen ; Earth ; Mantle ; Gases
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  • 24
    Publication Date: 2022-10-26
    Description: Author Posting. © National Academy of Sciences, 2020. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences (2020): 201913625, doi: 10.1073/pnas.1913625117.
    Description: Oceanic transform faults display a unique combination of seismic and aseismic slip behavior, including a large globally averaged seismic deficit, and the local occurrence of repeating magnitude (M) ∼6 earthquakes with abundant foreshocks and seismic swarms, as on the Gofar transform of the East Pacific Rise and the Blanco Ridge in the northeast Pacific Ocean. However, the underlying mechanisms that govern the partitioning between seismic and aseismic slip and their interaction remain unclear. Here we present a numerical modeling study of earthquake sequences and aseismic transient slip on oceanic transform faults. In the model, strong dilatancy strengthening, supported by seismic imaging that indicates enhanced fluid-filled porosity and possible hydrothermal circulation down to the brittle–ductile transition, effectively stabilizes along-strike seismic rupture propagation and results in rupture barriers where aseismic transients arise episodically. The modeled slow slip migrates along the barrier zones at speeds ∼10 to 600 m/h, spatiotemporally correlated with the observed migration of seismic swarms on the Gofar transform. Our model thus suggests the possible prevalence of episodic aseismic transients in M ∼6 rupture barrier zones that host active swarms on oceanic transform faults and provides candidates for future seafloor geodesy experiments to verify the relation between aseismic fault slip, earthquake swarms, and fault zone hydromechanical properties.
    Description: We thank Joan Gomberg, Ruth Harris, Steve Hickman, Shane Detweiler, Mike Diggles, and two anonymous external reviewers for their thoughtful comments that helped to improve the manuscript. This study was supported by Natural Sciences and Engineering Research Council of Canada Discovery Grants RGPIN/418338-2012 and RGPIN-2018-05389; and NSF Grants OCE-10-61203 and OCE-18-33279.
    Description: 2020-10-28
    Keywords: Oceanic transform faults ; Earthquake rupture segmentation ; Aseismic transients ; Seismic swarms
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  • 25
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Buesseler, K. O., Boyd, P. W., Black, E. E., & Siegel, D. A. Metrics that matter for assessing the ocean biological carbon pump. Proceedings of the National Academy of Sciences of the United States of America, (2020): 201918114, doi: 10.1073/pnas.1918114117.
    Description: The biological carbon pump (BCP) comprises wide-ranging processes that set carbon supply, consumption, and storage in the oceans’ interior. It is becoming increasingly evident that small changes in the efficiency of the BCP can significantly alter ocean carbon sequestration and, thus, atmospheric CO2 and climate, as well as the functioning of midwater ecosystems. Earth system models, including those used by the United Nation’s Intergovernmental Panel on Climate Change, most often assess POC (particulate organic carbon) flux into the ocean interior at a fixed reference depth. The extrapolation of these fluxes to other depths, which defines the BCP efficiencies, is often executed using an idealized and empirically based flux-vs.-depth relationship, often referred to as the “Martin curve.” We use a new compilation of POC fluxes in the upper ocean to reveal very different patterns in BCP efficiencies depending upon whether the fluxes are assessed at a fixed reference depth or relative to the depth of the sunlit euphotic zone (Ez). We find that the fixed-depth approach underestimates BCP efficiencies when the Ez is shallow, and vice versa. This adjustment alters regional assessments of BCP efficiencies as well as global carbon budgets and the interpretation of prior BCP studies. With several international studies recently underway to study the ocean BCP, there are new and unique opportunities to improve our understanding of the mechanistic controls on BCP efficiencies. However, we will only be able to compare results between studies if we use a common set of Ez-based metrics.
    Description: We thank the many scientists whose ideas and contributions over the years are the foundation of this paper. This includes A. Martin, who led the organization of the BIARRITZ group (now JETZON) workshop in July 2019, discussions at which helped to motivate this article. We thank D. Karl for pointing us in the right direction for this paper format at PNAS and two thoughtful reviewers who through their comments helped to improve this manuscript. Support for writing this piece is acknowledged from several sources, including the Woods Hole Oceanographic Institution’s Ocean Twilight Zone project (K.O.B.); NASA as part of the EXport Processes in the global Ocean from RemoTe Sensing (EXPORTS) program (K.O.B. and D.A.S.). E.E.B. was supported by a postdoctoral fellowship through the Ocean Frontier Institute at Dalhousie University. P.W.B. was supported by the Australian Research Council through a Laureate (FL160100131).
    Keywords: Biological carbon pump ; Twilight zone ; Particle flux
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  • 26
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    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-01
    Description: Generalist species can be composed of specialist individuals, who use a small part of the population's niche. This process is known as individual specialization and can involve changes in diet and morphology. In this study, we hypothesized that individual variations in the diet and morphology of fish associated with macrophytes are related to the habitat’s complexity and greater levels of individual specialization will be found in the intermediate levels of macrophyte biomass. Fish and macrophytes were sampled in 30 multispecific macrophytes stands with different biomasses in a 13.7 km stretch of the rio Baía (Paraná River floodplain). Habitat complexity was assessed using the biomass of aquatic macrophytes (five stands with low biomass, five with intermediate biomass and five with high biomass were selected) and the fish species used in this study was Moenkhausia forestii. The individuals' diet was evaluated using the volumetric method, and the morphology through 18 linear measurements and six area measurements. To assess individual specialization in the diet, the Specialization Index (IS) and the NODF nesting index were used. Individual morphological specialization was assessed using ecomorphological diversity for each level of macrophyte biomass. Correlations between diet and morphology were assessed using the Mantel test. IS and NODF values indicated greater individual specialization in the diet in macrophytes stands with low biomass. The greatest individual morphological specialization was found in macrophytes stands with intermediate biomasses. The Mantel test showed that there was no significant correlation between diet and morphology. The individual specialization of M. forestii diet is related to the increase in competition, mainly intraspecific, intensified by the low availability of resources in low biomass stands. Morphological specialization, in turn, is related to greater availability and accessibility to resources within the intermediate biomass stands, where there are ideal conditions for increasing richness and abundance of resources and little structural complexity when compared to high biomass stands.
    Description: Espécies generalistas podem ser compostas por indivíduos especialistas, que utilizam uma pequena parte do nicho da população. Este processo é conhecido como especialização individual e pode envolver mudanças na dieta e na morfologia. Investigou-se a hipótese de que variações individuais na dieta e na morfologia de peixes associados à macrófitas estão relacionadas à complexidade do habitat e que maiores níveis de especialização individual serão encontrados nos níveis intermediários de biomassa de macrófitas. Foram amostrados peixes e macrófitas em 30 bancos multiespecíficos de macrófitas com diferentes biomassas em um trecho de 13,7 km de extensão do rio Baía (planície de inundação do rio Paraná). A complexidade do habitat foi medida por meio da biomassa das macrófitas aquáticas (selecionou-se cinco bancos com biomassas baixas, cinco com biomassas intermediárias e cinco com biomassas altas) e a espécie de peixe utilizada foi Moenkhausia forestii. Analisou-se a dieta dos indivíduos mediante o método volumétrico e a morfologia mediante 18 medidas lineares e seis medidas de área. Para avaliar a especialização individual na dieta utilizou-se o Índice de Especialização (IS) e o Índice NODF de aninhamento. A especialização individual morfológica foi avaliada por intermédio da diversidade ecomorfológica para cada nível de biomassa de macrófitas. As correlações entre a dieta e a morfologia foram avaliadas por meio de um teste de Mantel. Os valores de IS e NODF indicaram maior especialização individual na dieta em bancos de macrófitas com baixas biomassas. A maior especialização morfológica individual foi verificada em bancos de macrófitas com biomassas intermediárias. O teste de Mantel mostrou que não houve correlação significativa entre a dieta e a morfologia. A especialização individual da dieta de M. forestii está relacionada com o aumento da competição, principalmente intraespecífica, intensificada pela baixa disponibilidade de recursos nos bancos de baixas biomassas. A especialização morfológica por sua vez está relacionada com a maior disponibilidade e acessibilidade aos recursos dentro dos bancos de biomassas intermediárias, onde existem condições ideais para o aumento da riqueza e abundância de recursos e pouca complexidade estrutural quando comparado aos bancos de biomassa alta.
    Description: Masters
    Keywords: Populações, Ecologia de ; Ecologia trófica ; Macrófitas aquáticas ; Especialização individual ; Indivíduos da mesma espécie ; Complexidade estrutural ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::A::Aquatic plants ; ASFA_2015::M::Macrophytes ; ASFA_2015::P::Population dynamics ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::P::Population structure ; ASFA_2015::T::Trophic levels
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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  • 27
    Publication Date: 2022-06-09
    Description: Joint analysis of high-penetration multi-channel and high-resolution single-channel seismic reflection profiles, calibrated by deep well boreholes, allowed a detailed reconstruction of the Late Miocene to Recent tectonic history of the Capo Granitola and Sciacca fault systems offshore southwestern Sicily. These two fault arrays are part of a regional system of transcurrent faults that dissect the foreland block in front of the Neogene Sicilian fold and thrust belt. The Capo Granitola and Sciacca faults are thought to reactivate inherited Mesozoic to Miocene normal faults developed on the northern continental margin of Africa. During Latest Miocene-Pliocene, the two ~NNE-SSW striking faults were active in left transpression, which inverted Late Miocene extensional half-grabens and created push-up ridges along both systems. Tectonic activity decreased during the Pleistocene, but transpressional folds deform Middle-Late Pleistocene sediments as well, suggesting that the two fault systems are active. The ~40 km long longitudinal amplitude profile of 1st order folds (Capo Granitola and Sciacca anticlines) shows ~15–20 km bell-shaped undulations that represents 2nd order folds. The length of these undulations together with the map pattern of faults allowed to divide the CGFS and SFS into two segments, northern and southern, respectively. Total uplift of the Sciacca Anticline is twice than the uplift of the Capo Granitola Anticline. Incremental fold growth rates decreased during time from 0.22 mm/yr (Capo Granitola Anticline) and 0.44 mm/yr (Sciacca Anticline) in the Pliocene, to 0.07 and 0.22 mm/yr, respectively, during the last ~1.8 Ma.
    Description: Published
    Description: 187-204
    Description: 2T. Deformazione crostale attiva
    Description: 3A. Geofisica marina e osservazioni multiparametriche a fondo mare
    Description: JCR Journal
    Keywords: Multiscale analysis ; Basin inversion ; Strike-slip faults ; Fold growth rates ; Pelagian foreland ; SW Sicily offshore ; 04.07. Tectonophysics ; 04.04. Geology ; 04.02. Exploration geophysics
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 28
    Publication Date: 2022-06-14
    Description: Observations from satellites provide high-resolution images of ground deformation allowing to infer deformation sources by developing advanced modeling of magma ascent and intrusion processes. Nevertheless, such models can be strongly biased without a precise model of the internal structure of the volcano. In this study, we jointly exploited two interferometric techniques to interpret the 2011–2013 unrest at Campi Flegrei caldera (CFc). The first is the Interferometric Synthetic Aperture Radar (InSAR) technique, which provides highly-resolved spatial and temporal images of ground deformation. The second is the Ambient Noise Tomography (ANT), which images subsurface structures, providing the constraints necessary to infer the depth of the shallow source at CFc (between 0.8 and 1.2 km). We applied for the first time a tool to delineate the deformation source boundaries from the observed deformation maps: the Total Horizontal Derivative (THD) technique. The THD processes the vertical component of the ground deformation field detected through InSAR applied to COSMO-SkyMed data. The patterns retrieved by applying the THD technique show consistent spatial correlations with (1) the seismic group-velocity maps achieved through the ANT and (2) the distribution of the earthquakes nucleated during the unrest at ~1 km. High-velocity anomalies, the retrieved geometrical features of the deformation field, and the spatial distribution of seismicity coincide with extinct volcanic vents in the eastern part of the caldera (Solfatara/ Pisciarelli and Astroni). Such a coincidence hints at a significant role of the extinct plumbing system in either constraining or channeling the eastward propagation of magmatic fluids. Here, we demonstrated that a joint analysis of the InSAR patterns, seismic structures, and seismicity allows us to model in space and time the characteristics and nature of the shallow deformation source at CFc. Using published literature, we show that the effects of structural heterogeneities at shallow depths may have a more significant early-stage impact on the evolution of the surface displacement signals than deeper magmatic sources: these secondary structural effects may produce local amplification in the deformation records which can be mistakenly interpreted as early signals of impending eruptions. The achieved results are particularly relevant for the understanding of the origin of deformation signal at volcanoes where magma propagation within sills is expected, as at CFc.
    Description: Published
    Description: 111440
    Description: 2V. Struttura e sistema di alimentazione dei vulcani
    Description: JCR Journal
    Keywords: InSAR ; Ambient noise tomography ; Total horizontal derivative ; Campi Flegrei caldera ; Natural seismicity
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 29
    Publication Date: 2022-06-10
    Description: Active lava lakes represent a variety of open-vent volcanism in which a sizable body of lava accumulates at the top of the magma column, constrained by the vent and/or crater geometry. The longevity of lava lakes reflects a balancing of cooling and outgassing occurring at the surface and input of hot and gas-rich magma from below. Due to their longevity and relative accessibility, lava lakes provide a natural laboratory for studying fundamental volcanic processes such as degassing, convection and cooling. This article examines all seven lakes that existed at the time of writing in 2018, located in the Pacific, Antarctica, Africa, and South and Central America. These lakes span all tectonic environments, and a range of magma compositions. We focus on analysis of the lake surface motion using image velocimetry, which reveals both similarities and contrasts in outgassing and lake dynamics when comparing the different lakes. We identify two categories of lake behavior: Organized (Erta’Ale, Nyiragongo, Kīlauea after 2011, and Erebus) and Chaotic (Villarrica, Masaya, Marum). This division does not map directly to lake size, viscosity, gas emission rate, or temperature. Instead, when examined together, we find that the lakes follow a linear relationship between average surface speed and the ratio of total gas flux to lake surface area. This relationship points to the combined importance of both flux and lake size in addition to the total volume of gas emission, and suggests that a shared deep mechanism controls the supply of heat and gas to all lakes. On the other hand, the differences between Chaotic and Organized lakes highlight the important role of the geometry of the conduit-lake transition, which superimposes a shallow signal on that of the deep circulation. The spatial patterns of surface motion we document suggest that the release of gas bubbles at Chaotic lakes is more efficient (i.e., bubbles are less likely to be retained and recycled) compared with Organized lakes. In addition, the data presented here indicate that the solidified crust of Organized lakes plays a role in regulating convection and outgassing in lava lakes.
    Description: Published
    Description: 16-31
    Description: 5V. Processi eruttivi e post-eruttivi
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 30
    Publication Date: 2022-06-09
    Description: A 3D crustal density model for Egypt was compiled. It is constrained by available deep seismic refraction, receiver functions analysis, borehole, and geological data. In Egypt, seismic data are sparsely and irregularly distributed. Consequently, we developed the crustal thickness model by integrating seismic and gravity data. Satellite gravity data was inverted to build an initial model, which was followed by a detailed 3D forward gravity modelling. The initial crustal thickness is determined by applying seismically constrained non-linear inversion, based on the modified Bott's method and Tikhonov regularization assuming spherical Earth approximation. Moreover, the gravity inversion-based Moho depth estimates are in good agreement with results of seismic studies and are exploited for the 3D forward modelling. Crustal thicknesses range from 25 to 30 km along the rifted margins of the Red Sea, which thin toward the Mediterranean Sea. Thicknesses in southern Egypt reach values between 35 and 40 km. A maximum crustal thickness of 45 km is found in the southwestern part of Egypt. Within the Sinai Peninsula, the thickness varies from the shallow southern edge (∼ 31 km) and increases toward the North (∼ 36 km). Our model revealed a thick lower crust beneath the southern part of Egypt, which can be associated with crustal modification that occurred during the collision of East Gondwana and the Saharan Metacraton along the Keraf suture zone during the final assembly of Gondwana in the Neoproterozoic. Finally, the isostatic implications of the differences between the seismic and gravity-derived Mohos are thoroughly discussed. In conclusion, the developed 3D crustal thickness model provides high-resolution Moho depth estimates that closely resembles the major geological and tectonic features. Also, the existing correlation between the topography, Bouguer anomalies, and Moho depths indicates that the investigated area is close to its isostatic equilibrium.
    Description: Published
    Description: 52-67
    Description: 2TR. Ricostruzione e modellazione della struttura crostale
    Description: JCR Journal
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 31
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    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-05
    Description: The differential distribution of productivity in reservoirs has consequences for the fish assemblage, influencing spatially in its distribution, along a longitudinal gradient. Following the hypothesis that the spatiotemporal dynamics of chlorophyll a and turbidity influence the distribution of the fish assemblage in the Sobradinho reservoir, BA, three predictions were tested: i) Whether the spatiotemporal variations of these variables, determined by digital processing of remote sensing images, follow the spatial zoning pattern described in the literature, for large reservoirs; ii) Whether with the increase in distance, in kilometers, from the collection points to the dam, there is an increase in the total abundance of fish; and iii) If, with the increase in productivity, represented by higher concentrations of chlorophyll a and turbidity, there is an increase in the abundance of fish (total or by trophic guild). The sampling was distributed in five periods, between April 2008 and July 2009, with at least one collection being carried out in each zone of the reservoir, fluvial, transition and lake, in each period. Bands 2 and 3 of scenes from the Landsat-5 satellite were selected, in which the chosen limnological variables show their peak of reflection. With the values of the collections in situ and the reflectance of the scenes, an interpolation was performed and, later, thematic maps of each of the variables were elaborated. The chlorophyll a and turbidity values of the ichthyofauna collection points were extracted from the interpolations. To analyze the existence of the longitudinal gradient, Spearman correlation analyses were performed between the value of the limnological variables and the distance from the collection point to the dam, obtained by extracting a longitudinal profile of the reservoir. To search for associations between limnological variables and ichthyofauna, Spearman's correlation analyses were performed with the value of the variables and total abundance and by trophic guilds. Also, the analyses were carried out dividing the collection points according to the reservoir area and the rainfall regime (dry and full). The Sobradinho reservoir showed a pattern of productivity zoning consistent with the typical pattern of large reservoirs. This zoning had a strong association with the distribution of fish abundance in the Sobradinho reservoir. There was an association between the abundance of fish in the lake area and the seasonal increase in productivity, with a remarkable decrease in abundance during the dry months and an increase in abundance during the floods. However, in the river zone, excess turbidity acted as a limiting factor. High values of this variable, also showing a greater flow of water, may have favored the dispersion of organisms to places of lesser environmental stress, reducing the abundance of fish in this region during floods. However, in general, the fluvial zone showed the highest abundances, exhibiting the well-known fluvial〉 transition〉 lacustrine pattern. The presence of favorable characteristics in the river zone, such as seasonal flooding and greater environmental heterogeneity, may have contributed to this result.
    Description: A distribuição diferencial da produtividade em reservatórios apresenta consequências sobre a assembleia de peixes, influenciando espacialmente na sua distribuição, ao longo de um gradiente longitudinal. Seguindo a hipótese de que as dinâmicas espaço-temporais de clorofila a e turbidez têm influência na distribuição da assembleia de peixes no reservatório de Sobradinho, BA, foram testadas três predições: i) Se as variações espaço-temporais destas variáveis, determinadas por processamento digital de imagens de sensoriamento remoto, seguem o padrão espacial de zonação descrito na literatura, para grandes reservatórios; ii) Se com o aumento da distância, em quilômetros, dos pontos de coleta em relação à barragem há incremento na abundância total de peixes; e iii) Se com o aumento da produtividade, representada por maiores concentrações de clorofila a e turbidez, há incremento na abundância de peixes (total ou por guilda trófica). A amostragem foi distribuída em cinco períodos, entre abril de 2008 e julho de 2009, sendo realizada pelo menos uma coleta em cada zona do reservatório, fluvial, transição e lacustre, em cada período. Selecionou-se as bandas 2 e 3 de cenas do satélite Landsat-5, nas quais as variáveis limnológicas escolhidas apresentam seu pico de reflexão. Com os valores das coletas in situ e a reflectância das cenas foi realizada uma interpolação e, posteriormente elaborou-se mapas temáticos de cada uma das variáveis. Os valores de clorofila a e turbidez dos pontos de coleta da ictiofauna foram extraídos das interpolações. Para analisar a existência do gradiente longitudinal, realizou-se análises de correlação de Spearman entre o valor das variáveis limnológicas e a distância do ponto de coleta em relação à barragem, obtidos através da extração de um perfil longitudinal do reservatório. Para buscar associações entre as variáveis limnológicas e a ictiofauna realizou-se análises de correlação de Spearman com o valor das variáveis e abundância total e por guilda trófica. Também, efetuou-se as análises dividindo os pontos de coleta de acordo com a zona do reservatório e com o regime pluviométrico (seca e cheia). O reservatório de Sobradinho apresentou um padrão de zonação de produtividade condizente com o padrão típico de grandes reservatórios. Esta zonação teve forte associação com a distribuição da abundância de peixes no reservatório de Sobradinho. Foi evidenciada uma associação entre a abundância de peixes da zona lacustre e o incremento sazonal da produtividade, sendo notável a diminuição da abundância durante os meses secos e o incremento desta durante as cheias. No entanto, na zona fluvial, o excesso de turbidez agiu como um fator limitante. Valores altos dessa variável, evidenciando também maior fluxo d’água, podem ter favorecido a dispersão dos organismos para locais de menor stress ambiental, diminuindo a abundância de peixes nesta região durante as cheias. Entretanto, em geral, a zona fluvial apresentou as maiores abundâncias, exibindo o conhecido padrão fluvial 〉 transição 〉 lacustre. A presença de características favoráveis na zona fluvial, como inundação sazonal e maior heterogeneidade ambiental, podem ter contribuido para esse resultado.
    Description: Masters
    Keywords: Ictiofauna de água doce ; Sensoriamento remoto orbital (SR) ; Reservatórios ; Variáveis limnológicas ; Gradiente longitudinal ; ASFA_2015::I::Ichthyofauna ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::R::Reservoirs (water) ; ASFA_2015::V::Variability ; ASFA_2015::L::Limnology ; ASFA_2015::R::Remote sensing
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 45pp.
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  • 32
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-05
    Description: The use of multimetric indices (MMIs) to assess ecological conditions in aquatic environments has been applied globally. These indices are practical tools that incorporate various biotic metrics at different levels of biological organization. However, criticism has been directed to the use of MMIs, especially regarding the methodological criteria applied in the process such as related to metric selection and scoring and identification of reference conditions that consider all sources of ecological integrity disturbance. A review of the scientific literature was carried out to evaluate processes of creation and validation of MMIs worldwide. The criteria used by scientists to identify reference conditions, metric selection and scoring, the main metrics globally used in MMIs, and the challenges in applying these indices were verified. It was identified whether nonnative species have been considered as a source of degradation of ecological integrity in the MMIs application. The results indicated that there are no common criteria for determining reference conditions, for metric selection and scoring, which makes it difficult to compare different programs and regions, and to develop or improve future MMIs. The results showed that metrics related to species richness were most frequently used in MMIs applied worldwide, thus, it represents a consistent response pattern in the assessment of ecological conditions. The results also indicate that differentiating natural variability from anthropogenic impacts was evidenced as the major challenge in the MMIs creation and application. The review of the scientific literature indicated that biological invasions are neglected in ecological integrity assessments, as nonnative species are rarely considered as a disturbing factor in identifying reference conditions and species origin metrics are not widely used in MMIs. The results presented in this review may promote the advancement and improvement of MMIs as bioassessment tools.
    Description: O uso de índices multimétricos (MMIs) para avaliação das condições ecológicas em ambientes aquáticos tem sido aplicado globalmente. Estes índices são ferramentas práticas que incorporam várias métricas bióticas em diferentes níveis de organização biológica. No entanto, críticas têm sido endereçadas ao uso de MMIs, especialmente em relação aos critérios metodológicos empregados no processo, como a seleção e pontuação de métricas e identificação de condições de referência que considerem todas as fontes de perturbação da integridade ecológica. Efetuou-se uma revisão de literatura científica a fim de avaliar processos de criação e validação de MMIs em todo o mundo. Verificou-se os critérios usados pelos cientistas para identificação de condições de referência, seleção e pontuação de métricas, as principais métricas usadas globalmente nos MMIs e os desafios na aplicação desses índices. Foi verificado se espécies não nativas têm sido consideradas como fonte de degradação da integridade ecológica na aplicação de MMIs. Os resultados obtidos indicaram que não existem critérios comuns para determinação das condições de referência e seleção e pontuação de métricas, o que dificulta a avaliação comparável entre diferentes programas e regiões e desenvolvimento ou aprimoramento de futuros MMIs. Os resultados mostraram que as métricas de riqueza de espécies foram as mais frequentemente usadas nos MMIs aplicados em todo o mundo, representando, assim, um padrão de resposta consistente na avaliação das condições ecológicas. Os resultados obtidos também sugerem que diferenciar a variabilidade natural dos impactos antropogênicos foi evidenciado como o maior desafio na criação e aplicação de MMIs. A revisão da literatura científica indicou que invasões biológicas são negligenciadas em avaliações de integridade ecológica, pois espécies não nativas são raramente consideradas como fator de perturbação na identificação de condições de referência e métricas de origem das espécies não são amplamente empregadas nos MMIs. Os resultados apresentados nessa revisão podem promover o avanço e aprimoramento dos MMIs como ferramentas de bioavaliação.
    Description: PhD
    Keywords: Ecossistemas de água doce ; Biomonitoramento ; Invasões biológicas ; Indicadores biológicos ; Índice de Integridade Biótica ; Seleção de métricas ; Integridade ecológica ; Indicadores ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::E::Ecosystems ; ASFA_2015::B::Bioindicators ; ASFA_2015::I::Indigenous species
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 92pp.
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  • 33
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-02
    Description: Changes in the biodiversity of parasites communities can be used as indicators of the healthy ecosystem as they reflect environmental impacts through their responses to changes in habitat. Thus, the aim of the study was to investigate the potential use of parasites from Geophagus brasiliensis as bioindicators of environmental changes. Three sample points were determined of rio Iguaçu with different degrees of environmental impact. Among 69 specimes analyzed of G. brasiliensis, 32 (46.3%) were parasitized by at least one parasite. A total of 56 specimens of endoparasites belonging to the phylum Nematoda were collected. The abundance of nematode species was significantly higher in fishes collected in point 3 (Kruskal-Wallis2;69 = 8.62; p = 0.01) and species composition between points were significantly different (F = 6.95, p = 0.002). There was no significant difference in relative condition factor (Kn) of G. brasilienses between the points (F2;66 = 2.54; p = 0.08) there was no correlation in Kn and abundance of nematodes (rs = 0.1; p = 0.4). The lower abundance of nematodes was observed in point 1 (critically degraded), due to this environment showing changes in abiotic factors, represented in the relatively high values of conductivity and phosphorus when compared with points 2 and 3 (moderately degraded).The results obtained in the present study indicate that the parasitic community of G. brasiliensis is characterized by low diversity in polluted locations, thus the absence of certain species of parasites and the occurrence of nematode species demonstrated a variation in response to the pollution gradient.
    Description: Alterações na biodiversidade de comunidades parasitárias são utilizadas como indicadoras da saúde de sistemas ecológicos, pois refletem impactos ambientais mediante suas respostas às alterações no habitat. Investigou-se o potencial uso de nematoides de Geophagus brasiliensis como indicadores de alterações ambientais mediante o registro de sua presença e ausência. Foram determinados três pontos amostrais no rio Iguaçu com diferentes graus de impacto ambiental. Entre os 69 espécimes de G. brasiliensis analisados, 32 (46,3%) estavam parasitados por pelo menos um parasita. Um total de 56 espécimes de endoparasitas pertencentes a Nematoda foram coletados. A abundância de espécies de nematoides foi significativamente maior em peixes coletados no ponto 3 (Kruskal-Wallis 2;69 = 8,62; p = 0,01) e a composição das espécies entre os pontos foram significativamente diferentes (F = 6,95, p = 0,002). Não houve diferença significativa no fator de condição relativo (Kn) de G. brasiliensis entre os pontos (F2;66 = 2,54; p = 0,08) e na correlação entre o Kn e a abundância de nematoides (rs = 0,1; p = 0,4). A menor abundância foi verificada no ponto 1 (criticamente degradado), devido a esse ambiente apresentar alterações nos fatores abióticos e na estrutura biológica, quando comparado com os pontos 2 e 3 (moderadamente degradados). Os resultados obtidos indicam que a comunidade parasitária de G. brasiliensis é caracterizada por baixa diversidade em locais poluídos, portanto a ausência de certas espécies de parasitas e a ocorrência de espécies de nematoides demonstraram uma variação em resposta ao gradiente de poluição.
    Description: Masters
    Keywords: Peixes de água doce ; Ictioparasitologia de água doce ; Ecotoxicologia aquática ; Rio impactado ; Parasitas ; Ecotoxicologia ; Bioindicadores ; ASFA_2015::F::Freshwater fish ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::P::Parasites ; ASFA_2015::E::Ecotoxicology ; ASFA_2015::B::Bioindicators ; ASFA_2015::I::Impacts
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 26pp.
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  • 34
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-02
    Description: Several studies have presented phylogeny of Geophagini based on morphological and molecular characters; however, neuroanatomical characters have not been explored for the tribe yet. Fish encephalon shows interspecific morphological variation, even in related groups, and can be used to build cladograms. The phylogeny of Geophagini is presented using the neuroanatomical characters mapped on a previous cladogram. This approach showed how the encephalon of Geophagini species have diversified among clades and how ecological features of some species can be related to changes (increase or decrease) of a particular structure. The morphological description of the encephalon of Geophagus sveni was also performed, with an illustration of the major encephalon structures and the origin of the cranial nerves, as well as a comparison of the morphometric differences between males and females.
    Description: Diversos estudos apresentaram a filogenia de Geophagini com base em caracteres morfológicos e moleculares, entretanto, caracteres neuroanatômicos ainda não foram explorados para a tribo. Os cérebros de peixes apresentam variação morfológica interespecífica, mesmo em grupos aparentados, podendo ser utilizados para construção de cladogramas. A filogenia de Geophagini é apresentada com a utilização dos caracteres neuroanatômicos mapeados sobre um cladograma prévio. Esta abordagem evidenciou como o encéfalo de Geophagini se diversificou entre os clados e como características ecológicas de cada espécie podem estar relacionados com modificações (aumento ou diminuição) de uma estrutura em particular. Foi realizada também a descrição morfológica do encéfalo de Geophagus sveni, com ilustração das principais estruturas do encéfalo e origem dos nervos cranianos, assim como a comparação das diferenças morfométricas entre machos e fêmeas.
    Description: Masters
    Keywords: Geophagini (Cichliformes: Cichlidae: Cichlinae) ; Filogenia ; Encéfalo ; Morfologia ; ASFA_2015::F::Freshwater fish ; ASFA_2015::P::Phylogeny ; ASFA_2015::M::Morphology (organisms) ; ASFA_2015::B::Brain ; ASFA_2015::A::Anatomical structures ; ASFA_2015::T::Taxonomy
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 137pp.
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  • 35
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-02
    Description: Biodiversity encompasses multiple aspects or facets changing in space and time. Before a loss of biodiversity in response to anthropogenic impacts it is of the utmost importance to determine what facets of biodiversity are altered and the determinants of such changes. By using information from species abundance, their evolutionary relatedness, and ecological traits we determine how the dissimilarity in composition of fish communities is influenced by temporal changes in land use and changes in environmental heterogeneity across space. In the first approach, we can see that changes in land use over time affected mainly the substitution of evolutionary lineages and functional traits. In the second approach, we find evidence of taxonomic and functional homogenization over time, likely following a decrease in diversity of traits related to habitat use. Furthermore, we found that ecological traits contributed differently to the changes in functional composition as well in their response to environmental heterogeneity. These results support recently evidence showing that anthropogenic impacts are driving changes in biological communities through a taxonomic and functional homogenization.
    Description: A biodiversidade está constituída por múltiplos aspectos ou facetas que mudam no espaço e tempo. Ante um cenário de perda de diversidade em resposta a impactos antropogênicos é urgente determinar quais aspectos da biodiversidade estão sendo alterados e os determinantes de tais mudanças. Usando informação de abundância de espécies, suas relações evolutivas e características ecológicas, determinamos como dissimilaridade da composição entre comunidades de peixes é influenciada por mudanças no uso da terra ao longo do tempo e mudanças da heterogeneidade ambiental no espaço. Na primeira abordagem, podemos ver que ao longo do tempo as mudanças no uso da terra afetam principalmente a substituição de linhagens evolutivas e características ecológicas. Na segunda abordagem, encontramos evidência de que as comunidades estão sendo homogeneizadas taxonômica e funcionalmente ao longo do tempo, provavelmente devido à perda de diversidade em características relacionadas ao uso de habitat. Ademais, encontramos que as características ecológicas contribuem de forma diferente para as mudanças na composição funcional e apresentam diferenças na resposta à heterogeneidade ambiental. Esses resultados suportam evidências de que impactos antropogênicos estão levando a mudanças nas comunidades biológicas, as quais estão tendendo a perder diversidade mediante homogeneização taxonômica e funcional
    Description: PhD
    Keywords: Peixes de água doce ; Comunidades, Ecologia de ; Impactos ambientais antropogênicos ; Mudanças espaciais e temporais ; Diversidades funcional e filogenética ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::L::Land use ; ASFA_2015::P::Phylogenetics ; ASFA_2015::F::Functional analysis ; ASFA_2015::E::Ecological diversity ; ASFA_2015::T::Temporal variations ; ASFA_2015::T::Taxonomy ; ASFA_2015::E::Environmental impact
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 89pp.
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  • 36
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-02
    Description: Different ecological processes (e.g., rescue effect, environmental filtering, limiting similarity and dispersal) shape the structure of ecological communities. These processes, which are related to the theories of metapopulation and metacommunities, guided this study. For this purpose, data from fish communities in streams in the Upper Araguaia river basin (Mato Grosso and the Goiás States, Brazil) were used. It was observed that the regional distribution of fish species was modelled according to niche attributes (position and breadth), body size, trophic position, and swimming capacity. The results indicated that average abundance, niche position and niche amplitude predict the regional distribution of the species. Taken together, these results suggest the importance of metapopulation dynamics and niche-based processes explaining the regional distribution of species in the studied system. At another time, it was tested whether the abundance of subordinate species (i.e., any species that are not dominant in a local community) was correlated with the functional distance between dominant and subordinate species. In the results, a negative relationship between these quantities and that the subordinate species had larger body sizes compared to the dominant species in the local communities. These results also suggest that species filtering is more important than the interspecific competition to explain the patterns of species abundance distribution. In this study, was analyzed the relative importance of local environmental, landscape and spatial variables in structuring fish communities in streams of “veredas” (small wetlands in the Cerrado). The local environmental variables, after controlling the effect of space, were clearly more important than those obtained at the landscape scale. In view of the observations, it is concluded that the use of landscape data, in studies seeking environmental correlates of local community structure, should not occur at the expense of obtaining local variables (mainly those related to the habitat structure). The results of the three investigations in this study shown the predominant role of local environmental filters in the structuring of the fish communities analyzed. Species with high niche amplitude tend to have wide regional distributions and small-bodied ones tend to be locally dominant.
    Description: Diversos processos ecológicos, tais como efeito resgate, filtragem ambiental, similaridade limitante e dispersão atuam na estruturação das comunidades. Esses processos, relacionados às teorias de metapopulação e metacomunidades, direcionaram este estudo. Para tanto, dados de comunidades de peixes em riachos do Alto da bacia do rio Araguaia (estados do Mato Grosso e Goiás, Brasil) foram utilizados. Foi observado que a distribuição regional das espécies de peixes em função de atributos do nicho (posição e amplitude), tamanho do corpo, posição trófica e capacidade natatória. Observou-se que apenas a abundância média, a posição de nicho e a amplitude de nicho predizem a distribuição regional das espécies. Em conjunto, esses resultados indicam a importância da dinâmica metapopulacional e de processos baseados no nicho para explicar a distribuição regional das espécies de peixes de riachos do Cerrado. Em outro momento, foi testado se a abundância de espécies subordinadas (i.e., quaisquer espécies que não são dominantes numa comunidade local) estava correlacionada com a distância funcional entre espécies dominantes e subordinadas. Nos resultados, encontrou-se uma relação negativa entre essas quantidades e que as espécies subordinadas apresentavam maiores tamanhos corpóreos em comparação com as espécies dominantes nas comunidades locais. Esses resultados mostram que a filtragem de espécies é mais importante que a competição interespecífica para explicar a distribuição da abundância entre as espécies. Neste estudo, foi analisada a importância relativa de variáveis ambientais locais, da paisagem e espaciais na estruturação de comunidades de peixes de riachos de veredas (pequenas áreas úmidas do Cerrado). As variáveis ambientais locais, após controlar o efeito do espaço, foram claramente mais importantes que aquelas obtidas na escala da paisagem. Diante das observações, conclui-se que a obtenção de dados de paisagem, em estudos que buscam variáveis ambientais relacionadas com a estruturação de comunidades locais, não deve ocorrer em detrimento da obtenção de variáveis locais (principalmente aquelas relacionadas com a estruturação dos habitats). Os resultados das três investigações deste estudo mostram o papel preponderante de filtros ambientais locais na estruturação das comunidades de peixes em riachos do Cerrado. Espécies de peixes com maiores amplitudes de nicho tendem a apresentar maiores distribuições regionais e espécies com menores tamanhos corpóreos tendem a ser localmente dominantes.
    Description: PhD
    Keywords: Peixes de riachos de cerrado ; Ecologia funcional ; Peixes de riachos de água doce ; Comunidades, Ecologia de ; Escala espaço-temporal ; Diversidade funcional ; Variáveis ambientais ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::S::Stream ecology ; ASFA_2015::F::Functional analysis ; ASFA_2015::N::Niches ; ASFA_2015::D::Dispersion ; ASFA_2015::A::Abundance ; ASFA_2015::F::Filters
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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  • 37
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-09-07
    Description: The diversity of aquatic macrophytes provides different local conditions, containing more microhabitat than homogeneous systems, thus supporting diverse biotic communities. Considering that the diversity of these plants can affect the invertebrate community and, consequently, the associated fish diet, this study assessed the influence of macrophyte diversity on the abundance, richness, and diversity of invertebrates, and the diet of Moenkhausia forestii. Fish, invertebrates, and macrophytes were sampled in macrophyte stands with different diversities, distributed along with a 14 km extension of the coastal region of Rio Baía (Upper Paraná River floodplain). The stands were separated into low, medium and high diversity, and they all had biomass that did not differ significantly. The invertebrates associated with the macrophytes and those consumed by M. forestii were identified and counted. Differences in abundance, richness, and diversity of invertebrates between levels of macrophyte diversity (low, medium and high) were tested using an ANOVA. Differences in the composition of the M. forestii diet were tested using a PERMANOVA, and feeding selectivity was calculated using the Ivlev index. Richness, diversity, and abundance of invertebrates were greater in high diversity macrophyte stands, however, for abundance, there was no significant difference between the levels of macrophyte diversity. The diet of M. forestii differed significantly between stands, and aquatic plants were the most used resource in low diversity. Invertebrates were dominant in high diversity, while aquatic plants and invertebrates were important in medium diversity of macrophytes. These results indicate that invertebrate communities were influenced by the diversity of macrophytes since richer and more diverse communities were also associated with more diverse stands of these plants. Changes observed in the diet of M. forestii were also associated with the diversity of macrophytes. In a scenario where involving changes in the attributes of these plants, and these stands become dominated by one or a few species of macrophytes, it is expected that this will reflect on other trophic levels, even at a local scale.
    Description: A diversidade de macrófitas aquáticas proporciona condições locais distintas, de modo a conter mais micro-habitat do que sistemas homogêneos, sustentando assim comunidades associadas diversas. Considerando que a diversidade destas plantas pode influenciar a comunidade de invertebrados e, consequentemente, a dieta de peixes associados, este estudo avaliou a influência da diversidade de macrófitas sobre a abundância, riqueza e diversidade de invertebrados, e sobre a dieta de Moenkhausia forestii. Peixes, invertebrados e macrófitas foram amostrados em bancos de macrófitas com diferentes diversidades, distribuídos ao longo de 14 km de extensão da região litorânea do rio Baía (planície de inundação do alto rio Paraná). Os bancos de macrófitas foram categorizados em diversidade baixa, média e alta, e todos apresentaram biomassa que não diferiram significativamente. Os invertebrados associados à macrófitas e os consumidos por M. forestii foram identificados e contados. Diferenças na abundância, riqueza e diversidade de invertebrados entre os níveis de diversidade de macrófitas (baixa, média e alta) foram testadas por uma ANOVA. Diferenças na composição da dieta de M. forestii entre os níveis de diversidade foram avaliadas por uma PERMANOVA. A riqueza, a diversidade e a abundância de invertebrados foram maiores em bancos de macrófitas com maior diversidade, porém para a abundância não houve diferença significativa entre os níveis de diversidade de macrófitas. A dieta de M. forestii diferiu significativamente entre os bancos, sendo que vegetal foi o recurso mais utilizado em baixa diversidade de macrófitas, invertebrado foi dominante em alta diversidade e vegetal e invertebrado foram importantes em média diversidade de macrófitas. Estes resultados indicam que as comunidades de invertebrados foram influenciadas pela diversidade de macrófitas, visto que comunidades mais ricas e diversas estiveram também associadas a bancos mais diversos destas plantas. As alterações constatadas na dieta de M. forestii também estiveram associadas à diversidade de macrófitas. A espécie passou de uma dieta onívora, em bancos de baixa diversidade, para uma dieta invertívora em bancos com alta diversidade de macrófitas. Assim, em um cenário onde haja mudanças nos atributos dessas plantas, e esses bancos passem a ser dominados por uma ou poucas espécies de macrófitas, é esperado que isso se reflita para os outros níveis tróficos, ainda que em uma escala local.
    Description: Masters
    Keywords: Macrófitas aquáticas ; Comunidades, Ecologia de ; Ecologia trófica ; Diversidade ; Peixes ; Alimentação ; Nicho ; Amplitude ; ASFA_2015::M::Macrophytes ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::E::Ecological diversity ; ASFA_2015::E::Ecology ; ASFA_2015::T::Trophic levels ; ASFA_2015::N::Niches ; ASFA_2015::C::Communities (ecological) ; ASFA_2015::I::Invertebrate zoology
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 32pp.
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  • 38
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-04
    Description: El Niño Southern Oscillation (ENSO) is a natural phenomenon that generates El Niño and La Niña events worldwide. Among the consequences caused by this climatic fluctuation, there are changes in the rainfall regime, which can trigger in times of extreme drought or extreme flood in freshwater environments, such as floodplains. The floodplain flood phases cause homogenization between the different environments, which also cause the homogenization of the fish assemblage in these floodplains. Among the rivers affected by ENSO is the Rio Paraná and the floodplain associated with its upper stretch, the upper Rio Paraná floodplain (UPRF). We aimed to study if El Niño phenomena change the functional diversity of fish in the floodplain between different environments, lakes and rivers. The results answered the hypotheses that: 1. El Niño events intensify floods in UPRF and, consequently, promote a functional homogenization of the fish assemblage; 2. Different functional guilds will be favored in times of El Niño or La Niña. The measurement of ENSO was obtained by the Oceanic Niño Index (ONI), while the hydrometric level of the upper Rio Paraná was obtained by daily measurement on a hydrometric ruler. The fish were collected with gillnets in different environments of the floodplain, lakes and rivers, being grouped in reproductive and trophic guilds, used to calculate indices of functional diversity. It was tested how ONI affects the hydrometric level of the upper Rio Paraná (Pearson's correlation); how ENSO affects the functional composition of floodplain fish (PCoA; PERMANOVA), as well as the effect of homogenization; which functional guilds are favored in El Niño or La Niña events and whether there is an additive effect of ONI and hydrometric level on the functional composition of the floodplain fish. The hydrometric level presented a positive correlation with ONI, indicating that El Niño events cause flooding in the upper Paraná River, while La Niña drought. The effect of El Niño's functional homogenization on fish was more visible in lakes, with rivers being less affected by ENSO, and floods were not intense enough to homogenize these two types of environment, this may be the same for other floodplains where ENSO acts in the same way. Fish with parental care and invertivores were favored in El Niño events, while herbivorous and piscivorous fish were favored in La Niña events. Migratory fish appears to respond one year after these climatic events, as they have a long-life cycle. The additive effect of ENSO and hydrometric level on the functional composition wasn’t found, because other regional and local factors can influence this interaction. However, even with these factors, the fish assemblage from the floodplain still responds to these climatic fluctuations, being more homogeneous in El Niño events than in La Niña events.
    Description: El Niño Oscilação Sul (El Niño Southern Oscillation – ENSO) é um fenômeno natural que gera eventos de El Niño e La Niña no mundo todo. Dentre as consequências causadas por essa oscilação climática, existem alterações no regime pluviométrico, que podem desencadear em épocas de extrema seca ou extrema cheia em ambientes de água doce, como as planícies de inundação. As fases de cheia de planícies de inundação causam uma homogeneização entre os diferentes ambientes, o que também causa a homogeneização da assembleia de peixes dessas planícies. Dentre os rios afetados por ENSO encontra-se o rio Paraná e a planície de inundação associada ao seu trecho superior, a planície de inundação do alto rio Paraná (PIARP). Estudou-se o fenômeno de El Niño e por meio da amostragem constatou-se mudanças na diversidade funcional dos peixes da planície de inundação entre diferentes ambientes, lagoas e rios. Os resultados responderam as hipóteses de que: 1. Eventos de El Niño intensifiquem cheias na PIARP e, consequentemente, provoquem uma homogeneização funcional da assembleia de peixes; 2. Diferentes guildas funcionais serão favorecidas em épocas de El Niño ou La Niña. Obteve-se a mensuração de ENSO pelo índice de ONI (Oceanic Niño Index), enquanto que o nível hidrométrico do alto rio Paraná foi obtido pela medição diária em uma régua hidrométrica. Os peixes foram coletados com redes de espera em diferentes ambientes da planície de inundação, lagoas e rios, sendo agrupados em guildas reprodutivas e alimentares, usados para calcular índices de diversidade funcional. Testou-se como o ONI afeta o nível hidrométrico do alto rio Paraná (correlação de Pearson); como o ENSO afeta a composição funcional dos peixes da planície de inundação (PCoA; PERMANOVA), bem como o efeito da homogeneização; quais guildas funcionais são favorecidas em eventos de El Niño ou La Niña e se há efeito aditivo de ONI e nível hidrométrico sobre a composição funcional dos peixes da planície. O nível hidrométrico apresentou correlação positiva com ONI, indicando que eventos de El Niño causam cheias no alto rio Paraná, enquanto La Niña, seca. O efeito da homogeneização funcional de El Niño sobre os peixes foi mais visível em lagoas, sendo que os rios foram menos afetados por ENSO, e as cheias não foram intensas o suficiente para homogeneizarem esses dois tipos de ambiente, podendo ser o mesmo para demais planícies de inundação onde ENSO age da mesma maneira. Peixes com cuidado parental e invertívoros foram favorecidos em épocas de El Niño, enquanto que, peixes herbívoros e piscívoros foram favorecidos em épocas de La Niña. Os peixes migradores aparentam responder um ano após esses eventos climáticos, por possuírem ciclo de vida longo. O efeito aditivo de ONI e nível hidrométrico sobre a composição funcional não foi encontrado, sendo que outros fatores regionais e locais podem influenciar nessa interação. Entretanto, mesmo com esses fatores a assembleia de peixes da planície de inundação ainda responde à essas oscilações climáticas, sendo mais homogênea em eventos de El Niño do que em eventos de La Niña.
    Description: Masters
    Keywords: Peixes de água doce, Assembleia de ; El Niño Oscilação Sul (ENSO) ; Diversidade e índices funcionais ; Mudanças climáticas ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::A::Assemblages ; ASFA_2015::D::Diversity index ; ASFA_2015::I::Impacts ; ASFA_2015::C::Climatic changes ; ASFA_2015::E::El Nino phenomena
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
    Format: 49pp.
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  • 39
    facet.materialart.
    Unknown
    Universidade Estadual de Maringá. Departamento de Biologia. Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais.
    Publication Date: 2022-07-04
    Description: We evaluated the effects of El Niño Southern Oscillation in the fish assemblages of the upper Paraná River floodplain. Specifically, we tested if: (i) reservoirs regulate ENSO effects on the hydrometric level in the rivers that compose the plain (Rio Paraná – intensely dammed and Rio Ivinhema – not dammed); (ii) ENSO events influence the structure of the fish assemblages of the study rivers; and that (iii) the hydrometric level and the ENSO events will act synergistically on the structure of the fish assemblage of the Rio Paraná and Rio Ivinhema. ENSO data was gathered at the National Oceanic and Atmospheric Administration (NOAA), using as proxy the “Oceanic Niño Index” (ONI). Water level data were gathered from the hydrological stations located in the sampled area. Fish samplings were carried out quarterly between the years 2000 and 2018. In general, ENSO events were correlated with the hydrometric level of the Rio Paraná and Rio Ivinhema, but with lower correlation for the Rio Paraná, probably due to the effects of dams upstream the plain. The fish assemblages of the Rio Paraná and Rio Ivinhema presented distinct structures, and the ENSO events appeared to influence this differentiation. Migratory species were negatively correlated with ONI, but the greatest abundances were found one year after the events of El Niño ("Lag" of one year). Higher values of the attributes of the fish assemblages were recorded for the Rio Ivinhema, in all events of ENSO (La Niña, Neutral and El Niño), probably because it presents more pristine conditions. The hydrometric level and the ENSO events act synergistically, but distinctively in the study rivers, which should be related to their degree of impacts. Thus, the influence of ENSO in the studied area is apparently minimized, especially in the Rio Paraná, due to the flow control imposed by dams located upstream of the area.
    Description: Avaliou-se os efeitos do El Niño Oscilação Sul (El Niño Southern Oscillation-ENSO) nas assembleias de peixes da planície de inundação do alto rio Paraná. Especificamente, foram testados: (i) os reservatórios minimizam os efeitos do ENSO no nível hidrométrico nos rios que compõem a planície (rios Paraná - intensamente represado e Ivinhema - não represado); (ii) os eventos ENSO influenciam a estrutura das assembleias de peixes dos rios estudados; (iii) o nível hidrométrico e os eventos ENSO atuam sinergicamente na estrutura da assembleia de peixes dos rios Paraná e Ivinhema. Coletaram-se os dados do ENSO no National Oceanic and Atmospheric Administration (NOAA), utilizando como proxy o "Índice Niño Oceânico" (Oceanic Niño Index-ONI). Os dados do nível hidrométrico foram coletados nas estações fluviométricas localizadas na área de estudo. As amostragens de peixes transcorreram trimestralmente entre os anos 2000 e 2018. Em geral, os eventos ENSO correlacionaram-se com o nível hidrométrico dos rios Paraná e Ivinhema, mas com menor correlação para o rio Paraná, provavelmente devido aos efeitos de barragens a montante da planície. As assembleias de peixes dos respectivos rios apresentaram estruturas distintas, e os eventos ENSO pareciam influenciar essa diferenciação. As espécies migradoras possuem correlação negativa com o ONI, mas com registro de maiores abundâncias um ano após os eventos de El Niño ("Lag" de um ano). Maiores valores de riqueza e abundancia total de espécies registradas para o rio Ivinhema, em todos os eventos do ENSO (La Niña, Neutro e El Niño), provavelmente por apresentar condições mais pristinas. O nível hidrométrico e os eventos do ENSO atuam sinergicamente, mas de maneira distinta nos rios estudados, o que deve estar relacionado ao grau de impacto antrópico. Assim, a influência do ENSO na área de estudo é aparentemente minimizada, principalmente no rio Paraná, devido ao controle de vazão imposto por barragens localizadas a montante da área.
    Description: Masters
    Keywords: Peixes de água doce, Assembleia de ; El Niño Southern Oscillation (ENSO) ; Diversidade taxonômica ; Mudanças climáticas ; ASFA_2015::F::Freshwater ecology ; ASFA_2015::F::Freshwater fish ; ASFA_2015::A::Assemblages ; ASFA_2015::E::El Nino phenomena ; ASFA_2015::C::Climatic changes ; ASFA_2015::T::Taxonomy
    Repository Name: AquaDocs
    Type: Thesis/Dissertation
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  • 40
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Rastetter, E. B., & Kwiatkowski, B. L. An approach to modeling resource optimization for substitutable and interdependent resources. Ecological Modelling, 425, (2020): 109033, doi:10.1016/j.ecolmodel.2020.109033.
    Description: We develop a hierarchical approach to modeling organism acclimation to changing availability of and requirements for substitutable and interdependent resources. Substitutable resources are resources that fill the same metabolic or stoichiometric need of the organism. Interdependent resources are resources whose acquisition or expenditure are tightly linked (e.g., light, CO2, and water in photosynthesis and associated transpiration). We illustrate the approach by simulating the development of vegetation with four substitutable sources of N that differ only in the cost of their uptake and assimilation. As the vegetation develops, it uses the least expensive N source first then uses progressively more expensive N sources as the less expensive sources are depleted. Transition among N sources is based on the marginal yield of N per unit effort expended, including effort expended to acquire C to cover the progressively higher uptake costs. We illustrate the approach to interdependent resources by simulating the expenditure of effort to acquire light energy, CO2, and water to drive photosynthesis in vegetation acclimated to different conditions of soil water, atmospheric vapor pressure deficit, CO2 concentration, and light levels. The approach is an improvement on the resource optimization used in the earlier Multiple Element Limitation (MEL) model.
    Description: This work was supported in part by the National Science Foundation under NSF grants 1651722, 1637459, 1603560, 1556772, 1841608. Any Opinions, findings and conclusions or recommendations expressed in this material are those of the authors and do not necessarily reflect those of the National Science Foundation.
    Keywords: Resource optimization ; Acclimation ; Substitutable resources ; Interdependent resources ; Resource limitation ; Multiple resource limitation
    Repository Name: Woods Hole Open Access Server
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  • 41
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Trathan, P. N., Wienecke, B., Barbraud, C., Jenouvrier, S., Kooyman, G., Le Bohec, C., Ainley, D. G., Ancel, A., Zitterbart, D. P., Chown, S. L., LaRue, M., Cristofari, R., Younger, J., Clucas, G., Bost, C., Brown, J. A., Gillett, H. J., & Fretwell, P. T. The emperor penguin - vulnerable to projected rates of warming and sea ice loss. Biological Conservation, 241, (2020): 108216, doi:10.1016/j.biocon.2019.108216.
    Description: We argue the need to improve climate change forecasting for ecology, and importantly, how to relate long-term projections to conservation. As an example, we discuss the need for effective management of one species, the emperor penguin, Aptenodytes forsteri. This species is unique amongst birds in that its breeding habit is critically dependent upon seasonal fast ice. Here, we review its vulnerability to ongoing and projected climate change, given that sea ice is susceptible to changes in winds and temperatures. We consider published projections of future emperor penguin population status in response to changing environments. Furthermore, we evaluate the current IUCN Red List status for the species, and recommend that its status be changed to Vulnerable, based on different modelling projections of population decrease of ≥50% over the current century, and the specific traits of the species. We conclude that current conservation measures are inadequate to protect the species under future projected scenarios. Only a reduction in anthropogenic greenhouse gas emissions will reduce threats to the emperor penguin from altered wind regimes, rising temperatures and melting sea ice; until such time, other conservation actions are necessary, including increased spatial protection at breeding sites and foraging locations. The designation of large-scale marine spatial protection across its range would benefit the species, particularly in areas that have a high probability of becoming future climate change refugia. We also recommend that the emperor penguin is listed by the Antarctic Treaty as an Antarctic Specially Protected Species, with development of a species Action Plan.
    Description: We thank Thomas J. Bracegirdle, Tony Phillips and Kevin Hughes for helpful comments on earlier drafts of this manuscript. PNT acknowledges the support of WWF-UK under GB095701 and SJ the support of NSF OPP1744794 and 1643901.
    Keywords: Antarctic ; Climate change ; Aptenodytes forsteri ; IUCN Red List threat status ; Protection ; Conservation
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  • 42
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Jin, D., Hoagland, P., & Buesseler, K. O. The value of scientific research on the ocean's biological carbon pump. Science of the Total Environment, 749, (2020): 141357, doi:10.1016/j.scitotenv.2020.141357.
    Description: The ocean's biological carbon pump (BCP) sequesters carbon from the surface to the deep ocean and seabed, constituting one of Earth's most valuable ecosystem services. Significant uncertainty exists surrounding the amounts and rates of organic carbon sequestered in the oceans, however. With improved understanding of BCP sequestration, especially its scale, world policymakers would be positioned to make more informed decisions regarding the mitigation of carbon emissions. Here, an analytical model of the economic effects of global carbon emissions—including scientific uncertainty about BCP sequestration—was developed to estimate the value of marine scientific research concerning sequestration. The discounted net economic benefit of a putative 20-year scientific research program to narrow the range of uncertainty around the amount of carbon sequestered in the ocean is on the order of $0.5 trillion (USD), depending upon the accuracy of predictions, the convexities of climate damage and economic output functions, and the initial range of uncertainty.
    Description: This research is supported by WHOI's Ocean Twilight Zone program which is part of the Audacious Project, a collaborative endeavor, housed at TED. DJ was also funded by National Oceanic and Atmospheric Administration (NOAA) Cooperative Institutes (CINAR) award NA14OAR4320158. KB was also funded by National Aeronautics and Space Administration (NASA) as part of the EXport Processes in the Ocean from RemoTe Sensing (EXPORTS) program award 80NSSC17K0555. We thank Ankur Shah for research assistance and three anonymous reviewers for their constructive suggestions.
    Keywords: Economic value of scientific research ; Value of information ; Biological carbon pump ; Carbon sequestration ; Ecosystem service ; Ocean twilight zone
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  • 43
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Brothers, L. L., Foster, D. S., Pendleton, E. A., & Baldwin, W. E. Seismic stratigraphic framework of the continental shelf offshore Delmarva, USA: implications for Mid-Atlantic Bight evolution since the Pliocene. Marine Geology, 428, : (2020)106287, doi:10.1016/j.margeo.2020.106287.
    Description: Understanding how past coastal systems have evolved is critical to predicting future coastal change. Using over 12,000 trackline kilometers of recently collected, co-located multi-channel boomer, sparker and chirp seismic reflection profile data integrated with previously collected borehole and vibracore data, we define the upper (〈 115 m below mean lower low water) seismic stratigraphic framework offshore of the Delmarva Peninsula, USA. Twelve seismic units and 11 regionally extensive unconformities (U1-U11) were mapped over 5900 km2 of North America's Mid-Atlantic continental shelf. We interpret U3, U7, U9, U11 as transgressive ravinement surfaces, while U1,2,4,5,6,8,10 are subaerial unconformities illustrating distinct periods of lower sea-level. Based on areal distribution, stratigraphic relationships and dating results (Carbon 14 and amino acid racemization estimates) from earlier vibracore and borehole studies, we interpret the infilled channels as late Neogene and Quaternary courses of the Susquehanna, Potomac, Rappahannock, York, James rivers and tributaries, and a broad flood plain. These findings indicate that the region's geologic framework is more complex than previously thought and that Pleistocene paleochannels are abundant in the Mid-Atlantic. This study synthesizes and correlates the findings of other Atlantic Margin studies and establishes a large-scale Quaternary framework that enables more detailed stratigraphic analysis in the future. Such work has implications for inner continental shelf systems tract evolution, the relationship between antecedent geology and modern coastal systems, assessments of eustacy, glacial isostatic adjustment, and other processes and forcings that play a role in passive margin evolution.
    Description: This work was supported by the U.S. Department of the Interior's Response to Hurricane Sandy.
    Keywords: N Atlantic ; Shelf (morphology and stratigraphy) ; Quaternary stratigraphy ; Paleochannels ; Geophysics (seismic)
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  • 44
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lin, H. T., Hsieh, C. C., Repeta, D. J., & Rappé, M. S. Sampling of basement fluids via circulation obviation retrofit kits (CORKs) for dissolved gases, fluid fixation at the seafloor, and the characterization of organic carbon. Methodsx, 7, (2020): 101033, doi:10.1016/j.mex.2020.101033.
    Description: The advanced instrumented GeoMICROBE sleds (Cowen et al., 2012) facilitate the collection of hydrothermal fluids and suspended particles in the subseafloor (basaltic) basement through Circulation Obviation Retrofit Kits (CORKs) installed within boreholes of the Integrated Ocean Drilling Program. The main components of the GeoMICROBE can be converted into a mobile pumping system (MPS) that is installed on the front basket of a submersible or remotely-operated-vehicle (ROV). Here, we provide details of a hydrothermal fluid-trap used on the MPS, through which a gastight sampler can withdraw fluids. We also applied the MPS to demonstrate the value of fixing samples at the seafloor in order to determine redox-sensitive dissolved iron concentrations and speciation measurements. To make the best use of the GeoMICROBE sleds, we describe a miniature and mobile version of the GeoMICROBE sled, which permits rapid turn-over and is relatively easy for preparation and operation. Similar to GeoMICROBE sleds, the Mobile GeoMICROBE (MGM) is capable of collecting fluid samples, filtration of suspended particles, and extraction of organics. We validate this approach by demonstrating the seafloor extraction of hydrophobic organics from a large volume (247L) of hydrothermal fluids. • We describe the design of a hydrothermal fluid-trap for use with a gastight sampler, as well as the use of seafloor fixation, through ROV- or submersible assisted mobile pumping systems. • We describe the design of a Mobile GeoMICROBE (MGM) that enhances large volume hydrothermal fluid sampling, suspended particle filtration, and organic matter extraction on the seafloor. • We provide an example of organic matter extracted and characterized from hydrothermal fluids via a MGM.
    Description: We dedicate this work to Dr. James P. Cowen, who had envisioned and constructed the integrated instrumentation, GeoMICROBE, to monitor the sub-basement biosphere. We thank the chief scientists, captains, crews, and science teams on board R/V Atlantis cruises AT15-35, AT15-51, AT15-66, AT18-07, MSM20-5, AT26-03, and AT26-18, and the pilots and crews of ROV Jason II and HOV Alvin. We thank our student assistants, Natalie Hamada, Kathryn Hu, Ryan Matzumoto, Everette Omori, and Fan-Chieh Chuang. This work was supported by the National Science Foundation-Microbial Observatory Project (NSF-MCB06-04014 to J. P. Cowen), Center for Dark Energy Biosphere Investigations (C-DEBI; NSF award OCE-0939564 to M. S. Rappé), NSF award OCE-1260723 (to M. S. Rappé), and the Ministry of Science and Technology of Taiwan award (MOST 105-2119-M-002-034, MOST 107-2611-M-002-002, MOST 108-2611-M-002-006, and MOST109-2611-M-002-008 to H.-T. Lin). Ministry of Education (MOE) Republic of China (Taiwan) 109L892601 to H.-T. Lin. NSF award OCE-1634080 (to D. J. Repeta), the Simons Foundation-Simons Collaboration on Ocean Processes and Ecology (SCOPE) award 329108 (to D. J. Repeta), the Gordon and Betty Moore Foundation award 6000 (to D. J. Repeta). This paper is SOEST contribution number 11121, HIMB contribution 1804 and C-DEBI contribution number 543.
    Keywords: GeoMICROBE ; Hydrothermal fluid ; Crustal fluid ; Mobile pumping system ; Helium ; Methane ; Dissolved organic matter ; Extraction and preconcentration ; Deep subseafloor
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  • 45
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Arenas Gomez, C. M., Woodcock, M. R., Smith, J. J., Voss, S. R., & Delgado, J. P. A de novo reference transcriptome for Bolitoglossa vallecula, an Andean mountain salamander in Colombia. Data in Brief, 29, (2020): 105256, doi:10.1016/j.dib.2020.105256.
    Description: The amphibian order Caudata, contains several important model species for biological research. However, there is need to generate transcriptome data from representative species of the primary salamander families. Here we describe a de novo reference transcriptome for a terrestrial salamander, Bolitoglossa vallecula (Caudata: Plethodontidae). We employed paired-end (PE) illumina RNA sequencing to assemble a de novo reference transcriptome for B. vallecula. Assembled transcripts were compared against sequences from other vertebrate taxa to identify orthologous genes, and compared to the transcriptome of a close plethodontid relative (Bolitoglossa ramosi) to identify commonly expressed genes in the skin. This dataset should be useful to future comparative studies aimed at understanding important biological process, such as immunity, wound healing, and the production of antimicrobial compounds.
    Description: This work was funded by a research grant from COLCIENCIAS 569 (GRANT 027-2103) and CODI (Programa Sostenibilidad) 2013–2014 of the University of Antioquia. A PhD fellowship to the first author, Claudia Arenas was funded by the COLCIENCIAS 567 Grant. We thank the lab of Juan Fernando Alzate from the University of Antioquia for their help in developing our bioinformatic methodological approach. We thank Andrea Gómez and Melisa Hincapie for their help in animal collection and husbandry.
    Keywords: Bolitoglossa ; Plethodontid ; Salamanders ; Skin ; Transcriptomics
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  • 46
    Publication Date: 2022-05-26
    Description: Author Posting. © National Academy of Sciences, 2020. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 117(26), (2020): 14618-14621, doi:10.1073/pnas.2008009117.
    Description: Plastic pollution is one of the most visible and complex environmental issues today. Interested and concerned parties include researchers, governmental agencies, nongovernmental organizations, industry, media, and the general public. One key assumption behind the issue and the public outcry is that plastics last indefinitely in the environment, resulting in chronic exposure that harms animals and humans. But the data supporting this assumption are scant.
    Description: We thank Briana Prado, Cassia Armstrong, and Anna Walsh for their help with the review, Kenneth Kostel, Katie Linehan, Daniel Ward, and Rose Cory for feedback on an earlier version of this piece, John Furfey for assistance with tracking down the original sources of the environmental lifetime estimates, and Natalie Reiner for help with Fig. 1. We acknowledge financial support from Woods Hole Oceanographic Institution (Woods Hole, MA) and the Seaver Institute (Los Angeles, CA).
    Description: 2020-12-10
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  • 47
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Li, Y., Stumpf, R. P., McGillicuddy, D. J.,Jr, & He, R. Dynamics of an intense Alexandrium catenella red tide in the Gulf of Maine: satellite observations and numerical modeling. Harmful Algae, 99, (2020): 101927, doi:10.1016/j.hal.2020.101927.
    Description: In July 2009, an unusually intense bloom of the toxic dinoflagellate Alexandrium catenella occurred in the Gulf of Maine. The bloom reached high concentrations (from hundreds of thousands to one million cells L−1) that discolored the water and exceeded normal bloom concentrations by a factor of 1000. Using Medium Resolution Imaging Spectrometer (MERIS) imagery processed to target chlorophyll concentrations (〉2 µg L−1), patches of intense A. catenella concentration were identified that were consistent with the highly localized cell concentrations observed from ship surveys. The bloom patches were generally aligned with the edge of coastal waters with high-absorption. Dense bloom patches moved onshore in response to a downwelling event, persisted for approximately one week, then dispersed rapidly over a few days and did not reappear. Coupled physical-biological model simulations showed that wind forcing was an important factor in transporting cells onshore. Upward swimming behavior facilitated the horizontal cell aggregation, increasing the simulated maximum depth-integrated cell concentration by up to a factor of 40. Vertical convergence of cells, due to active swimming of A. catenella from the subsurface to the top layer, could explain the additional 25-fold intensification (25 × 40=1000-fold) needed to reach the bloom concentrations that discolored the water. A model simulation that considered upward swimming overestimated cell concentrations downstream of the intense aggregation. This discrepancy between model and observed concentrations suggested a loss of cells from the water column at a time that corresponded to the start of encystment. These results indicated that the joint effect of upward swimming, horizontal convergence, and wind-driven flow contributed to the red water event, which might have promoted the sexual reproduction event that preceded the encystment process.
    Description: DJM gratefully acknowledges support of the Woods Hole Center for Oceans and Human Health, funded jointly by the National Science Foundation (OCE-1314642 and OCE-1840381) the National Institute of Environmental Health Sciences (P01ES021923–01 and P01 ES028938–01). RH acknowledges support made possible by NOAA grant NA15NOS4780196 and NA16NOS0120028.
    Keywords: Red water ; Bloom patches ; Cell accumulation ; Coastal upwelling ; Upward swimming
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  • 48
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kantha, L., Weller, R. A., Farrar, J. T., Rahaman, H., & Jampana, V. A note on modeling mixing in the upper layers of the Bay of Bengal: importance of water type, water column structure and precipitation. Deep-Sea Research Part II-Topical Studies in Oceanography, 168, (2019): 104643. doi: 10.1016/j.dsr2.2019.104643.
    Description: Turbulent mixing in the upper layers of the northern Bay of Bengal is affected by a shallow layer overlying the saline waters of the Bay, which results from the huge influx of freshwater from major rivers draining the Indian subcontinent and from rainfall over the Bay during the summer monsoon. The resulting halocline inhibits wind-driven mixing in the upper layers. The brackish layer also alters the optical properties of the water column. Air-sea interaction in the Bay is expected to play a significant role in the intraseasonal variability of summer monsoons over the Indian subcontinent, and as such the sea surface temperature (SST) changes during the summer monsoon are of considerable scientific and societal importance. In this study, data from the heavily instrumented Woods Hole Oceanographic Institution (WHOI) mooring, deployed at 18oN, 89.5oE in the northern Bay from December 2014 to January 2016, are used to drive a one-dimensional mixing model, based on second moment closure model of turbulence, to explore the intra-annual variability in the upper layers. The model results highlight the importance of the optical properties of the upper layers (and hence the penetration of solar insolation in the water column), as well as the temperature and salinity in the upper layers prescribed at the start of the model simulation, in determining the SST in the Bay during the summer monsoon. The heavy rainfall during the summer monsoon also plays an important role. The interseasonal and intraseasonal variability in the upper layers of the Bay are contrasted with those in the Arabian Sea, by the use of the same model but driven by data from an earlier deployment of a WHOI mooring in the Arabian Sea at 15.5 oN, 61.5 oE from December 1994 to December 1995.
    Description: LK was supported by U.S. Office of Naval Research (ONR) MISO/BoB DRI under grant number N00014-17-1-2716. RW and JTF were supported by ONR Grants N00014-13-1-0453 and N00014-17-1-2880, and the WHOI mooring was funded by Grant N00014-13-1-0453. RW was supported by ONR for the 1994–1995 deployment of the surface mooring in the Arabian Sea. HR and VJ wish to thank Dr. SSC Shenoi, the Director of INCOIS and Dr. M Ravichandran, Director, NCPOR for the encouragement and support to carry out this study. This work was supported by the Ministry of Earth Sciences (MoES), Govt. of India. This is also INCOIS Contribution number 349.
    Keywords: Bay of Bengal ; Arabian sea ; Mixing in the upper layers ; Second moment closure ; Turbulence ; WHOI mooring ; OMNI mooring ; Water type ; Solar insolation ; Precipitation
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  • 49
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Schwing, F. B., Sissenwine, M. J., Batchelder, H., Dam, H. G., Gomez-Gutierrez, J., Keister, J. E., Liu, H., & Peterson, J. O. William (Bill) Peterson's contributions to ocean science, management, and policy. Progress in Oceanography, 182, (2020): 102241, doi:10.1016/j.pocean.2019.102241.
    Description: In addition to being an esteemed marine ecologist and oceanographer, William T. (Bill) Peterson was a dedicated public servant, a leader in the ocean science community, and a mentor to a generation of scientists. Bill recognized the importance of applied science and the need for integrated “big science” programs to advance our understanding of ecosystems and to guide their management. As the first US GLOBEC program manager, he was pivotal in transitioning the concept of understanding how climate change impacts marine ecosystems to an operational national research program. The scientific insight and knowledge generated by US GLOBEC informed and advanced the ecosystem-based management approaches now being implemented for fishery management in the US. Bill held significant leadership roles in numerous international efforts to understand global and regional ecological processes, and organized and chaired a number of influential scientific conferences and their proceedings. He was passionate about working with and training young researchers. Bill’s academic affiliations, notably at Stony Brook and Oregon State Universities, enabled him to advise, train, and mentor a host of students, post-doctoral researchers, and laboratory technicians. Under his collegial guidance they became critical independent thinkers and diligent investigators. His former students and colleagues carry on Bill Peterson’s legacy of research that helps us understand marine ecosystems and informs more effective resource stewardship and conservation.
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  • 50
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in McCollom, T. M., Klein, F., Moskowitz, B., Berquo, T. S., Bach, W., & Templeton, A. S. Hydrogen generation and iron partitioning during experimental serpentinization of an olivine-pyroxene mixture. Geochimica Et Cosmochimica Acta, 282, (2020): 55-75, doi:10.1016/j.gca.2020.05.016.
    Description: A series of laboratory experiments was conducted to investigate serpentinization of olivine–pyroxene mixtures at 230 °C, with the objective of evaluating the effect of mixed compositions on Fe partitioning among product minerals, H2 generation, and reaction rates. An initial experiment reacted a mixture of 86 wt.% olivine and 14 wt.% orthopyroxene (Opx) with the same initial grain size for 387 days. The experiment resulted in extensive reaction (∼53% conversion), and solids recovered at termination of the experiment were dominated by Fe-bearing chrysotile and relict olivine along with minor brucite and magnetite. Only limited amounts of H2 were generated during the first ∼100 days of the experiment, but the rate of H2 generation then increased sharply coincident with an increase in pH from mildly alkaline to strongly alkaline conditions. Two shorter term experiments with the same reactants (26 and 113 days) produced a mixture of lizardite and talc that formed a thin coating on relict olivine and Opx grains, with virtually no generation of H2. Comparison of the results with reaction path models indicates that the Opx reacted about two times faster than olivine, which contrasts with some previous studies that suggested olivine should react more rapidly than Opx at the experimental conditions. The models also indicate that the long-term experiment transitioned from producing serpentine ± talc early in the early stages to precipitation of serpentine plus magnetite, with brucite beginning to precipitate only late in the experiment as Opx was depleted. The results indicate that overall reaction of olivine and Opx was initially relatively slow, but reaction rates accelerated substantially when the pH transitioned to strongly alkaline conditions. Serpentine and brucite precipitated from the olivine-Opx mixture had higher Fe contents than observed in olivine-only experiments at mildly alkaline pH, but had comparable Fe contents to reaction of olivine at strongly alkaline pH implying that higher pH may favor greater partitioning of Fe into serpentine and brucite and less into magnetite. Despite the presence of brucite, dissolved silica activities during the long-term olivine-Opx experiment maintained levels well above serpentine-brucite equilibrium. Instead, silica activities converged on levels close to metastable equilibrium between brucite and olivine. It is proposed that silica levels during the experiment may have been regulated by exchange of SiO2 between the fluid and a silica-depleted, brucite-like surface layer on dissolving olivine.
    Description: This research was supported by the U. S. National Science Foundation Marine Geology and Geophysics program through grant NSF-OCE 0927744 and by the NASA Astrobiology Institute through Cooperative Agreement NNA15BB02A. Additional support to TMM from the Hanse Wissenschaftskolleg (Delmenhorst, Germany) at an early stage of this project is gratefully acknowledged. FK acknowledges support through Grant NSF-OCE 1427274. The IRM is supported by the Instruments and Facilities Program of the NSF Division of Earth Science. This is IRM contribution 1711. We very much appreciate the comments of Fabrice Brunet, Gleb Pokrovski and an anonymous reviewer that helped us refine our interpretations and improve communication of the results.
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  • 51
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Babbin, A. R., Buchwald, C., Morel, F. M. M., Wankel, S. D., & Ward, B. B. Nitrite oxidation exceeds reduction and fixed nitrogen loss in anoxic Pacific waters. Marine Chemistry, 224, (2020): 103814, doi:10.1016/j.marchem.2020.103814.
    Description: The diversity of nitrogen-based dissimilatory metabolisms in anoxic waters continues to increase with additional studies to the marine oxygen deficient zones (ODZs). Although the microbial oxidation of nitrite (NO2–) has been known for over a century, studies of the pathways and microbes involved have generally proceeded under the assumption that nitrite oxidation to nitrate requires dioxygen (O2). Anaerobic NO2– oxidation until now has been conclusively shown only for anammox bacteria, albeit only as a limited sink for NO2– in their metabolism compared to the NO2– reduced to N2. Here, using direct experimental techniques optimized for replicating in situ anoxic conditions, we show that NO2– oxidation is substantial, widespread, and consistent across the ODZs of the eastern tropical Pacific Ocean. Regardless of the specific oxidant, NO2– oxidation rates are up to an order of magnitude larger than simultaneous N2 production rates for which these zones are known, and cannot be explained by anammox rates alone. Higher rates of NO2– oxidation over reduction in anoxic waters are paradoxical but help to explain how anammox rates can be enhanced over denitrification in shallow anoxic waters (σθ 〈 26.4) at the edge of the ODZs but not within the ODZ core. Furthermore, nitrite oxidation may be the key to reconciliation of the perceived imbalance of the global fixed nitrogen loss budget.
    Description: This work was funded by National Science Foundation grants OCE–1029951 to B.B.W, BIO–1402109 to A.R.B., and OCE-1260373 to S.D.W. Additional financial support to A.R.B. was provided by Simons Foundation grant 622065 and the generous contributions of Dr. Bruce L. Heflinger.
    Keywords: Nitrogen cycling ; Oxygen deficient zones ; Nitrite oxidation ; Denitrification ; Anammox
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  • 52
    Publication Date: 2022-10-26
    Description: Author Posting. © National Academy of Sciences, 2020. This article is posted here by permission of National Academy of Sciences for personal use, not for redistribution. The definitive version was published in Proceedings of the National Academy of Sciences of the United States of America 117(25), (2020): 13983-13990, doi: 10.1073/pnas.1922190117.
    Description: The two dominant drivers of the global mean sea level (GMSL) variability at interannual timescales are steric changes due to changes in ocean heat content and barystatic changes due to the exchange of water mass between land and ocean. With Gravity Recovery and Climate Experiment (GRACE) satellites and Argo profiling floats, it has been possible to measure the relative steric and barystatic contributions to GMSL since 2004. While efforts to “close the GMSL budget” with satellite altimetry and other observing systems have been largely successful with regards to trends, the short time period covered by these records prohibits a full understanding of the drivers of interannual to decadal variability in GMSL. One particular area of focus is the link between variations in the El Niño−Southern Oscillation (ENSO) and GMSL. Recent literature disagrees on the relative importance of steric and barystatic contributions to interannual to decadal variability in GMSL. Here, we use a multivariate data analysis technique to estimate variability in barystatic and steric contributions to GMSL back to 1982. These independent estimates explain most of the observed interannual variability in satellite altimeter-measured GMSL. Both processes, which are highly correlated with ENSO variations, contribute about equally to observed interannual GMSL variability. A theoretical scaling analysis corroborates the observational results. The improved understanding of the origins of interannual variability in GMSL has important implications for our understanding of long-term trends in sea level, the hydrological cycle, and the planet’s radiation imbalance.
    Description: The research was carried out at JPL, California Institute of Technology, under a contract with NASA. This study was funded by NASA Grants NNX17AH35G (Ocean Surface Topography Science Team), 80NSSC17K0564, and 80NSSC17K0565 (NASA Sea Level Change Team). The efforts of J.T.F. in this work were also supported by NSF Award AGS-1419571, and by the Regional and Global Model Analysis component of the Earth and Environmental System Modeling Program of the US Department of Energy's Office of Biological & Environmental Research via National Science Foundation Grant IA 1844590. C.G.P. was supported by the J. Lamar Worzel Assistant Scientist Fund and the Penzance Endowed Fund in Support of Assistant Scientists at the Woods Hole Oceanographic Institution.
    Description: 2020-12-08
    Keywords: Sea level ; Climate variability ; Global mean sea level ; Satellite altimetry
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  • 53
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Gu, S., Liu, Z., Oppo, D. W., Lynch-Stieglitz, J., Jahn, A., Zhang, J., & Wu, L. Assessing the potential capability of reconstructing glacial Atlantic water masses and AMOC using multiple proxies in CESM. Earth and Planetary Science Letters, 541, (2020): 11629, doi:10.1016/j.epsl.2020.116294.
    Description: Reconstructing the Atlantic Meridional Overturning Circulation (AMOC) during the Last Glacial Maximum (LGM) is essential for understanding glacial-interglacial climate change and the carbon cycle. However, despite many previous studies, uncertainties remain regarding the glacial water mass distributions in the Atlantic and the AMOC intensity. Here we use an isotope enabled ocean model with multiple geotracers (δ 13 C,E Νd,231 Pa/ 230Th,δ 18 Ο and Δ 14 C) and idealized water tracers to study the potential constraints on LGM ocean circulation from multiple proxies. Our model suggests that the glacial Atlantic water mass distribution can be accurately constrained by the air-sea gas exchange signature of water masses (δ13 C AS), but E Nd might overestimate the North Atlantic Deep Water (NADW) percentage in the deep Atlantic probably because of the boundary source of Nd. A sensitivity experiment with an AMOC of similar geometry but much weaker strength suggests that the correct AMOC geometry is more important than the AMOC strength for simulating the observed glacial δ13 C AS and E Nd and distributions. The kinematic tracer 231Pa/230Th is sensitive to AMOC intensity, but the interpretation might be complicated by the AMOC geometry and AABW transport changes during the LGM. δ 18 Ο in the benthic foraminifera (δ 18 Οc) from the Florida Straits provides a consistent measure of the upper ocean boundary current in the model, which potentially provides an unambiguous method to reconstruct glacial AMOC intensity. Finally, we propose that the moderate difference between AMOC intensity at LGM and PD, if any, is caused by the competition of the responses to CO2 forcing and continental ice sheet forcing.
    Description: We thank two anonymous reviewers for their useful and constructive comments. We also thank Editor Dr Laura F. Robinson for handling the manuscript. This work is supported by National Science Foundation of China No. 41630527, US National Science Foundation (NSF) P2C2 projects (1401778, 1401802, and 1566432). We would like to acknowledge the high-performance computing support from Yellowstone (ark:/85065/d7wd3xhc) and Cheyenne (doi:10.5065/D6RX99HX) provided by NCAR's Computational and Information Systems Laboratory, sponsored by the National Science Foundation and from Center for High Performance Computing and System Simulation, Pilot National Laboratory for Marine Science and Technology (Qingdao). Data used to produce the results in this study can be obtained from HPSS at CISL: /home/sgu28/CTRACE_decadal or by contacting the authors.
    Keywords: Last Glacial Maximum ; AMOC ; Water mass ; Multi-proxy
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  • 54
    Publication Date: 2022-10-26
    Description: © The Author(s), [year]. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Broadley, M. W., Barry, P. H., Bekaert, D. V., Byrne, D. J., Caracausi, A., Ballentine, C. J., & Marty, B. Identification of chondritic krypton and xenon in Yellowstone gases and the timing of terrestrial volatile accretion. Proceedings of the National Academy of Sciences of the United States of America, 117 (25), (2020): 13997-14004, doi: 10.1073/pnas.2003907117.
    Description: Identifying the origin of noble gases in Earth’s mantle can provide crucial constraints on the source and timing of volatile (C, N, H2O, noble gases, etc.) delivery to Earth. It remains unclear whether the early Earth was able to directly capture and retain volatiles throughout accretion or whether it accreted anhydrously and subsequently acquired volatiles through later additions of chondritic material. Here, we report high-precision noble gas isotopic data from volcanic gases emanating from, in and around, the Yellowstone caldera (Wyoming, United States). We show that the He and Ne isotopic and elemental signatures of the Yellowstone gas requires an input from an undegassed mantle plume. Coupled with the distinct ratio of 129Xe to primordial Xe isotopes in Yellowstone compared with mid-ocean ridge basalt (MORB) samples, this confirms that the deep plume and shallow MORB mantles have remained distinct from one another for the majority of Earth’s history. Krypton and xenon isotopes in the Yellowstone mantle plume are found to be chondritic in origin, similar to the MORB source mantle. This is in contrast with the origin of neon in the mantle, which exhibits an isotopic dichotomy between solar plume and chondritic MORB mantle sources. The co-occurrence of solar and chondritic noble gases in the deep mantle is thought to reflect the heterogeneous nature of Earth’s volatile accretion during the lifetime of the protosolar nebula. It notably implies that the Earth was able to retain its chondritic volatiles since its earliest stages of accretion, and not only through late additions.
    Description: Samples were collected as part of Study YELL-08056: Xenon Anomalies in the Yellowstone Hotspot. We thank Annie Carlson and all of the rangers at the Yellowstone National Park for providing invaluable advice and help when collecting the samples. M.W.B., D.V.B., D.J.B., and B.M. were supported by the European Research Council (PHOTONIS Project Grant 695618). This work was partially supported by Grants G-2016-7206 and G-2017-9696 from the Alfred P. Sloan Foundation and the Deep Carbon Observatory (to P.H.B.) and UK National Environment Research Council Deep Volatile Grant NE/M000427/1 (to C.J.B.). We also thank Laurent Zimmerman for providing help with the analysis. Finally, we thank the editor for efficient handling of our manuscript and the two anonymous reviewers for their insightful comments. This is CRPG contribution 2998.
    Keywords: Origin of Earth’s volatiles ; Accretion ; Mantle plume ; Noble gases ; Yellowstone
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  • 55
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Sutherland, K. M., Wankel, S. D., & Hansel, C. M. Dark biological superoxide production as a significant flux and sink of marine dissolved oxygen. Proceedings of the National Academy of Sciences of the United States of America, 117(7), (2020): 3433-3439, doi:10.1073/pnas.1912313117.
    Description: The balance between sources and sinks of molecular oxygen in the oceans has greatly impacted the composition of Earth’s atmosphere since the evolution of oxygenic photosynthesis, thereby exerting key influence on Earth’s climate and the redox state of (sub)surface Earth. The canonical source and sink terms of the marine oxygen budget include photosynthesis, respiration, photorespiration, the Mehler reaction, and other smaller terms. However, recent advances in understanding cryptic oxygen cycling, namely the ubiquitous one-electron reduction of O2 to superoxide by microorganisms outside the cell, remains unexplored as a potential player in global oxygen dynamics. Here we show that dark extracellular superoxide production by marine microbes represents a previously unconsidered global oxygen flux and sink comparable in magnitude to other key terms. We estimate that extracellular superoxide production represents a gross oxygen sink comprising about a third of marine gross oxygen production, and a net oxygen sink amounting to 15 to 50% of that. We further demonstrate that this total marine dark extracellular superoxide flux is consistent with concentrations of superoxide in marine environments. These findings underscore prolific marine sources of reactive oxygen species and a complex and dynamic oxygen cycle in which oxygen consumption and corresponding carbon oxidation are not necessarily confined to cell membranes or exclusively related to respiration. This revised model of the marine oxygen cycle will ultimately allow for greater reconciliation among estimates of primary production and respiration and a greater mechanistic understanding of redox cycling in the ocean.
    Description: This work was supported by NASA Earth and Space Science Fellowship NNX15AR62H to K.M.S., NASA Exobiology grant NNX15AM04G to S.D.W. and C.M.H., and NSF Division of Ocean Sciences grant 1355720 to C.M.H. This research was further supported in part by Hanse-Wissenschaftskolleg Institute of Advanced Study fellowships to C.M.H. and S.D.W. We thank Danielle Hicks for assistance with figures and Community Earth Systems Model (CESM) Large Ensemble Project for the availability and use of its data product. The CESM project is primarily supported by the NSF.
    Keywords: Microbial superoxide ; Reactive oxygen species ; Marine dissolved oxygen
    Repository Name: Woods Hole Open Access Server
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  • 56
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Physics Letters B 294 (1992), S. 466-478 
    ISSN: 0370-2693
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Physics
    Type of Medium: Electronic Resource
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  • 57
    Electronic Resource
    Electronic Resource
    Amsterdam : Elsevier
    Physics Letters B 317 (1993), S. 474-484 
    ISSN: 0370-2693
    Source: Elsevier Journal Backfiles on ScienceDirect 1907 - 2002
    Topics: Physics
    Type of Medium: Electronic Resource
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  • 58
    Publication Date: 2022-01-07
    Description: The Q10 temperature coefficient, which is widely used in scientific literature, is a measure of the temperature sensitivity of chemical reaction rates or biological processes. However, the conclusions drawn from applying this coefficient to experimental data obtained from biological processes are not universal. In many biological processes, Q10 values are often discordant with the results predicted by the Arrhenius law. The hypothesis tested in the present study is that this problem arises mainly from the fact that the Q10 coefficient is defined by the ratio between rates described by exponential laws instead of power laws. Considering this hypothesis and the need to review the mathematical laws and models currently used to describe rates and Q10 coefficients, we propose a model beyond the usual Arrhenius theory or exponential decay law herein. The proposed mathematical model is based on the theory of deformed exponential functions, with the ordinary Q10 model representing the conventional exponential function. Therefore, all results following the standard model remain valid. Moreover, we include a Q10 free open-source code, written in Python, and compatible with Windows, Linux and macOS platforms. The validation of the proposed model and confirmation of the given hypothesis were performed based on the following temperature-dependent biological processes: soil organic carbon (SOC) decomposition (which is essential to forecast the impact of climate change on terrestrial ecosystems); the metabolism of Arctic zooplankton; physiological processes of the respiratory and cardiovascular systems; rate of oxygen consumption in mitochondria of the eurythermal killifish Fundulus heteroclitus, and leaf respiration.
    Type: Article , PeerReviewed
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  • 59
    Publication Date: 2022-01-07
    Description: Since 2010, the Soil Moisture and Ocean Salinity (SMOS) satellite mission monitors the earth emission at L-Band. It provides the longest time series of Sea Surface Salinity (SSS) from space over the global ocean. However, the SSS retrieval at high latitudes is a challenge because of the low sensitivity L-Band radiometric measurements to SSS in cold waters and to the contamination of SMOS measurements by the vicinity of continents, of sea ice and of Radio Frequency Interferences. In this paper, we assess the quality of weekly SSS fields derived from swath-ordered instantaneous SMOS SSS (so called Level 2) distributed by the European Space Agency. These products are filtered according to new criteria. We use the pseudo-dielectric constant retrieved from SMOS brightness temperatures to filter SSS pixels polluted by sea ice. We identify that the dielectric constant model and the sea surface temperature auxiliary parameter used as prior information in the SMOS SSS retrieval induce significant systematic errors at low temperatures. We propose a novel empirical correction to mitigate those sources of errors at high latitudes. Comparisons with in-situ measurements ranging from 1 to 11 m depths spotlight huge vertical stratification in fresh regions. This emphasizes the need to consider in-situ salinity as close as possible to the sea surface when validating L-band radiometric SSS which are representative of the first top centimeter. SSS Standard deviation of differences (STDD) between weekly SMOS SSS and in-situ near surface salinity significantly decrease after applying the SSS correction, from 1.46 pss to 1.28 pss. The correlation between new SMOS SSS and in-situ near surface salinity reaches 0.94. SMOS estimates better capture SSS variability in the Arctic Ocean in comparison to TOPAZ reanalysis (STDD between TOPAZ and in-situ SSS = 1.86 pss), particularly in river plumes with very large SSS spatial gradients.
    Type: Article , PeerReviewed
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  • 60
    Publication Date: 2022-01-07
    Description: The exhumation of peridotite rocks in oceanic transform zones passes by the rheological transition between the ductile and brittle deformation until the complete emplacement in the oceanic lithosphere. The São Pedro and São Paulo Archipelago (SPSPA), in the Equatorial Atlantic, records the deformational products of ductile, brittle and the rocks/fluid interaction generating specific structures in each domain. The deformational stages are related to the transpressional and transtensional geodynamics of São Paulo Transform Fault. Firstly, during transpression, exhumation occurs associated with the ductile domain causing intense mylonitization in temperatures between ~700° and 800 °C, defined by olivine and orthopyroxene recrystallization. The interaction with fluids initially originated from the mantle generates amphibole and oxide-rich layers marking the passage to a semi-brittle deformation. The continuation of peridotite exhumation, associated with an NW-SE shortening and transpressional led to a higher availability of hydrothermal fluids. As a consequence, four serpentinization episodes are recorded, which are associated with semi-brittle to brittle transition under temperatures between 300° and 400 °C. Finally, the complete exhumation and establishment of brittle mechanisms led to carbonatation phase near the surface, with temperatures ranging from 300° to 150 °C. The active NW-SE tectonic stress generated E-W strike-slip faults that were filled by carbonates recording the final exhumation stage.
    Type: Article , PeerReviewed
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  • 61
    facet.materialart.
    Unknown
    Elsevier
    In:  Environmental Technology & Innovation, 17 . Art.-Nr.: 100567.
    Publication Date: 2022-01-07
    Description: The present state of constantly increasing plastic pollution is the major concern of scientific researchers. The conventional techniques applied (i.e., burning and landfilling) to get plastic degraded from the environment are inadequate due to harmful byproducts and limited to its recycling. In this review, we have recapitulated recent biotechnological approaches, including synthetic microbial consortia, systems biology tools, and genetic engineering techniques which can pave the path towards the plastic bioremediation and degradation. Moreover, potential plastic degrader microbes and their degradation pathways are also summarized. Lastly, this review focuses on enhancing the understanding of the degradation ability of microorganisms using contemporary biotechnological tools.
    Type: Article , PeerReviewed
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  • 62
    Publication Date: 2022-01-07
    Description: Atmospheric deposition of aerosols to the ocean provides an important pathway for the supply of vital micronutrients, including trace metals. These trace metals are essential for phytoplankton growth, and therefore their delivery to marine ecosystems can strongly influence the ocean carbon cycle. The solubility of trace metals in aerosols is a key parameter to better constrain their potential impact on phytoplankton growth. To date, a wide range of experimental approaches and nomenclature have been used to define aerosol trace metal solubility, making data comparison between studies difficult. Here we investigate and discuss several laboratory leaching protocols to determine the solubility of key trace metals in aerosol samples, namely iron, cobalt, manganese, copper, lead, vanadium, titanium and aluminium. Commonly used techniques and tools are also considered such as enrichment factor calculations and air mass back-trajectory projections and recommendations are given for aerosol field sampling, laboratory processing (including leaching and digestion) and analytical measurements. Finally, a simple 3-step leaching protocol combining commonly used protocols is proposed to operationally define trace metal solubility in aerosols. The need for standard guidelines and protocols to study the biogeochemical impact of atmospheric trace metal deposition to the ocean has been increasingly emphasised by both the atmospheric and oceanographic communities. This lack of standardisation currently limits our understanding and ability to predict ocean and climate interactions under changing environmental conditions.
    Type: Article , PeerReviewed
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  • 63
    Publication Date: 2022-01-07
    Description: Highlights • Regional brain iron concentrations are heterogenous. • Regional distribution of iron is most consistent with ferritin mRNA expression. • SEC-ICP-MS reveals the protein masses that cytosolic iron is associated with. • More than 50 % of cytosolic iron is associated with ferritin. Iron is essential for brain development and health where its redox properties are used for a number of neurological processes. However, iron is also a major driver of oxidative stress if not properly controlled. Brain iron distribution is highly compartmentalised and regulated by a number of proteins and small biomolecules. Here, we examine heterogeneity in regional iron levels in 10 anatomical structures from seven post-mortem human brains with no apparent neuropathology. Putamen contained the highest levels, and most case-to-case variability, of iron compared with the other regions examined. Partitioning of iron between cytosolic and membrane-bound iron was generally consistent in each region, with a slightly higher proportion (55 %) in the ‘insoluble’ phase. We expand on this using the Allen Human Brain Atlas to examine patterns between iron levels and transcriptomic expression of iron regulatory proteins and using quantitative size exclusion chromatography-inductively coupled plasma-mass spectrometry to assess regional differences in the molecular masses to which cytosolic iron predominantly binds. Approximately 60 % was associated with ferritin, equating to approximately 25 % of total tissue iron essentially in storage. This study is the first of its kind in human brain tissue, providing a valuable resource and new insight for iron biologists and neuroscientists, alike.
    Type: Article , PeerReviewed
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  • 64
    Publication Date: 2022-01-07
    Description: The aim of this study was to investigate the syntrophic methanogenesis from the perspective of energy transfer and competition. Effects of redox materials and redox potential on direct interspecies electron transfer (DIET) were examined through thermodynamic analysis based on the energy distribution principle. Types of redox materials could affect the efficiency of DIET via changing the total energy supply of the syntrophic methanogenesis. Decreasing system redox potential could facilitate DIET through increasing the total available energy. The competition between hydrogenotrophic methanogens and DIET methanogens might be the reason for the low proportion of the DIET pathway in the syntrophic methanogenesis. A facilitation mechanism of DIET was proposed based on the energy distribution. Providing sufficient electrons, inhibiting hydrogenotrophic methanogens and adding more competitive redox couples to avoid hydrogen generation might be beneficial for the facilitation of DIET.
    Type: Article , PeerReviewed
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  • 65
    Publication Date: 2022-01-07
    Description: Highlights • NH4NO3, Tris-HCl, and NH4CH3COO are optimal buffers for use in SEC-ICP-MS metalloprotein analyses. • Optimal range of buffer concentration is 50–200 mM in SEC-ICP-MS. • 100 mM concentration reduces both protein column interactions and ICP-MS maintenance. • Dextran-based columns are best suited for the analysis of apo-copper proteins. The correct identification of the metalloproteins present in human tissues and fluids is essential to our understanding of the cellular mechanisms underpinning a host of health disorders. Separation and analysis of biological samples are typically done via size exclusion chromatography hyphenated with inductively coupled plasma-mass spectrometry (SEC-ICP-MS). Although this technique can be extremely effective in identification of potential metalloproteins, the choice of mobile phase may have a marked effect on results, results by adversely affecting metal-protein bonds of the metalloproteins of interest. To assess the choice of mobile phase on SEC-ICP-MS resolution and the resulting metalloproteome pattern, we analysed several different sample types (brain homogenate; Cu/Zn-superoxide dismutase (SOD1); a molecular weight standard mix containing ferritin (Ft), ceruloplasmin (Cp), cytochrome c (CytC), vitamin B12 (B12) and thyroglobulin (Tg) using six different mobile phase conditions (200 mM, pH 7.5 solutions of ammonium salts nitrate, acetate, and sulfate; HEPES, MOPS and Tris-HCl). Our findings suggest that ammonium nitrate, ammonium acetate and Tris-HCl are optimal choices for the mobile phase, with the specific choice being dependent on both the number of samples and method of detection that is hyphenated with separation. Furthermore, we found that MOPS, HEPES and ammonium sulfate mobile phases all caused significant changes to peak resolution, retention time and overall profile shape. MOPS and HEPES, in particular, produced additional Fe peaks that were not detected with any of the other mobile phases that were investigated. As well as this, MOPS and HEPES both caused significant concentration dependent matrix suppression of the internal standard.
    Type: Article , PeerReviewed
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  • 66
    Publication Date: 2022-01-07
    Description: Symbiotic relationships range from parasitic to mutualistic, yet all endosymbionts face similar challenges, including evasion of host immunity. Many symbiotic organisms have evolved similar mechanisms to face these challenges, including manipulation of the host's transforming growth factor-beta (TGFβ) pathway. Here we investigate the TGFβ pathway in scelaractinian corals which are dependent on symbioses with dinoflagellates from the family Symbiodiniaceae. Using the Caribbean coral, Orbicella faveolata, we explore the effects of enhancement and inhibition of the TGFβ pathway on host gene expression. Following transcriptomic analyses, we demonstrated limited effects of pathway manipulation in absence of immune stimulation. However, manipulation of the TGFβ pathway significantly affects the subsequent ability of host corals to mount an immune response. Enhancement of the TGFβ pathway eliminates transcriptomic signatures of host coral immune response, while inhibition of the pathway maintains the response. This is, to our knowledge, the first evidence of an immunomodulatory role for TGFβ in a scelaractinian coral. These findings suggest variation in TGFβ signaling may have implications in the face of increasing disease prevelance. Our results suggest that the TGFβ pathway can modulate tradeoffs between symbiosis and immunity. Further study of links between symbiosis, TGFβ, and immunity is needed to better understand the ecological implications of these findings.
    Type: Article , PeerReviewed
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  • 67
    Publication Date: 2022-01-07
    Description: Highlights • Microplastics act as anthropogenic vectors of trace metals in freshwaters. • Adsorption capacity of microplastics is enhanced by biofilms but is not strong as natural substrates. • Biofilms alter the adsorption kinetics and mechanisms of trace metals onto microplastics. • Microplastics enhance exchange rates of trace metals between water and solid materials. • Anthropogenic substrate is necessary in evaluation of migration and fate of trace metals. Microplastics (MPs) are ubiquitous in freshwater environments, and represent an emerging anthropogenic vector for contaminants, such as trace metals. In this study, virgin expanded polystyrene (PS) particles were placed in a eutrophic urban lake and a reservoir serving as the resource of domestic water for 4 weeks, to develop biofilms on the surface. For comparison, natural adsorbents in the form of suspended particles and surficial sediment were also sampled from these waterbodies. The trace metal adsorption properties of anthropogenic (virgin and biofilm covered microplastics) and natural substrates were investigated and compared via batch adsorption experiments. The adsorption isotherms fitted the Langmuir model, revealed that biofilms could enhance the trace metal adsorption capacity of MPs. However, natural substrates still had a greater adsorption capacity. Biofilms also alter the adsorption kinetics of trace metals onto MPs. The process of adsorption onto virgin MPs was dominated by intraparticle diffusion, whereas film diffusion governed adsorption onto biofilm covered microplastics and natural substrates. The trace metal adsorption of all the substrates was significantly dependent on pH and ionic strength. The adsorption mechanisms were further analyzed by SEM-EDS and FT-IR. The enhancement of adsorption was mainly attributed to complexation with functional groups contained in the biofilms, including carboxyl, amino, and phenyl-OH. Collectively, biofilm development intensifies the role of MPs in the migration and fate of trace metals in freshwater, since it does not give MPs an edge over natural substrates in adsorption.
    Type: Article , PeerReviewed
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  • 68
    Publication Date: 2022-01-07
    Description: Highlights • New insights of CH4 and CO2 hydrates are explored using MD strategy. • The bubble evolution appears to be important over dissociation process. • RDF, MSD, AOP, and diffusion coefficient can be used to examine hydrate stability. • The most stable structure of CH4 and CO2 molecules in the gas hydrate is found. • A promising match is noticed between the MD and literature findings. A comprehensive knowledge and precise estimation of the dynamic, structural, and thermodynamic characteristics of hydrates are needed to assess the stability of gas hydrates. Thermodynamic model and experimental studies can be utilized to compute the physical and dynamic properties of hydrate structures. The use of molecular dynamic (MD) simulation is a well-established approach in gas hydrate studies at the atomic level where the properties of interest are obtained from the numerical solution of Newtonian equations. The present work uses MD simulations by employing the constant temperature-constant pressure (NPT), constant temperature-constant volume (NVT) conditions, and the consistent valence force field (CVFF) to monitor the stability and decomposition of methane and carbon dioxide gas hydrates with different compositions. The effects of temperature and composition on the hydrate stability are investigated. In this study, we also compute the radial distribution function, mean square displacement, diffusion coefficient, lattice parameter, potential energy, dissociation enthalpy as well as the density of methane and carbon dioxide under various thermodynamic and process conditions. The formation of methane and carbon dioxide bubbles is studied to investigate bubble evolution during hydrate dissociation. The sizes of methane and carbon dioxide bubbles are not the same due to different solubility conditions of methane and carbon dioxide in liquid water. In addition, the influences of pressure and temperature on the lattice parameter and density of clathrate hydrates are discussed. The obtained results are consistent with previous theoretical and experimental findings, implying that the methodology followed in this work is reliable. The most stable arrangement of methane and carbon dioxide molecules in the gas hydrate is found. The insights/findings of this study might be useful to further understand detailed transport phenomena (e.g., molecular interactions, gas production rate, carbon dioxide replacement, and carbon dioxide capture) involved in the process of carbon dioxide injection into gas hydrate reservoirs.
    Type: Article , PeerReviewed
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  • 69
    Publication Date: 2022-01-07
    Description: Deep-ocean islands have long been associated with the generation of oceanic eddies in their wakes. However, their interaction with incoming eddies has seldom been considered. This study focuses on the characterization of background and locally generated mesoscale eddies in the Cabo Verde archipelago between 2003 and 2014. Special attention is given to the interaction of incoming eddies with the bathymetry of the islands, along with their impacts on the local generation of eddies. Island-induced wind-shear effects are also considered. In addition, some examples of the biological response to background and locally generated eddies are discussed. This is achieved by combining remote-sensing satellite observations for wind, sea surface height, and chlorophyll-a (Chla) surface concentrations. The results show that the interaction between incoming background eddies and the archipelago is a recurrent phenomenon, which results in eddy deflection, splitting, merging, intensification, and termination (sorted by highest to lowest number of occurrences). Local island-induced disturbances are also significant, mainly due to atmospheric effects. Such processes result in the generation of island-induced eddies and in wind-mediated eddy intensification and confinement, more often observed in the leeward group. Nonetheless, it is strongly suggested that many of the locally generated eddies are a direct product or by-product of the interaction of background eddies with the islands. With respect to the biological realm, a locally generated cyclonic eddy is observed to originate a pronounced phytoplankton bloom in the vicinity of the tallest island. Nonetheless, background eddies generated off the African coast are often associated with enhanced Chla concentrations when they intersect the archipelago. Such observations challenge the idea that local biological productivity in deep oceanic islands is exclusively driven by island-induced mechanisms.
    Type: Article , PeerReviewed
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  • 70
    Publication Date: 2022-01-07
    Description: In an era of electronics, recovering the precious metal such as gold from ever increasing piles of electronic-wastes and metal-ion infested soil has become one of the prime concerns for researchers worldwide. Biological mining is an attractive, economical and non-hazardous to recover gold from the low-grade auriferous ore containing waste or soil. This review represents the recent major biological gold retrieval methods used to bio-mine gold. The biomining methods discussed in this review include, bioleaching, bio-oxidation, bio-precipitation, bio-flotation, bio-flocculation, bio-sorption, bio-reduction, bio-electrometallurgical technologies and bioaccumulation. The mechanism of gold biorecovery by microbes is explained in detail to explore its intracellular mechanistic, which help it withstand high concentrations of gold without causing any fatal consequences. Major challenges and future opportunities associated with each method and how they will dictate the fate of gold bio-metallurgy from metal wastes or metal infested soil bioremediation in the coming future are also discussed. With the help of concurrent advancements in high-throughput technologies, the gold bio-exploratory methods will speed up our ways to ensure maximum gold retrieval out of such low-grade ores containing sources, while keeping the gold mining clean and more sustainable.
    Type: Article , PeerReviewed
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  • 71
    Publication Date: 2022-05-31
    Description: One of the best-known greenhouse gases, CO2, has been increasing in the last decade of about 1.7%. To overcome the well-known global problems related to this gas, researchers of all over the world are working very hard in order to develop any strategies to seriously solve this issue. In this chapter, the authors focus their attention on one of the possible solutions to the problem: bacteria that are CO2 capture cells which have carried out this task since ancient times. In our work we make an excursus on all the biochemical processes of CO2 capture carried out by bacteria, ending with a detailed comparison of the most studied enzymes. One of the alternatives will be to genetically modify the organisms known to date to speed up their conversion process.
    Type: Book chapter , NonPeerReviewed
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