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  • Engineering  (1,104)
  • Biochemistry and Biotechnology  (848)
  • 1995-1999  (1,517)
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  • 1995-1999  (1,517)
  • 1980-1984
  • 1975-1979  (435)
  • 1925-1929
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  • 1
    Electronic Resource
    Electronic Resource
    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 81-98 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The vector and scalar variables describing electromagnetic fields with different requirements of continuity can be identified to four different degrees of differential forms. The association of differential forms with finite elements leads to a set of differential forms based elements (Whitney elements); they are naturally adapted to the discretization of different vector and scalar variables. With the help of a Tonti diagram, Maxwell equations can be classified by two dual sequences together with the constitutive laws of materials. The application of Whitney elements to the two dual sequences leads to two dual approximation schemes. As an example, two dual formulations for eddy current computation using potential variables and the hybrid finite element - boundary element method are derived, where Whitney 3-D and 2-D elements are employed. A numerical application is given at the end of the paper, where the dual features of the two formulations are reported.
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  • 2
    Electronic Resource
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 125-143 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The paper proposes an iterative procedure, called current iteration, for the finite element solution of two-dimensional steady-state skin effect problems in open boundaries. In the procedure a fictitious boundary is introduced enclosing all the conductors. On it, the magnetic vector potential is first guessed and then iteratively updated according to the current density computed in the conductors. Conditions are obtained implying convergence to the exact solution of the unbounded problem whatever the initial guess. The choice of the fictitious boundary and the selection of the relaxation parameter in such a way that computational efficiency is obtained are discussed. The greatest advantage of the procedure is its ease of implementation in a pre-existing finite element code for bounded problems. An axisymmetric version of the procedure is also described since implementation only involves minor changes as compared with the 2-D one. Examples are provided in order to clarify and validate the procedure and compare it with other techniques.
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  • 3
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 225-236 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: An FFT-based formulation for the computation of electromagnetic scattering from 3-D, perfectly conducting objects is presented. The formulation solves the EFIE iteratively via a conjugate gradient scheme and has the major advantage of a low storage requirement for scatterers in the resonance region. This factor, coupled with the low run-times resulting from use of the FFT to compute the associated matrices, makes the formulation a particularly efficient one. Numerical results encompassing current distributions and far-field radar cross-sections are presented for PEC cubes of resonant size. It is shown that the computed results yield good agreement compared with other numerical techniques and experimental data.
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  • 4
    Electronic Resource
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 249-258 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: In the paper a novel finite-integration beam-propagation method (FIBPM) is presented. This method is especially suited for the simulation of optical waveguides containing extremely thin layers of complex permittivity. For calculating the propagating optical field an efficient algorithm based on expansion of the matrix exponential in Chebyshev polynomials is applied. The derivation of the propagation algorithm is given, also detailing the convergence criteria. A code for a massively parallel computer has been developed and applied successfully to complex waveguide structures used for high-power laser diodes
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  • 5
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 167-170 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: No Abstract
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  • 6
    Electronic Resource
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 215-223 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: A time domain unconditionally stable explicit method is presented which may be used to model processes governed by the diffusion equation such as transient heat flow. Unlike the explicit finite difference routine, the method models the diffusion process within the time step (MPWT). Being explicit, the method (MPWT) may easily account for non-linear physical parmeters and may be compared with the transmission line matrix (TLM) method of diffusion modelling in terms of its utility. Unlike the TLM model, however, the equivalent circuit does not contain inductive components which have no clear physical meaning. The MPWT method is based on a simple resistive and capacitive circuit model, which for short time steps reduces to the explicit finite difference formulation but is stable for large time steps. Good agreement has been found when results obtained using this algorithm are compared with other numerical methods and analytical results.
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  • 7
    Electronic Resource
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 181-190 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: This paper develops an electrical analogue for a gearbox suitable for use in the time-domain modelling of many electromechanical systems, with tensor methods being used to define the changing conditions in the gearbox brought about by backlash. Unlike most existing models it is compatible with the time-varying and discontinuous models often used to describe the electrical items of a typical system, and it allows for the effects of these items of mechanical non-linearities and discontinuities such as friction and backlash.
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  • 8
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 201-214 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Charged particle motion is incorporated within a transmission line modelling (TLM) field code to establish a new model which allows the investigation of field-particle interactions. The model is validated by using it to predict the trajectory of moving particles and the field and potential distributions inside a planar diode for which analytical solutions are available. The effect of space charge on the operation of the diode is also investigated. The model is then applied to study in detail a practical electron gun design.
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  • 9
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996) 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
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  • 10
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 145-158 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: For the interpretation of human neuromagnetic data it is necessary to compute the magnetic field of a source (e.g. a dipole) in a volume conductor (e.g. a homogeneous conducting sphere or a homogeneous head model). The Multiple Multipole (MMP) method, which is a semianalytical field calculation method, is applied to neuromagnetic field calculation for the first time. The unique feature of the MMP method is that multipole expansions are used for the description of the electromagnetic field. First a validation of the MMP method is done with the help of a spherical model and an analytical solution. Then the MMP method is applied to a realistically shaped one compartment head model. The results are compared to results obtained with the Boundary Element Method (BEM). The results suggest that it is possible to solve the neuromagnetic forward problem faster with the help of the MMP method than with the conventional numerical field calculation methods for realistic shaped volume conductor models. Further investigations are necessary to tackle the inverse problem of biomagnetism with the MMP method.
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  • 11
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 237-248 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: A spectral estimation technique based on Prony's method has been used to analyse a five section microstrip interdigital filter with the TLM method. The time response of the filter is expressed as the sum of only five damped sinusoids, yielding an analytical expression for the time response. Furthermore, since an analytical Fourier transform exists for this expression, the frequency response is obtained without applying the fast Fourier or discrete Fourier transform. This typically reduces the time required for a TLM analysis by a factor of five. The approximation agrees very well with a full TLM time response. It is also shown that the numerical noise due to single precision computation of the absorbing boundary algorithm can be eliminated by digital filtering techniques. The effect of the via holes used for grounding the quarter-wave resonators of the filter has been included by discretizing them along with the rest of the circuit. Scattering parameters for the filter compare well with measurements published by Swanson.
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  • 12
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 271-294 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Recently, a new method has been presented for the discrete simulation of multidimensional systems, which are described by linear partial differential equations with constant coefficients. It is based on methods customary in linear systems theory and digital signal processing and uses a frequency-domain representation of the continuous system to be simulated. A proper choice of functional transformations for each independent variable allows us to treat the influence of initial conditions, boundary conditions and excitation functions separately by suitable transfer functions. From these, corresponding discrete transfer functions and the structure of a discrete system for the simulation of the continuous problem are derived. The application of this method to wave propagation problems on uniform transmission lines is presented here. At first, the continuous problem is characterized by transfer functions; then the derivation of a discrete system is shown, and finally, some simulation results and a comparison with other methods are given.
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  • 13
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 325-325 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
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  • 14
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 335-344 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The first part of the paper presents the implementation and performance of a new absorbing boundary condition (ABC) for truncating finite element meshes. This ABC can be applied conformally to the surface of the structure for scattering and antenna radiation calculations. Consequently, the computational domain is reduced dramatically, thus allowing the simulation of much larger structures, and results are presented for three-dimensional bodies. The latter part of the paper discusses optimization issues relating to the solver's CPU speed on parallel and vector processors. It is shown that a jagged diagonal storage scheme leads to a four-fold increase in the FLOP rate of the code, and a standard matrix profile reduction algorithm substantially reduces the inter-processor communication.
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  • 15
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996) 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
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  • 16
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 405-415 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: An improved combined fine-coarse mesh (CFCM) method for two transmission line models of diffusion is described. The method allows regular cells of different sizes to be connected and solved simultaneously. The CFCM method is applied to (a) a finite difference algorithm, (b) a conventional transmission line model and (c) a lossy transmission line model. The latter model is shown to be the most accurate. The proposed CFCM method is also compared with the graded mesh and the multigrid techniques.
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  • 17
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 445-457 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The paper reviews some discrete probabilistic numerical techniques with particular emphasis on heat flow in inhomogeneous materials. The effects of different nodal configurations on the development of suitable algorithms are outlined and we suggest a new and consistent description for the discrete apparent effusivity. Our approach is then discussed in the context of TLM, and analogues are presented for flux relaxation time and effusivity.
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  • 18
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 459-461 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: We show that the general boundary condition D∂Φ/∂x + αΦ = 0 (D is the diffusion coefficient and α is a constant) in TLM diffusion modelling can be expressed accurately in terms of a voltage reflection coefficient ρ = (Δx - αΔt)/(Δx + αΔt), where Δx is the spatial resolution and Δt is the time step. Based on this general expression, the special cases of short-circuit (ρ = -1), open-circuit (ρ = 1) and matched-load (ρ = 0) boundaries can be described succinctly by α → ∞, α → 0 and α = Δx/Δt, respectively. This formulation allows for straightforward treatment of mixed boundary conditions found, for example, in diffusion-drift systems.
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  • 19
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 45-57 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The paper gives an overview on mathematical optimization techniques specially suited to problems in electromagnetism. It is described how efficient optimization procedures consist of decision making, treatment of non-linear constraints, and an algorithm for minimizing the objective function. The optimization of a rectangular waveguide branching, a permanent magnet synchronous machine, and the iron cross-section of a superconducting magnet are given as examples. Optimization routines are used for the tracing of manufacturing errors in the production of superconducting coils. Finally the application of a genetic algorithm to a dipole coil design is discussed as an example for field synthesis.
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  • 20
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 99-113 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Postprocessing encompasses graphic display and numerical computation. The critical process in this work is numerical differentiation. Methods of numerical differentiation of approximate solutions may be divided into three groups: direct numerical differentiation, smoothing methods based on superconvergence properties, and methods that exploit properties the solution is known to possess though the numerical approximation does not. The choice of method is determined by the problem, as well as the use to which derivatives are put: graphical display, local field calculation, mesh refinement or a a posteriori error estimation. The paper compares current derivative extraction methods and reviews progress in this field, with particular attention to superconvergent patch recovery and methods based on Green's second identity. A new modification of the method based on Green's second identity is presented, to include inhomogeneous and discontinuous materials.
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  • 21
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 159-165 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Although software testing comprises a large body of knowledge and is extensively used in verification and validation (V&V) of software and software systems, the need to verify engineering software posses unique challenges. Electromagnetic programs fall under the category of so-called non-testable programs, a group that includes numerical computation and most other programs that use floating point operations. There are, however, certain techniques that can be used to check for program correctness in the context of expected behaviour and results. The approach to testing by multiple methods, multiple codes and multiple algorithms is well known as an effective tool in testing of scientific software. In addition, testing against canonical and known solutions, evaluation of programs based on properties of the computation performed and error analysis are all common techniques used to verify computer programs. Their use in the context of the TEAM series of problems and workshop is used as an example for a unique method of verification of programs and to underscore the needs of both users and program developers in this important issue of code validation.
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  • 22
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 171-179 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: A stability analysis of free running oscillators in the frequency domain is presented. By insertion of a simple damping subnetwork, depending on one parameter, a global stability analysis starting in a Hopf bifurcation is performed. Near the bifurcation, stability of a periodic orbit is determined by studying stability of the stationary solutions. Provided turning and bifurcation points are detected, stability is thus known on the whole path connecting the Hopf bifurcation and the solution of the undamped oscillator network. It is shown that for the generation of starting values for the signal analysis by homotopy and for the stability analysis the same solution path can be utilized. Thus coupling of large-signal and stability analysis leads to an efficient algorithm where stability of oscillatory solutions is computed as a by-product of signal analysis with hardly any additional cost. The presented method is applied to a microwave oscillator at 15 GHz and to an oscillator model which has several coexisting large-signal solutions. Our method may be combined with any large-signal analysis program based on a piecewise network description. It may be fully automated and requires no sophisticated knowledge of the program user about stability analysis or bifurcation theory.
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  • 23
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. ii 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
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  • 24
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 259-270 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The performances of n-tier GaAs MESFET matrix amplifiers are studied in the time domain. The model is developed incorporating the parasitic resistive loss and internal coupling capacitance of the active device. Techniques are contemplated to transform the matrix amplifier into a set of coupled multi-conductor transmission lines. The resultant model is analysed by the TLM method. Impulse responses of 2 × 4 and 3 × 3 matrix amplifiers are investigated. The frequency responses of the amplifiers are obtained through a Fourier transform. Agreement is observed between results obtained by the TLM model and those obtained by other analytical methods or a complicated circuit analysis program. A 5 × 7 matrix amplifier is also analysed to show the advantage of the developed method.
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  • 25
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 321-323 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: By virtue of the success of the transmission line matrix method (TLM) in solving heat and matter diffusion problems, it should also be applicable to the time-dependent Schrödinger equation. The occurrence of complex-valued circuit elements does notdestroy the unconditional stability of the routine. But it seems to be impossible to obtain stationary (eigen)solutions to this equation as well as separable solutions to the diffusion equation. It is suggested that this is due to the non-dissipativity of the TLM routine.
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  • 26
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 295-319 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The solution of Maxwell's equations in the time domain has now been in use for almost three decades and has had great success in many different applications. The main attraction of the time domain approach, originating in a paper by Yee (1966), is its simplicity. Compared with conventional frequency domain methods it takes only marginal effort to write a computer code for solving a simple scattering problem. However, when applying the time domain approach in a general way to arbitrarily complex problems, many seemingly simple additional problems add up. We describe a theoretical framework for solving Maxwell's equations in integral form, resulting in a set of matrix equations, each of which is the discrete analogue to one of the original Maxwell equations. This approach is called Finite Integration Theory and was first developed for frequency domain problems starting about two decades ago. The key point in this formulation is that it can be applied to static, harmonic and time dependent fields, mainly because it is nothing but a computer-compatible reformulation of Maxwell's equations in integral form. When specialised to time domain fields, the method actualy contains Yee's algorithm as a subset. Further additions include lossy materials and fields of moving charges, even including fully relativistic analysis.For amny practical problems the pure time domain algorithm is not sufficient. For instance a waveguide transition analysis requires knowledge of the incoming and outgoing mode patterns for proper excitation in the time domain. This is a typical example where both frequency and time domian analysis are essential and only the combinatin yields the successful result. Typical engineers may wonder why at all one should apply time domain analysis to basically monochromatic field problems. The answer is simple: it is much faster, needs less computer memory, is more general nad typically more accurate. Speed-up factors of over 200 have been reached for realistic problems in filter and waveguide design. The small core space requirement makes time domain methods applicable on desktop computers using milions of cells, and six unknowns per cell - a dimension that has not yet been reached by frequency domain approaches. This enormous amount of mesh cells is absolutely neceesary when complex structures or structures with spacial dimensions of many wavelengths are to be studied. Our personal recod so far is a waveguide problem in which we used 72,000,000 unknowns.
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  • 27
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996) 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
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  • 28
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 327-333 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: An approach of using a current-controlled voltage source analogy to account for a general boundary condition of particle or thermal flux in transmission-line matrix (TLM) diffusion modelling has been developed. For mass diffusion, this boundary condition is expressed as D ∂C/∂x + αC = 0, where C is the concentration, D is the diffusion coefficient, and α is a parameter characterizing the out-diffusion mobility across the boundary of interest. Confirmation of the TLM numerical treatment through comparison with analytical solutions is presented. Besides the open-circuit and short-circuit boundaries, the matched-load boundary is also found to be a special case of the present boundary condition. This extension of the boundary treatment allows the highly flexible TLM method to be applied to a greater variety of diffusion problems.
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  • 29
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    Chichester [u.a.] : Wiley-Blackwell
    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 395-395 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 397-404 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The relationship between common mode rejection and positive and negative power supply rejections of operational amplifiers is derived and compared with symmetrical power supply rejection. The results are used to develop a macromodel which provides a correct representation of the terminal voltages at the op amp pins. The performance of the new macromodel is illustrated comparing simulation results with those of the device level model for the standard integrated circuit op amp uA741.
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  • 31
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 429-443 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: A TLM nodal structure suitable for modelling the propagation of transient stresses is described. The nodal structure is analysed algebraically using the analogy between TLM and discrete state space control theory. A numerical implementation based on this nodal structure is validated by comparing results generated using the TLM model with those produced using the finite difference approach for the case of pressure applied to a semi-infinite plate.
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  • 32
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996) 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
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  • 33
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 3-17 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Algorithms for the numerical solution of continuum electromagnetic field problems are based either on differential or integral formulations. The most common approach, at least for low frequency problems, has been the former, using the finite element method. The paper examines the special advantages of integral equations over differential equations, explores some of the difficulties involved and suggests that, in the context of more advanced problems, i.e. optimization and moving systems, the integral equation approach may be particularly effective.
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  • 34
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 19-34 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Edge-elements are introduced and discussed in the context of complementarity, a desirable characteristic of numerical methods, by which solutions which are equally satisfactory as regards both fields b and h are obtained. By making the vector potential approach easier than with standard nodal elements, edge-elements enhance complementarity. Comparative merits of both kinds of elements are discussed.
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  • 35
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 59-69 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The paper investigates various optimization techniques and their suitability for the magnetic design of electromechanical actuators. Selected algorithms, including Gauss-Newton, Levenberg-Marquardt and Trust region, are examined and compared using 18 test functions. The Levenberg-Marquardt method is chosen for its robustness and fast convergence, and incorporated into an automated CAD optimization system (EAMON), which interfaces an external optimizer to a general purpose finite element package. The EAMON program, which is user friendly with pull-down menus, searches for constrained shape design variables that fulfil prescribed performance criteria. The electromagnetic field analysis forms part of the optimization iterative cycle. Finally, two application examples are described. First, a DC solenoid actuator with truncated cone pole face is optimized to produce a user specified force-displacement characteristic. Secondly, an actuator solenoid is optimized to produce maximum energy per stroke.
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  • 36
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 71-80 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: A review of adaptive methods in 2-D and 3-D for the efficient solution of electromagnetic problems with the finite element method, developed by the authors, is presented in the paper. The adaptive methods presented consist mainly of two processes: mesh refinement and error estimation. A highly efficient technique for the refinement of arbitrary unstructured triangular and tetrahedral meshes, based on Delaunay triangulation, directly applicable and suitable in an automatic adaptive procedure, is described. The use of various error estimation criteria for electromagnetic problems is presented. The implementation of an automatic adaptive procedure with the finite element method, incorporating the above techniques, is provided and applied to the efficient solution of various 2-D and 3-D electromagnetic field problems.
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  • 37
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 115-124 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: The serious electromechanical designer is faced with optimizing the shape of a device for a number of conflicting criteria. If the design involves eddy currents with saturable media, a true optimization will take a long time, since it requires a lot of information as input with multiple variable variations. If the analyses must be performed in three dimensions, an inordinate amount of computer time is required even for the simplest of problems. No small advantage is accrued if the problem can be approached in two dimensions. The paper outlines a technique for examining eddy currents induced in complex series wound coils for which the connections must be specified to ensure solution accuracy. A boundary element formulation is adopted in which an arbitrary constant vector potential is assigned to each conductor. The connection of the coils can be specified by placing additional constraints on these vector potentials. The technique is tested against two experiments involving forces imposed on flux eliminating coils.
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  • 38
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996) 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
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  • 39
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 191-199 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: A simple, approximate, but highly accurate, method is proposed for the analysis of horizontal thin-wire antennas above a lossy half-space. In the first step, the contribution of the lossy half-space to the field of a horizontal Hertzian dipole above the interface, both in the half-space above and in that below the interface, is approximated by the field of few (typically six) equivalent sources (images). The relative image intensities are obtained by enforcing the boundary conditions for the tangential components of the electric and magnetic field at a number of points at the interface. The field of the images is introduced into the Hallén equation; current distribution is approximated by polynomials and determined by point-matching. The results for the impedance of horizontal dipoles obtained by the present method are in excellent agreement with the exact results (obtained from the Sommerfeld theory), although the proposed method is conceptually much simpler and requires at least an order of magnitude less computing time than the exact method.
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  • 40
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 324-324 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: No Abstract
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  • 41
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 345-357 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: We apply a new method of reducing the computational effort required for solution of the Electric Field Integral Equation used for modelling microstrip structures. The Fast Multipole Method is used to compute the radiation pattern and input impedance of single layer microstrip antennas.
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  • 42
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 359-374 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Recently, the simulation of high frequency devices has become of increasing importance due to the demand for faster development processes. The Finite Difference Time Domain (FDTD) method has been proved to be an efficient tool for the simulation of electromagnetic phenomena. In the paper we derive a new consistent three-dimensional subgridding scheme for the Finite Integration Technique. In the time domain the latter method reduces to FDTD when only cubical cells are used. The subgridding extension can help to achieve accurate models of small structure details without heavily decreasing numerical efficiency while the properties of continuous Maxwell equations are still conserved in the grid space. After studying numerical dispersion and stability, the applicability of the method is demonstrated by regarding an example studying scattering at a small post in a rectangular waveguide.
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  • 43
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 375-393 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: A new methodology is presented which allows the integration of lumped elements into electromagnetic simulations, using the TLM method. It is shown that the new method retains the symmetrical condensed node algorithm structure, with the potential to be applied to all lumped elements. A new and accurate method for the extraction of circuit parameters from the impulse response of the TLM method is also presented. The method is simple and can be used for waveguide and planar structures. A study is carried out on the applications of various data windowing techniques during the postprocessing stages of an electromagnetic analysis. This has resulted in the realization of the need for careful selection of a particular window profile, according to the application and the nature of the required results.
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  • 44
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 417-428 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Existing methods for time step control in TLM diffusion modelling that are based on the ‘m’ parameter introduced by Pulko are shown to be inappropriate for problems where the load conditions are arbitrarily time-varying. A new parameter is proposed for monitoring the error in the TLM diffusion model arising from the hyperbolic component of the lossy wave equation. This parameter is used as the controlling variable in a general purpose time step control algorithm and its suitability is demonstrated by applying this algorithm to a number of test cases in which the load conditions are time-varying.
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  • 45
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 462-462 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: No Abstract
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  • 46
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 1-1 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: No Abstract
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  • 47
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    International Journal of Numerical Modelling: Electronic Networks, Devices and Fields 9 (1996), S. 35-44 
    ISSN: 0894-3370
    Keywords: Engineering ; Electrical and Electronics Engineering
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Electrical Engineering, Measurement and Control Technology
    Notes: Automatic electromagnetic device design is now becoming possible. Advances in numerical methods, knowledge-based techniques and database structures are helping to solve the problem of synthesis. The paper discusses the major problems of design and reviews techniques which have been developed for solving them. An architecture for a design system is proposed.
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  • 48
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    Biotechnology and Bioengineering 49 (1996), S. 20-25 
    ISSN: 0006-3592
    Keywords: filamentous fungi ; immobilization ; biofilm bioreactor ; oil emulsion ; degradation ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: A new type of horizontal biofilm bioreactor for continuous bioconversion of emulsified oily substrate by immobilized growing biofilm of filamentous fungi was designed, constructed, and feasibility tested. The new reactor design provides “self”-immobilization of homogenized mycelium leading to even biofilm development. This was accomplished by using stainless steel screens of optimal mesh, mounted in parallel and stretching outward from a main rotating axis of a biological rotating contractor. Each screen was equipped with a pair of stainless steel blades mounted on supports allowing for continuous biofilm “shaving” beyond a predetermined thickness, thus retaining freshly growing active biofilm surface. The feasibility of the new bioreactor was demonstrated by decalactone production from emulsified castor oil by immobilized filamentous fungi (Tyromyces sambuceus). The combination of oriented metal screens and moving blades was found to be highly effective for a model system in maintaining stable substrate emulsion in the reactor in either batchwise or continuous processing, as well as maintaining biofilm thickness with continuous removal of excess growing hyphae. © 1996 John Wiley & Sons, Inc.
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  • 49
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    Biotechnology and Bioengineering 49 (1996), S. 52-62 
    ISSN: 0006-3592
    Keywords: L-phenylacetylcarbinol ; biotransformation ; benzaldehyde ; pyruvate decarboxylase ; Candida utilis ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Biotransformation of benzaldehyde to L-phenylacetylcarbinol (L-PAC) as a key intermediate for L-ephedrine synthesis has been evaluated using pyruvate decarboxylase (PDC) partially purified from Candida utilis. PDC activity was enhanced by controlled fermentative metabolism and pulse feeding of glucose prior to the enzyme purification. With partially purified PDC, several enzymatic reactions occurred simultaneously and gave rise to by-products (acetaldehyde and acetoin) as well as L-PAC production. Optimal reaction conditions were determined for temperature, pH, addition of ethanol, PDC activity, benzaldehyde, and pyruvate:benzaldehyde ratio to maximize L-PAC, and minimize by-products. The highest L-PAC concentration of 28.6 g/L (190.6 mM) was achieved at 7 U/mL PDC activity and 200 mM benzaldehyde with 2.0 molar ratio of pyruvate to benzaldehyde in 40 mM potassium phosphate buffer (pH 7.0) containing 2.0 M ethanol at 4°C. © 1996 John Wiley & Sons, Inc.
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  • 50
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    Biotechnology and Bioengineering 49 (1996), S. 87-92 
    ISSN: 0006-3592
    Keywords: protease ; lipase ; activation ; anhydrous media ; denaturing organic solvents ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The rates of transesterification reactions catalyzed by the protease subtilisin Carlsberg suspended in various anhydrous solvents at 30°C can be increased more than 100-fold by the addition of denaturing organic cosolvents (dimethyl sulfoxide or formamide); in water, the same cosolvents exert no enzyme activation. At 4°C, the activation effect on the lyophilized protease is even higher, reaching 1000-fold. Marked enhancement of enzymatic activity in anhydrous solvents by formamide is also observed for two other enzymes, α-chymotrypsin and Rhizomucor miehei lipase, and is manifested in two transesterification reactions. In addition to lyophilized subtilisin, crosslinked crystals of subtilisin are also amenable to the dramatic activation by the denaturing cosolvents. In contrast, subtilisin solubilized in anhydrous media by covalent modification with poly(ethylene glycol) exhibits only modest activation. These observations are rationalized in terms of a mechanistic hypothesis based on an enhanced protein flexibility in anhydrous millieu brought about by the denaturing organic cosolvents. The latter exert their lubricating effect largely at the interfaces between enzyme molecules in a solid preparation, thus easing the flexibility constraints imposed by protein-protein contacts. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 93-100 
    ISSN: 0006-3592
    Keywords: disinfection ; chlorine ; transport ; gel bead ; biofilm ; reaction-diffusion ; Pseudomonas aeruginosa ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: An artificial biofilm system consisting of Pseudomonas aeruginosa entrapped in alginate and agarose beads was used to demonstrate transport limitation of the rate of disinfection of entrapped bacteria by chlorine. Alginate gel beads with or without entrapped bacteria consumed chlorine. The specific rate of chlorine consumption increased with increasing cell loading in the gel beads and decreased with increasing bead radius. The value of an observable modulus comparing the rates of reaction and diffusion ranged from less than 0.1 to 8 depending on the bead radius and cell density. The observable modulus was largest for large (3-mm-diameter) beads with high cell loading (1.8 × 109 cfu/cm3) and smallest for small beads (0.5 mm diameter) with no cells added. A chlorine microelectrode was used to measure chlorine concentration profiles in agarose beads (3.0 mm diameter). Chlorine fully penetrated cell-free agarose beads rapidly; the concentration of chlorine at the bead center reached 50% of the bulk concentration within approximately 10 min after immersion in chlorine solution. When alginate and bacteria were incorporated into an agarose bead, pronounced chlorine concentration gradients persisted within the gel bead. Chlorine did gradually penetrate the bead, but at a greatly retarded rate; the time to reach 50% of the bulk concentration at the bead center was approximately 46 h. The overall rate of disinfection of entrapped bacteria was strongly dependent on cell density and bead radius. Small beads with low initial cell loading (0.5 mm diameter, 1.1 × 107 cfu/cm3) experienced rapid killing; viable cells could not be detected (〈1.6 × 105 cfu/cm3) after 15 min of treatment in 2.5 mg/L chlorine. In contrast, the number of viable cells in larger beads with a higher initial cell density (3.0 mm diameter, 2.2 × 109 cfu/cm3) decreased only about 20% after 6 h of treatment in the same solution. Spatially nonuniform killing of bacteria within the beads was demonstrated by measuring the transient release of viable cells during dissolution of the beads. Bacteria were killed preferentially near the bead surface. Experimental results were consistent with transport limitation of the penetration of chlorine into the artificial biofilm arising from a reaction-diffusion interaction. The methods reported here provide tools for diagnosing the mechanism of biofilm resistance to reactive antimicrobial agents in such applications as the treatment of drinking and cooling waters. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 139-150 
    ISSN: 0006-3592
    Keywords: Vitreoscilla hemoglobin ; flux analysis ; dose response ; microaerobic metabolism ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The amount of Vitreoscilla hemoglobin (VHb) expression was modulated over a broad range with an isopropyl-β-D-thiogalactopyranoside- (IPTG-) inducible plasmid, and the consequences on microaerobic Escherichia coli physiology were examined in glucose fed-batch cultivations. The effect of IPTG induction on growth under oxygen-limited conditions was most visible during late fed-batch phase where the final cell density increased initially linearly with increasing VHb concentrations, ultimately saturating at a 2.7-fold increase over the VHb-negative (Vhb-) control. During the same growth phase, the specific excretions of fermentation by-products, acetate, ethanol, formate, lactate, and succinate from the culture expressing the highest amount of VHb were reduced by 25%, 49%, 68%, 72%, and 50%, respectively, relative to the VHb- control. During the exponential growth phase, VHb exerted a positive but smaller control on growth rate, growth yield, and respiration. Varying the amount of VHb from 0 to 3.8 μmol/g dry cell weight (DCW) increased the specific growth rate, the growth yield, and the oxygen consumption rate by 33%, 35%, and 60%, respectively. Increasing VHb concentration to 3.8 μmol/g DCW suppressed the rate of carbon dioxide evolution in the exponential phase by 30%. A metabolic flux distribution analysis incorporating data from these cultivations discloses that VHb+ cells direct a larger fraction of glucose toward the pentose phosphate pathway and a smaller fraction of carbon through the tricarboxylic acid cycle from acetyl coenzyme A. The overall nicotinamide adenine dinucleotide [NAD(P)H] flux balance indicates that VHb-expressing cells generate a net NADH flux by the NADH/NADPH transhydrogenase while the VHb- cells yield a net NADPH flux under the same growth conditions. Flux distribution analysis also reveals that VHb+ cells have a smaller adenosine triphosphate (ATP) synthesis rate from substrate-level phosphorylation but a larger overall ATP production rate under microaerobic conditions. The thermodynamic efficiency of growth, based on reducing equivalents generated per unit of biomass produced, is greater for VHb+ cells. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 197-203 
    ISSN: 0006-3592
    Keywords: catalytic bioreactor ; multistage tower ; pilot plant ; alcohol ; fixed bed ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: This article describes the development of an industrial-scale, multistage fixed-bed tower (MFBT) bioreactor using the promoter mineral kissiris for industrial alcohol production using free cells. Specifically, we examined the parameters needed to maintain operational stability from batch to batch for long periods. Pilot plant operations used one- and two-stage fixed-bed, 7000-L bioreactors. Likewise a 100,000-L, multistage fixed-bed tower system containing layered kissiris confirmed the laboratory results. Compared with a continuous stirred tank fermentor (CSTF) with recycle, a 30% reduction of energy demand and 10%-20% of the production costs are obtained. The latter are attributed to the increased ethanol concentration and alcohol productivity. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 223-227 
    ISSN: 0006-3592
    Keywords: immobilized cells ; diffusivity measurement ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: A simple correlation method has been developed to predict effective diffusivities of small molecules in heterogeneous materials such as immobilized cell systems. This correlation uses a single diffusivity measurement at one cell volume fraction to predict diffusivities for any other volume fraction of cell. The method has been applied to 20 sets of published diffusivity measurements in immobilized cell systems and accurately predicts affective diffusivities of molecules for the full range of cell fractions. It may also be used to predict effective diffusivities in heterogeneous materials in which the diffusivity of a molecule in each phase and the volume fraction of each phase are known. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 266-276 
    ISSN: 0006-3592
    Keywords: Aspergillus oryzae ; submerged growth ; morphology ; pellet formation ; protein production ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The microscopic morphology, that is, total hyphal length and total number of tips, has been characterized during batch cultivations of Aspergillus oryzae. The specific growth rate estimated by measuring the total hyphal length (μh) corresponds well with the specific growth rate estimated from dry weight measurements during cultures grown as free hyphal elements. The average tip extension rate can be described with a saturation type kinetics with respect to the average total hyphal length, and the branching frequency is closely related to the total hyphal length. For the applied strain of A. oryzae, pellet formation occurs by coagulation of spores. The agglomeration process is pH dependent and pellets are formed at pH values higher than 5, whereas low pH (〈3.5) results in growth as freely dispersed hyphal elements. The maximum specific growth rate has a broad pH optimum between 3 and 7, whereas the α-amylase production has a sharper maximum at about pH 6. During batch cultivation with pellets the growth is described well by the cube-root law when pellet fragmentation can be neglected. The kinetic parameter k in the cube-root law is derived from the growth kinetics with no mass transfer limitation, k = μh/3. Based on an oxygen balance, the active growth layer in the pellet is estimated to be 200 to 325 μm and, consequently, up to 50% of the biomass is limited by oxygen for large pellets. Ethanol production (up to 1 g L-1) was observed during batch cultivations with pellets, suggesting that ethanol is produced in the oxygen limited part of the biomass. A constitutive, low α-amylase production was observed at high glucose concentration. The specific α-amylase production was significantly higher for filamentous growth than for pellets and oxygen appears to be necessary for production of α-amylase. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 300-308 
    ISSN: 0006-3592
    Keywords: hydrophobicity ; proteins, modified ; partitioning in aqueous system ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Two different series of hydrophobically modified proteins were partitioned in a number of aqueous two-phase systems (ATPS) to investigate the effect of hydrophobicity as a single property on partitioning. The modified proteins were derived from β-lactoglobulin and bovine serum albumin (BSA). Measurement of the surface hydrophobicity of the proteins is important; hydrophobic interaction chromatography (HIC) was used for this purpose. The resolution of the systems (R) in terms of protein surface hydrophobicity and the intrinsic hydrophobicity (log P0) of the systems was established. The effect of the addition of NaCl to PEG/phosphate and PEG/dextran systems was analyzed in terms of the hydrophobicity difference between the phases and their ability to promote hydrophobic interactions between the protein surface and the PEG molecules. The values for R and log P0 differed somewhat depending on which group of modified proteins was used for partitioning. The addition of NaCl to PEG/phosphate systems promoted an increase in the values of R, showing an important effect on the resolution of the systems for protein surface hydrophobicity (twice as high when compared with systems without NaCl). For PEG/dextran systems, the addition of 9% NaCl (w/w) promoted an improvement in the resolution toward surface hydrophobicity with an increase of 60% on the value of R. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996) 
    ISSN: 0006-3592
    Keywords: Chemistry ; Biochemistry and Biotechnology
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  • 58
    ISSN: 0006-3592
    Keywords: trypsin ; immobilization ; molded support ; poly(glycidyl methacrylate-co-ethylene dimethacrylate) ; porous materials ; affinity chromatography ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Trypsin immobilization onto continuous “molded” rods of porous poly(glycidyl methacrylate-co-ethylene dimethacrylate) and some applications of the conjugate have been studied. The rods polymerized within a tubular mold (chromatographic column), were treated in situ with ethylenediamine, activated with glutaraldehyde and finally modified with trypsin. The performance of the trypsin-modified rods was evaluated and compared to that of poly(glycidyl methacrylate-co-ethylene dimethacrylate) beads, modified with the same enzyme. Overall the enzyme-modified rods performed substantially better than the corresponding beads. In particular, the performance of the molded supports as enzymatic reactors or as chromatographic media benefits greatly from the enhanced mass transfer that is characteristic of the molded rod at high flow rates. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 391-398 
    ISSN: 0006-3592
    Keywords: phenol gaseous emissions ; biofiltration ; Pseudomonas putida ; elimination capacity ; deodorization ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The macro-kinetic behavior of phenol removal from a synthetic exhaust gas was investigated theoretically as well as experimentally by means of two identical continuously operating laboratory-scale biological filter bed columns. A mixture of peat and glass beads was used as filter material. After sterilization it was inoculated with a pure strain of Pseudomonas putida, as employed in previous experimental studies. To determine the influence of the superficial gas flow rate on biofilter performance and to evaluate the phenol concentration profiles along the column, two series of continuous tests were carried out varying either the inlet phenol concentration, up to 1650 mg · m-3, or the superficial gas flow rate, from 30 to 460 m3 · m-2 · h-1. The elimination capacity of the biofilter is proved by a maximum volumetric phenol removal rate of 0.73 kg · m-3 · h-1. The experimental results are consistent with a biofilm model incorporating first-order substrate elimination kinetics. The model may be considered a useful tool in scaling-up a biofiltration system. Furthermore, the deodorization capacity of the biofilter was investigated, at inlet phenol concentrations up to 280 mg · m-3 and superficial gas flow rates ranging from 30 to 92 m3 · m-2 · h-1. The deodorization of the gas was achieved at a maximum inlet phenol concentration of about 255 mg · m-3, operating at a superficial gas flow rate of 30 m3 · m-2 · h-1. © 1996 John Wiley & Sons, Inc.
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    Keywords: Escherichia coli ; acetate ; protein, recombinant ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Notes: Two Escherichia coli strains, widely used for the production of various recombinant proteins, were compared for their pre-induction growth and acetate accumulation patterns. The strains studied were E. coli BL21 (λDE3), transformed with a plasmid encoding Pseudomonas exotoxin A, and an E. coli K12 derived strain, JM109, carrying a plasmid encoding maltose-binding protein fused with HIV protease. Cultures were grown in controlled bench-top fermentors to the optimal pre-induction density in both high glucose batch and low glucose fed batch strategies. The results showed the superiority of E. coli BL21 (λDE3) as a host for a recombinant protein expression system. For example, JM109 responds differently to high glucose concentration and to low glucose concentration. Its acetate concentration was as high as 10 g/L in a batch mode and 5 g/L in a fed batch mode. In comparison, strain BL21 (λDE3) reached 2 g/L acetate when grown in batch mode and not more than 1 g/L acetate when grown in a fed batch mode. E. coli BL21 (λDE3), most likely, possesses an acetate self-control mechanism which makes it possible to grow to the desired pre-induction density in a high glucose medium using simple batch propagation techniques. Such a technique is cost effective, reproducible, and easy to scale up. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 456-466 
    ISSN: 0006-3592
    Keywords: microcarrier culture ; turbulent mixing ; 3-D particle tracking ; energy dissipation ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Three-dimensional particle tracking velocimetry (3-D PTV), a modern, quantitative, visualization tool, has been applied to the characterization of the flow field in the impeller region of cell culture reactor vessels. The experimental system used here is a 250-mL microcarrier spinner vessel. The studies were conducted at three different agitation rates, 90, 150, and 210 rpm, corresponding to healthy, mildly damaging, and severely damaging shear intensities, respectively. The flow can be classified into three regions: a predominantly tangential (azimuthal) flow generated by the impeller; a trailing vortex region coming off the impeller tip; and a converging flow region close to the center of the vessel. The latter two are the regions of highest velocity gradients. Energy dissipation rates due to mean velocity gradients were also calculated to characterize the impeller stream. Local specific energy dissipation rates 〉 10,000 erg/(cm3sec) · have been measured. It is proposed that the critical regions for microcarrier culture damage due to impeller hydrodynamics are the trailing vortex region and the high energy converging flow region. Graphical representation of the mean velocity flow fields and the distribution of energy dissipation rates in the impeller region are also presented here. The merits of using the dissipation function (measure of specific energy dissipation rate) as a possible scale-up parameter are also discussed. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 473-479 
    ISSN: 0006-3592
    Keywords: INU signal peptide ; MFα1 leader peptide ; secretion ; human lipocortin-1 ; human interleukin-2 ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The INU genes of Kluyveromyces marxianus encode inulinases which are readily secreted from Saccharomyces cerevisiae into the culture medium. To evaluate the utility of the INU signal peptides for the secretion of heterologous proteins from S. cerevisiae, a variety of expression and secretion vectors were constructed with GAL10 promoter and GAL7 terminator. The coding sequence for human lipocortin-1 (LC1) was inserted in-frame with the INU signal sequences, and then the secretion efficiency and localization of LC1 were investigated in more detail and compared with those when being expressed by the vector with the MFα1 leader peptide. The vector systems with INU signal peptides secreted ca. 95% of the total LC1 expressed into the extracellular medium, while the MFα1 leader peptide-containing vector resulted in very low secretion efficiency below 10%. In addition, recombinant human interleukin-2 (IL-2) was expressed and secreted with the vector systems with INU signal peptide, and a majority fraction of the human IL-2 expressed was found to be secreted into the extracellular medium as observed in LC1 expression. © 1995 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 512-526 
    ISSN: 0006-3592
    Keywords: expanded bed adsorption ; ion exchange purification ; processing time ; productivity ; protein purification ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: A strategy for the optimization of an expanded bed adsorption process has been developed by studying a model system involving the adsorption of lysozyme onto the adsorbent STREAMLINE SP. The hydrodynamic and adsorption properties of this ion exchange adsorbent in a variety of viscosities of feedstocks have been compared by analyzing bed expansion characteristics, liquid phase dispersion characteristics, equilibrium adsorption isotherms, and mass transfer characteristics. Additionally, the influences of the degree of bed expansion on adsorption performance have been investigated by frontal analysis. In these experiments, viscous feedstocks were simulated by the inclusion of glycerol in the adsorption buffers. Breakthrough curves for lysozyme were characterized and compared in terms of overall purification processing time and productivity. On the basis of these results, the relative productivities of different operating modes with the same process liquid were found to be almost the same. However, the processing time for each purification cycle decreased with increasing velocity of process liquid. It is demonstrated that an adsorption process carried out at a constant degree of bed expansion (twice its settled bed height, corresponding to bed voidage of 0.7) is more efficient, when characterized by the apparent dynamic binding capacity, than operation at a constant liquid velocity of 300 cm/h. These results have significant implications on the design and operation of the expanded bed adsorption procedures. The advantages and problems encountered in the use of expanded bed techniques for the direct extraction of proteins from unclarified feedstocks are also discussed. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 559-567 
    ISSN: 0006-3592
    Keywords: Acrosiphonia ; macroalgae ; tissue culture ; stirred-tank bioreactor ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
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    Notes: A semidifferentiated tissue culture consisting of linear filaments in liquid suspension was established from Acrosiphonia coalita, a cold-water green macroalga known to express pharmacologically active oxylipins deriving from lipoxygenase metabolism of linolenic acid. The tissue was vegatively propagated by blending the filaments down to 1 to 5 mm in length prior to subculture. The filamentous A. coalita tissue suspension was successfully cultivated in an illuminated, 3-L stirred-tank bioreactor at 12°C, 0.46-vvm aeration rate, 250-rpm mixing speed, and incident illumination intensity of 77 μE m-2s-1. The mean specific growth rate over the exponential phase was 0.185 day-1 and a final cell density of 1083 mg dry cell weight (DCW) L-1 was achieved within 15 days of cultivation from an initial cell density of 200 mg DCW L-1. The addition of 3500 ppm CO2 to the aeration gas provided a maximum CO2 transfer rate of six times the maximum CO2 consumption rate and stabilized the pH to 8.0 during the light phase of growth, but did not improve biomass productivity. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996) 
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    Keywords: Chemistry ; Biochemistry and Biotechnology
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    Biotechnology and Bioengineering 49 (1996), S. 629-638 
    ISSN: 0006-3592
    Keywords: biosorption ; Ascophyllum nodosum ; cadmium ; copper ; zinc ; three-metal system ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Equilibrium metal uptake performance of a biosorbent prepared from Ascophyllum nodosum seaweed biomass was studied using aqueous solutions containing copper, cadmium, and zinc ions in binary and ternary mixtures. Triangular equilibrium diagrams can graphically represent all the ternary equilibrium sorption data. Application of the multicomponent Langmuir model to describe the three-metal system revealed its nonideal characteristics, whereby the value of apparent dissociation constants for the respective metals differed for each system. This restricted the prediction of the ternary equilibria from the binary systems. However, some predictions of the ternary system behavior from the model were consistent with experimental data and with conclusions postulated from the three possible binary subsystems. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 667-674 
    ISSN: 0006-3592
    Keywords: yeast ; threonine biosynthesis ; gene amplification ; amino acid production ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: In this work, we have studied the effect of amplifying different alleles involved in the threonine biosynthesis on the amino acid production by Saccharomyces cerevisiae. The genes used were wild-type HOM3, HOM2, HOM6, THR1, and THR4, and two mutant alleles of HOM3 (namely HOM3-R2 and HOM3-R6), that code for feedback-insensitive aspartate kinases. The results show that only the amplification of the HOM3 alleles leads to threonine and, in some instances, to homoserine overproduction. In terms of the regulation of the pathway, the data indicate that the main control is exerted by inhibition of the aspartate kinase and that, probably, a second and less important regulation takes place at the level of the homoserine kinase, the THR1 gene product. However, amplification of THR1 in two related Hom3-R2 strains does not increase the amount of threonine but, in one of them, it does induce accumulation of more homoserine. This result probably reflects differences between these strains in some undetermined genetic factor/s related with threonine metabolism. In general, the data indicate that the common laboratory yeast strains are genetically rather heterogeneous and, thus, extrapolation of conclusions must be done carefully. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 49 (1996), S. 690-699 
    ISSN: 0006-3592
    Keywords: cofactor responses ; dual limitation ; nicotinamide adenine dinucleotide ; phosphorylation potential ; metabolic control ; Pseudomonas putida ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The highly systematic responses of cellular cofactors to controlled substrate limitations of electron donor, electron acceptor, and both (dual limitation) were quantified using continuous-flow cultures of Pseudomonas putida. The results showed that the NADH concentration in the cells decreased gradually as the specific rate of electron-donor utilization (-qd) fell or increased systematically as oxygen limitation became more severe for fixed -qd, while the NAD concentration was invariant. The NAD(H) responses demonstrated a common strategy; compensation for a low concentration of an externally supplied substrate by increasing (or decreasing) the concentration of its internal cosubstrate (or coproduct). The compensation was dramatic, as the NAD/NADH ratio showed a 24-fold modulation in response to depletion of dissolved oxygen (DO) or acetate. In the dual-limitation region, the compensating effects toward depletion of one substrate were damped, because the other substrate was simultaneously at low concentration. However, the NAD(H) responses minimized the adverse impact from substrate depletion on overall cell metabolism. Cellular contents of ATP, ADP, and Pi were mostly affected by -qd, such that the phosphorylation potential, ATP/ADP · Pi, increased as -qd fell due to depletion of acetate, DO, or both. Since the respiration rate should be slowed by high ATP/ADP · Pi, the cellular response seems to amplify an unfavorable environmental condition when oxygen is depleted. The likely reason for this apparent disadvantageous response is that the response of phosphorylation potential is more keenly associated with other aspects of metabolic control, such as for synthesis, which requires Pi for production of phospholipids and nucleotides. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 1-5 
    ISSN: 0006-3592
    Keywords: lipase ; interfacial activation ; organic solvents ; adsorption ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The question of whether lipases can be activated by adsorption onto an interface in organic solvents was addressed using Rhizomucor miehei lipase as a model. In aqueous solution, this enzyme was shown to undergo a marked interfacial activation. However, lipase (either lyophilized or precipitated from water with acetone) suspended in ethanol or 2-(2-ethoxyethoxy)ethanol containing triolein exhibited no jump in catalytic activity when the concentration of triolein exceeded its solubility in these solvents, thereby resulting in formation of an interface. To test whether the lack of interfacial activation was due to the insolubility of the enzyme in organic media, lipase was covalently modified with poly(ethylene glycol). The modified lipase, although soluble in nonaqueous media, was still unable to undergo interfacial activation, regardless of the hydrophobicity of the interface. This inability was found to be caused by the absence of adsorption of lipase onto interfaces in organic solvents, presumably because of the absence of the hydrophobic effect (the driving force of lipase adsorption onto hydrophobic interfaces in water) in such media. The uncovered lack of interfacial adsorption and activation suggests that the short α-helical “lid” covering the active center of the lipase remains predominantly closed in nonaqueous media, thus contributing to diminished enzymatic activity. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 49-56 
    ISSN: 0006-3592
    Keywords: Bacillus amyloliquefaciens α-amylase ; Bacillus licheniformis α-amylase ; Bacillus subtilis α-amylase ; thermostability and pressure stability ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Three different α-amylases from Bacillus subtilis, B. amyloliquefaciens, and B. licheniformis, were mutually compared with respect to thermal stability, pressure stability, and combined pressure-temperature stability. Measurements of residual enzyme activity and residual denaturation enthalpy showed that the α-amylase from B. licheniformis has by far the highest thermostability and that the two other α-amylases have thermostabilities of the same order of magnitude. FTIR spectroscopy showed that changes in the conformation of the α-amylases from B. amyloliquefaciens, B. subtilis, and B. licheniformis due to pressure occurred at about 6.5, 7.5, and 11 kbar, respectively. It seemed that, for the enzymes studied, thermal stability was correlated with pressure stability. As to the resistance under combined heat and high pressure, the α-amylase from B. licheniformis was much more stable than the α-amylases from B. amyloliquefaciens and B. subtilis, the latter two being about equally stable. It appears that under high pressure and/or temperature, B. licheniformis α-amylase is the most resistant among the three enzymes studied. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 91-97 
    ISSN: 0006-3592
    Keywords: waste-gas treatment ; trickle-bed reactor ; fungi ; biofilm ; toluene ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Removal of organic compounds like toluene from waste gases with a trickle-bed reactor can result in clogging of the reactor due to the formation of an excessive amount of biomass. We therefore limited the amount of nutrients available for growth, to prevent clogging of the reactor. As a consequence of this nutrient limitation a lower removal rate was observed. However, when a fungal culture was used to inoculate the reactor, the toluene removal rate under nutrient limiting conditions was higher. Over a period of 375 days, an average removal rate of 27 g C/(m3 h) was obtained with the reactor inoculated with the fungal culture. From the carbon balance over the reactor and the nitrogen availability it was concluded that, under these nutrient-limited conditions, large amounts of carbohydrates are probably formed. We also studied the application of a NaOH wash to remove excess biomass, as a method to prevent clogging. Under these conditions an average toluene removal rate of 35 g C/(m3 h) was obtained. After about 50 days there was no net increase in the biomass content of the reactor. The amount of biomass which was formed in the reactor equaled the amount removed by the NaOH wash. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 115-124 
    ISSN: 0006-3592
    Keywords: anaerobic degradation ; granulation ; plug-flow ; sludge, thermophilic ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The characteristics and development of thermophilic anaerobic sludge in upflow staged sludge bed (USSB) reactors were studied. The compartmentalized reactors were inoculated with partially crushed mesophilic granular sludge and then fed with either a mixture of volatile fatty acids (VFA) or a mixture of sucrose and VFA. The staged degradation of the soluble substrate in the various compartments led to a clear segregation of specific types of biomass along the height of the reactor, particularly in reactors fed with the sucrose-VFA mixture. Both the biological as well as the physical properties of the cultivated sludge were affected by the fraction of nonacidified substrate. The sludge in the first compartment of the reactor treating the sucrose-VFA mixture was whitish and fluffy, most likely resulting from the development of acidifying bacteria. Sludge granules which developed in the top part of this reactor possessed the highest acetogenic and methanogenic activity and the highest granule strength as well. The experiments also revealed that the conversion of the sucrose-VFA mixture into methane gradually deteriorated at prolonged operation at high organic loading rates (50 to 100 g COD · L-1 · day-1). Stable long-term performance of a reactor can only be achieved by preserving the sludge segregation along the height of the reactor. In the reactor fed solely with the VFA mixture little formation of granular sludge occurred. In this reactor, large differences in sludge characteristics were also observed along the reactor height. Li+-tracer experiments indicated that the hydraulic regime in the USSB reactor is best characterized by a series of at least five completely mixed reactors. The formation of granular sludge was found to influence the liquid flow pattern. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 151-168 
    ISSN: 0006-3592
    Keywords: avidin ; liposomes ; aggregation kinetics ; biotin ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The aggregation of biotin-modified phospholipid vesicles (liposomes) induced by binding the protein avidin in solution is analyzed experimentally and theoretically. Avidin has four binding sites that can recognize biotin specifically, and is able to cross-link the liposomes to form large aggregates. The aggregation kinetics were followed using quasi-elastic light scattering (QLS) to measure the mean particle size, and by measuring the solution turbidity. The rate and extent of aggregation were determined as a function of vesicle concentration, protein concentration, and the biotin density on the surface of the liposomes. A model based on Smoluchowski kinetics, fractal concepts, and Rayleigh and Mie light scattering theory was developed to analyze the experimental observations. Small aggregates (〈7800 Å diameter) may be treated as globular; however, the fractal nature of larger particles must be taken into account. Parameters in the model are taken from molecular simulations, or fit to the experimental observations. The aggregation kinetics are primarily determined by the biotin density on the liposome surface, the stoichiometric ratio of avidin molecules to liposomes, and the liposome concentration. Good agreement is found between the model and the experimental results. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 203-206 
    ISSN: 0006-3592
    Keywords: protein extraction ; reverse micelle ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The reverse micellar system of sodium bis(2-ethylhexyl) phosphate (NaDEHP)/isooctane/brine was used for liquid-liquid extraction of proteins. We investigated the solubilization of cytochrome-c and α-chymotrypsin into the NaDEHP reverse micellar phase by varying the pH and NaCl concentration in the aqueous phase. At neutral pH and relatively low ionic strength, the proteins are extracted into the micellar phase with high yield. By contacting the micellar phase with a divalent cation (e.g., Ca2+) aqueous solution, the reverse micelles are destabilized and release the protein molecules back into an aqueous solution for recovery. This method separates the proteins from the surfactant with very high overall efficiencies. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 228-228 
    ISSN: 0006-3592
    Keywords: Chemistry ; Biochemistry and Biotechnology
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    Biotechnology and Bioengineering 50 (1996), S. 229-237 
    ISSN: 0006-3592
    Keywords: cell cycle analysis ; foreign gene expression ; MMTV promoter control ; recombinant mouse cells ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The cell cycle dependency of foreign gene expression in recombinant mouse L cells was investigated. Two different recombinant mouse L cell lines having the glucocorticoid receptor-encoding gene and the lacZ reporter gene were used in this study. The lacZ gene expression was controlled by the glucocorticoid-inducible mouse mammary tumor virus (MMTV) promoter in both cell lines. In “M4” cells the gr gene was under the control of another MMTV promoter, but in “R2” cells it was under the control of the constitutive Rous sarcoma virus promoter. These normally attachment-grown cells were adapted to suspension culture, and a dual-laser flow cytometer was used to simultaneously determine the DNA and foreign protein (β-galactosidase) content of single living cells. Expression of β-galactosidase as a function of cell cycle phase was evaluated for cells in exponential growth without any addition of the glucocorticoid inducer, dexamethasone. Cell cycle positions in the S phase were estimated on the basis of DNA content per cell, and position in the G1 phase was estimated on the basis of cell size as measured by pulse-width time of flight. The results showed that β-galactosidase synthesis occurred through all cell cycle phases, but the expression rate in the G1 phase was much lower than that in the S and G2/M phases in both cell lines. On the basis of cell size analysis, β-galactosidase expression in M4 cells (with autoinducible promoter) was found to be higher than that in R2 cells (with inducible promoter) during the G1 phase. © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 280-290 
    ISSN: 0006-3592
    Keywords: extractive fermentation ; poly(ethyleneimine) ; aqueous two-phase system ; lactic acid ; Lactococcus lactis ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The potential of an aqueous two-phase system composed of a polycation, poly(ethyleneimine) (PEI), and an uncharged polymer, (hydroxyethyl) cellulose (HEC), for extractive lactic acid fermentation was tested. Batch fermentation with 20 g/L glucose in two-phase medium using Lactococcus lactis without external pH control resulted in 3-4 times higher amount of lactate and biomass produced as compared to that in a conventional one-phase medium. Lactic acid was preferentially partitioned to the PEI-rich bottom phase. However, the cells which favored the HEC-rich top phase in a fresh two-phase medium were partitioned to a significant extent to the bottom phase after fermentation. Addition of phosphate buffer or pH adjustment to 6.5 after fermentation caused fewer cells to move to the bottom phase. With external pH control, fermentation in normal and two-phase medium showed no marked differences in glucose consumption and lactic acid yield, except that about 1.3 times higher cell density was obtained in the two-phase broth, especially at initial glucose concentrations of 50-100 g/L. Use of higher concentration of phosphate during batch fermentation in the two-phase medium with 50 g/L sugar provided a 15% higher yield of lactic acid, but the growth rate of cells was nearly half of the normal, thus affecting the productivity. Continuous fermentation with twice the normal phosphate concentration resulted in higher cell density, product yield, and productivity in two-phase medium than in monophasic medium. © 1996 John Wiley & Sons, Inc.
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  • 78
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    Biotechnology and Bioengineering 50 (1996), S. 329-335 
    ISSN: 0006-3592
    Keywords: active-site titration ; serine proteases ; organic solvents ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Calculation of kinetic constants of an enzymatic reaction in organic solvents requires knowledge of the functional active-site concentration in organic solvents, and this can be significantly different than that in water. An experimental method for active-site titration of serine proteases in organic media has been developed based on the kinetics of inhibition by phenylmethanesulfonyl fluoride (PMSF), a serine-specific inhibitor (or suicide substrate). This kinetic approach is fundamentally different from other techniques that require complete titration of all accessible enzyme active sites. This active site titration method was applied to subtilisins BPN′ and Carlsberg and α-chymotrypsin and resulted in fractions of active sites that ranged from 8 to 62% (of the fraction active in water) depending on the enzyme, the method of enzyme preparation, and the organic solvent used. The active-site concentration of subtilisin BPN′ and Carlsberg increased with increasing hydrophobicity of the solvent and with increasing solvent hydration in tetrahydrofuran. The dependence of the fraction of active sites on the nature of the organic solvent appears to be governed largely by solvent-induced inactivation caused by direct interaction of a hydrophilic solvent with the enzyme. © 1996 John Wiley & Sons, Inc.
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  • 79
    ISSN: 0006-3592
    Keywords: metabolic flux ; hybridoma cells ; mass balances ; biosynthesis ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The estimation of the intracellular fluxes of mammalian cells using only the mass balances of the relevant metabolites is not possible because the set of linear equations defined by these mass balances is underdetermined. Either additional experimental flux data or additional theoretical constraints are required to find one unique flux distribution out of the solution space that is bound by the mass balances. Here, a method is developed using the latter approach. The uptake and production rates of amino acids, glucose, lactate, O2, CO2, NH4, MAB, and the intracellular amino acid pools have been determined for two different steady-states. The cellular composition {total protein and protein composition, total lipids and fatty acid distribution, total carbohydrates, DNA and RNA} has been measured to calculate the requirements for biosynthesis. It is shown to be essential to determine the uptake/production rates of ammonia and either carbon dioxide or oxygen. In mammalian cells these are cometabolites of cyclic metabolic pathways. The flux distribution that is found using the Euclidean minimum norm as the additional theoretical constraint and taking either the CO2 or the NAD(P)H mass balance into account is shown to be in agreement with the measured O2 and CO2 metabolic rates.The metabolic fluxes in hybridoma cells in continuous culture at a specific growth rate of 0.83 day-1 are estimated for a medium with (optimal medium) and without (suboptimal medium) Primatone RL, an enzymatic hydrolysate of animal tissue that causes a more than twofold increase in cell density. It is concluded that (i)The majority of the consumed glucose (〉90%) is channeled through the pentose-phosphate pathway in rapidly proliferating cells.(ii)Pyruvate oxidation and tricarboxylic acid (TCA) cycle activity are relatively low, i.e., 8% of the glucose uptake in suboptimal and 14% in optimal medium, respectively. Under both conditions, only a small fraction of pyruvate is further oxidized to CO2.(iii)The flux from glutamate to α-ketoglutarate (catalyzed by glutamate dehydrogenase) is almost zero in medium with and even slightly reversed in medium without Primatone RL. Almost all glutamate enters the TCA cycle due to the action of transaminases.(iv)Transhydrogenation plays a significant role in hybridoma cells under our experimental conditions. NADPH is produced at relatively high rates (11 × 10-12 to 13 × 10-12 mol · cell-1 · day-1) compared to other fluxes in both culture media. © 1996 John Wiley & Sons, Inc.
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  • 80
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    Biotechnology and Bioengineering 50 (1996), S. 357-364 
    ISSN: 0006-3592
    Keywords: hydrogel ; cell immobilization ; surface adhesion ; matrix entrapment ; microencapsulation ; immunoisolation ; bioartificial organs ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Hydrogels are being investigated for mammalian cell immobilization. Their material properties can be engineered for biocompatibility, selective permeability, mechanical and chemical stability, and other requirements as specified by the application including uniform cell distribution and a given membrane thickness or mechanical strength. These aqueous gels are attractive for analytical and tissue engineering applications and can be used with immobilization in therapies for various diseases as well as to generate bioartificial organs. Recent advances have broadened the use of hydrogel cell immobilization in biomedical fields. To provide an overview of available technology, this review surveys the current developments in immobilization of mammalian cells in hydrogels. Discussions cover hydrogel requirements for use in adhesion, matrix entrapment, and microencapsulation, the respective processing methods, as well as current applications. © 1996 John Wiley & Sons, Inc.
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  • 81
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    Biotechnology and Bioengineering 50 (1996), S. 374-381 
    ISSN: 0006-3592
    Keywords: hydrogel ; stability ; gel strength ; diffusion ; alginate ; agarose ; encapsulation ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The present studies were undertaken to evaluate the in vitro gel stability of the hydrogels alginate and agarose. Gel strength (of alginate and agarose) and protein diffusion (of alginate only) were shown to correlate with gel stability and to be useful techniques to monitor gel stability over time. The gel strengths of alginate and agarose were followed for a 90-day period using gel strength as a measure of gel stability. The gel strength of agarose diminished in the presence of cells because the cells likely interfered with the hydrogen bond formation required for agarose gelation. In the presence of cells, the gel strength of agarose decreased by an average of 25% from time 0 to 60 days, thereafter maintaining that value to 90 days. The gel strength of calcium- or barium-crosslinked alginate decreased over 90 days, with an equilibrium gel strength being achieved after 30 days. The presence of cells did not further decrease alginate gel strength. The gel strengths of calcium- and barium-crosslinked alginates were similar at 60 days - 350 ± 20 g and 300 ± 60 g, respectively - indicating equivalence in their stability. The stability of calcium-crosslinked sodium alginate gels over a 60-day time period was monitored by diffusion of proteins ranging in molecular weight from 14.5 to 155 kD. From these diffusion measurements, the average pore size of the calcium-crosslinked alginate gels was estimated, using a semi-empirical model, to increase from ∼176 to 289 Å over a period of 60 days. © 1996 John Wiley & Sons, Inc.
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  • 82
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    Biotechnology and Bioengineering 50 (1996), S. 404-415 
    ISSN: 0006-3592
    Keywords: hepatocyte ; spheroids ; tissue engineering ; bioartificial liver ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Freshly harvested primary rat hepatocytes cultivated as multicellular aggregates, or spheroids, have been observed to exhibit enhanced liver-specific function and differentiated morphology compared to cells cultured as monolayers. An efficient method of forming spheroids in spinner vessels is described. Within 24 h after inoculation, greater than 80% of inoculated cells formed spheroids. This efficiency was significantly greater than that reported previously for formation in stationary petri dishes. With a high specific oxygen uptake rate of 2.0 × 10-9 mmol O2/cell/h, the oxygen supply is critical and should be monitored for successful formation. Throughout a 6-day culture period, spheroids assembled in spinner cultures maintained a high viability and produced albumin and urea at constant rates. Transmission electron microscopy indicated extensive cell-cell contacts and tight junctions between cells within spheroids. Microvilli-lined bile canaliculus-like channels were observed in the interior of spheroids and appeared to access the exterior through pores at the outer surface. Spheroids from spinner cultures exhibited at least the level of liver-specific activity as well as similar morphology and ultrastructure compared to spheroids formed in stationary petri dishes. Hepatocytes cultured as spheroids are potentially useful three-dimensional cell systems for application in a bioartificial liver device and for studying xenobiotic drug metabolism. © 1996 John Wiley & Sons, Inc.
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  • 83
    ISSN: 0006-3592
    Keywords: hepatocytes ; transplantation ; polylactic acid ; drug delivery ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Hepatocyte transplantation may provide a new approach for treating a variety of liver diseases if a sufficient number of the transplanted cells survive over an extended time period. In this report, we describe a technique to deliver growth factors to transplanted hepatocytes to improve their engraftment. Epidermal growth factor (EGF) was incorporated (0.11%) into microspheres (19 ± 12 μm) fabricated from a copolymer of lactic and glycolic acid using a double emulsion technique. The incorporated EGF was steadily released over 1 month in vitro, and it remained biologically active, as determined by its ability to stimulate DNA synthesis, cell division, and long-term survival of cultured hepatocytes. EGF-containing microspheres were mixed with a suspension of hepatocytes, seeded onto porous sponges, and implanted into the mesentery of two groups of Lewis rats. The first group of animals had their portal vein shunted to the inferior vena cava prior to cell transplantation (portal-caval shunt = PCS), and the second group of animals did not (non-PCS). This surgical procedure improves the survival of transplanted hepatocytes. The engraftment of transplanted hepatocytes in PCS animals was increased two-fold by adding EGF microspheres, as compared to adding control microspheres that contained no growth factors. Devices implanted into non-PCS animals had fewer engrafted hepatocytes than devices implanted into PCS animals, regardless of whether blank or EGF-containing microspheres were added. These results first indicate that it is possible to design systems which can alter the microenvironment of transplanted hepatocytes to improve their engraftment. They also suggest that hepatocyte engraftment is not improved by providing single growth factors unless the correct environment (PCS) is provided for the transplanted cells. © 1996 John Wiley & Sons, Inc.
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  • 84
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    Biotechnology and Bioengineering 50 (1996), S. 347-348 
    ISSN: 0006-3592
    Keywords: Chemistry ; Biochemistry and Biotechnology
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  • 85
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    Biotechnology and Bioengineering 50 (1996), S. 465-478 
    ISSN: 0006-3592
    Keywords: hematopoietic stem cells ; quiescence ; self-renewal ; multilineage potential ; single cell culture ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: We have developed methods for detailed characterization of the proliferation kinetics and lineage potential of single human hematopoietic progenitor cells in an in vitro culture system. Fetal bone marrow CD34hi/lin- cells were cultured at one cell per well in the presence of c-kit ligand (KL), interleukin (IL)-3, IL-6, and leukemia inhibitory factor (LIF) on a murine stroma cell monolayer. Individual wells were scored for growth between 1 and 10 weeks of culture and analyzed by flow cytometry for lineage composition. A wide variation in time (1 to 8 weeks) was observed before initial cell division, even in the presence of cytokines promoting cell division in primitive progenitors. Eleven percent of the plated cells eventually produced a confluent culture well of approximately 20,000 progeny. Confluent wells were harvested and individually analyzed by flow cytometry for cell surface phenotype. Forty-eight percent of confluent wells contained primitive progenitors (CD34+lin-), 16% contained B-lymphoid cells (CD19+ or CD10+), and 100% contained cells committed to the myelo-erythroid lineage (CD33+). CD34+/lin- cells from confluent wells were replated at one cell per well in secondary culture and the analysis repeated. One of 216 original single cells plated produced populations of B-lymphoid cells, myeloid cells, and primitive progenitors (CD34+/lin-) which persisted through two expansion cycles. We estimate that more than 36 million cells can be produced from a single cell under these culture conditions. A very small percentage of the CD34hi/lin- population (about 1%) was responsible for the majority of subsequent cell production. Our estimate of stem cell content in fetal bone marrow, defined by self-renewal as well as both B-lymphoid and myeloid differentiation from one cell, is approximately 1/13,000. This assay system provides direct in vitro measurements of the expected characteristics of hematopoietic stem cells (high proliferation potential, multilineage potential, self-renewal, and quiescence), and is therefore well suited to assessment of stem cell activity within various cell populations. © 1996 John Wiley & Sons, Inc.
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  • 86
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    Biotechnology and Bioengineering 50 (1996), S. 479-492 
    ISSN: 0006-3592
    Keywords: stem cell ; bioreactor ; stromal layer ; Graetz number ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Tissue function is comprised of a complex interplay between biological and physicochemical rate processes. The design of bioreactors for tissue engineering must account for these processes simultaneously in order to obtain a bioreactor that provides a uniform environment for tissue growth and development. In the present study we consider the effects of fluid flow and mass transfer on the growth of a tissue in a parallel-plate bioreactor configuration. The parenchymal cells grow on a preformed stromal (feeder) layer that secretes a growth factor that stimulates parenchymal stem cell replication and differentiation. The biological dynamics are described by a unilineage model that describes the replication and differentiation of the tissue stem cell. The physicochemical rates are described by the Navier-Stokes and convective-diffusion equations. The model equations are solved by a finite element method. Two dimensionless groups govern the behavior of the solution. One is the Graetz number (Gz) that describes the relative rates of convection and diffusion, and the other a new dimensionless ratio (designated by P) that describes the interplay of the growth factor production, diffusion, and stimulation. Four geometries (slab, gondola, diamond, and radial shapes) for the parallel-plate bioreactor are analyzed. The uniformity of cell growth is measured by a two-dimensional coefficient of variance. The concentration distribution of the stroma-derived growth factor was computed first based on fluid flow and bioreactor geometry. Then the concomitant cell density distribution was obtained by integrating the calculated growth factor concentration with the parenchymal cell growth and unilineage differentiation process. The spatiotemporal cell growth patterns in four different bioreactor configurations were investigated under a variety of combinations of Gz (10-1, 100, and 101) and P(10-2, 10-1, 100, 101, and 102). The results indicate high cell density and uniformity can be achieved for parameter values of P = 0.01, …, 0.1 and Gz = 0.1, …, 1.0. Among the four geometries investigated the radial-flow-type bioreactor provides the most uniform environment in which parenchymal cells can grow and differentiate ex vivo due to the absence of walls that are parallel to the flow paths creating slow flowing regions. © 1996 John Wiley & Sons, Inc.
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  • 87
    ISSN: 0006-3592
    Keywords: perfusion chamber ; bone marrow stroma ; mononuclear cell cultures ; hematopoietic cultures ; cell retention ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Perfusion and static cultures of peripheral blood (PB) mononuclear cells (MNCs), obtained from patients following stem cell mobilization, were supplemented with interleukin-3 (IL-3), IL-6, granulocyte colony-stimulating factor (G-CSF), and stem cell factor (SCF) and compared with and without a preformed irradiated allogeneic bone marrow stromal layer. Perfusion cultures without a stromal layer effectively retained nonadherent cells through the use of a novel “grooved” perfusion chamber, which was designed with minimal mass transfer barriers in order to achieve a well-defined culture environment. The grooved chamber allowed easy and efficient culture inoculation and cell recovery. Average maximum expansion of CFU-GM (colony-forming unit granulocyte-macrophage) cells was observed on day 10 for all cultures. Perfusion cultures had a maximum CFU-GM expansion of 17- and 19-fold with and without a stromal layer, respectively. In contrast, static cultures had a maximum CFU-GM expansion of 18- and 13-fold with and without a stromal layer, respectively. Average long-term-culture initiating cell (LTC-IC) numbers on day 15 were 34% and 64% of input in stroma-containing and stroma-free perfusion cultures and 12% and 11% of input in stroma-containing and stroma-free static cultures, respectively. Thus, perfusion enhanced CFU-GM expansion and LTC-IC maintenance more for the stroma-free cultures than for stroma-containing cultures. This was surprising because analysis of medium supernatants indicated that the stroma-containing cultures were metabolically more active than the stroma-free cultures. In view of their equivalent, if not superior, performance compared to stroma-containing cultures, stroma-free perfusion cultures may offer significant advantages for potential clinical applications. © 1996 John Wiley & Sons, Inc.
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  • 88
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    Biotechnology and Bioengineering 50 (1996), S. 521-528 
    ISSN: 0006-3592
    Keywords: HIV ; cytotoxic T lymphocytes (CTL) ; serum ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The ex vivo expansion of antigen-specific cytotoxic T lymphocyte (CTL) lines is being developed for immunotherapy of viral infections and cancer and is critically dependent on the precise cell expansion and stimulation conditions. In this article, we investigate medium requirements for the development of HIV-specific CTL in cell lines generated from the peripheral blood of seven asymptomatic HIV-infected individuals. We find that HIV-specific CTL do not readily develop in the serum-free medium AIM V but do develop if the medium is supplemented with 1% plasma or serum. T cell lines with antigen-specific cytolytic activity express more cell-surface CD57 than do cell lines grown in the absence of serum or plasma. Three sources of serum (human autologous, human AB, or fetal calf) are comparable. Human plasma is somewhat less effective than serum from an identical source. © 1996 John Wiley & Sons, Inc.
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  • 89
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    Biotechnology and Bioengineering 50 (1996), S. 548-554 
    ISSN: 0006-3592
    Keywords: fluorescence ; transfection ; liposome ; flow cytometry ; plasmid ; cell cycle ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Cationic liposomes are potentially important gene transfer vehicles, capable of conjugating with anionic DNA by condensation. Flow cytometry was used to examine quantitatively the incorporation of DNA-liposome complex into murine capillary lung endothelial cells. The plasmid DNA, a pSV-β-galactosidase vector, was covalently labeled with ethidium monoazide by photoactivation. The cationic liposome consisted of egg phosphatidylcholine (90%), cholesterol (5%), and stearylamine (5%). The number of plasmid molecules contained within each cell as a function of exposure time was estimated from fluorescence intensity. Fluorescently labeled plasmid is detectable after 10 min and increases with continued exposure, but at a decreasing rate, up to 2160 min. After 2160 min each cell, on average, contains approximately 10,000 plasmid molecules. Following transfection, a single cell unimodal population was detected by flow cytometry, suggesting that all cells participate in transfection equally. Furthermore, cell cycle analysis indicates that the entry of DNA-liposome complex is independent of cell cycle. © 1996 John Wiley & Sons, Inc.
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  • 90
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    Biotechnology and Bioengineering 50 (1996), S. 580-586 
    ISSN: 0006-3592
    Keywords: tissue engineering ; N1E-115 neuroblastoma cells ; electrophysiological differentiation ; retinoid cytotoxicity ; teratogenesis ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The cytotoxic effects of retinoids on neuroblastoma cells at various times during electrophysiological differentiation were evaluated. We used N1E-115, a clone of the murine neuroblastoma C1300 derived from the neural crest, and three retinoids: vitamin A (retinol), all-trans retinoic acid (tretinoin), and 13-cis-retinoic acid (isotretinoin). Differentiating N1E-115 cells exposed to retinoids at an isotretinoin EC50 of 16 μM exhibited the greatest vulnerability in terms of cell death during a period (8 to 10 days) that was previously found to be the most sensitive for induction of gross malformations in rodents. This finding suggested possible similarities between the in vivo and in vitro retinoid mechanism(s) of action. The greatest period of vulnerability to retinoid cytotoxicity was also found to coincide with the rapid resting membrane potential (Vm) development period, suggesting a linkage between neuronal Vm and/or electrical excitability development and vulnerability to retinoid cytotoxicity. © 1996 John Wiley & Sons, Inc.
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  • 91
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    Biotechnology and Bioengineering 50 (1996), S. 587-597 
    ISSN: 0006-3592
    Keywords: prostate carcinoma cells ; HARV ; simulated microgravity ; three-dimensional culture ; morphology ; cytoskeletal proteins ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The high aspect rotating-wall vessel (HARV) was recently designed by NASA to cultivate animal cells in an environment that simulates microgravity. This work examines the effects of HARV cultivation on DU 145 human prostate carcinoma cells. In the HARV, these prostate cells grew in suspension on Cytodex-3 microcarrier beads to form bead aggregates with extensive three-dimensional growth between beads and on the aggregate surface. HARV and spinner-flask control cultures of DU 145 cells had similar doubling times, but the former was characterized by a higher percentage of G1-phase cells, larger bead aggregates, enhanced development of filopodia and microvilli-like structures on the aggregate surface, and stronger staining for select cytoskeletal proteins (cytokeratins 8 and 18, actin, and vimentin). When compared with static controls grown in a T-flask and Transwell insert, HARV cultures grew more slowly and differences in the cell cycle and immunostaining became more pronounced. These results suggest that HARV cultivation produced a culture that was less aggressive from the perspective of proliferation, more differentiated and less pliant than any of the three control cultures examined in this work. Possible factors effecting this change are discussed including turbulence and three-dimensional growth. © 1996 John Wiley & Sons, Inc.
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  • 92
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    Biotechnology and Bioengineering 50 (1996), S. 617-626 
    ISSN: 0006-3592
    Keywords: aqueous two-phase systems ; protein concentration ; physico-chemical properties ; phase saturation correlations ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The effect of protein concentration in partitioning in PEG/salt aqueous two-phase systems has been investigated. PEG 4000/phosphate systems in the presence of 0% w/w and 8.8% w/w NaCl have been evaluated using amyloglucosidase, subtilisin, and trypsin inhibitor. Also, a PEG 4000/phosphate system with 3% w/w NaCl was used for α-amylase. The concentration of the protein in each of the phases affected its partition behavior. The pattern for the individual proteins was dependent on their physicochemical properties. In the top phase, maximum protein concentration was determined mainly by a steric exclusion effect of PEG, and hydrophobic interaction between PEG and proteins. In the bottom phase, maximum concentration was determined mainly by a salting-out effect of the salts present. As the ionic strength was increased in the systems the concentration in the top phase increased for all proteins. In the bottom phase an increase in ionic strength increased the salting-out effect. Amyloglucosidase had a very low maximum concentration in the PEG-rich top phase which was probably due to its large size (steric exclusion) and low hydrophobicity, and a high concentration in the salt-rich bottom phase due to its high hydrophilicity. In the case of subtilisin and trypsin inhibitor, their high concentrations in the top phase were due to their hydrophobic nature (hydrophobic interaction with PEG) and small size (negligible steric exclusion). The maximum concentration in the bottom phase for trypsin inhibitor was lower than that of subtilisin which was probably due to its higher hydrophobicity and, hence, a stronger salting-out effect. The protein concentration in each of the two phases was correlated with a “saturation”-type equation. The partition coefficient could be satisfactorily predicted, as a function of the overall protein concentration, by the ratio between the “saturation” equations of the two individual phases. Better correlations were obtained when an empirical sigmoidal Boltzmann equation was fitted to the data, since in virtually all cases the partition coefficient is constant at low protein concentration (true partitioning) and changes to a different constant value at a high overall protein concentration. © 1996 John Wiley & Sons, Inc.
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  • 93
    ISSN: 0006-3592
    Keywords: horseradish peroxidase ; peroxide ; kinetics ; inactivation ; suicide substrate ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Horseradish peroxidase (HRP) is a commercially important enzyme that is available from a number of supply houses in a variety of grades of purity and isoenzymic combinations. The present article describes a comparative study made on nine HRP preparations. Six of these samples were predominantly composed of basic HRP, pl 8.5, and three of acidic HRP, pl 3.5. Two of the basic preparations were of lower purity than the others. The apparent molar catalytic activity of basic HRP with 0.5 mMABTS and 0.2 mM H2O2 was around 950 s-1 (about 770 s-1 for the less pure samples) and with a 5 mM guaiacol and 0.6 mM H2O2 was about 180 s-1 for all the samples. A similar value (approximately 1000 s-1) was observed for acidic HRP but only at higher concentrations of ABTS (20 mM). With 20 mM guaiacol the molar catalytic activity of the acid isoenzyme was 65 s-1. The apparent KM for ABTS of the acidic isoenzyme was 4 mM whereas for the basic isoenzyme it was 0.1 mM. All the enzymes were inactivated by H2O2 when it was supplied as the only substrate. Under these conditions the partition ratio (r = number of catalytic cycles given by the enzyme before its inactivation), apparent dissociation constant (Kl), and apparent rate constant of inactivation (kinact) were about twice as large for the acidic samples (1350, 2.6 mM, 9 · 10-3 s-1) as for the basic (650, 1.3 mM, 5 · 10-3 s-1). The apparent catalytic constant (kcat) was 3-4 times larger, and the efficiency of catalysis (kcat/Kl) was double for the acidic isoenzyme, but the efficiency of inactivation (kinact/Kl) was similar. The data obtained provide useful information for those using HRP isoenzymes for biotechnological applications (e.g., biosensors, bioreactors, or assays). © 1996 John Wiley & Sons, Inc.
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    Biotechnology and Bioengineering 50 (1996), S. 675-686 
    ISSN: 0006-3592
    Keywords: biofilm ; steady state ; heterotrophs ; nitrosomonas ; nitrobacter ; model ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Through a thorough investigation of the boundary conditions for a general two-species biofilm model, a simple and fast method for solving the steady-state case is developed and presented. The methods used may be extended to biofilm models in which more than two species are considered. Four different sets of boundary conditions are possible for the two-species biofilm model. Each set is shown to be asymptotically stable. A biofilm model describing the competition between autotrophic and heterotrophic bacteria and a biofilm model considering only Nitrosomonas and Nitrobacter are used for illustration. A parameter Lcrit, critical film thickness for bacterial coexistence, is introduced from which criteria on the bulk concentrations for coexistence are derived. From these criteria it is seen that the thinner the biofilm, the more restrictive the conditions are for steady-state coexistence. For thin biofilms there may, in many cases, be no point in considering more than one species in the biofilm model. Furthermore, the gradients of the bacterial concentrations are in many cases negligible in thin biofilms, and the biofilm may then be assumed to be homogeneous. The criteria on the bulk concentrations together with the four sets of boundary conditions provide the necessary information for a direct solution of the steady-state two-species biofilm model by means of an ordinary differential and algebraic equation solver. © 1996 John Wiley & Sons, Inc.
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  • 95
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 50 (1996), S. 693-699 
    ISSN: 0006-3592
    Keywords: batch reactor ; Monod kinetic coefficient ; parameter estimation ; phenanthrene ; volatile hydrophobic substrate ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: A new procedure is presented to determine Monod kinetic coefficients and the microbial yield coefficient for volatile hydrophobic compounds such as phenanthrene. Batch experiments were conducted with a mixed culture capable of degrading phenanthrene. The phenanthrene disappearance and carbon dioxide production were monitored with time. A maximum likelihood estimator was formulated to fit the set of equations that describe the system to the measured data. The model takes into account a number of processes such as partition onto the apparatus, volatilization, and partition onto the biomass. The parameters required to describe these processes were obtained by independent experiments. The yield coefficient could be determined within a small range. However, the specific growth rate and the half-saturation constant were found to vary widely, with pairs of them describing the system adequately. It was shown that partition and volatilization processes can significantly affect the determination of the yield and Monod kinetic coefficients and need to be taken into account. © 1996 John Wiley & Sons, Inc.
    Additional Material: 10 Ill.
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  • 96
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 51 (1996), S. 1-14 
    ISSN: 0006-3592
    Keywords: biodegradation ; desorption ; mathematical model ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: A mathematical model to describe polynuclear aromatic hydrocarbon (PAH) desorption, transport, and biodegradation in saturated soil was constructed by describing kinetics at a microscopic level and incorporating this description into macroscale transport equations. This approach is novel in that the macroscale predictions are made independently from a knowledge of microscale kinetics and macroscopic fluid dynamics and no adjustable parameters are used to fit the macroscopic response. It was assumed that soil organic matter, the principal site of PAH sorption, was composed of a continuum of compartments with a gamma distribution of desorption rate coefficients. The mass transport of substrates and microorganisms in a mesopore was described by diffusion and that in a macropore by one-dimensional advection and dispersion. Naphthalene was considered as a test PAH compound for initial model simulations. Three mechanisms of naphthalene biodegradation were considered: growth-associated degradation as a carbon and energy source for microbial growth; degradation for maintenance energy; and growth-independent degradation. The Haldane modification of the Monod equation was used to describe microbial growth rates and to account for possible growth inhibition by naphthalene. Multisubstrate interactions were considered and described with a noninteractive model for specific growth rates. The sensitivity of selected model parameters was analyzed under conditions when naphthalene was the sole growth-rate-limiting substrate. The time necessary to achieve a specific degree of naphthalene biodegradation was found to be proportional to the initial concentration of naphthalene in soil organic matter. The biodegradation rate of naphthalene increased when the sorption equilibrium constant of naphthalene was reduced. The presence of an alternative carbon source inhibited naphthalene biodegradation in spite of the calculated increase in biomass. © 1996 John Wiley & Sons, Inc.
    Additional Material: 12 Ill.
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  • 97
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 51 (1996), S. 15-22 
    ISSN: 0006-3592
    Keywords: preparative separation ; continuous ; free-flow zone electrophoresis ; electrophoretic mobility ; net charge ; enzymes ; proteins ; crude extract ; cell debris ; Candida boidinii ; Escherichia coli ; formate dehydrogenase ; formaldehyde dehydrogenase ; methanol oxidase ; β-galactosidase ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Continuous, single-step, state-of-the-art preparative separations of enzymes from microorganism crude extracts by free-flow zone electrophoresis are presented. In the first example, the enzymes formate dehydrogenase, formaldehyde dehydrogenase, and methanol oxidase were continuously separated from Candida boidinii crude extract. Yields of 85% to 95% and purification factors between 3 and 7 were obtained along with a simultaneous separation of the finer cell debris from the enzymes. Using multiple injections of sample, a throughput of 46.2 mg protein/h was recorded. In the second example, a fivefold purification of β-galactosidase from Escherichia coli was achieved along with complete, simultaneous cell debris separation from the enzyme. The yield of the enzyme was greater than 90%. The preparative free-flow zone electrophoresis experiments were run continuously for a period of 12 h and the separations were found to be stable; i.e., the enzymes and the cell debris eluted at their respective fraction numbers during the entire period. In both examples, choice of the type of buffer played a critical role and had to be investigated and optimized experimentally. Scale-up aspects of the separations are also discussed. Recently, by comparison of free-flow zone electrophoresis with ion-exchange chromatography, we have presented evidence that free-flow electrophoresis separations are governed by net surface charge (S. Nath et al., Biotechnol. Bioeng. 1993, 42: 829-835). Here, we offer further confirmation of this evidence by comparison of preparative free-flow zone electrophoresis experiments at various pHs on a mixture of two model proteins with analytical electrophoretic titration curves of the proteins. We are thus in a position to predict separations in free-flow zone electrophoresis. © 1996 John Wiley & Sons, Inc.
    Additional Material: 8 Ill.
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  • 98
    ISSN: 0006-3592
    Keywords: chemostat culture ; mutants, colonial ; Fusarium graminearum A3/5 ; periodic selection ; mycoprotein ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: At pH 5.8, highly branched (colonial) mutants appear in glucose-limited chemostat cultures of Fusarium graminearum A3/5 after ca. 400 h (ca. 107 generations) of growth. The appearance of these mutants was delayed by up to 144 h (45 generations) when the culture was switched at intervals of 120 h between pH 4.8 and 6.6. The concentration of cycloheximide-resistant macroconidia in the culture was used as an indicator of the periodic selection of advantageous mutants and it was found that, in chemostat populations subjected to pH oscillations, the interval (210 ± 20 h) between peaks was nearly double that observed in chemostat populations cultured at constant pH (124 ± 12 h at constant pH 5.8 and 120 h ± 17 h at constant pH 4.5), indicating that the population evolved more slowly under oscillating pH than under constant pH. When grown in mixed culture with the parental strain (A3/5), the selective advantage of two colonial mutants isolated from chemostat cultures grown under conditions of oscillating pH was found to be pH dependent. Compared to cultures grown at constant pH 5.8, a delay of ca. 312 h (87 generations) in the appearance of colonial mutants was observed when F. graminearum A3/5 was grown in glucose-limited chemostat culture at constant pH 4.5. © 1996 John Wiley & Sons, Inc.
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  • 99
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 51 (1996), S. 131-140 
    ISSN: 0006-3592
    Keywords: mixing power ; convection ; fermentation ; bioreactor ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: The phenomena of mixing and mass transfer of substrates to microorganisms greatly affect the biochemical reactions which take place in fermentation processes. The effect that agitation power has on the observable reaction kinetics involved in beer fermentation has been studied in different types of bioreactors, from laboratory to industrial scale. With this aim in mind, an effectiveness factor, η, is introduced which is defined as the relation between the existing rate of reaction, whichever bioreactor is considered, and the reaction rate in the well-mixed, and therefore presumably homogeneous, bioreactor with no diffusional limits. The limitation to homogeneously supplying nutrient material to the cells produces a decrease in this effectiveness factor, which has been correlated to the energy dissipation rate with a similar slope to that which appears in an existing correlation in the literature between this energy and the mass transfer coefficient. Additionally, a dimensionless reaction-convection number, NRC, which is a function of the power input per unit volume, is proposed, which has been appropriately employed in correlating the effectiveness factor for the types of processes in which convection may be the key resistance factor. © 1996 John Wiley & Sons, Inc.
    Additional Material: 10 Ill.
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  • 100
    Electronic Resource
    Electronic Resource
    New York, NY [u.a.] : Wiley-Blackwell
    Biotechnology and Bioengineering 51 (1996), S. 163-167 
    ISSN: 0006-3592
    Keywords: alternate adsorption ; multienzyme film ; sequential enzymatic reaction ; glucose oxidase ; peroxidase ; Chemistry ; Biochemistry and Biotechnology
    Source: Wiley InterScience Backfile Collection 1832-2000
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: Molecular films of protein/polyion layers were assembled by means of alternate adsorption through electrostatic interaction. Glucose oxidase (GOD) and peroxidase (POD) were assembled in combination with sodium poly(styrenesulfonate) (PSS) and poly(ethyleneimine) (PEI), respectively. Enzyme activities of those films on specific substrates (glucose and H2O2) were examined by coloring reaction of dye DA67. A multienzyme film containing GOD layer and POD layer was prepared by alternate adsorption of POD/PSS followed by PEI/GOD. Sequential redox reaction of glucose/H2O2/DA67 was demonstrated successfully with this supramolecular system. © 1996 John Wiley & Sons, Inc.
    Additional Material: 5 Ill.
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