ALBERT

Description: When cumulonimbus clouds aggregate, developing into a single entity with precipitation covering a horizontal scale of hundreds of kilometers, they are called mesoscale convective systems (MCSs). They account for much of Earth’s precipitation, generate severe weather events and flooding, produce prodigious cirriform anvil clouds, and affect the evolution of the larger-scale circulation. Understanding the inner workings of MCSs has resulted from developments in observational technology and modeling. Time–space conversion of ordinary surface and upper-air observations provided early insight into MCSs, but deeper understanding has followed field campaigns using increasingly sophisticated radars, better aircraft instrumentation, and an ever-widening range of satellite instruments, especially satellite-borne radars. High-resolution modeling and theoretical insights have shown that aggregated cumulonimbus clouds induce a mesoscale circulation consisting of air overturning on a scale larger than the scale of individual convective up- and downdrafts. These layers can be kilometers deep and decoupled from the boundary layer in elevated MCSs. Cooling in the lower troposphere and heating aloft characterize the stratiform regions of MCSs. As a result, long-lived MCSs with large stratiform regions have a top-heavy heating profile that generates potential vorticity in midlevels, thus influencing the larger-scale circulation within which the MCSs occur. Global satellite data show MCSs varying in structure, depending on the prevailing large-scale circulation and topography. These patterns are likely to change with global warming. In addition, environmental pollution affects MCS structure and dynamics subtly. Feedbacks of MCSs therefore need to be included or parameterized in climate models.

Description: The microphysical processes inside convective clouds play an important role in climate. They directly control the amount of detrainment of cloud hydrometeor and water vapor from updrafts. The detrained water substance in turn affects the anvil cloud formation, upper-tropospheric water vapor distribution, and thus the atmospheric radiation budget. In global climate models, convective parameterization schemes have not explicitly represented microphysics processes in updrafts until recently. In this paper, the authors provide a review of existing schemes for convective microphysics parameterization. These schemes are broadly divided into three groups: tuning-parameter-based schemes (simplest), single-moment schemes, and two-moment schemes (most comprehensive). Common weaknesses of the tuning-parameter-based and single-moment schemes are outlined. Examples are presented from one of the two-moment schemes to demonstrate the performance of the scheme in simulating the hydrometeor distribution in convection and its representation of the effect of aerosols on convection.

Description: The central change in understanding of the ocean circulation during the past 100 years has been its emergence as an intensely time-dependent, effectively turbulent and wave-dominated, flow. Early technologies for making the difficult observations were adequate only to depict large-scale, quasi-steady flows. With the electronic revolution of the past 50+ years, the emergence of geophysical fluid dynamics, the strongly inhomogeneous time-dependent nature of oceanic circulation physics finally emerged. Mesoscale (balanced), submesoscale oceanic eddies at 100-km horizontal scales and shorter, and internal waves are now known to be central to much of the behavior of the system. Ocean circulation is now recognized to involve both eddies and larger-scale flows with dominant elements and their interactions varying among the classical gyres, the boundary current regions, the Southern Ocean, and the tropics.

Description: The authors present an observationally based evaluation of the vertically resolved cloud ice water content (CIWC) and vertically integrated cloud ice water path (CIWP) as well as radiative shortwave flux downward at the surface (RSDS), reflected shortwave (RSUT), and radiative longwave flux upward at top of atmosphere (RLUT) of present-day global climate models (GCMs), notably twentieth-century simulations from the fifth phase of the Coupled Model Intercomparison Project (CMIP5), and compare these results to those of the third phase of the Coupled Model Intercomparison Project (CMIP3) and two recent reanalyses. Three different CloudSat and/or Cloud–Aerosol Lidar and Infrared Pathfinder Satellite Observations (CALIPSO) combined ice water products and two methods are used to remove the contribution from the convective core ice mass and/or precipitating cloud hydrometeors with variable sizes and falling speeds so that a robust observational estimate can be obtained for model evaluations. The results show that, for annual mean CIWC and CIWP, there are factors of 2–10 (either over- or underestimate) in the differences between observations and models for a majority of the GCMs and for a number of regions. Most of the GCMs in CMIP3 and CMIP5 significantly underestimate the total ice water mass because models only consider suspended cloud mass, ignoring falling and convective core cloud mass. For the annual means of RSDS, RLUT, and RSUT, a majority of the models have significant regional biases ranging from −30 to 30 W m−2. Based on these biases in the annual means, there is virtually no progress in the simulation fidelity of RSDS, RLUT, and RSUT fluxes from CMIP3 to CMIP5, even though there is about a 50% bias reduction improvement of global annual mean CIWP from CMIP3 to CMIP5. It is concluded that at least a part of these persistent biases stem from the common GCM practice of ignoring the effects of precipitating and/or convective core ice and liquid in their radiation calculations.

Description: Yanai and coauthors utilized the meteorological data collected from a sounding network to present a pioneering work in 1973 on thermodynamic budgets, which are referred to as the apparent heat source (Q1) and apparent moisture sink (Q2). Latent heating (LH) is one of the most dominant terms in Q1. Yanai’s paper motivated the development of satellite-based LH algorithms and provided a theoretical background for imposing large-scale advective forcing into cloud-resolving models (CRMs). These CRM-simulated LH and Q1 data have been used to generate the look-up tables in Tropical Rainfall Measuring Mission (TRMM) LH algorithms. A set of algorithms developed for retrieving LH profiles from TRMM-based rainfall profiles is described and evaluated, including details concerning their intrinsic space–time resolutions. Included in the paper are results from a variety of validation analyses that define the uncertainty of the LH profile estimates. Also, examples of how TRMM-retrieved LH profiles have been used to understand the life cycle of the MJO and improve the predictions of global weather and climate models as well as comparisons with large-scale analyses are provided. Areas for further improvement of the TRMM products are discussed.

Description: The authors survey a series of modeling studies that have examined the influences that cloud microphysical processes can have on tropical cyclone (TC) motion, the strength and breadth of the wind field, inner-core diabatic heating asymmetries, outer-core convective activity, and the characteristics of the TC anvil cloud. These characteristics are sensitive to the microphysical parameterization (MP) in large part owing to the cloud-radiative forcing (CRF), the interaction of hydrometeors with radiation. The most influential component of CRF is that due to absorption and emission of longwave radiation in the anvil, which via gentle lifting directly encourages the more extensive convective activity that then leads to a radial expansion of the TC wind field. On a curved Earth, the magnitude of the outer winds helps determine the speed and direction of TC motion via the beta drift. CRF also influences TC motion by determining how convective asymmetries develop in the TC inner core. Further improvements in TC forecasting may require improved understanding and representation of cloud-radiative processes in operational models, and more comprehensive comparisons with observations are clearly needed.

Description: The Asian monsoon is a planetary-scale circulation system powered by the release of latent heat, but important features of deep convection and rainfall distribution cannot be adequately represented by the large-scale patterns. This is mainly due to the strong influences of terrain that are important across a wide range of horizontal scales, especially over the Maritime Continent where the complex terrain has a dominant effect on the behavior of convective rainfall during the boreal winter monsoon. This chapter is a review and summary of published results on the effects on monsoon convection due to interactions between the Maritime Continent terrain and large-scale transient systems. The Maritime Continent topographic features strongly affect both the demarcation of the boreal summer and winter monsoon regimes and the asymmetric seasonal marches during the transition seasons. In the western part of the region, the complex interactions that lead to variability in deep convection are primarily controlled by the cold surges and the synoptic-scale Borneo vortex. The Madden–Julian oscillation (MJO) reduces the frequency of weaker surges through an interference with their structure. It also influences convection, particularly on the diurnal cycle and when synoptic activities are weak. When both surges and the Borneo vortex are present, interactions between these circulations with the terrain can cause the strongest convection, which has included Typhoon Vamei (2001), which is the only observed tropical cyclone that developed within 1.5° of the equator. The cold surges are driven by midlatitude pressure rises associated with the movement of the Siberian high. Rapid strengthening of surge northeasterly winds can be explained as the tropical response via a geostrophic adjustment process to the pressure forcing in the form of an equatorial Rossby wave group. Dispersion of meridional modes leads to a northeast–southwest orientation that allows the surge to stream downstream through the similarly oriented South China Sea. This evolution leads to a cross-equatorial return flow and a cyclonic circulation at the equator, and thus a mechanism for equatorial cyclogenesis. Although the narrow width of the southern South China Sea facilitates strengthening of the cold surge, it also severely restricts the likelihood of cyclone development so that Vamei remains to be the only typhoon observed in the equatorial South China Sea. Climate variations from El Niño–Southern Oscillation to climate change may impact the interactions between the large-scale motion and Maritime Continent terrain because they lead to changes in the mean flow. The thermodynamic effects on the interaction between MJO and the monsoon surges and Borneo vortex over the complex terrain also need to be addressed. These and other questions such as any possible changes in the likelihood of equatorial tropical cyclogenesis as a result of climate change are all important areas for future research.

Description: Insights by Professor Michio Yanai on tropical waves, which have been vital ingredients for progress in tropical meteorology over the last half-century, are recollected. This study revisits various aspects of research on tropical waves over the last five decades to examine, in Yanai’s words, “the nature of ‘A-scale’ tropical wave disturbances and the interaction of the waves and the ‘B-scale’ phenomena (cloud clusters),” the fundamental problem posed by Yanai at the design phase of the GARP Atlantic Tropical Experiment (GATE) in 1971. The various contributions of Michio Yanai to the current understanding of the dynamics of the tropical atmosphere are briefly reviewed to show how his work has led to several current theories in this field.

Description: Although atmospheric observing systems were already an important part of meteorology before the American Meteorological Society was established in 1919, the past 100 years have seen a steady increase in their numbers and types. Examples of how observing systems were developed and how they have enabled major scientific discoveries are presented. These examples include observing systems associated with the boundary layer, the upper air, clouds and precipitation, and solar and terrestrial radiation. Widely used specialized observing systems such as radar, lidar, and research aircraft are discussed, and examples of applications to weather forecasting and climate are given. Examples drawn from specific types of chemical measurements, such as ozone and carbon dioxide, are included. Sources of information on observing systems, including other chapters of this monograph, are also discussed. The past 100 years has been characterized by synergism between societal needs for weather observations and the needs of fundamental meteorological research into atmospheric processes. In the latter half of the period, observing system improvements have been driven by the increasing demands for higher-resolution data for numerical models, the need for long-term measurements, and for more global coverage. This has resulted in a growing demand for data access and for integrating data from an increasingly wide variety of observing system types and networks. These trends will likely continue.

Description: The polar regions present several unique challenges to meteorology, including remoteness and a harsh environment. We summarize the evolution of polar meteorology in both hemispheres, beginning with measurements made during early expeditions and concluding with the recent decades in which polar meteorology has been central to global challenges such as the ozone hole, weather prediction, and climate change. Whereas the 1800s and early 1900s provided data from expeditions and only a few subarctic stations, the past 100 years have seen great advances in the observational network and corresponding understanding of the meteorology of the polar regions. For example, a persistent view in the early twentieth century was of an Arctic Ocean dominated by a permanent high pressure cell, a glacial anticyclone. With increased observations, by the 1950s it became apparent that, while anticyclones are a common feature of the Arctic circulation, cyclones are frequent and may be found anywhere in the Arctic. Technology has benefited polar meteorology through advances in instrumentation, especially autonomously operated instruments. Moreover, satellite remote sensing and computer models revolutionized polar meteorology. We highlight the four International Polar Years and several high-latitude field programs of recent decades. We also note outstanding challenges, which include understanding of the role of the Arctic in variations of midlatitude weather and climate, the ability to model surface energy exchanges over a changing Arctic Ocean, assessments of ongoing and future trends in extreme events in polar regions, and the role of internal variability in multiyear-to-decadal variations of polar climate.

Description: It is well known that the envelope of the Madden–Julian oscillation (MJO) consists of smaller-scale convective systems, including mesoscale convective systems (MCS), tropical cyclones, and synoptic-scale waves called “convectively coupled equatorial waves” (CCW). In fact, recent results suggest that the fundamental mechanisms of the MJO involve interactions between the synoptic-scale CCW and their larger-scale environment (Majda and Stechmann). In light of this, this chapter reviews recent and past work on two-way interactions between convective systems—both MCSs and CCW—and their larger-scale environment, with a particular focus given to recent work on MJO–CCW interactions.

Description: This volume consists of some papers presented at the AMS Symposium held to honor the memory of the late Professor Michio Yanai as well as additional works inspired by his research. By the nature of this volume, many of the contributed papers describe the development of tropical meteorology over the past half-century or so in connection with Professor Yanai’s influence on it. While most of the chapters address specific areas and discuss timely issues, in this prologue I will describe some of Professor Yanai’s contributions during the early period of his career from my own point of view. As this is a personal reminiscence, I would like to emphasize how Professor Yanai influenced me. Both Professor Yanai and I became graduate students at the University of Tokyo to begin our career as meteorologists in 1956 and 1957, respectively. Since we studied and worked together so closely for a long time, in this article I will call him Yanai-san as I have done in our personal interactions.

Description: This chapter reviews Professor Michio Yanai’s contributions to the discovery and science of the Madden–Julian oscillation (MJO). Professor Yanai’s work on equatorial waves played an inspirational role in the MJO discovery by Roland Madden and Paul Julian. Professor Yanai also made direct and important contributions to MJO research. These research contributions include work on the vertically integrated moist static energy budget, cumulus momentum transport, eddy available potential energy and eddy kinetic energy budgets, and tropical–extratropical interactions. Finally, Professor Yanai left a legacy through his students, who continue to push the bounds of MJO research.

Description: Two features of Yanai et al.’s profiles of Q1 and Q2—the commonly observed double-peak structure to Q2 and an inflection in the Q1 profile below the melting level—are explored using estimates of convective and stratiform rainfall partitioning based on Massachusetts Institute of Technology (MIT) radar reflectivity data collected during TOGA COARE. The MIT radar data allow the Q1 and Q2 profiles to be classified according to stratiform rain fraction within the radar domain and, within the limitations of the datasets, allow interpretations to be made about the relative contributions of convective and stratiform precipitation to the mean profiles. The sorting of Q2 by stratiform rain fraction leads to the confirmation of previous findings that the double-peak structure in the mean profile is a result of a combination of separate contributions of convective and stratiform precipitation. The convective contribution, which has a drying peak in the lower troposphere, combines with a stratiform drying peak aloft and low-level moistening peak to yield a double-peak structure. With respect to the inflection in the Q1 profile below the 0°C level, this feature appears to be a manifestation of melting. It is the significant horizontal dimension of the stratiform components of tropical convective systems that yields a small but measurable imprint on the large-scale temperature and moisture stratification upon which the computations of Q1 and Q2 are based. The authors conclude, then, that the rather subtle features in the Q1/Q2 profiles of Yanai et al. are directly linked to the prominence of stratiform precipitation within tropical precipitation systems.

Description: This monograph on convection-coupled systems in the tropics was inspired by the life and career of Professor Michio Yanai, whose major contributions to the subject spanned more than five decades. From a distant perspective, Professor Yanai’s career can be understood in the context of Japanese scientists who immigrated to the United States in the decades of the 1950s and 1960s, enriching the meteorological research community in the United States as well as abroad (Lewis 1993). A closer look reminds us that the tapestry of scientific progress is created by the contributions of individual scientists with their unique backgrounds, motivations, and talents, and the serendipity of events that shape their lives.

Description: Professor Yanai is remembered in our hearts as an esteemed friend. Based on his accomplishments in tropical meteorology and with his flashes of insight he led his group at the University of California, Los Angeles, in the 1980s and 1990s to explore the thermal features of the Tibetan Plateau (TP) and its relation to the Asian monsoon, and he brought forward the TP meteorology established by Ye Duzheng et al. in 1957 to a new stage. In cherishing the memory of Professor Yanai and his great contribution to the TP meteorology, the authors review their recent study on the impacts of the TP and contribute this chapter as an extension of their chapter titled “Effects of the Tibetan Plateau” published by Yanai and Wu in 2006 in the book The Asian Monsoon. The influence of a large-scale orography on climate depends not only on the mechanical and thermal forcing it exerts on the atmosphere, but also on the background atmospheric circulation. In winter the TP possesses two leading heating modes resulting from the relevant dominant atmospheric circulations, in particular the North Atlantic Oscillation and the North Pacific Oscillation. The prevailing effect of the mechanical forcing of the TP in wintertime generates a dipole type of circulation, in which the anticyclonic gyre in the middle and high latitudes contributes to the warm inland area to the west, and the cold seashore area to the east, of northeast Asia, whereas the cyclonic gyre in low latitudes contributes to the formation of a prolonged dry season over central and southern Asia and moist climate over southeastern Asia. Such a dipole circulation also generates a unique persistent rainfall in early spring (PRES) over southern China. In 1980s, Yanai and his colleagues analyzed the in situ observation and found that the constant potential temperature boundary layer over the TP can reach about 300 hPa before the summer monsoon onset. This study supports these findings, and demonstrates that such a boundary layer structure is a consequence of the atmospheric thermal adaptation to the surface sensible heating, which vanishes quickly with increasing height. The overshooting of rising air, which is induced by surface sensible heating, then can form a layer of constant potential temperature with a thickness of several kilometers. The thermal forcing of the TP on the lower tropospheric circulation looks like a sensible heat–driven air pump (SHAP). It is the surface sensible heating on the sloping sides of the plateau that the SHAP can effectively influence the Asian monsoon circulation. In spring the SHAP contributes to the seasonal abrupt change of the Asian circulation and anchors the earliest Asian summer monsoon onset over the eastern Bay of Bengal. In summer, this pumping, together with the thermal forcing over the Iranian Plateau, produces bimodality in the South Asian high activity in the upper troposphere, which is closely related to the climate anomaly patterns over South and East Asia. Because the isentropic surfaces in the middle and lower troposphere intersect with the TP, in summertime the plateau becomes a strong negative vorticity source of the atmosphere and affects the surrounding climate and even the Northern Hemispheric circulation via Rossby wave energy dispersion. Future prospects in related TP studies are also addressed.

Description: In this chapter, a model parameterization for organized tropical convection and convectively coupled tropical waves is presented. The model is based on the main three cloud types, congestus, deep, and stratiform, that are observed to play an important role in the dynamics and morphology of tropical convective systems. The model is based on the self-similarity across scales of tropical convective systems and uses physically sound theory about the mutual interactions between the three cloud types and the environment. Both linear analysis and numerical simulations of convectively coupled waves and the Madden–Julian oscillation are discussed.

Description: The field of atmospheric science has been enhanced by its long-standing collaboration with entities with specific needs. This chapter and the two subsequent ones describe how applications have worked to advance the science at the same time that the science has served the needs of society. This chapter briefly reviews the synergy between the applications and advancing the science. It specifically describes progress in weather modification, aviation weather, and applications for security. Each of these applications has resulted in enhanced understanding of the physics and dynamics of the atmosphere, new and improved observing equipment, better models, and a push for greater computing power.

Description: The authors examined the maintenance mechanisms of perturbation kinetic energy (PKE) in the tropical regions for multiple time scales by computing and analyzing its budget equation. The emphasis has been placed on the mean features of synoptic and subseasonal variabilities using a 33-yr dataset. From analysis of the contributions from u-wind and υ-wind components, the PKE maximum in the Indian Ocean is attributed less to synoptic variability and more to intraseasonal variability in which the Madden–Julian oscillation (MJO) dominates; however, there is strong evidence of seasonal variability affiliated with the Asian monsoon systems. The ones in the eastern Pacific and Atlantic Oceans are closely related to both intraseasonal and synoptic variability that result from the strong MJO and the relatively large amplitude of equatorial waves. The maintenance of the PKE budget mainly depends on the structure of time mean horizontal flows, the location of convection, and the transport of PKE from the extratropics. In the regions with strong convective activities, such as the eastern Indian Ocean to the western Pacific, the production of PKE occurs between 700 and 200 hPa at the expense of perturbation available potential energy (PAPE), which is generated by convective heating. This gain in PKE is largely offset by divergence of the geopotential component of vertical energy flux; that is, it is redistributed to the upper- and lower-atmospheric layers by the pressure field. Strong PKE generation through the horizontal convergence of the extratropical energy flux takes place in the upper troposphere over the eastern Pacific and Atlantic Ocean, and is largely balanced by a PKE loss due to barotropic conversion, which is determined solely by the sign of longitudinal stretching deformation. However, over the Indian Ocean, there is a net PKE loss due to divergence of energy flux, which is compensated by PKE gain through the shear generation.

Description: Over the past century, the atmospheric and related sciences have seen incredible advances in our understanding of Earth’s environment and our ability to monitor and predict its behavior. These advances have had a profound impact on society and have been integrated into every aspect of daily life. The American Meteorological Society (AMS) has been instrumental in supporting these advances throughout its first 100 years of existence as a scientific and professional society serving the community of professionals in the atmospheric and related oceanic and hydrologic sciences. AMS has provided opportunities for researchers and practitioners to share their scientific findings and build fruitful collaborations to further the science and its application. Through strategic initiatives at key points in its history, AMS has pushed the science forward—highlighting areas ripe for development, creating frameworks for interdisciplinary interactions, and providing innovative approaches to the dissemination of research results. As a society made up of the scientific community and led by many of the most prominent scientists of their time, AMS has been able to respond to, and often anticipate, the needs of its community.

Description: One of the most important contributions of Michio Yanai to tropical meteorology is the introduction of the concepts of apparent heat source Q1 and apparent moisture sink Q2 in the large-scale heat and moisture budgets of the atmosphere. Through the inclusion of unresolved eddy effects, the vertical profiles of apparent sources (and sinks) are generally quite different from those of true sources taking place locally. In low-resolution models, such as the conventional general circulation models (GCMs), cumulus parameterization is supposed to determine the apparent sources for each grid cell from the explicitly predicted grid-scale processes. Because of the recent advancement of computer technology, however, increasingly higher horizontal resolutions are being used even for studying the global climate, and, therefore, the concept of apparent sources must be expanded rather drastically. Specifically, the simulated apparent sources should approach and eventually converge to the true sources as the horizontal resolution is refined. For this transition to take place, the conventional cumulus parameterization must be either generalized so that it is applicable to any horizontal resolutions or replaced with the mean effects of cloud-scale processes explicitly simulated by a cloud-resolving model (CRM). These two approaches are called ROUTE I and ROUTE II for unifying low- and high-resolution models, respectively. This chapter discusses the conceptual and technical problems in exploring these routes and reviews the authors’ recent work on these subjects.

Description: This chapter proposes a working assumption as a way of conceptual simplification of the origin of Madden–Julian oscillation (MJO)-associated convection, or super cloud cluster (SCC). To develop the simplification, the importance of the synoptic-scale cold reservoir underlying the convection and its interaction with the accompanying zonal–vertical circulation is highlighted. The position of the convection with respect to that of climatological warm pool is postulated to determine the effectiveness of this framework. The authors introduce a prototype hypothesis to illustrate the usefulness of the above assumption based on a numerical simulation experiment with a global nonhydrostatic model for the boreal summer season. Premises for the hypothesis include 1) that the cloud cluster (CC) is a basic building block of tropical convection accompanying the precipitation-generated cold reservoir in its subcloud layer and 2) that a warm-pool-induced quasi-persistent zonal circulation is key for the upscale organization of CCs. The theory of squall-line structure by Rotunno, Klemp, and Weisman (hereafter RKW) is employed for the interpretation. No account is taken regarding the influences of equatorial waves as a first-order approximation. Given the premises, an SCC of O(1000) km scale is interpretable as a gigantic analog of a multicellular squall line embedded in the quasi-stationary westerly shear branch of the zonal circulation east of the warm water pool. A CC corresponds to the “cell,” and its successive formation to the east and westward movement represents an upshear-tilting core of intense updraft. The upshear-tilted SCC is favorably maintained with the precipitating area being separated from the gust front boundary between the cold reservoir and a low-level easterly, which is supported in the realm of the RKW theory where two horizontal vortices associated with the cold reservoir and vertical shear are opposite in sign but cold reservoir’s vorticity can be inferred to be larger, leading to upshear-tilted and multicellular behavior. As a counterexample, CCs to the west of the warm pool (Indian Ocean and Arabian Sea) are embedded in the easterly shear and organized into a less coherent cloud cluster complex (CCC) given the situation of RKW where two horizontal vortices associated with the cold reservoir and vertical shear are still opposite in sign, but the smaller vertical shear west of the warm pool causes even more suboptimal vorticity imbalance in the western flank of cold reservoir, leading to larger tilt with height and intermittent, less viable storm situations. A cold pool or cold reservoir, having been prevalent in mesoscale convection research, is argued to be important for the MJO as pointed out by the emerging evidence in the international field campaign for the MJO called Cooperative Indian Ocean Experiment on Intraseasonal Variability (CINDY)/DYNAMO. The simplified and idealistic hypothesis proposed here does not cover all aspects of MJO and its validation awaits further modeling and observational studies, but it can offer a framework for characterizing a fundamental aspect of the origin of MJO-associated convection.

Description: This chapter distinguishes the mechanism of tropical convective disturbances, such as a hurricane, from that of the Madden–Julian oscillation (MJO). The hurricane is maintained by organized convection around the azimuth. In a hurricane the organization of convection, the generation of eddy available potential energy, and the transformation of eddy available potential energy into eddy kinetic energy all occur on the scale of the hurricane and these are called “in-scale processes,” which invoke quadratic nonlinearity. The MJO is not a hurricane type of disturbance; organized convection simply does not drive an MJO in the same manner. The maintenance of the MJO is more akin to a multibody problem where the convection is indeed organized on scales of tropical synoptic disturbances that carry a similar organization of convection and carry similar roles for the generation of eddy available potential energy and its conversion to the eddy kinetic energy for their maintenance. The maintenance of the MJO is a scale interaction problem that comes next, where pairs of synoptic-scale disturbances are shown to interact with a member of the MJO time scale, thus contributing to its maintenance. This chapter illustrates the organization of convection, synoptic-scale energetics, and nonlinear scale interactions to show the above aspects for the mechanism of the MJO.

Description: Cloud processes play a central role in the dynamics of the tropical atmosphere, but for many years the shortcomings of cloud parameterizations have limited our ability to simulate and understand important tropical weather systems such as the Madden–Julian oscillation. Since about 2001, “superparameterization” has emerged as a new path forward, complementing but not replacing studies based on conventional parameterizations. This chapter provides an overview of work with superparameterization, including a discussion of the method itself and a summary of key results.

Description: A century ago, meteorologists regarded tropical cyclones as shallow vortices, extending upward only a few kilometers into the troposphere, and nothing was known about their physics save that convection was somehow involved. As recently as 1938, a major hurricane struck the densely populated northeastern United States with no warning whatsoever, killing hundreds. In the time since the American Meteorological Society was founded, however, tropical cyclone research blossomed into an endeavor of great breadth and depth, encompassing fields ranging from atmospheric and oceanic dynamics to biogeochemistry, and the precision and scope of forecasts and warnings have achieved a level of success that would have been regarded as impossible only a few decades ago. This chapter attempts to document the extraordinary progress in tropical cyclone research over the last century and to suggest some avenues for productive research over the next one.

Description: Publication date: Available online 22 March 2016 Source: Dendrochronologia Author(s): Alexander Gradel, Christina Hänsch, Batsaikhan Ganbaatar, Batdorj Dovdondemberel, Ochirragchaa Nadaldorj, Björn Günther The mountain forest steppe and taiga in northern Mongolia have experienced a forest decline in area and quality since the end of the last century. Changes in land use, climate, fire frequency and pest occurrence are considered to be the main drivers of this vegetation shift and desertification. Because this region is the source for major rivers, is home to a unique flora and fauna and represents an important source of timber for Mongolia, the ability of different tree species to respond to these changes and regenerate is of increasing interest. Our contribution focuses on the climate-growth relationship of old and young birch trees from two valleys in the Mongolian province of Selenge Aimag. The research site Bugant, located in the Western Khentey Mountains, was the most important logging centre in Mongolia during socialist times. Today, the vegetation is dominated by succession forests of light taiga. The research site Altansumber, on the border of the Sant and Khushat soum, is dominated by light taiga and mountain forest steppe. Traditional nomads who depend on these forests for different reasons inhabit this area. Wood cores were sampled and chronologies of young and old birch trees at Bugant and Altansumber were created. Climate data were obtained from the Eroo station, which is known in the region for its long and reliable climate record. We analysed the climate-growth relationships of the chronologies from 1962 to 2009. At both sites and in both age classes, correlations with temperature were predominantly negative, particularly in April (Bugant, south- and east-facing slopes) and May (Altansumber, north-facing slopes). Precipitation of the late summer of the previous year (August/September) positively correlated with the growth of birch at Altansumber. We assume that the significant negative correlation between winter precipitation (December/January) and the growth of old birches at both sites is due to positive effects of snow cover on the survival rate of herbivorous insect populations. Our results indicate that during the early vegetation period, younger birch trees are more dependent on water availability than older ones. Negative pointer years were characterized by below-average precipitation during the current summer period and above-average spring temperatures. For the old trees, positive pointer years were characterized by above-average summer precipitation. We conclude that water availability is the most crucial factor for the growth of white birch in northern Mongolia.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Luke J. Amos-Binks, David A. MacLean We used dendrochronological analyses to identify periods of natural disturbance and resulting growth responses in 32 mixed species stands in the Acadian forest. Stands represented five different development patterns, based upon 1946 softwood (SW) content (70–80%, termed SW versus 30–60%, termed mixedwood (MW)) and change in SW content from 1946 to 2006: SW-stable, SW-declining, MW-fluctuating, MW-stable, and MW-declining. Standardized growth chronologies were developed from 1163 increment cores sampled from balsam fir ( Abies balsamea ), red spruce ( Picea rubens ), yellow birch ( Betula alleghaniensis ), and sugar maple ( Acer saccharum ). Growth chronologies clearly identified three spruce budworm ( Choristoneura fumiferana ) outbreaks from 1914 to 1921, 1954 to 1961, and 1975 to 1984, and birch dieback from 1938 to 1948. Stand developmental patterns were caused by species characteristics and multiple interacting disturbances, resulting in mortality, growth reductions, releases, and establishment of new cohorts. Balsam fir was present in all stands, but its tendency to establish and release from advanced regeneration following budworm-caused mortality resulted in cyclical proportions of fir in the canopy. Red spruce was less vulnerable to spruce budworm and longer lived, allowing them to persist and better withstand disturbance. Periodic growth index values less than 0.9 for fir and spruce were correlated with mortality of softwoods caused by defoliation, which resulted in release and growth index values >1.1 for sugar maple. Our results demonstrated substantial variation in mixedwood development patterns over a 60-year period within a small (45 km) area.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Terje Thun, Helene Svarva Nineteen Norwegian grain chests made of Scots pine ( Pinus sylvestris L.) were analyzed by measuring tree-ring widths on photographs and scanned pictures. Seventeen of the chests were successfully dated by dendrochronology. Two of the dates are corrections of an earlier dating; the ages of these two chests were verified by radiocarbon dating. The grain chests were expected to be medieval, but four, all without carvings, proved to be post-medieval. The mean curve constructed from the dated chests matches all regional Scots pine chronologies in central and southern Norway and several from southern Sweden. All the chests were probably constructed in central Norway. Originally only sixteen chests were known, but several new ones were discovered in the course of this project.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Marcelo Pablo Chartier, María Alejandra Giantomasi, Daniel Renison, Fidel Alejandro Roig Soil erosion is a serious problem of land degradation in many parts of the world, and particularly in mountain rangelands. To understand this process it is necessary to develop methods to assess soil erosion rate in a quick, economic and accurate manner. Based on the analysis of exposed Polylepis australis roots, we tested a dendrogeomorphological method for determining soil loss rate in rills and gullies. Few studies considered non-coniferous tree rings in soil erosion analysis and we used, for the first time, an experimental procedure of root exposure and provided a comparison with roots exposed by gully erosion. Our main results showed that as a consequence of soil erosion, exposed roots changed from root-like to a more stem-like wood anatomical structure. The percentage of vessel area per tree-ring area decreases by an average of 22% to 43% during the first and second year after exposure, respectively. Moreover, and during the same time interval, the mean vessel area decreased 32% and 65%, and the number of vessels increased 7% and 48%, respectively. Scars formed at the upper side of the exposed roots are coincident with changes in wood anatomy, and both evidences may be applied to reconstruct an erosion process. This study confirms that the wood anatomy analysis of partially exposed roots can be used to determine the year in which roots are exposed and provides a useful tool to monitor soil erosion rates with a high accuracy.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): P. Šamonil, J. Timková, I. Vašíčková The use of individual-based models in the study of the spatial patterns of disturbances has opened new horizons in forest ecosystem research. However, no studies so far have addressed (i) the uncertainty in geostatistical modelling of the spatial relationships in dendrochronological data, (ii) the number of increment cores necessary to study disturbance spatial patterns, and (iii) the choice of an appropriate geostatistical model in relation to disturbance regime. In addressing these issues, we hope to contribute to advances in research methodology as well as to improve interpretations and generalizations from case studies. We used data from the beech-dominated Žofínský Prales forest reserve (Czech Republic), where we cored 3020 trees on 74 ha. Block bootstrap and geostatistics were applied to the data, which covered five decades with highly different disturbance histories. This allowed us to assess the general behavior of various mathematical models. Uncertainty in the spatial patterns and stability of the models was measured as the length of the 95% confidence interval (CI) of model parameters. According to Akaike Information Criterion (AIC), the spherical model fitted best at the range of ca. 20 m, while the exponential model was best at the range of ca. 60 m. However, the best fitting models were not always the most stable. The stability of models grew significantly with sample size. At 〈500 cores the spherical model was the most stable, while the Gaussian model was very unstable at 〈300 cores. The pure nugget model produced the most precise nugget estimate. The choice of model should thus be based on the expected spatial relations of the forest ecosystem under study. Sill was the most stable parameter, with an error of ±6–20% for ≥1110 core series. By contrast, practical range was the most sensitive, with an error of at least ±59%. The estimation of the spatial pattern of severe disturbances was more precise than that of fine-scale disturbances. The results suggest that with a sample size of 1000–1400 cores and a properly chosen model, one reaches a certain precision in estimation that does not increase significantly with growing sample size. It appears that in temperate old-growth forests controlled by fine-scale disturbances, it is necessary to have at least 500 cores to estimate sill, nugget and relative nugget, while to estimate practical range at least 1000 cores are needed. When choosing the best model, the stability of the model should be considered together with the value of AIC. Our results indicate the general limits of disturbance spatial pattern studies using dendrochronological and geostatistical methods, which can be only partially overcome by sample size or sampling design.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): L. Dinis, M.M. Savard, P. Gammon, C. Bégin, J. Vaive This study investigates Pb isotope ratios at low concentrations (parts per billion; ppb) in tree rings and soils in the Northern Athabasca Oil Sands Region (NAOSR), western Canada, to evaluate if: (1) climatic conditions influence on tree-ring Pb assimilation; and (2) such low Pb content allows inferring the regional Pb depositional history. Our results reflect the influence of winter snow cover and the importance of minimum temperature and precipitation in spring and summer on the bioavailability of Pb and its passive assimilation by trees in sub-arctic semi-humid climatic conditions. Winter conditions can influence the state of root systems that subsequently impacts the following growth period, while spring and summer conditions likely control microbial processes and water source, and may thus impact Pb assimilation by trees. Thus, the results of tree-ring Pb concentrations show interesting correlation with cumulated snow from November of the previous year to February ( ρ = 0.53; P 〈 0.01; n = 36). Likewise, the 206 Pb/ 207 Pb ratios inversely correlate with minimum temperature from April to September ( ρ = −0.67; P 〈 0.01; n = 40) and precipitation from May to August ( ρ = −0.42; P 〈 0.01; n = 36). The isotopic results also suggest that the effects of climatic variations are superimposed by regional industrial Pb deposition: Western North American Aerosols (WNAA) and fugitive dust from the oil sands mining operations appear to be the most likely sources. Importantly, this study suggests that even at low Pb concentrations, tree-ring Pb isotopes are modulated by climatic conditions and potential input of regional and long-range transport of airborne Pb. These interpretations open the possibility of using Pb isotopes as an environmental tool for inferring the pollution history in remote regions, and improving our understanding of its natural cycle through the forest environment.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Douglas J. Stevenson, Thomas B. Lynch, Pradip Saud, Robert Heineman, Randal Holeman, Dennis Wilson, Keith Anderson, Chris Cerny, James M. Guldin Each year severe winter storms (≈ice storms) damage trees throughout the southern USA. Arkansas and Oklahoma have a history of severe winter storms. To extend that history back beyond the reach of written records, a distinctive tree ring pattern or signature is needed. Storm-caused breakage, branch loss and bending stress provide that signature. We found a severe storm signature in shortleaf pine ( Pinus echinata ). We used three published site chronologies, a set of five new site chronologies from a growth-and-yield study conducted by Oklahoma State University and the unpublished Shortleaf Canyon chronology from a master’s thesis at the University of Arkansas. Our method is based on two ring width values for the first and second growing seasons after the storm standardized to the ring widths of the seven growing seasons after the storm. Concordance between storm years predicted by tree ring patterns and actual storm years was tested using Cohen’s Kappa. Concern about confounding of ice storm signals by droughts led us to test concordance between severe storms and drought in July, August and September; results were inconclusive but stand as a warning that these two phenomena cannot be distinguished with certainty in the tree ring record. Damaging severe storms occurred in about 2.8% of all years. Two out of three storms identified as “severe” produced glaze icing.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Julieta Gabriela Arco Molina, Martín Ariel Hadad, Daniel Patón Domínguez, Fidel Alejandro Roig Frost events may damage the cambium and consequently the newly produced tracheids whose cell walls have not yet completed their lignifications, leading to the formation of frost rings. This study deals with the presence of frost rings in Araucaria araucana trees according to cambial age and bark thickness, under the assumption that these factors may be involved in physical or physiological mechanisms that increase resistance to freezing temperatures that impact the cambial tissue. The study was conducted in northern Patagonia at two sites of contrasting geomorphology, and therefore potentially associated with a differential degree of exposure to extreme cold. Wood plus bark cores were extracted from main stems at two heights from the ground and from each of the four cardinal point directions for 30 individuals per site. A Linear Mixed Model and a Generalized Linear Mixed Model were applied in order to relate the bark thickness and the frequency of frost rings in accordance with the different sampling points on the stem. It was observed that as bark becomes thicker with cambial age, the frequency of frost rings decreases, indicating a possible thermal-induced mechanism of bark protection. Consequently, there is an increase in the presence of frost rings at the younger stages of tree life. Although the mechanisms of cold hardiness in trees can be complex, including aspects of the tree physiology, our data indicated that as tree age increases, the thickness of the bark is higher, resulting in a potential effect of isolation and passive protection against the harmful effects of frosts. This mechanism may be relevant in the ecology, conservation and management of forests faced with extreme variability in future climate and changing scenarios.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Dominik Florian Stangler, Martin Mann, Hans-Peter Kahle, Elena Rosskopf, Siegfried Fink, Heinrich Spiecker Studying intra-annual wood formation dynamics provides valuable information on how tree growth and forests are affected by environmental changes and climatic extreme events. This study has the aim to evaluate and to quantify synergetic potentials emerging from a combination of current state of the art techniques used to monitor intra-annual wood formation processes. Norway spruce trees were studied in detail during the growing season 2009 with weekly sampling of microcores, high resolution point-dendrometers and wood anatomical analysis. The combination of the applied techniques allowed us to convert the spatial scales of radial tracheid diameter profiles to seasonal time scales and to synchronize fluctuations in intra-annual cell diameter profiles. This spatiotemporal information was used to validate the recently introduced software MICA ( Multiple interval-based curve alignment ) . In comparison to the conventional approach of averaging profiles of tree ring variables, the MICA aligned profiles exhibit a significantly higher synchronicity of the averaged data points. We also demonstrate two new features in the MICA application that enable to extrapolate spatiotemporal information between intra-annual profiles for the construction of robust mean (consensus) profiles that are representative for the population dynamics. By using a set of complementary techniques in an integrated approach, this study highlights a new methodological framework that can contribute to a better understanding of the environmental control of wood formation during the growing season.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Filipe Campelo, Cristina Nabais, Ana Carvalho, Joana Vieira Here we present the package tracheideR to standardize profiles of tracheid features, using the R computing environment. This package contains a collection of functions to transform the raw data obtained from image analysis into a tracheidogram to better visualize the radial intra-ring variation of histometric parameters. This procedure is crucial when estimating past weather conditions with a sub-annual resolution, since tracheidograms reflect the influence of fluctuations in weather conditions throughout the growing season (such as temperature and soil water content). The main function of this package is tracheider , which takes as input raw tracheidograms and standardizes them using three different methods. The first method standardizes the number of tracheids from different radial files to the mean number of cells, allowing that different annual rings have different number of cells. The second method normalizes the number of cells of different annual rings to the same number. Finally we present a new method to standardize histometric parameters considering the relative position of the cells within the tree ring. This package was tested using two rings of Pinus pinaster to demonstrate variations between the three methods. According to our results species with high intra- and inter-annual variability, as shown by conifers species growing under Mediterranean climate, should be standardized using the “relative position” method. Finally, we suggest that this new method should be applied to other species to check its potential to detect intra-ring fluctuations in tracheid features and to improve our capacity to detect intra-annual climatic signals.

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Paolo Cherubini

Description: Publication date: March 2016 Source: Dendrochronologia, Volume 37 Author(s): Jean-Philippe Martin, Daniel Germain Dendrogeomorphology has been recognized as a useful tool to reconstruct past snow avalanche chronologies, especially in remote areas where archives are non-existent. In recent years, there have been a multiplicity of snow avalanche studies based on tree-ring analysis. Yet, the dendrogeomorphic procedure applied to snow avalanches still lacks consensus within the scientific community. This paper illustrates four issues regarding this method encountered on a dataset encompassing 293 trees sampled from 4 sites in the White Mountains (New Hampshire, United States). (1) Separating a sample in an upslope and downslope subgroup allowed to reconstruct a more thorough avalanche chronology. (2) On the other hand, a strong response at a site sheltered from any avalanche track was attributed to extreme snow loadings with a return period well above 100 years. (3) In addition to climatic disturbances, ecological disturbances such as windthrows can cause an anatomical response in the trees similar to snow avalanches. An avalanche track might act as a wind tunnel, making the underlying runout zone a suitable site to windfalls. Sampling in transects can assist in determining the limit between avalanche-related and wind-related disturbances. (4) Early-spring torrential floods and avalanche activities at a multi-process site exhibit distinct spatial patterns in the dendrogeomorphological response that allow discrimination between the two processes in the reconstruction of past chronologies. While the dendrogeomorphologist should be cautious of these issues, their acknowledgement is an opportunity to understand the interactions between the different ecological, climatic and geomorphological processes operating on the forested slopes in the alpine–subalpine environment.

Description: Publication date: Available online 23 February 2016 Source: Dendrochronologia Author(s): Irina P. Panyushkina, Alexei A. Karpukhin, Asya V. Engovatova Investigations of interactions between climate change and humans suffer from the lack of climate proxies directly linked to historical or archaeological datasets that describe past environmental conditions at a particular location and time. We present a new set of pine tree-ring records ( Pinus sylvestris L.) developed from burial timbers excavated at the historical center of Yaroslavl city, Russia. A 171-year δ 13 C tree-ring chronology from AD 1430 to AD 1600 evidences mostly wet summers during the 15th century but exceptionally dry conditions of the 16th century at the Upper Volga catchment. According to the tree-ring record there were four major droughts (〈−1.5 σ ) lasting from 9 to 26 years: 1501–1517, 1524–1533, 1542–1555 and 1570–1596, and major pluvials (>+1.5 σ ) lasting from 70 to 5 years: 1430–1500, 1518–1523, 1534–1541, and 1556–1564. We discuss a plausible contribution of these droughts to crop failures and city fires documented with historical chronicles for the Upper Volga catchment. The devastating drought regime of the 16th century corresponds to the loss of independence of the Yaroslavl principality to the Grand Duchy of Moscow and the formation of the centralized Russian State during the reign of Ivan the Terrible (1533–1584) underpinning the emergence of the Russian Empire. This study substantiates the value of archaeological timbers from the oldest Russian cities and inclusion of stable carbon isotope analysis for understanding hydroclimatic regimes across the mid latitudes of East European Plain, and their relationship to the history of Russia. Graphical abstract

Description: Publication date: Available online 4 February 2016 Source: Dendrochronologia Author(s): James H. Speer, Achim Bräuning, Qi-Bin Zhang, Kambiz Pourtahmasi, Narayan P. Gaire, Binod Dawadi, Prabina Rana, Yub Raj Dhakal, Ram Hari Acharya, Dhruba Lochan Adhikari, Shankar Adhikari, Prakash Chandra Aryal, Damodar Bagale, Binod Baniya, Sanjaya Bhandari, Navin Dahal, Suchana Dahal, Narmandakh Ganbaatar, Anjana Giri, D.B Gurung, Yeshey Khandu, Binu Maharjan, Rajan Maharjan, Rayees Ahmad Malik, Cheryl D. Nath, Bikash Nepal, Justine Ngoma, Ramesh Pant, Mitra Lal Pathak, Hari Paudel, Bimal Sharma, Md Sarwar Hossain, Bayarbaatar Soronzonbold, Thida Swe, Ichchha Thapa, Achyut Tiwari The fieldweek associated with the 4th Asian Dendrochronological Association Conference was an excellent opportunity for education, networking, and research. The participants and group leaders worked together for five days in an area that was new to some of the group leaders and new to some of the participants which enabled us to learn about forest ecology around Kathmandu and Nagarkot, Nepal. The fieldweek was an excellent networking opportunity and the group leaders and participants bonded which strengthened international research in dendrochronology and continues to foster new research collaborations. All of the group leaders and participants had the opportunity to learn about tree-ring formation in Pinus roxburghii at 1500 masl elevation, to explore its wood anatomy, and to examine specific research questions in our field area. In the end we developed a better understanding of the stand-age structure of a stand of trees in Nagarkot, explored the erosion history from exposed roots, and investigated tree health issues on closely related sites. We found that P. roxburghii poses some dating issues with false and micro rings at this elevation, but we were still able to develop a tree-ring chronology from this species and make preliminary assessments of stand dynamics and health.

Description: Publication date: Available online 15 March 2016 Source: Dendrochronologia Author(s): Ekaterina Dolgova Although long-lived trees grow in the Northern Caucasus, no single tree-ring chronology has been reported thus far from this area in the International Tree-Ring Data Base (ITRDB), neither has one been published in international journals. Extensive tree-ring studies were conducted over the last decade, and a tree-ring network was developed for the investigated area. The data on the minimum blue intensity based on 33 series of pine ( Pinus sylvestris L.) and fir ( Abies nordmanniana (Steven) Spach) is presented in this study. The minimum blue intensity (BI) chronology covers the period 1596–2011 with EPS value ≥0.85. The BI chronology strongly correlates with the mean June-September temperature (R = 0.74; p 〈 0.05) from the weather station “Kluhorskij Pereval” (1951–2011). Mean June-September temperature anomalies were reconstructed using the rescaling method. Based on the reconstruction provided in this study the twentieth century is characterized by highly increased June-September temperature. According to this study, the minimum blue intensity approach demonstrates a great potential for paleoclimatic research in the Caucasus. Vast spatial coverage of the new BI-based reconstruction based on data from only two locations in the Northern Caucasus provides prospects for reconstruction of temperature variations for a great region in the Middle East and Northern Africa.

Description: Publication date: Available online 14 December 2015 Source: Dendrochronologia Author(s): Anna V. Taynik, Valentin V. Barinov, Orlan Ch. Oidupaa, Vladimir S. Myglan, Frederick Reinig, Ulf Büntgen Tree-ring research in the Altai-Sayan Mountains so far only considered a limited number of well-replicated site chronologies. The dendroecological and palaeoclimatological potential and limitations of large parts of south-central Russia therefore remain rather unexplored. Here, we present a newly updated network of 13 larch ( Larix sibirica Ldb.) tree-ring width (TRW) chronologies from mid to higher elevations along a nearly 1000 km west-to-east transect across the greater Altai-Sayan region. All data were sampled between 2009 and 2014. The corresponding site chronologies cover periods from 440 to 860 years. The highest TRW agreement is found between chronologies ≥2200 m asl, whereas the material from lower elevations reveals overall less synchronized interannual to longer-term growth variability. While fluctuations in average June–July temperature predominantly contribute to the growth at higher elevations, arid air masses from Mongolia mainly affect TRW formation at lower elevations. Our results are indicative for the dendroclimatological potential of the Altai-Sayan Mountains, where both, variation in summer temperature and hydroclimate can be robustly reconstructed back in time. These findings are valid for a huge region in central Asia where reliable meteorological observations are spatially scarce and temporally restricted to the second half of the 20th century. The development of new high-resolution climate reconstruction over several centuries to millennia will further appear beneficial for timely endeavors at the interface of archaeology, climatology and history.

Description: Publication date: November 2015 Source: Dendrochronologia, Volume 36 Author(s): Maryann R. Pirie, Anthony M. Fowler, Christopher M. Triggs Knowing the number of rings from the pith to the last cross-dated ring on incremental cores is important for regional curve standardisation, for constructing the best chronology by excluding rings formed when the tree was young, and for forest stand dynamics and regeneration studies. As the pith is rarely present on the samples an estimate of the distance to the pith is required. The aim of this paper is to assess the accuracy of three commonly used pith offset estimation methods for estimating pith offsets from kauri incremental cores. Literature identifies three main approaches for estimating pith offsets: Duncan’s geometric method, the concentric circles method (CCM), and the radius–length method. The accuracy of geometric and CMM were assessed using virtual cores constructed from an Agathis australis (Kauri) cross-section. Then the estimates for all three methods were applied to a subset of the kauri incremental cores database. The most accurate method for estimating the pith offset for kauri trees was found to be geometric method, followed by CCM. However, these approaches could only be used to estimate the pith offset for a few cores as they require the core to pass close enough to the pith that there is visible curvature on the cores. For most cores the radius–length method is the only method available for estimating the pith offset. This method relies on the assumption that the pith is located at the geometric centre of the tree which may not be a valid assumption for some species.

Description: Publication date: Available online 11 January 2016 Source: Dendrochronologia Author(s): Lena Hellmann, Leonid Agafonov, Olga Churakova (Sidorova), Elisabeth Düthorn, Ólafur Eggertsson, Jan Esper, Alexander V. Kirdyanov, Anastasia A. Knorre, Pavel Moiseev, Vladimir S. Myglan, Anatoly N. Nikolaev, Frederick Reinig, Fritz Schweingruber, Olga Solomina, Willy Tegel, Ulf Büntgen Arctic driftwood represents a unique proxy archive at the interface of marine and terrestrial environments. Combined wood anatomical and dendrochronological analyses have been used to detect the origin of driftwood and may allow past timber floating activities, as well as past sea ice and ocean current dynamics to be reconstructed. However, the success of driftwood provenancing studies depends on the length, number, and quality of circumpolar boreal reference chronologies. Here, we introduce a Eurasian-wide high-latitude network of 286 ring width chronologies from the International Tree Ring Data Bank (ITRDB) and 160 additional sites comprising the three main boreal conifers Pinus , Larix , and Picea . We assess the correlation structure within the network to identify growth patterns in the catchment areas of large Eurasian rivers, the main driftwood deliverers. The occurrence of common growth patterns between and differing patterns within catchments indicates the importance of biogeographic zones for ring width formation and emphasizes the degree of spatial precision when provenancing. Reference chronologies covering millennial timescales are so far restricted to a few larch sites in Central and Eastern Siberia (eastern Taimyr, Yamal Peninsula and north-eastern Yakutia), as well as several pine sites in Scandinavia, where large rivers are missing though. The general good spatial coverage of tree-ring sites across northern Eurasia indicates the need for updating and extending existing chronologies rather than developing new sites.

Description: Publication date: Available online 4 February 2016 Source: Dendrochronologia Author(s): Achyut Tiwari, Ze-Xin Fan, Alistair S. Jump, Shu-Feng Li, Zhe-Kun Zhou Population structure and tree recruitment dynamics in the natural treeline ecotone of high mountains are strong indicators of vegetation responses to climate. Here, we examined recruitment dynamics of Abies spectabilis across the treeline ecotone (3439–3638 m asl) of Chimang Lekh of Annapurna Conservation Area in the Trans-Himalayan zone of central Nepal. Dendrochronological techniques were used to establish stand age structure by ring counts of adults, and by terminal bud scar count for seedlings and saplings. The results showed abundant seedling recruitment, higher regenerative inertia and colonization with a consistent range shift of the A. spectabilis treeline. The upward expansion of this sub-alpine treeline was found to be driven by a strong dependence of seedling recruitment and radial growth on snowmelt and precipitation as temperatures rise. The radial growth of A. spectabilis at the alpine timberline ecotone (ATE) and closed timberline forest (CTF) showed sensitivity to spring season (March–May) climate. Tree ring indices of CTF showed a strong positive correlation with spring and annual precipitation, and a significant negative correlation with spring and annual temperature, however, moisture sensitivity was less strong at ATE than CTF.

Description: Publication date: Available online 31 December 2015 Source: Dendrochronologia Author(s): Olga V. Churakova (Sidorova), Aleksandr V. Shashkin, Rolf T.W. Siegwolf, Renato Spahni, Thomas Launois, Matthias Saurer, Marina V. Bryukhanova, Anna V. Benkova, Anna V. Kuptsova, Philippe Peylin, Eugene A. Vaganov, Valerie Masson-Delmotte, John Roden Tree-ring width and stable isotopic composition are widely used for the reconstruction of environmental conditions. Eco-physiological models simulating δ 13 C and δ 18 O provide tools to constrain the interpretation of measured tree-ring variations and their relationships to environmental variables. Here, we apply biochemical models of photosynthesis and a model of stomatal conductance to simulate the intra-annual dynamics of δ 13 C values in photo assimilates and tree-rings. We use these models to investigate the physiological responses of larch trees growing on permafrost to variability in precipitation and permafrost depth associated with regional temperature and precipitation changes. Tree-ring width, δ 13 C and δ 18 O in wood and cellulose were measured in larch ( Larix cajanderi Mayr.) samples from northeastern Yakutia (69°N, 148°E) for the period from 1945 to 2004 and used for comparisons with modeled δ 13 C and δ 18 O data. Mechanistic models that quantify physical and biochemical fractionation processes leading to oxygen isotope variation in organic matter are used to identify source water for trees growing on permafrost in Siberia. These models allowed us to investigate the influence of a variety of climatic factors on Siberian forest ecosystem water relations that impact isotope fractionation. Based on δ 13 C and δ 18 O in tree wood and cellulose measurements as well as outputs from different eco-physiological models, we assume that larch trees from northeastern Yakutia can have limited access to the additional thawed permafrost water during dry summer periods.

Description: Publication date: Available online 20 October 2015 Source: Dendrochronologia Author(s): Vladimir V. Shishov, Ivan I. Tychkov, Margarita I. Popkova, Viсtor A. Ilyin, Marina V. Bryukhanova, Alexander V. Kirdyanov It is generally assumed in dendroecological studies that annual tree-ring growth is adequately determined by a linear function of local or regional precipitation and temperature with a set of coefficients that are temporally invariant. However, various researchers have maintained that tree-ring records are the result of multivariate, often nonlinear biological and physical processes. To describe critical processes linking climate variables with tree-ring formation, the process-based tree-ring Vaganov–Shashkin model (VS-model) was successfully used. However, the VS-model is a complex tool requiring a considerable number of model parameters that should be re-estimated for each forest stand. Here we present a new visual approach of process-based tree-ring model parameterization (the so-called VS-oscilloscope) which allows the simulation of tree-ring growth and can be easily used by researchers and students. The VS-oscilloscope was tested on tree-ring data for two species ( Larix gmelinii and Picea obovata ) growing in the permafrost zone of Central Siberia. The parameterization of the VS-model provided highly significant positive correlations ( p 〈 0.0001) between simulated growth curves and original tree-ring chronologies for the period 1950–2009. The model outputs have shown differences in seasonal tree-ring growth between species that were well supported by the field observations. To better understand seasonal tree-ring growth and to verify the VS-model findings, a multi-year natural field study is needed, including seasonal observation of the thermo-hydrological regime of the soil, duration and rate of tracheid development, as well as measurements of their anatomical features.

Description: Publication date: Available online 30 October 2015 Source: Dendrochronologia Author(s): Vladimir Matskovsky, Andrey Dolgikh, Konstantin Voronin Dendrochronology is usually the only method of precise dating of unsigned art objects made on or of wood. It has a long history of application in Europe, however in Russia such an approach is still at an infant stage, despite its cultural importance. Here we present the results of dendrochronological and radiocarbon accelerated mass spectrometry (AMS) dating of three medieval icons from the 15th–17th century that originate from the North of European Russia and are painted on wooden panels made from Scots pines. For each icon the wooden panels were dendrochronologically studied and five to six AMS dates were made. Two icons were successfully dendro-dated whereas one failed to be reliably cross-dated with the existing master tree-ring chronologies, but was dated by radiocarbon wiggle-matching. Wiggle-matching of radiocarbon dates is the most promising method for dating Russian icons in the absence of a dense dendrochronological network. However, for this case uncertainties connected with the radiocarbon method have to be taken into account and further studies of these uncertainties must be undertaken by comparing dendro-dated and radiocarbon-dated wooden works of art. Our results, moreover, showed that in two cases art-historical dates were by five to ten decades older than the earliest possible time of the creation of the icons, based on dendrochronology.

Description: 〈p〉Publication date: January 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Progress in Oceanography, Volume 170〈/p〉 〈p〉Author(s): Alba María Martínez–Pérez, Teresa S. Catalá, Mar Nieto–Cid, Jaime Otero, Marta Álvarez, Mikhail Emelianov, Isabel Reche, Xosé Antón Álvarez–Salgado, Javier Arístegui〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Fluorescent dissolved organic matter (FDOM) in the Mediterranean Sea was analysed by excitation–emission matrix (EEM) spectroscopy and parallel factor (PARAFAC) analysis during the cruise HOTMIX 2014. A 4–component model, including 3 humic–like and 1 protein–like compounds, was obtained. To decipher the environmental factors that dictate the distributions of these components, we run generalized additive models (GAMs) in the epipelagic layer and an optimum multiparametric (OMP) water masses analysis in the meso– and bathypelagic layers. In the epipelagic layer, apparent oxygen utilization (AOU) and temperature presented the most significant effects on the variability of the marine humic-like peak M fluorescence, suggesting that its distribution was controlled by the net community respiration of organic matter and photobleaching. On the contrary, the variability of the soil humic-like peak E and the protein–like peak T fluorescence was explained mainly by the prokaryotic heterotrophic abundance, which decreased eastwards. In the meso– and bathypelagic layers, water mass mixing and basin–scale mineralization processes explained 〉72% and 63% of the humic–like and protein–like fluorescence variability, respectively. When analysing the two basins separately, the OMP model offered a better explanation of the distribution of fluorescence in the eastern Mediterranean Sea, as expected from the reduced biological activity in this ultra–oligotrophic basin. Furthermore, while western Mediterranean deep waters display the usual trend in the global ocean (increase of humic–like fluorescence and decrease of protein–like fluorescence with higher AOU values), the eastern Mediterranean deep waters presented an opposite trend. Different initial fluorescence intensities of the water masses that mix in the eastern basin, with Adriatic and Aegean origins, seem to be behind this contrasting pattern. The analysis of the transect–scale mineralization processes corroborate this hypothesis, suggesting a production of humic–like and a consumption of protein–like fluorescence in parallel with water mass ageing. Remarkably, the transect–scale variability of the chromophoric dissolved organic matter (CDOM) absorbing at the excitation wavelength of the humic–like peak M indicates an unexpected loss with increasing AOU, which suggests that the consumption of the non–fluorescent fraction of CDOM absorbing at that wavelength exceeded the production of the fluorescent fraction observed here.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: February 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochimica et Biophysica Acta (BBA) - General Subjects, Volume 1863, Issue 2〈/p〉 〈p〉Author(s): Mathilde Ménard, Florent Meyer, Ksenia Parkhomenko, Cédric Leuvrey, Grégory Francius, Sylvie Bégin-Colin, Damien Mertz〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Human serum albumin (HSA) nanoparticles emerge as promising carriers for drug delivery. Among challenges, one important issue is the design of HSA nanoparticles with a low mean size of ca. 50 nm and having a high drug payload. The original strategy developed here is to use sacrificial mesoporous nanosilica templates having a diameter close to 30 nm to drive the protein nanocapsule formation. This new approach ensures first an efficient high drug loading (ca. 30%) of Doxorubicin (DOX) in the porous silica by functionalizing silica with an aminosiloxane layer and then allows the one-step adsorption and the physical cross-linking of HSA by modifying the silica surface with isobutyramide (IBAM) groups. After silica template removal, homogenous DOX-loaded HSA nanocapsules (30–60 nm size) with high drug loading capacity (ca. 88%) are thus formed. Such nanocapsules are shown efficient in multicellular tumor spheroid models (MCTS) of human hepatocarcinoma cells by their significant growth inhibition with respect to controls. Such a new synthesis approach paves the way toward new protein based nanocarriers for drug delivery.〈/p〉〈/div〉 〈/div〉 〈div xml:lang="en"〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0304416518303416-ga1.jpg" width="500" alt="Unlabelled Image" title="Unlabelled Image"〉〈/figure〉〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: January 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, Volume 1866, Issue 1〈/p〉 〈p〉Author(s): 〈/p〉

Description: 〈p〉Publication date: 1 December 2018〈/p〉 〈p〉〈b〉Source:〈/b〉 Solid State Ionics, Volume 327〈/p〉 〈p〉Author(s): W.G. Wang, X.Y. Li, T. Liu, G.L. Hao〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The electrical performances and relaxation behaviors of the Na〈sub〉0.525〈/sub〉Bi〈sub〉0.475〈/sub〉TiO〈sub〉2.975〈/sub〉 and Bi-deficient Na〈sub〉0.51〈/sub〉Bi〈sub〉0.48〈/sub〉TiO〈sub〉2.975〈/sub〉 sample were investigated. The grain conductivity of the Na〈sub〉0.525〈/sub〉Bi〈sub〉0.475〈/sub〉TiO〈sub〉2.975〈/sub〉 sample is able to reach 1.51 × 10〈sup〉−3〈/sup〉 S/cm at 673 K. In the temperature range of measurement, the grain conductivity of the Bi-deficient Na〈sub〉0.51〈/sub〉Bi〈sub〉0.48〈/sub〉TiO〈sub〉2.975〈/sub〉 sample is lower than that of the Na〈sub〉0.525〈/sub〉Bi〈sub〉0.475〈/sub〉TiO〈sub〉2.975〈/sub〉 sample. By the internal friction and dielectric relaxation spectrum, the activation energy and relaxation time at infinite temperature were determined as (0.82 eV, 2.47 × 10〈sup〉−14〈/sup〉 s), (0.67 eV, 5.82 × 10〈sup〉−12〈/sup〉 s) and (0.85 eV, 5.8 × 10〈sup〉−13〈/sup〉 s), (0.52 eV, 2.55 × 10〈sup〉−10〈/sup〉 s) for the Na〈sub〉0.525〈/sub〉Bi〈sub〉0.475〈/sub〉TiO〈sub〉2.975〈/sub〉 and Na〈sub〉0.51〈/sub〉Bi〈sub〉0.48〈/sub〉TiO〈sub〉2.975〈/sub〉 samples at the different temperature regions. In the Na〈sub〉0.525〈/sub〉Bi〈sub〉0.475〈/sub〉TiO〈sub〉2.975〈/sub〉 compound, there is larger specific free volume, higher mobile oxygen vacancy content and better oxygen vacancy mobility, which cause the higher grain conductivity in the Na〈sub〉0.525〈/sub〉Bi〈sub〉0.475〈/sub〉TiO〈sub〉2.975〈/sub〉 compound. To some extent, by the Bi-deficient method, oxygen vacancies can be introduced into the Na〈sub〉0.51〈/sub〉Bi〈sub〉0.48〈/sub〉TiO〈sub〉2.975〈/sub〉 compound and the grain conductivity may be improved, but the other side of Bi-deficiency harms the oxygen vacancy diffusion capacities in the Na〈sub〉0.5〈/sub〉Bi〈sub〉0.5〈/sub〉TiO〈sub〉3〈/sub〉 compound.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 1 December 2018〈/p〉 〈p〉〈b〉Source:〈/b〉 Solid State Ionics, Volume 327〈/p〉 〈p〉Author(s): Yonrapach Areerob, Ju Yong Cho, Won Kweon Jang, Kwang Youn Cho, Won-Chun Oh〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉A cost effective and efficient alternative counter electrode (CE) to replace commercially existing platinum (Pt)-based CEs for dye-sensitized solar cells (DSSCs) is necessary to make DSSCs competitive. Herein, we report the model-controllable synthesis of Graphene-La〈sub〉6〈/sub〉W〈sub〉2〈/sub〉O〈sub〉15〈/sub〉 doped NiSe-CoSe quantum dot (GLW-NiCoSe) nanosheets with various NiCoSe content via simple hydrothermal method and used as CE for DSSC application. Electrochemical impedance spectroscopy (EIS) results confirmed that the as-synthesized GLW-NiCoSe nanosheets quantum dot exhibited good electrocatalytic properties and a low charge transfer resistance at the electrolyte-electrode interface. In addition, Thermal images and Photocurrent also demonstrate stability effect of material with more exposed edge sites and appropriate NiCoSe ratio. GLW-NiCoSe nanosheets performed rough surfaces, well-defined interior voids, large specific surface areas and outstanding catalytic actives. Finally, the mechanism of this material has been reported. All of these results showed a high energy conversion efficiency of up to 8%, which was comparable to the Pt CE (7%). The simple fabricated and good electrocatalytic properties of GLW-NiCoSe nanosheets make them as an alternative CE for DSSCs.〈/p〉〈/div〉 〈/div〉 〈div xml:lang="en"〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0167273818304910-ga1.jpg" width="314" alt="Unlabelled Image" title="Unlabelled Image"〉〈/figure〉〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: 1 December 2018〈/p〉 〈p〉〈b〉Source:〈/b〉 Solid State Ionics, Volume 327〈/p〉 〈p〉Author(s): Ho-Young Jung, Geon-O Moon, T. Sadhasivam, Chang-Soo Jin, Won-Shik Park, Hee-Tak Kim, Sung-Hee Roh〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉To confirm the viability of a porous polyethylene (PE) separator for using in vanadium redox flow batteries (VRFBs), we conduct a comparative electroanalytical and chemical stability studies of the PE separator and Nafion 212 membrane. We characterize the physicochemical properties of the separator, such as water uptake, dimensional change, and ion conductivity, and analyze its structural and compositional features using thermogravimetric analysis, scanning electron microscopy, and X-ray photoelectron spectroscopy. We also test the chemical stability of the separator against highly oxidative V〈sup〉5+〈/sup〉 ions and the cell performance of VRFB using PE separator to assess practical applicability. In chemical stability, the change of VO〈sub〉2〈/sub〉〈sup〉+〈/sup〉 ion to VO〈sup〉2+〈/sup〉 ion is considerably lowered by the PE separator (0.01 mmol/L) than the Nafion 212 (0.27 mmol/L), which indicates that the PE separator possesses higher chemical stability. The energy efficiency of the VRFB with the PE separator is lower than that obtained with Nafion 212. However, the chemical stability of PE separator is 27 times higher than that of Nafion 212, indicating that its use will promote the long-term operation of the VRFB system. Hence, the PE separator can be considered a cost-effective option for VRFB operation, with appropriate modifications to its thickness, surface properties and pore structure.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: November 2018〈/p〉 〈p〉〈b〉Source:〈/b〉 Heliyon, Volume 4, Issue 11〈/p〉 〈p〉Author(s): Karen Gu, Lawrence Mok, Mark M.W. Chong〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The expression of any gene must be precisely controlled for appropriate function. This expression can be controlled at various levels. This includes epigenetic regulation through DNA methylation or histone modifications. At the posttranscriptional level, regulation can be via alternative splicing or controlling messenger RNA (mRNA) stability. RNA cleavage is one way to control mRNA stability. For example, microRNA (miRNA)-induced mRNA cleavage has long been recognised in plants. RNA cleavage also appears to be widespread in other kingdoms of life, and it is now clear that mRNA cleavage plays critical functions in animals. Although miRNA-induced mRNA cleavage can occur in animals, it is not a widespread mechanism. Instead, mRNA cleavage can be induced by a range of other mechanisms, including by endogenous short inhibitory RNAs (endo-siRNAs), as well as the Ribonuclease III (RNase III) enzymes Drosha and Dicer. In addition, RNA cleavage induced by endo-siRNAs and PIWI-interacting RNAs (piRNAs) is important for genome defence against transposons. Moreover, several RNase has been identified as important antiviral mediators. In this review, we will discuss these various RNA endonucleolytic cleavage mechanisms utilised by animals to regulate the expression of genes and as a defence against retrotransposons and viral infection.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: March 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Surface Science, Volume 681〈/p〉 〈p〉Author(s): Qingjun Chen, Ingeborg-Helene Svenum, Ljubisa Gavrilovic, De Chen, Edd A. Blekkan〈/p〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉Trace amounts of potassium (K) have a significant influence on the activity and selectivity of cobalt-based catalysts in Fischer–Tropsch synthesis (FTS), in which hydrogen adsorption and dissociation is one of the initial and most important steps. In this work, hydrogen adsorption and dissociation behavior on typical facets ((0001), (10–11), (10–12), (10–15) and (11–20)) of hcp Co with and without adsorbed K were systematically studied. H〈sub〉2〈/sub〉 molecular adsorption results showed that H〈sub〉2〈/sub〉 mainly adsorbed in the perpendicular mode and close to the state of free H〈sub〉2〈/sub〉. Different facets and pre-adsorbed K did not show obvious effects on the H〈sub〉2〈/sub〉 adsorption energy. Atomic hydrogen adsorption was site and facet dependent, but the maximum hydrogen adsorption energy on the different facets of hcp Co were similar (-2.64 to -2.67 eV) with the exception on the (11–20) facet where the adsorption energy was significantly lower (-2.44 eV). K had a slight destabilizing effect on the H atom adsorption on the former Co surfaces due to a very weak repulsive interaction between K and H atoms. The initial H〈sub〉2〈/sub〉 dissociation had negligible energy barriers (0–0.07 eV) on the clean surface of hcp Co, suggesting the direct dissociative adsorption of H〈sub〉2〈/sub〉. The energy barriers for H〈sub〉2〈/sub〉 dissociation are mainly caused by the approach of molecular H〈sub〉2〈/sub〉 towards the Co surface and the rotation of the H〈sub〉2〈/sub〉 molecule from the perpendicular mode to the parallel mode. The H〈sub〉2〈/sub〉 dissociation energy barriers increase by 0.02–0.17 eV after the pre-adsorption of K, indicating a slight inhibition of H〈sub〉2〈/sub〉 dissociation by K. However, the energy barriers for H〈sub〉2〈/sub〉 dissociation in the presence of K were also small (0.05–0.21 eV). This indicates that H〈sub〉2〈/sub〉 dissociates readily at typical Co-based FTS reaction temperatures (210–240 °C), both in the absence and presence of K. Different K species (K and KOH) exhibit similar effects on H〈sub〉2〈/sub〉 dissociation on hcp Co. The B〈sub〉5〈/sub〉 sites on the stepped facets, the preferred sites for K adsorption are not the most favorable site for H〈sub〉2〈/sub〉 dissociation, and K slightly hinders H〈sub〉2〈/sub〉 dissociation at the B〈sub〉5〈/sub〉 site of hcp Co.〈/p〉〈/div〉 〈h5〉Graphical abstract〈/h5〉 〈div〉〈p〉〈figure〉〈img src="https://ars.els-cdn.com/content/image/1-s2.0-S0039602818305144-fx1.jpg" width="301" alt="Image, graphical abstract" title="Image, graphical abstract"〉〈/figure〉〈/p〉〈/div〉

Description: 〈p〉Publication date: November 2018〈/p〉 〈p〉〈b〉Source:〈/b〉 Heliyon, Volume 4, Issue 11〈/p〉 〈p〉Author(s): Seungyeon Lee, Minsung Kim, Jessica S. Mendoza, Ian M. McDonough〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉A potential new clinical disorder is arising due to the addiction to cellphones called nomophobia—or feelings of discomfort or anxiety experienced by individuals when they are unable to use their mobile phones or utilize the conveniences these devices provide. However, before being able to officially classify this disorder as clinically relevant, more research needs to be conducted to determine how nomophobia relates to existing disorders. In a sample of 397 undergraduate students, the present study examined the relationship between the Nomophobia Questionnaire (NMP-Q) and the Obsessiveness Content Scale (OBS) of the Minnesota Multiphasic Personality Inventory-2 (the MMPI-2). Confirmatory factor analysis (CFA) was used to test whether the OBS Content Scale would be related to a one-factor NMP-Q solution (Fig. 1) or a four-factor NMP-Q solution (Fig. 2). Convergent and divergent validity were also investigated. The four-factor model was a better fit than the one-factor model as indicated by most fit indices. The findings showed that the OBS latent variable was correlated with all of the four NMP-Q latent variables. Mixed support was found for convergent validity, but high support was found for the divergent validity of the NMP-Q factors. This study contributes to a growing body of literature seeking to better understand the addictive nature of cellphones and takes a new perspective on addiction research and obsessiveness. These findings provide a better understanding between pre-existing assessments of personality disorders (e.g., obsessiveness) that are emerging from the overuse of mobile phones or the excessive fear of losing one's cell phone.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: November 2018〈/p〉 〈p〉〈b〉Source:〈/b〉 Heliyon, Volume 4, Issue 11〈/p〉 〈p〉Author(s): Chiara Sanmartin, Francesca Venturi, Cristina Sgherri, Anita Nari, Monica Macaluso, Guido Flamini, Mike Frank Quartacci, Isabella Taglieri, Gianpaolo Andrich, Angela Zinnai〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉This research aimed to study the effects of packaging and storage temperature on the shelf-life of an extra virgin olive oil (EVOO) as it can occur in most points of sale. The evolution of the chemical and sensory characteristics of an EVOO, initially stored in stainless steel silos under nitrogen at 12–18 °C, was evaluated after packaging. Tinplate tin (TT) and greenish glass (GG), the most used packaging containers, and temperatures of 6 and 26 °C were taken into consideration. After 125 days from packaging all the samples maintained clearness, green and yellow reflections and the positive sensory notes of bitterness and pungency of the starting EVOO. Shelf-life of EVOO was significantly affected by different storage conditions: oil samples stored in GG at 6 °C preserved for the most part the positive attributes, whereas those stored in TT at 26 °C showed a significant presence of the rancid flavor due to oxidative processes. Moreover, samples stored in GG at 6 °C maintained the highest bitterness intensity and did not show defects at the end of the storage period. The results suggest that storage in GG at a low temperature could represent a promising storage condition to slow-down the oil degradation during market storage.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: January 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Fish & Shellfish Immunology, Volume 84〈/p〉 〈p〉Author(s): Xing-Wei Xiang, Jin-Xing Xiao, Yu-Fang Zhou, Bin Zheng, Zheng-Shun Wen〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The black seabream (〈em〉Sparus macrocephlus〈/em〉) is an economically pivotal aquaculture species cultured in China and Southeast Asian countries. To understand the molecular immune mechanisms underlying the response to 〈em〉Vibrio parahaemolyticus〈/em〉, a comparative gene transcription analysis were performed with utilized fresh livers of 〈em〉V. parahaemolyticus〈/em〉-immunized 〈em〉Sparus macrocephlus〈/em〉 with a control group through RNA-Seq technology. A total of 256663 contigs were obtained after excluded the low-quality sequences and assembly. The average length of contigs collected from this research is 1066.93 bp. Furthermore, blast analysis indicates 30747 contigs were annotated based on homology with matches in the NT, NR, gene, and string databases. A gene ontology analysis was employed to classify 21598 genes according to three major functional categories: molecular function, cellular component, and biological process. A total of 14470 genes were discovered in 303 KEGG pathways. RSEM and EdgeR were introduced to estimate 3841 genes significantly different expressed (False Discovery Rate〈0.001) which includes 4072 up-regulated genes and 3771 down-regulated genes. A significant enrichment analysis of these differentially expressed genes and isogenes were conducted to reveal the major immune-related pathways which refer to the toll-like receptor, complement, coagulation cascades, and chemokine signaling pathways. In addition, 92175 potential simple sequence repeats (SSRs) and 121912 candidate single nucleotide polymorphisms (SNPs) were detected and identified sequencely in the 〈em〉Sparus macrocephlus〈/em〉 liver transcriptome. This research characterized a gene expression pattern for normal and the 〈em〉V. parahaemolyticus〈/em〉 -immunized 〈em〉Sparus macrocephlus〈/em〉 for the first time and not only sheds new light on the molecular mechanisms underlying the host-〈em〉V. parahaemolyticus〈/em〉 interaction but contribute to facilitate future studies on 〈em〉Sparus macrocephlus〈/em〉 gene expression and functional genomics.〈/p〉〈/div〉 〈/div〉

Description: 〈p〉Publication date: January 2019〈/p〉 〈p〉〈b〉Source:〈/b〉 Fish & Shellfish Immunology, Volume 84〈/p〉 〈p〉Author(s): Yi-Hong Chen, Jian-Guo He〈/p〉 〈div xml:lang="en"〉 〈h5〉Abstract〈/h5〉 〈div〉〈p〉The shrimp aquaculture industry is plagued by disease. Due to the lack of deep understanding of the relationship between innate immune mechanism and environmental adaptation mechanism, it is difficult to prevent and control the diseases of shrimp. The shrimp innate immune system has received much recent attention, and the functions of the humoral immune response and the cellular immune response have been preliminarily characterized. The role of environmental stress in shrimp disease has also been investigated recently, attempting to clarify the interactions among the innate immune response, the environmental stress response, and disease. Both the innate immune response and the environmental stress response have a complex relationship with shrimp diseases. Although these systems are important safeguards, allowing shrimp to adapt to adverse environments and resist infection, some pathogens, such as white spot syndrome virus, hijack these host systems. As shrimp lack an adaptive immune system, immunization therapy cannot be used to prevent and control shrimp disease. However, shrimp diseases can be controlled using ecological techniques. These techniques, which are based on the innate immune response and the environmental stress response, significantly reduce the impact of shrimp diseases. The object of this review is to summarize the recent research on shrimp environmental adaptation mechanisms, innate immune response mechanisms, and the relationship between these systems. We also suggest some directions for future research.〈/p〉〈/div〉 〈/div〉