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  • 1
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    Simulated leakage of high pCO2 water negatively impacts bivalve dominated infaunal communities from the Western Baltic Sea (2016)
    Nature Publishing Group
    In:  EPIC3Scientific Reports, Nature Publishing Group, 6(31447)
    Details
    Publication Date: 2016-11-24
    Description: Carbon capture and storage is promoted as a mitigation method counteracting the increase of atmospheric CO2 levels. However, at this stage, environmental consequences of potential CO2 leakage from sub-seabed storage sites are still largely unknown. In a 3-month-long mesocosm experiment, this study assessed the impact of elevated pCO2 levels (1,500 to 24,400 µatm) on Cerastoderma edule dominated benthic communities from the Baltic Sea. Mortality of C. edule was significantly increased in the highest treatment (24,400 µatm) and exceeded 50%. Furthermore, mortality of small size classes (0-1 cm) was significantly increased in treatment levels ≥6,600 µatm. First signs of external shell dissolution became visible at ≥1,500 µatm, holes were observed at 〉6,600 µatm. C. edule body condition decreased significantly at all treatment levels (1,500-24,400 µatm). Dominant meiofauna taxa remained unaffected in abundance. Densities of calcifying meiofauna taxa (i.e. Gastropoda and Ostracoda) decreased in high CO2 treatments (〉6,600 µatm), while the non - calcifying Gastrotricha significantly increased in abundance at 24,400 µatm. In addition, microbial community composition was altered at the highest pCO2 level. We conclude that strong CO2 leakage can alter benthic infauna community composition at multiple trophic levels, likely due to high mortality of the dominant macrofauna species C. edule.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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  • 2
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    Scaling-up permafrost thermal measurements in western Alaska using an ecotype approach (2016)
    Copernicus
    In:  EPIC3The Cryosphere, Copernicus, 10(5), pp. 2517-2532, ISSN: 1994-0424
    Details
    Publication Date: 2020-09-06
    Description: Permafrost temperatures are increasing in Alaska due to climate change and in some cases permafrost is thawing and degrading. In areas where degradation has already occurred the effects can be dramatic, resulting in changing ecosystems, carbon release, and damage to infrastructure. However, in many areas we lack baseline data, such as subsurface temperatures, needed to assess future changes and potential risk areas. Besides climate, the physical properties of the vegetation cover and subsurface material have a major influence on the thermal state of permafrost. These properties are often directly related to the type of ecosystem overlaying permafrost. In this paper we demonstrate that classifying the landscape into general ecotypes is an effective way to scale up permafrost thermal data collected from field monitoring sites. Additionally, we find that within some ecotypes the absence of a moss layer is indicative of the absence of near-surface permafrost. As a proof of concept, we used the ground temperature data collected from the field sites to recode an ecotype land cover map into a map of mean annual ground temperature ranges at 1 m depth based on analysis and clustering of observed thermal regimes. The map should be useful for decision making with respect to land use and understanding how the landscape might change under future climate scenarios.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , peerRev
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  • 3
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    Presence of rapidly degrading permafrost plateaus in south-central Alaska (2016)
    Copernicus
    In:  EPIC3The Cryosphere, Copernicus, 10(6), pp. 2673-2692, ISSN: 1994-0424
    Details
    Publication Date: 2016-11-16
    Description: Permafrost presence is determined by a complex interaction of climatic, topographic, and ecological conditions operating over long time scales. In particular, vegetation and organic layer characteristics may act to protect permafrost in regions with a mean annual air temperature (MAAT) above 0°C. In this study, we document the presence of residual permafrost plateaus in the western Kenai Peninsula lowlands of south-central Alaska, a region with a MAAT of 1.5+/-1 °C (1981–2010). Continuous ground temperature measurements between 16 September 2012 and 15 September 2015, using calibrated thermistor strings, documented the presence of warm permafrost (-0.04 to -0.08 °C). Field measurements (probing) on several plateau features during the fall of 2015 showed that the depth to the permafrost table averaged 1.48m but at some locations was as shallow as 0.53 m. Late winter surveys (augering, coring, and GPR) in 2016 showed that the average seasonally frozen ground thickness was 0.45 m, overlying a talik above the permafrost table. Measured permafrost thickness ranged from 0.33 to 〉6.90 m. Manual interpretation of historic aerial photography acquired in 1950 indicates that residual permafrost plateaus covered 920 ha as mapped across portions of four wetland complexes encompassing 4810 ha. However, between 1950 and ca. 2010, permafrost plateau extent decreased by 60.0 %, with lateral feature degradation accounting for 85.0% of the reduction in area. Permafrost loss on the Kenai Peninsula is likely associated with a warming climate, wildfires that remove the protective forest and organic layer cover, groundwater flow at depth, and lateral heat transfer from wetland surface waters in the summer. Better understanding the resilience and vulnerability of ecosystem-protected permafrost is critical for mapping and predicting future permafrost extent and degradation across all permafrost regions that are currently warming. Further work should focus on reconstructing permafrost history in south-central Alaska as well as additional contemporary observations of these ecosystem-protected permafrost sites south of the regions with relatively stable permafrost.
    Repository Name: EPIC Alfred Wegener Institut
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  • 4
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    Seismic footprints of shallow dyke propagation at Etna, Italy (2016)
    Nature Publishing Group
    Details
    Publication Date: 2017-04-04
    Description: One of the key issues in forecasting volcanic eruptions is to detect signals that can track the propagation of dykes towards the surface. Continuous monitoring of active volcanoes helps significantly in achieving this goal. The seismic data presented here are unique, as they document surface faulting processes close (tens to a few hundred meters) to their source, namely the dyke tip. They originated nearby - and under - a seismic station that was subsequently destroyed by lava flows during eruptive activity at Etna volcano, Italy, in 2013. On February 20, a ~600 m-long and ~120 m wide NW-SE fracture field opened at an altitude between 2750 and 2900 m. The consequent rock dislocation caused the station to tilt and offset the seismic signal temporarily. Data acquisition continued until the arrival of the lava flow that led to the breakdown of the transmission system. Shallow ground fracturing and repeated low-frequency oscillations occurred during two stages in which the seismic signal underwent a maximum offset ~2.57 E+04 nm/s. Bridging instrumental recordings, fieldwork and conceptual modelling, these data are interpreted as the seismic footprints of a magmatic dyke intrusion that moved at speed ~0.02 m/s (first stage) and 0.46 m/s (second stage).
    Description: This work was supported by the MED-SUV project, which has received funding from the European Union’s Seventh Programme for research, technological development and demonstration under grant agreement No 308665.
    Description: Published
    Description: 11908
    Description: 2V. Dinamiche di unrest e scenari pre-eruttivi
    Description: JCR Journal
    Description: restricted
    Keywords: dyke propagation ; Etna ; seismic signals ; ground fracturing ; conceptual modelling ; 04. Solid Earth::04.06. Seismology::04.06.08. Volcano seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
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    Annual Acoustic Presence of Fin Whale (Balaenoptera physalus) Offshore Eastern Sicily, Central Mediterranean Sea (2016)
    Public Library of Science
    Details
    Publication Date: 2017-04-04
    Description: In recent years, an increasing number of surveys have definitively confirmed the seasonal presence of fin whales (Balaenoptera physalus) in highly productive regions of the Mediterranean Sea. Despite this, very little is yet known about the routes that the species seasonally follows within the Mediterranean basin and, particularly, in the Ionian area. The present study assesses for the first time fin whale acoustic presence offshore Eastern Sicily (Ionian Sea), throughout the processing of about 10 months of continuous acoustic monitoring. The recording of fin whale vocalizations was made possible by the cabled deep-sea multidisciplinary observatory, “NEMO-SN1”, deployed 25 km off the Catania harbor at a depth of about 2,100 meters. NEMO-SN1 is an operational node of the European Multidisciplinary Seafloor and water-column Observatory (EMSO) Research Infrastructure. The observatory was equipped with a low-frequency hydrophone (bandwidth: 0.05 Hz–1 kHz, sampling rate: 2 kHz) which continuously acquired data from July 2012 to May 2013. About 7,200 hours of acoustic data were analyzed by means of spectrogram display. Calls with the typical structure and patterns associated to the Mediterranean fin whale population were identified and monitored in the area for the first time. Furthermore, a background noise analysis within the fin whale communication frequency band (17.9–22.5 Hz) was conducted to investigate possible detection-masking effects. The study confirms the hypothesis that fin whales are present in the Ionian Sea throughout all seasons, with peaks in call detection rate during spring and summer months. The analysis also demonstrates that calls were more frequently detected in low background noise conditions. Further analysis will be performed to understand whether observed levels of noise limit the acoustic detection of the fin whales vocalizations, or whether the animals vocalize less in the presence of high background noise.
    Description: Published
    Description: e0141838
    Description: 3A. Ambiente Marino
    Description: JCR Journal
    Description: open
    Keywords: Whales ; Bioacoustics ; Background noise (acoustics) ; Acoustic signals ; Sperm whales ; Vocalization ; Acoustics ; Data acquisition ; 03. Hydrosphere::03.01. General::03.01.08. Instruments and techniques ; 03. Hydrosphere::03.02. Hydrology::03.02.04. Measurements and monitoring ; 03. Hydrosphere::03.02. Hydrology::03.02.07. Instruments and techniques ; 03. Hydrosphere::03.04. Chemical and biological::03.04.99. General or miscellaneous
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 6
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    A novel approach to estimate the eruptive potential and probability in open conduit volcanoes (2016)
    Nature Publishing Group
    Details
    Publication Date: 2017-04-04
    Description: In open conduit volcanoes, volatile-rich magma continuously enters into the feeding system nevertheless the eruptive activity occurs intermittently. From a practical perspective, the continuous steady input of magma in the feeding system is not able to produce eruptive events alone, but rather surplus of magma inputs are required to trigger the eruptive activity. The greater the amount of surplus of magma within the feeding system, the higher is the eruptive probability.Despite this observation, eruptive potential evaluations are commonly based on the regular magma supply, and in eruptive probability evaluations, generally any magma input has the same weight. Conversely, herein we present a novel approach based on the quantification of surplus of magma progressively intruded in the feeding system. To quantify the surplus of magma, we suggest to process temporal series of measurable parameters linked to the magma supply. We successfully performed a practical application on Mt Etna using the soil CO2 flux recorded over ten years.
    Description: Published
    Description: 30471
    Description: 2V. Dinamiche di unrest e scenari pre-eruttivi
    Description: 5V. Sorveglianza vulcanica ed emergenze
    Description: JCR Journal
    Description: restricted
    Keywords: eruptive potential ; eruptive probability ; open conduit volcanoes ; Etna ; Soil CO2 flux ; 04. Solid Earth::04.08. Volcanology::04.08.99. General or miscellaneous ; 04. Solid Earth::04.08. Volcanology::04.08.01. Gases ; 04. Solid Earth::04.08. Volcanology::04.08.06. Volcano monitoring ; 05. General::05.08. Risk::05.08.01. Environmental risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 7
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    Presence of rapidly degrading permafrost plateaus in southcentral Alaska (2016)
    Copernicus
    In:  EPIC3The Cryosphere Discussions, Copernicus
    Details
    Publication Date: 2016-05-26
    Description: Permafrost presence is determined by a complex interaction of climatic, topographic, and ecological conditions operating over long time scales. In particular, vegetation and organic layer characteristics may act to protect permafrost in regions with a mean annual air temperature (MAAT) above 0 °C. In this study, we document the presence of residual permafrost plateaus on the western Kenai Peninsula lowlands of southcentral Alaska, a region with a MAAT of 1.5 ± 1 °C (1981 to 2010). Continuous ground temperature measurements between 16 September 2012 and 15 September 2015, using calibrated thermistor strings, documented the presence of warm permafrost (−0.04 to −0.08 °C). Field measurements (probing) on several plateau features during the fall of 2015 showed that the depth to the permafrost table averaged 1.48 m but was as shallow as 0.53 m. Late winter surveys (drilling, coring, and GPR) in 2016 showed that the average seasonally frozen ground thickness was 0.45 m, overlying a talik above the permafrost table. Measured permafrost thickness ranged from 0.33 to 〉 6.90 m. Manual interpretation of historic aerial photography acquired in 1950 indicates that residual permafrost plateaus covered 920 ha as mapped across portions of four wetland complexes encompassing 4810 ha. However, between 1950 and ca. 2010, permafrost plateau extent decreased by 60 %, with lateral feature degradation accounting for 85 % of the reduction in area. Permafrost loss on the Kenai Peninsula is likely associated with a warming climate, wildfires that remove the protective forest and organic layer cover, groundwater flow at depth, and lateral heat transfer from wetland surface waters in the summer. Better understanding the resilience and vulnerability of ecosystem-protected permafrost is critical for mapping and predicting future permafrost extent and degradation across all permafrost regions that are currently warming. Further work should focus on reconstructing permafrost history in southcentral Alaska as well as additional contemporary observations of these ecosystem-protected permafrost sites lying south of the regions with relatively stable permafrost.
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
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    Seasonal cycle of mesoscale instability of the West Spitsbergen Current (2016)
    American Meteorological Society
    In:  EPIC3Journal of Physical Oceanography, American Meteorological Society, 46(4), pp. 1231-1254
    Details
    Publication Date: 2016-11-03
    Description: The West Spitsbergen Current (WSC) is a topographically steered boundary current that transports warm Atlantic Water northward in Fram Strait. The 16 yr (1997–2012) current and temperature–salinity measurements from moorings in the WSC at 78°50′N reveal the dynamics of mesoscale variability in the WSC and the central Fram Strait. A strong seasonality of the fluctuations and the proposed driving mechanisms is described. In winter, water is advected in the WSC that has been subjected to strong atmospheric cooling in the Nordic Seas, and as a result the stratification in the top 250 m is weak. The current is also stronger than in summer and has a greater vertical shear. This results in an e-folding growth period for baroclinic instabilities of about half a day in winter, indicating that the current has the ability to rapidly grow unstable and form eddies. In summer, the WSC is significantly less unstable with an e-folding growth period of 2 days. Observations of the eddy kinetic energy (EKE) show a peak in the boundary current in January–February when it is most unstable. Eddies are then likely advected westward, and the EKE peak is observed 1–2 months later in the central Fram Strait. Conversely, the EKE in the WSC as well as in the central Fram Strait is reduced by a factor of more than 3 in late summer. Parameterizations for the expected EKE resulting from baroclinic instability can account for the observed EKE values. Hence, mesoscale instability can generate the observed variability, and high-frequency wind forcing is not required to explain the observed EKE.
    Repository Name: EPIC Alfred Wegener Institut
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  • 9
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    The amyloid precursor protein of Alzheimer’s disease clusters at the organelle/microtubule interface on organelles that bind microtubules in an ATP dependent manner (2016)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 11 (2016): e0147808, doi:10.1371/journal.pone.0147808.
    Description: The amyloid precursor protein (APP) is a causal agent in the pathogenesis of Alzheimer’s disease and is a transmembrane protein that associates with membrane-limited organelles. APP has been shown to co-purify through immunoprecipitation with a kinesin light chain suggesting that APP may act as a trailer hitch linking kinesin to its intercellular cargo, however this hypothesis has been challenged. Previously, we identified an mRNA transcript that encodes a squid homolog of human APP770. The human and squid isoforms share 60% sequence identity and 76% sequence similarity within the cytoplasmic domain and share 15 of the final 19 amino acids at the C-terminus establishing this highly conserved domain as a functionally import segment of the APP molecule. Here, we study the distribution of squid APP in extruded axoplasm as well as in a well-characterized reconstituted organelle/microtubule preparation from the squid giant axon in which organelles bind microtubules and move towards the microtubule plus-ends. We find that APP associates with microtubules by confocal microscopy and co-purifies with KI-washed axoplasmic organelles by sucrose density gradient fractionation. By electron microscopy, APP clusters at a single focal point on the surfaces of organelles and localizes to the organelle/microtubule interface. In addition, the association of APP-organelles with microtubules is an ATP dependent process suggesting that the APP-organelles contain a microtubule-based motor protein. Although a direct kinesin/APP association remains controversial, the distribution of APP at the organelle/microtubule interface strongly suggests that APP-organelles have an orientation and that APP like the Alzheimer’s protein tau has a microtubule-based function.
    Description: Research reported in this publication was supported by an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under grant number P20GM103430.
    Repository Name: Woods Hole Open Access Server
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  • 10
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    Jurassic zircons from the Southwest Indian Ridge (2016)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 26260, doi:10.1038/srep26260.
    Description: The existence of ancient rocks in present mid-ocean ridges have long been observed but received less attention. Here we report the discovery of zircons with both reasonably young ages of about 5 Ma and abnormally old ages of approximate 180 Ma from two evolved gabbroic rocks that were dredged from the Southwest Indian Ridge (SWIR) in the Gallieni fracture zone. U–Pb and Lu–Hf isotope analyses of zircons were made using ion probe and conventional laser abrasion directly in petrographic thin sections. Young zircons and their host oxide gabbro have positive Hf isotope compositions (εHf = +15.7–+12.4), suggesting a highly depleted mantle beneath the SWIR. The spread εHf values (from−2.3 to−4.5) of abnormally old zircons, together with the unradiogenic Nd-Hf isotope of the host quartz diorite, appears to suggest an ancient juvenile magmatism along the rifting margin of the southern Gondwana prior to the opening of the Indian Ocean. A convincing explanation for the origin of the unusually old zircons is yet to surface, however, an update of the theory of plate tectonics would be expected with continuing discovery of ancient rocks in the mid-oceanic ridges and abyssal ocean basins.
    Description: This work was supported by the National Natural Science Foundation of China (41573046) to H.C. and the Chinese National Key Basic Research Program (2012CB417300) to H.Z.
    Repository Name: Woods Hole Open Access Server
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  • 11
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    Influence of environmental variables on Gambierdiscus spp. (Dinophyceae) growth and distribution (2016)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 11 (2016): e0153197, doi:10.1371/journal.pone.0153197.
    Description: Benthic dinoflagellates in the genus Gambierdiscus produce the ciguatoxin precursors responsible for the occurrence of ciguatera toxicity. The prevalence of ciguatera toxins in fish has been linked to the presence and distribution of toxin-producing species in coral reef ecosystems, which is largely determined by the presence of suitable benthic habitat and environmental conditions favorable for growth. Here using single factor experiments, we examined the effects of salinity, irradiance, and temperature on growth of 17 strains of Gambierdiscus representing eight species/phylotypes (G. belizeanus, G. caribaeus, G. carolinianus, G. carpenteri, G. pacificus, G. silvae, Gambierdiscus sp. type 4–5), most of which were established from either Marakei Island, Republic of Kiribati, or St. Thomas, United States Virgin Island (USVI). Comparable to prior studies, growth rates fell within the range of 0–0.48 divisions day-1. In the salinity and temperature studies, Gambierdiscus responded in a near Gaussian, non-linear manner typical for such studies, with optimal and suboptimal growth occurring in the range of salinities of 25 and 45 and 21.0 and 32.5°C. In the irradiance experiment, no mortality was observed; however, growth rates at 55μmol photons · m-2 · s-1 were lower than those at 110–400μmol photons · m-2 · s-1. At the extremes of the environmental conditions tested, growth rates were highly variable, evidenced by large coefficients of variability. However, significant differences in intraspecific growth rates were typically found only at optimal or near-optimal growth conditions. Polynomial regression analyses showed that maximum growth occurred at salinity and temperature levels of 30.1–38.5 and 23.8–29.2°C, respectively. Gambierdiscus growth patterns varied among species, and within individual species: G. belizeanus, G. caribaeus, G. carpenteri, and G. pacificus generally exhibited a wider range of tolerance to environmental conditions, which may explain their broad geographic distribution. In contrast, G. silvae and Gambierdiscus sp. types 4–5 all displayed a comparatively narrow range of tolerance to temperature, salinity, and irradiance.
    Description: This study was funded by the National Natural Science Foundation of China (41506137); Guangxi Natural Science Foundation (2015GXNSFCA139003), Centers for Disease Control and Prevention (U01 EH000421); USFDA (F223201000060C); NOAA NOS through the CiguaHAB program (Cooperative Agreement NA11NOS4780060, NA11NOS4780028); the Lana Vento Trust and VI-EPSCoR Program (NSF award # 346483 & 081441); and a System Fund from Key Laboratory of Environment Change and Resources Use in Beibu Gulf, Ministry of Education (2014BGERLXT01). Support was also provided by the Woods Hole Center for Oceans and Human Health through National Science Foundation (NSF) Grant OCE-1314642, National Institute of Environmental Health Sciences (NIEHS) Grant 1-P01-ES021923-014, as well as the China Scholarship Council.
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  • 12
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    Comparative analysis of secretome profiles of manganese(II)-oxidizing Ascomycete fungi (2016)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.
    Description: Fungal secretomes contain a wide range of hydrolytic and oxidative enzymes, including cellulases, hemicellulases, pectinases, and lignin-degrading accessory enzymes, that synergistically drive litter decomposition in the environment. While secretome studies of model organisms such as Phanerochaete chrysosporium and Aspergillus species have greatly expanded our knowledge of these enzymes, few have extended secretome characterization to environmental isolates or conducted side-by-side comparisons of diverse species. Thus, the mechanisms of carbon degradation by many ubiquitous soil fungi remain poorly understood. Here we use a combination of LC-MS/MS, genomic, and bioinformatic analyses to characterize and compare the protein composition of the secretomes of four recently isolated, cosmopolitan, Mn(II)-oxidizing Ascomycetes (Alternaria alternata SRC1lrK2f, Stagonospora sp. SRC1lsM3a, Pyrenochaeta sp. DS3sAY3a, and Paraconiothyrium sporulosum AP3s5-JAC2a). We demonstrate that the organisms produce a rich yet functionally similar suite of extracellular enzymes, with species-specific differences in secretome composition arising from unique amino acid sequences rather than overall protein function. Furthermore, we identify not only a wide range of carbohydrate-active enzymes that can directly oxidize recalcitrant carbon, but also an impressive suite of redox-active accessory enzymes that suggests a role for Fenton-based hydroxyl radical formation in indirect, non-specific lignocellulose attack. Our findings highlight the diverse oxidative capacity of these environmental isolates and enhance our understanding of the role of filamentous Ascomycetes in carbon turnover in the environment.
    Description: This work was supported by the National Science Foundation (www.nsf.gov), grant numbers EAR-1249489 and CBET-1336496, both awarded to CMH. Personal support for CAZ was also provided by Harvard University (www.harvard.edu) and by a Ford Foundation (www.fordfoundation.org) Predoctoral Fellowship administered by the National Academies.
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  • 13
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    Potential impacts of offshore wind farms on North Sea stratification (2016)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 11 (2016): e0160830, doi:10.1371/journal.pone.0160830 .
    Description: Advances in offshore wind farm (OWF) technology have recently led to their construction in coastal waters that are deep enough to be seasonally stratified. As tidal currents move past the OWF foundation structures they generate a turbulent wake that will contribute to a mixing of the stratified water column. In this study we show that the mixing generated in this way may have a significant impact on the large-scale stratification of the German Bight region of the North Sea. This region is chosen as the focus of this study since the planning of OWFs is particularly widespread. Using a combination of idealised modelling and in situ measurements, we provide order-of-magnitude estimates of two important time scales that are key to understanding the impacts of OWFs: (i) a mixing time scale, describing how long a complete mixing of the stratification takes, and (ii) an advective time scale, quantifying for how long a water parcel is expected to undergo enhanced wind farm mixing. The results are especially sensitive to both the drag coefficient and type of foundation structure, as well as the evolution of the pycnocline under enhanced mixing conditions—both of which are not well known. With these limitations in mind, the results show that OWFs could impact the large-scale stratification, but only when they occupy extensive shelf regions. They are expected to have very little impact on large-scale stratification at the current capacity in the North Sea, but the impact could be significant in future large-scale development scenarios.
    Description: Funding was provided by the Helmholtz Foundation through the Polar Regions and Coasts in the Changing Earth System II (PACES II) program.
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  • 14
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    Predicting interactions between common dolphins and the pole-and-line tuna fishery in the Azores (2016)
    Public Library of Science
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS ONE 11 (2016): e0164107, doi:10.1371/journal.pone.0164107.
    Description: Common dolphins (Delphinus delphis) are responsible for the large majority of interactions with the pole-and-line tuna fishery in the Azores but the underlying drivers remain poorly understood. In this study we investigate the influence of various environmental and fisheries-related factors in promoting the interaction of common dolphins with this fishery and estimate the resultant catch losses. We analysed 15 years of fishery and cetacean interaction data (1998–2012) collected by observers placed aboard tuna fishing vessels. Dolphins interacted in less than 3% of the fishing events observed during the study period. The probability of dolphin interaction varied significantly between years with no evident trend over time. Generalized additive modeling results suggest that fishing duration, sea surface temperature and prey abundance in the region were the most important factors explaining common dolphin interaction. Dolphin interaction had no impact on the catches of albacore, skipjack and yellowfin tuna but resulted in significantly lower catches of bigeye tuna, with a predicted median annual loss of 13.5% in the number of fish captured. However, impact on bigeye catches varied considerably both by year and fishing area. Our work shows that rates of common dolphin interaction with the pole-and-line tuna fishery in the Azores are low and showed no signs of increase over the study period. Although overall economic impact was low, the interaction may lead to significant losses in some years. These findings emphasize the need for continued monitoring and for further research into the consequences and economic viability of potential mitigation measures.
    Description: This work was funded by Fundação para a Ciência e a Tecnologia (FCT) and DRCT/SRCTE, though FEDER, the Competitiveness Factors Operational (COMPETE), QREN European Social Fund, the Portuguese Ministry for Science and Education, under research projects TRACE (PTDC/MAR/74071/2006), FCT Exploratory Project (IF/00943/2013/CP1199/CT0001), and MAPCET (M2.1.2/F/012/2011). We acknowledge the support of Fundação para a Ciência e Tecnologia (FCT), through the strategic project UID/MAR/04292/2013 granted to MARE. We thank the Azorean Regional Government for funding POPA, the Ship-owners Association and the Association of the Tuna Canning Industries for their support to the program. MJC was supported by a DRCT doctoral grant (M3.1.2/F/008/2009). MAS was supported by POPH, QREN, European Social Fund and Portuguese Ministry for Science and Education, through an FCT Investigator grant (IF/00943/2013).
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    Spreading of Denmark Strait overflow water in the western subpolar North Atlantic : insights from eddy-resolving simulations with a passive tracer (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 45 (2015): 2913–2932, doi:10.1175/JPO-D-14-0179.1.
    Description: The oceanic deep circulation is shared between concentrated deep western boundary currents (DWBCs) and broader interior pathways, a process that is sensitive to seafloor topography. This study investigates the spreading and deepening of Denmark Strait overflow water (DSOW) in the western subpolar North Atlantic using two ° eddy-resolving Atlantic simulations, including a passive tracer injected into the DSOW. The deepest layers of DSOW transit from a narrow DWBC in the southern Irminger Sea into widespread westward flow across the central Labrador Sea, which remerges along the Labrador coast. This abyssal circulation, in contrast to the upper levels of overflow water that remain as a boundary current, blankets the deep Labrador Sea with DSOW. Farther downstream after being steered around the abrupt topography of Orphan Knoll, DSOW again leaves the boundary, forming cyclonic recirculation cells in the deep Newfoundland basin. The deep recirculation, mostly driven by the meandering pathway of the upper North Atlantic Current, leads to accumulation of tracer offshore of Orphan Knoll, precisely where a local maximum of chlorofluorocarbon (CFC) inventory is observed. At Flemish Cap, eddy fluxes carry ~20% of the tracer transport from the boundary current into the interior. Potential vorticity is conserved as the flow of DSOW broadens at the transition from steep to less steep continental rise into the Labrador Sea, while around the abrupt topography of Orphan Knoll, potential vorticity is not conserved and the DSOW deepens significantly.
    Description: This work is supported by ONR Award N00014-09-1-0587, the NSF Physical Oceanography Program, and NASA Ocean Surface Topography Science Team Program.
    Description: 2016-06-01
    Keywords: Circulation/ Dynamics ; Abyssal circulation ; Boundary currents ; Ocean circulation ; Ocean dynamics ; Potential vorticity ; Topographic effects
    Repository Name: Woods Hole Open Access Server
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    An integrated Pan-European perspective on coastal Lagoons management through a mosaic-DPSIR approach (2016)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 19400, doi:10.1038/srep19400.
    Description: A decision support framework for the management of lagoon ecosystems was tested using four European Lagoons: Ria de Aveiro (Portugal), Mar Menor (Spain), Tyligulskyi Liman (Ukraine) and Vistula Lagoon (Poland/Russia). Our aim was to formulate integrated management recommendations for European lagoons. To achieve this we followed a DPSIR (Drivers-Pressures-State Change-Impacts-Responses) approach, with focus on integrating aspects of human wellbeing, welfare and ecosystem sustainability. The most important drivers in each lagoon were identified, based on information gathered from the lagoons’ stakeholders, complemented by scientific knowledge on each lagoon as seen from a land-sea perspective. The DPSIR cycles for each driver were combined into a mosaic-DPSIR conceptual model to examine the interdependency between the multiple and interacting uses of the lagoon. This framework emphasizes the common links, but also the specificities of responses to drivers and the ecosystem services provided. The information collected was used to formulate recommendations for the sustainable management of lagoons within a Pan-European context. Several common management recommendations were proposed, but specificities were also identified. The study synthesizes the present conditions for the management of lagoons, thus analysing and examining the activities that might be developed in different scenarios, scenarios which facilitate ecosystem protection without compromising future generations.
    Description: This study was supported by the European Commission, under the 7th Framework Programme, through the collaborative research project LAGOONS (contract n° 283157); by European funds through COMPETE and by Portuguese funds through the national Foundation for Science and Technology – FCT (PEst-C/MAR/LA0017/2013). The post-Doc grant SFRH/BPD/41117/2007 (M Dolbeth) and the PhD grant SFRH/BD/79170/2011 (LP Sousa) supported by FCT are also acknowledged.
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    Downfront winds over buoyant coastal plumes (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3139-3154, doi:10.1175/JPO-D-16-0042.1.
    Description: Downfront, or downwelling favorable, winds are commonly found over buoyant coastal plumes. It is known that these winds can result in mixing of the plume with the ambient water and that the winds influence the transport, spatial extent, and stability of the plumes. In the present study, the interaction of the Ekman velocity in the surface layer and baroclinic instability supported by the strong horizontal density gradient of the plume is explored with the objective of understanding the potential vorticity and buoyancy budgets. The approach makes use of an idealized numerical model and scaling theory. It is shown that when winds are present the weak stratification resulting from vertical mixing and the strong baroclinicity of the front results in near-zero average potential vorticity q. For weak to moderate winds, the reduction of q by diapycnal mixing is balanced by the generation of q through the geostrophic stress term in the regions of strong horizontal density gradients and stable stratification. However, for very strong winds the wind stress overwhelms the geostrophic stress and leads to a reduction in q, which is balanced by the vertical mixing term. In the absence of winds, the geostrophic stress dominates mixing and the flow rapidly restratifies. Nonlinearity, extremes of relative vorticity and vertical velocity, and mixing are all enhanced by the presence of a coast. Scaling estimates developed for the eddy buoyancy flux, the surface potential vorticity flux, and the diapycnal mixing rate compare well with results diagnosed from a series of numerical model calculations.
    Description: This study was supported by NSF Grants OCE-1433170 (MAS) and OCE-1459677 (LNT).
    Description: 2017-04-07
    Keywords: Coastal flows ; Ekman pumping/transport ; Mesoscale processes ; Wind stress
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    Annual and semiannual cycle of equatorial Atlantic circulation associated with basin-mode resonance (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3011-3029, doi:10.1175/JPO-D-15-0248.1.
    Description: Seasonal variability of the tropical Atlantic circulation is dominated by the annual cycle, but semiannual variability is also pronounced, despite weak forcing at that period. This study uses multiyear, full-depth velocity measurements from the central equatorial Atlantic to analyze the vertical structure of annual and semiannual variations of zonal velocity. A baroclinic modal decomposition finds that the annual cycle is dominated by the fourth mode and the semiannual cycle is dominated by the second mode. Similar local behavior is found in a high-resolution general circulation model. This simulation reveals that the annual and semiannual cycles of the respective dominant baroclinic modes are associated with characteristic basinwide structures. Using an idealized, linear, reduced-gravity model to simulate the dynamics of individual baroclinic modes, it is shown that the observed circulation variability can be explained by resonant equatorial basin modes. Corollary simulations of the reduced-gravity model with varying basin geometry (i.e., square basin vs realistic coastlines) or forcing (i.e., spatially uniform vs spatially variable wind) show a structural robustness of the simulated basin modes. A main focus of this study is the seasonal variability of the Equatorial Undercurrent (EUC) as identified in recent observational studies. Main characteristics of the observed EUC including seasonal variability of transport, core depth, and maximum core velocity can be explained by the linear superposition of the dominant equatorial basin modes as obtained from the reduced-gravity model.
    Description: This study was supported by the Deutsche Forschungsgemeinschaft as part of the Sonderforschungsbereich 754 (SFB754) ‘‘Climate–Biogeochemistry Interactions in the Tropical Ocean’’ and through several research cruises with R/V Meteor, R/V Maria S. Merian, andR/VL’Atalante by the German Federal Ministry of Education and Research as part of the cooperative projects RACE (03F0605B) and SACUS (03G0837A) and by European Union 7th Framework Programme (FP7 2007–13) under Grant Agreement 603521 PREFACE project.
    Keywords: Atlantic Ocean ; Ocean circulation ; In situ oceanic observations ; Ocean models ; Seasonal cycle ; Tropical variability
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    Nutrient enrichment induces dormancy and decreases diversity of active bacteria in salt marsh sediments (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 7 (2016): 12881, doi:10.1038/ncomms12881.
    Description: Microorganisms control key biogeochemical pathways, thus changes in microbial diversity, community structure and activity can affect ecosystem response to environmental drivers. Understanding factors that control the proportion of active microbes in the environment and how they vary when perturbed is critical to anticipating ecosystem response to global change. Increasing supplies of anthropogenic nitrogen to ecosystems globally makes it imperative that we understand how nutrient supply alters active microbial communities. Here we show that nitrogen additions to salt marshes cause a shift in the active microbial community despite no change in the total community. The active community shift causes the proportion of dormant microbial taxa to double, from 45 to 90%, and induces diversity loss in the active portion of the community. Our results suggest that perturbations to salt marshes can drastically alter active microbial communities, however these communities may remain resilient by protecting total diversity through increased dormancy.
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    Expansion and contraction of the Indo-Pacific tropical rain belt over the last three millennia (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 34485, doi:10.1038/srep34485.
    Description: The seasonal north-south migration of the intertropical convergence zone (ITCZ) defines the tropical rain belt (TRB), a region of enormous terrestrial and marine biodiversity and home to 40% of people on Earth. The TRB is dynamic and has been shown to shift south as a coherent system during periods of Northern Hemisphere cooling. However, recent studies of Indo-Pacific hydroclimate suggest that during the Little Ice Age (LIA; AD 1400–1850), the TRB in this region contracted rather than being displaced uniformly southward. This behaviour is not well understood, particularly during climatic fluctuations less pronounced than those of the LIA, the largest centennial-scale cool period of the last millennium. Here we show that the Indo-Pacific TRB expanded and contracted numerous times over multi-decadal to centennial scales during the last 3,000 yr. By integrating precisely-dated stalagmite records of tropical hydroclimate from southern China with a newly enhanced stalagmite time series from northern Australia, our study reveals a previously unidentified coherence between the austral and boreal summer monsoon. State-of-the-art climate model simulations of the last millennium suggest these are linked to changes in the structure of the regional manifestation of the atmosphere’s meridional circulation.
    Description: Funded by grants from the US National Science Foundation (NSF) Paleo Perspectives on Climate Change (P2C2) program (AGS-1103413), the Center for Global and Regional Environmental Research, and Cornell College (to R.F.D.); and the NSF P2C2 program (AGS-1203704 and AGS-1602455) and the Penzance and John P. Chase Memorial Endowed Funds at WHOI (to C.C.U.).
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    Heat, salt, and freshwater budgets for a glacial fjord in Greenland (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 2735-2768, doi:10.1175/JPO-D-15-0134.1.
    Description: In Greenland’s glacial fjords, heat and freshwater are exchanged between glaciers and the ocean. Submarine melting of glaciers has been implicated as a potential trigger for recent glacier acceleration, and observations of ocean heat transport are increasingly being used to infer the submarine melt rates. The complete heat, salt, and mass budgets that underlie such methods, however, have been largely neglected. Here, a new framework for exploring glacial fjord budgets is developed. Building on estuarine studies of salt budgets, the heat, salt, and mass transports through the fjord are decomposed, and new equations for calculating freshwater fluxes from submarine meltwater and runoff are presented. This method is applied to moored records from Sermilik Fjord, near the terminus of Helheim Glacier, to evaluate the dominant balances in the fjord budgets and to estimate freshwater fluxes. Throughout the year, two different regimes are found. In the nonsummer months, advective transports are balanced by changes in heat/salt storage within their ability to measure; freshwater fluxes cannot be inferred as a residual. In the summer, a mean exchange flow emerges, consisting of inflowing Atlantic water and outflowing glacially modified water. This exchange transports heat toward the glacier and is primarily balanced by changes in storage and latent heat for melting ice. The total freshwater flux increases over the summer, reaching 1200 ± 700 m3 s−1 of runoff and 1500 ± 500 m3 s−1 of submarine meltwater from glaciers and icebergs in August. The methods and results highlight important components of fjord budgets, particularly the storage and barotropic terms, that have been not been appropriately considered in previous estimates of submarine melting.
    Description: The data collection and analysis was funded by NSF Grants ARC-0909373, OCE-113008, and OCE-1434041.
    Keywords: Geographic location/entity ; Estuaries ; Glaciers ; Circulation/ Dynamics ; Coastal flows ; Atm/Ocean Structure/ Phenomena ; Freshwater ; Snowmelt/icemelt ; Observational techniques and algorithms ; In situ oceanic observations
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    The occurrence, drivers, and implications of submesoscale eddies on the Martha’s Vineyard Inner Shelf (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 2645-2662, doi:10.1175/JPO-D-15-0191.1.
    Description: The occurrence, drivers, and implications of small-scale O(2–5) km diameter coherent vortices, referred to as submesoscale eddies, over the inner shelf south of Martha’s Vineyard, Massachusetts, are examined using high-frequency (HF), radar-based, high-resolution (400 m) observations of surface currents. Within the 300 km2 study area, eddies occurred at rates of 1 and 4 day−1 in winter and summer, respectively. Most were less than 5 h in duration, smaller than 4 km in diameter, and rotated less than once over their lifespan; 60% of the eddies formed along the eastern edge of study area, adjacent to Wasque Shoal, and moved westward into the interior, often with relative vorticity greater than f. Eddy generation was linked to vortex stretching on the ebb and flood tide as well as the interaction of the spatially variable tide and the wind-driven currents; however, these features had complex patterns of surface divergence and stretching. Eddies located away from Wasque Shoal were related to the movement of wind-driven surface currents, as wind direction controlled where eddies formed as well as density effects. Using an analysis of particles advected within the radar-based surface currents, the observed eddies were found to be generally leaky, losing 60%–80% of particles over their lifespan, but still more retentive than the background flow. As a result, the combined translation and rotational effects of the observed eddies were an important source of lateral exchange for surface waters over the inner shelf.
    Description: The HF radar data utilized here were obtained using internal funding from the Woods Hole Oceanographic Institution. The analysis was supported by NSF OCE Grant 1332646.
    Description: 2017-02-19
    Keywords: Geographic location/entity ; Continental shelf/slope ; Circulation/ Dynamics ; Currents ; Eddies ; Observational techniques and algorithms ; Radars/Radar observations
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    Mercury-pollution induction of intracellular lipid accumulation and lysosomal compartment amplification in the benthic foraminifer Ammonia parkinsoniana (2016)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The definitive version was published in PLoS One 11 (2016): e0162401, doi:10.1371/journal.pone.0162401.
    Description: Heavy metals such as mercury (Hg) pose a significant health hazard through bioaccumulation and biomagnification. By penetrating cell membranes, heavy metal ions may lead to pathological conditions. Here we examined the responses of Ammonia parkinsoniana, a benthic foraminiferan, to different concentrations of Hg in the artificial sea water. Confocal images of untreated and treated specimens using fluorescent probes (Nile Red and Acridine Orange) provided an opportunity for visualizing the intracellular lipid accumulation and acidic compartment regulation. With increased Hg over time, we observed an increased number of lipid droplets, which may have acted as a detoxifying organelle where Hg is sequestered and biologically inactivated. Further, Hg seems to promote the proliferation of lysosomes both in terms of number and dimension that, at the highest level of Hg, resulted in cell death. We report, for the first time, the presence of Hg within the foraminiferal cell: at the basal part of pores, in the organic linings of the foramen/septa, and as cytoplasmic accumulations.
    Description: The research for this paper was partially made possible by the financial support from the PRIN 2010-2011 Ministero dell’Istruzione, dell’Università e della Ricerca (MIUR) (protocollo 2010RMTLYR) to RC. JMB acknowledges support from The Investment in Science Fund at WHOI. BG, JRE, AJ, LZ, and EMP were supported in part by the Office of Biological and Environmental Research, US Department of Energy (DOE) as part of the Mercury Science Focus Area at Oak Ridge National Laboratory, which is managed by UT-Battelle LLC for the DOE under contract DE-AC05-00OR22725.
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    The good, the bad, and the tiny : a simple, mechanistic-probabilistic model of virus-nutrient colimitation in microbes (2016)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 10 (2015): e0143299, doi:10.1371/journal.pone.0143299.
    Description: For phytoplankton and other microbes, nutrient receptors are often the passages through which viruses invade. This presents a bottom-up vs. top-down, co-limitation scenario; how do these would-be-hosts balance minimizing viral susceptibility with maximizing uptake of limiting nutrient(s)? This question has been addressed in the biological literature on evolutionary timescales for populations, but a shorter timescale, mechanistic perspective is lacking, and marine viral literature suggests the strong influence of additional factors, e.g. host size; while the literature on both nutrient uptake and host-virus interactions is expansive, their intersection, of ubiquitous relevance to marine environments, is understudied. I present a simple, mechanistic model from first principles to analyze the effect of this co-limitation scenario on individual growth, which suggests that in environments with high risk of viral invasion or spatial/temporal heterogeneity, an individual host’s growth rate may be optimized with respect to receptor coverage, producing top-down selective pressure on short timescales. The model has general applicability, is suggestive of hypotheses for empirical exploration, and can be extended to theoretical studies of more complex behaviors and systems.
    Description: This work was supported by the Massachusetts Institute of Technology Charles Vest Presidential Fellowship.
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    Decrease in coccolithophore calcification and CO2 since the middle Miocene (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 7 (2016): 10284, doi:10.1038/ncomms10284.
    Description: Marine algae are instrumental in carbon cycling and atmospheric carbon dioxide (CO2) regulation. One group, coccolithophores, uses carbon to photosynthesize and to calcify, covering their cells with chalk platelets (coccoliths). How ocean acidification influences coccolithophore calcification is strongly debated, and the effects of carbonate chemistry changes in the geological past are poorly understood. This paper relates degree of coccolith calcification to cellular calcification, and presents the first records of size-normalized coccolith thickness spanning the last 14 Myr from tropical oceans. Degree of calcification was highest in the low-pH, high-CO2 Miocene ocean, but decreased significantly between 6 and 4 Myr ago. Based on this and concurrent trends in a new alkenone εp record, we propose that decreasing CO2 partly drove the observed trend via reduced cellular bicarbonate allocation to calcification. This trend reversed in the late Pleistocene despite low CO2, suggesting an additional regulator of calcification such as alkalinity.
    Description: Funding for this research was provided by the European Research Council under grant UE-09-ERC-2009-STG-240222-PACE (HMS), the Principado de Asturias under award FC-13-COF13-044 (HMS) and a French ANR infrastructure project EMBRC-France (IP).
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    Extensive modulation of the fecal metagenome in children With Crohn’s disease during exclusive enteral nutrition (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in American Journal of Gastroenterology 110 (2015): 1718–1729, doi:10.1038/ajg.2015.357.
    Description: Exploring associations between the gut microbiota and colonic inflammation and assessing sequential changes during exclusive enteral nutrition (EEN) may offer clues into the microbial origins of Crohn’s disease (CD). Fecal samples (n=117) were collected from 23 CD and 21 healthy children. From CD children fecal samples were collected before, during EEN, and when patients returned to their habitual diets. Microbiota composition and functional capacity were characterized using sequencing of the 16S rRNA gene and shotgun metagenomics. Microbial diversity was lower in CD than controls before EEN (P=0.006); differences were observed in 36 genera, 141 operational taxonomic units (OTUs), and 44 oligotypes. During EEN, the microbial diversity of CD children further decreased, and the community structure became even more dissimilar than that of controls. Every 10 days on EEN, 0.6 genus diversity equivalents were lost; 34 genera decreased and one increased during EEN. Fecal calprotectin correlated with 35 OTUs, 14 of which accounted for 78% of its variation. OTUs that correlated positively or negatively with calprotectin decreased during EEN. The microbiota of CD patients had a broader functional capacity than healthy controls, but diversity decreased with EEN. Genes involved in membrane transport, sulfur reduction, and nutrient biosynthesis differed between patients and controls. The abundance of genes involved in biotin (P=0.005) and thiamine biosynthesis decreased (P=0.017), whereas those involved in spermidine/putrescine biosynthesis (P=0.031), or the shikimate pathway (P=0.058), increased during EEN. Disease improvement following treatment with EEN is associated with extensive modulation of the gut microbiome.
    Description: The IBD team at Royal Hospital for Children, Glasgow, is supported by the Catherine McEwan Foundation and the Yorkhill IBD fund.
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    Impact of two plumes’ interaction on submarine melting of tidewater glaciers : a laboratory study (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 361–367, doi:10.1175/JPO-D-15-0171.1.
    Description: Idealized laboratory experiments investigate the glacier–ocean boundary dynamics near a vertical glacier in a two-layer stratified fluid. Discharge of meltwater runoff at the base of the glacier (subglacial discharge) enhances submarine melting. In the laboratory, the effect of multiple sources of subglacial discharge is simulated by introducing freshwater at freezing temperature from two point sources at the base of an ice block representing the glacier. The buoyant plumes of cold meltwater and subglacial discharge water entrain warm ambient water, rise vertically, and interact within a layer of depth H2 if the distance between the sources x0 is smaller than H2α/0.35, where α is the entrainment constant. The plume water detaches from the glacier face at the interface between the two layers and/or at the free surface, as confirmed by previous numerical studies and field observations. A plume model is used to explain the observed nonmonotonic dependence of submarine melting on the sources’ separation. The distance between the two sources influences the entrainment of warm water in the plumes and consequently the amount of submarine melting and the final location of the meltwater within the water column. Two interacting plumes located very close together are observed to melt approximately half as much as two independent plumes. The inclusion, or parameterization, of the dynamics regulating multiple plumes’ interaction is therefore necessary for a correct estimate of submarine melting. Hence, the distribution and number of sources of subglacial discharge may play an important role in glacial melt rates and fjord stratification and circulation.
    Description: Support to C.C. was given by the NSF Project OCE-1130008 and OCE-1434041. V.M.G. received support from the “Gori” Fellowship.
    Description: 2016-07-01
    Keywords: Geographic location/entity ; Glaciers ; Circulation/ Dynamics ; Buoyancy ; Entrainment ; Ocean dynamics ; Small scale processes ; Models and modeling ; Laboratory/physical models
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    Potential vorticity structure in the North Atlantic western boundary current from underwater glider observations (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 327–348, doi:10.1175/JPO-D-15-0112.1.
    Description: Potential vorticity structure in two segments of the North Atlantic’s western boundary current is examined using concurrent, high-resolution measurements of hydrography and velocity from gliders. Spray gliders occupied 40 transects across the Loop Current in the Gulf of Mexico and 11 transects across the Gulf Stream downstream of Cape Hatteras. Cross-stream distributions of the Ertel potential vorticity and its components are calculated for each transect under the assumptions that all flow is in the direction of measured vertically averaged currents and that the flow is geostrophic. Mean cross-stream distributions of hydrographic properties, potential vorticity, and alongstream velocity are calculated for both the Loop Current and the detached Gulf Stream in both depth and density coordinates. Differences between these mean transects highlight the downstream changes in western boundary current structure. As the current increases its transport downstream, upper-layer potential vorticity is generally reduced because of the combined effects of increased anticyclonic relative vorticity, reduced stratification, and increased cross-stream density gradients. The only exception is within the 20-km-wide cyclonic flank of the Gulf Stream, where intense cyclonic relative vorticity results in more positive potential vorticity than in the Loop Current. Cross-stream gradients of mean potential vorticity satisfy necessary conditions for both barotropic and baroclinic instability within the western boundary current. Instances of very low or negative potential vorticity, which predispose the flow to various overturning instabilities, are observed in individual transects across both the Loop Current and the Gulf Stream.
    Description: Glider operations in the Gulf Stream were supported by the National Science Foundation under Grant OCE-0220769. Glider operations in the Gulf of Mexico were supported by BP. R.E.T. was supported by the Penzance Endowed Fund in Support of Assistant Scientists and the Independent Research and Development Program at WHOI.
    Description: 2016-07-01
    Keywords: Geographic location/entity ; North Atlantic Ocean ; Circulation/ Dynamics ; Boundary currents ; Potential vorticity ; Atm/Ocean Structure/ Phenomena ; Boundary currents
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    Wind sea behind a cold front and deep ocean acoustics (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1705-1716, doi:10.1175/JPO-D-15-0221.1.
    Description: A rapid and broadband (1 h, 1 〈 f 〈 400 Hz) increase in pressure and vertical velocity on the deep ocean floor was observed on seven instruments comprising a 20-km array in the northeastern subtropical Pacific. The authors associate the jump with the passage of a cold front and focus on the 4- and 400-Hz spectra. At every station, the time of the jump is consistent with the front coming from the northwest. The apparent rate of progress, 10–20 km h−1 (2.8–5.6 m s−1), agrees with meteorological observations. The acoustic radiation below the front is modeled as arising from a moving half-plane of uncorrelated acoustic dipoles. The half-plane is preceded by a 10-km transition zone, over which the radiator strength increases linearly from zero. With this model, the time derivative of the jump at a station yields a second and independent estimate of the front’s speed, 8.5 km h−1 (2.4 m s−1). For the 4-Hz spectra, the source physics is taken to be Longuet-Higgins radiation. Its strength depends on the quantity , where Fζ is the wave amplitude power spectrum and I the overlap integral. Thus, the 1-h time constant observed in the bottom data implies a similar time constant for the growth of the wave field quantity behind the front. The spectra at 400 Hz have a similar time constant, but the jump occurs 25 min later. The implications of this difference for the source physics are uncertain.
    Description: The OBSANP cruise was funded by the Office of Naval Research under Grants N00014-10-1-0987, N00014-14-1-0324, N00014-10-1-0510, and N00014-10-1-0990.
    Keywords: Atm/Ocean Structure/ Phenomena ; Atmosphere-ocean interaction ; Cold fronts ; Marine boundary layer ; Sea state
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    Statistics of nonlinear internal waves during the Shallow Water 2006 Experiment (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 33 (2016): 839-846, doi:10.1175/JTECH-D-15-0221.1.
    Description: During the Shallow Water Acoustic Experiment 2006 (SW06) conducted on the New Jersey continental shelf in the summer of 2006, detailed measurements of the ocean environment were made along a fixed reference track that was parallel to the continental shelf. The time-varying environment induced by nonlinear internal waves (NLIWs) was recorded by an array of moored thermistor chains and by X-band radars from the attending research vessels. Using a mapping technique, the three-dimensional (3D) temperature field for over a month of NLIW events is reconstructed and analyzed to provide a statistical summary of important NLIW parameters, such as the NLIW propagation speed, direction, and amplitude. The results in this paper can be used as a database for studying the NLIW generation, propagation, and fidelity of nonlinear internal wave models.
    Description: This research was supported by the Office of Naval Research Ocean Acoustics Program (322OA) through Grants N00014-10-1-0396 and N00014-11-1-0701.
    Description: 2016-10-18
    Keywords: Geographic location/entity ; Continental shelf/slope ; North America ; Observational techniques and algorithms ; Data processing ; In situ oceanic observations ; Sampling ; Mathematical and statistical techniques ; Statistics
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    Variations of the global net air–sea heat flux during the “hiatus” period (2001–10) (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 29 (2016): 3647-3660, doi:10.1175/JCLI-D-15-0626.1.
    Description: An assessment is made of the mean and variability of the net air–sea heat flux, Qnet, from four products (ECCO, OAFlux–CERES, ERA-Interim, and NCEP1) over the global ice-free ocean from January 2001 to December 2010. For the 10-yr “hiatus” period, all products agree on an overall net heat gain over the global ice-free ocean, but the magnitude varies from 1.7 to 9.5 W m−2. The differences among products are particularly large in the Southern Ocean, where they cannot even agree on whether the region gains or loses heat on the annual mean basis. Decadal trends of Qnet differ significantly between products. ECCO and OAFlux–CERES show almost no trend, whereas ERA-Interim suggests a downward trend and NCEP1 shows an upward trend. Therefore, numerical simulations utilizing different surface flux forcing products will likely produce diverged trends of the ocean heat content during this period. The downward trend in ERA-Interim started from 2006, driven by a peculiar pattern change in the tropical regions. ECCO, which used ERA-Interim as initial surface forcings and is constrained by ocean dynamics and ocean observations, corrected the pattern. Among the four products, ECCO and OAFlux–CERES show great similarities in the examined spatial and temporal patterns. Given that the two estimates were obtained using different approaches and based on largely independent observations, these similarities are encouraging and instructive. It is more likely that the global net air–sea heat flux does not change much during the so-called hiatus period.
    Description: This paper is funded in part by the NOAA Climate Observation Division, Climate Program Office, under Grant NA09OAR4320129 and by the NOAA MAPP Climate Reanalysis Task Force Team under Grant NA13OAR4310106. The study was initiated when X. Liang was a postdoc at MIT, where he was supported in part by the NSF through Grant OCE-0961713, by NOAA through Grant NA10OAR4310135, and by the NASA Physical Oceanography Program through ECCO.
    Description: 2016-11-15
    Keywords: Physical Meteorology and Climatology ; Heat budgets/fluxes ; Surface fluxes ; Models and modeling ; Reanalysis data ; Variability ; Climate variability ; Interannual variability ; Seasonal variability
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    (Meta)genomic insights into the pathogenome of Cellulosimicrobium cellulans (2016)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 25527, doi:10.1038/srep25527.
    Description: Despite having serious clinical manifestations, Cellulosimicrobium cellulans remain under-reported with only three genome sequences available at the time of writing. Genome sequences of C. cellulans LMG16121, C. cellulans J36 and Cellulosimicrobium sp. strain MM were used to determine distribution of pathogenicity islands (PAIs) across C. cellulans, which revealed 49 potential marker genes with known association to human infections, e.g. Fic and VbhA toxin-antitoxin system. Oligonucleotide composition-based analysis of orthologous proteins (n = 791) across three genomes revealed significant negative correlation (P 〈 0.05) between frequency of optimal codons (Fopt) and gene G+C content, highlighting the G+C-biased gene conversion (gBGC) effect across Cellulosimicrobium strains. Bayesian molecular-clock analysis performed on three virulent PAI proteins (Fic; D-alanyl-D-alanine-carboxypeptidase; transposase) dated the divergence event at 300 million years ago from the most common recent ancestor. Synteny-based annotation of hypothetical proteins highlighted gene transfers from non-pathogenic bacteria as a key factor in the evolution of PAIs. Additonally, deciphering the metagenomic islands using strain MM’s genome with environmental data from the site of isolation (hot-spring biofilm) revealed (an)aerobic respiration as population segregation factor across the in situ cohorts. Using reference genomes and metagenomic data, our results highlight the emergence and evolution of PAIs in the genus Cellulosimicrobium.
    Description: The authors acknowledge funds from Department of Biotechnology (DBT) and National Bureau of Agriculturally Important Microorganisms (NBAIM). AS gratefully acknowledge National Bureau of Agriculturally Important Microorganisms (NBAIM) for providing research fellowship.
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    Investigating the eddy diffusivity concept in the coastal ocean (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 2201-2218, doi:10.1175/JPO-D-16-0020.1.
    Description: This paper aims to test the validity, utility, and limitations of the lateral eddy diffusivity concept in a coastal environment through analyzing data from coupled drifter and dye releases within the footprint of a high-resolution (800 m) high-frequency radar south of Martha’s Vineyard, Massachusetts. Specifically, this study investigates how well a combination of radar-based velocities and drifter-derived diffusivities can reproduce observed dye spreading over an 8-h time interval. A drifter-based estimate of an anisotropic diffusivity tensor is used to parameterize small-scale motions that are unresolved and underresolved by the radar system. This leads to a significant improvement in the ability of the radar to reproduce the observed dye spreading.
    Description: IR, AK, and SL were supported by the NSF OCE Grant 1332646. IR was also supported by NASA Grant NNX14AH29G.
    Description: 2016-12-29
    Keywords: Circulation/ Dynamics ; Coastal flows ; Diffusion ; Lagrangian circulation/transport ; Observational techniques and algorithms ; Radars/Radar observations ; Models and modeling ; Tracers
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    Reply to “Comments on ‘The interaction of an eastward-flowing current and an island : sub- and supercritical flow’” (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 2267–2268, doi:10.1175/JPO-D-16-0057.1.
    Description: The original article that was the subject of this comment/reply can be found at http://journals.ametsoc.org/doi/abs/10.1175/JPO-D-15-0061.1.
    Description: 2017-01-12
    Keywords: Circulation/ Dynamics ; Circulation/ Dynamics
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    Coupled RNA-SIP and metatranscriptomics of active chemolithoautotrophic communities at a deep-sea hydrothermal vent (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The International Society for Microbial Ecology, 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ISME Journal 10 (2016): 1925–1938, doi:10.1038/ismej.2015.258.
    Description: The chemolithoautotrophic microbial community of the rocky subseafloor potentially provides a large amount of organic carbon to the deep ocean, yet our understanding of the activity and metabolic complexity of subseafloor organisms remains poorly described. A combination of metagenomic, metatranscriptomic, and RNA stable isotope probing (RNA-SIP) analyses were used to identify the metabolic potential, expression patterns, and active autotrophic bacteria and archaea and their pathways present in low-temperature hydrothermal fluids from Axial Seamount, an active submarine volcano. Metagenomic and metatranscriptomic results showed the presence of genes and transcripts for sulfur, hydrogen, and ammonium oxidation, oxygen respiration, denitrification, and methanogenesis, as well as multiple carbon fixation pathways. In RNA-SIP experiments across a range of temperatures under reducing conditions, the enriched 13C fractions showed differences in taxonomic and functional diversity. At 30 °C and 55 °C, Epsilonproteobacteria were dominant, oxidizing hydrogen and primarily reducing nitrate. Methanogenic archaea were also present at 55 °C, and were the only autotrophs present at 80 °C. Correspondingly, the predominant CO2 fixation pathways changed from the reductive tricarboxylic acid (rTCA) cycle to the reductive acetyl-CoA pathway with increasing temperature. By coupling RNA-SIP with meta-omics, this study demonstrates the presence and activity of distinct chemolithoautotrophic communities across a thermal gradient of a deep-sea hydrothermal vent.
    Description: This work was funded by the Gordon and Betty Moore Foundation Grant GBMF3297 and NSF Center for Dark Energy Biosphere Investigations (C-DEBI) (OCE-0939564). The data collected in this study is based upon work supported by the Schmidt Ocean Institute during cruise FK010-2013 aboard R/V Falkor.
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    Species-specific control of external superoxide levels by the coral holobiont during a natural bleaching event (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 7 (2016): 13801, doi:10.1038/ncomms13801.
    Description: The reactive oxygen species superoxide (O2·−) is both beneficial and detrimental to life. Within corals, superoxide may contribute to pathogen resistance but also bleaching, the loss of essential algal symbionts. Yet, the role of superoxide in coral health and physiology is not completely understood owing to a lack of direct in situ observations. By conducting field measurements of superoxide produced by corals during a bleaching event, we show substantial species-specific variation in external superoxide levels, which reflect the balance of production and degradation processes. Extracellular superoxide concentrations are independent of light, algal symbiont abundance and bleaching status, but depend on coral species and bacterial community composition. Furthermore, coral-derived superoxide concentrations ranged from levels below bulk seawater up to ∼120 nM, some of the highest superoxide concentrations observed in marine systems. Overall, these results unveil the ability of corals and/or their microbiomes to regulate superoxide in their immediate surroundings, which suggests species-specific roles of superoxide in coral health and physiology.
    Description: This work was supported by a Postdoctoral Fellowship from the Ford Foundation (J.M.D.), the National Science Foundation under grants OCE 1225801 (J.M.D.) and OCE 1233612 (A.A.), the Ocean and Climate Change Institute of the Woods Hole Oceanographic Institution (C.M.H.), the Sidney Stern Memorial Trust (C.M.H. and A.A.) and an anonymous donor.
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    Interaction between a vertical turbulent jet and a thermocline (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3415-3427, doi:10.1175/JPO-D-16-0035.1.
    Description: The behavior of an axisymmetric vertical turbulent jet in an unconfined stratified environment is studied by means of well-resolved, large-eddy simulations. The stratification is two uniform layers separated by a thermocline. This study considers two cases: when the thermocline thickness is small and on the order of the jet diameter at the thermocline entrance. The Froude number of the jet at the thermocline varies from 0.6 to 1.9, corresponding to the class of weak fountains. The mean jet penetration, stratified turbulent entrainment, jet oscillations, and the generation of internal waves are examined. The mean jet penetration is predicted well by a simple model based on the conservation of the source energy in the thermocline. The entrainment coefficient for the thin thermocline is consistent with the theoretical model for a two-layer stratification with a sharp interface, while for the thick thermocline entrainment is larger at low Froude numbers. The data reveal the presence of a secondary horizontal flow in the upper part of the thick thermocline, resulting in the entrainment of fluid from the thermocline rather than from the upper stratification layer. The spectra of the jet oscillations in the thermocline display two peaks, at the same frequencies for both stratifications at fixed Froude number. For the thick thermocline, internal waves are generated only at the lower frequency, since the higher peak exceeds the maximal buoyancy frequency. For the thin thermocline, conversely, the spectra of the internal waves show the two peaks at low Froude numbers, whereas only one peak at the lower frequency is observed at higher Froude numbers.
    Description: This work was supported by the Linné FLOW Centre at KTH (E. E.), the European Research Council Grant ERC-2013-CoG-616186, TRITOS (L. B.), and the Swedish Research Council (VR), Outstanding Young Researcher Award (L. B.). Support to C. C. was given by the NSF Project OCE-1434041.
    Description: 2017-05-10
    Keywords: Jets ; Mixing ; Oscillations ; Thermocline
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    The annual cycle of the Japan Sea throughflow (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 23–39, doi:10.1175/JPO-D-15-0075.1.
    Description: The mechanism responsible for the annual cycle of the flow through the straits of the Japan Sea is investigated using a two-layer model. Observations show maximum throughflow from summer to fall and minimum in winter, occurring synchronously at the three major straits: Tsushima, Tsugaru, and Soya Straits. This study finds the subpolar winds located to the north of Japan as the leading forcing agent, which first affects the Soya Strait rather than the Tsushima or Tsugaru Straits. The subpolar winds generate baroclinic Kelvin waves along the coastlines of the subpolar gyre, affect the sea surface height at the Soya Strait, and modify the flow through the strait. This causes barotropic adjustment to occur inside the Japan Sea and thus affect the flow at the Tsugaru and Tsushima Straits almost synchronously. The barotropic adjustment mechanism explains well why the observations show a similar annual cycle at the three straits. The annual cycle at the Tsugaru Strait is further shown to be weaker than that in the other two straits based on frictional balance around islands, that is, frictional stresses exerted around an island integrate to zero. In the Tsugaru Strait, the flows induced by the frictional integrals around the northern (Hokkaido) and southern (Honshu) islands are in opposite directions and tend to cancel out. Frictional balance also suggests that the annual cycle at the Tsugaru Strait is likely in phase with that at the Soya Strait because the length scale of the northern island is much shorter than that of the southern island.
    Description: S. Kida is supported by KAKENHI (22106002). B. Qiu is supported by NASA (NNX13AE15G). J. Yang is supported by the U.S. National Science Foundation. X. Lin is supported by the Natural Science Foundation of China (41222037 and U1406401), China’s National Basic Research Priorities Programme (2013CB956202), and the Global Air-Sea Interaction Project (GASI-03-01-01-02).
    Description: 2016-07-01
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    Tidal mixing in the South China Sea : an estimate based on the internal tide energetics (2016)
    American Meteorological Society
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    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 107–124, doi:10.1175/JPO-D-15-0082.1.
    Description: By taking into account the contributions of both locally and remotely generated internal tides, the tidal mixing in the Luzon Strait (LS) and the South China Sea (SCS) is investigated through internal-tide simulation and energetics analysis. A three-dimensional nonhydrostatic high-resolution model driven by four primary tidal constituents (M2, S2, K1, and O1) is used for the internal-tide simulation. The baroclinic energy budget analysis reveals that the internal tides radiated from the LS are the dominant energy source for the tidal dissipation in the SCS. In the LS, the estimated depth-integrated turbulent kinetic energy dissipation exceeds O(1) W m−2 atop the two subsurface ridges, with a dissipation rate of 〉O(10−7) W kg−1 and diapycnal diffusivity of ~O(10−2) m2 s−1. In the SCS, the most intense turbulence occurs in the deep-water basin with a dissipation rate of O(10−8–10−6) W kg−1 and diapycnal diffusivity of O(10−3–10−1) m2 s−1 within the ~2000-m water column above the seafloor as well as in the shelfbreak region with a dissipation rate of O(10−7–10−6) W kg−1 and diapycnal diffusivity of O(10−4–10−3) m2 s−1. These estimated values are consistent with observations reported in previous studies and are at least one order of magnitude larger than those based solely on locally generated internal tides.
    Description: This work is jointly supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (XDA11010304, XDA11010204), the MOST of China (2014CB953904), the Knowledge Innovation Program of the Chinese Academy of Sciences (SQ201305), and National Natural Science Foundation of China (41376021, 41306013). ZL’s participation of this work was supported by the National Natural Science Foundation of China (41476006), the Natural Science Foundation of Fujian Province of China (2015J06010), and the National Basic Research Program of China (2012CB417402).
    Description: 2016-07-01
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    The intertropical convergence zone modulates intense hurricane strikes on the western North Atlantic margin (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 21728, doi:10.1038/srep21728
    Description: Most Atlantic hurricanes form in the Main Development Region between 9°N to 20°N along the northern edge of the Intertropical Convergence Zone (ITCZ). Previous research has suggested that meridional shifts in the ITCZ position on geologic timescales can modulate hurricane activity, but continuous and long-term storm records are needed from multiple sites to assess this hypothesis. Here we present a 3000 year record of intense hurricane strikes in the northern Bahamas (Abaco Island) based on overwash deposits in a coastal sinkhole, which indicates that the ITCZ has likely helped modulate intense hurricane strikes on the western North Atlantic margin on millennial to centennial-scales. The new reconstruction closely matches a previous reconstruction from Puerto Rico, and documents a period of elevated intense hurricane activity on the western North Atlantic margin from 2500 to 1000 years ago when paleo precipitation proxies suggest that the ITCZ occupied a more northern position. Considering that anthropogenic warming is predicted to be focused in the northern hemisphere in the coming century, these results provide a prehistoric analog that an attendant northern ITCZ shift in the future may again return the western North Atlantic margin to an active hurricane interval.
    Description: This research was supported by NSF Awards: OCE-1519578, OCE-1356708, BCS-1118340.
    Keywords: Climate-change impacts ; Forest ecology ; Ocean sciences ; Palaeoclimate
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    Calcium phosphate mineralization is widely applied in crustacean mandibles (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 22118, doi:10.1038/srep22118.
    Description: Crustaceans, like most mineralized invertebrates, adopted calcium carbonate mineralization for bulk skeleton reinforcement. Here, we show that a major part of the crustacean class Malacostraca (which includes lobsters, crayfishes, prawns and shrimps) shifted toward the formation of calcium phosphate as the main mineral at specified locations of the mandibular teeth. In these structures, calcium phosphate is not merely co-precipitated with the bulk calcium carbonate but rather creates specialized structures in which a layer of calcium phosphate, frequently in the form of crystalline fluorapatite, is mounted over a calcareous “jaw”. From a functional perspective, the co-existence of carbonate and phosphate mineralization demonstrates a biomineralization system that provides a versatile route to control the physico-chemical properties of skeletal elements. This system enables the deposition of amorphous calcium carbonate, amorphous calcium phosphate, calcite and apatite at various skeletal locations, as well as combinations of these minerals, to form graded composites materials. This study demonstrates the widespread occurrence of the dual mineralization strategy in the Malacostraca, suggesting that in terms of evolution, this feature of phosphatic teeth did not evolve independently in the different groups but rather represents an early common trait.
    Description: This study was supported in part by grants from the Israel Science Foundation (ISF, Grant 613/13) and the National Institute for Biotechnology in the Negev (NIBN).
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    AMS radiocarbon dating of large za baobabs (Adansonia za) of Madagascar (2016)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 11 (2016): e0146977, doi:10.1371/journal.pone.0146977 .
    Description: The article reports the radiocarbon investigation of Anzapalivoro, the largest za baobab (Adansonia za) specimen of Madagascar and of another za, namely the Big cistern baobab. Several wood samples collected from the large inner cavity and from the outer part/exterior of the tree were investigated by AMS (accelerator mass spectrometry) radiocarbon dating. For samples collected from the cavity walls, the age values increase with the distance into the wood up to a point of maximum age, after which the values decrease toward the outer part. This anomaly of age sequences indicates that the inner cavity of Anzapalivoro is a false cavity, practically an empty space between several fused stems disposed in a ring-shaped structure. The radiocarbon date of the oldest sample was 780 ± 30 bp, which corresponds to a calibrated age of around 735 yr. Dating results indicate that Anzapalivoro has a closed ring-shaped structure, which consists of 5 fused stems that close a false cavity. The oldest part of the biggest za baobab has a calculated age of 900 years. We also disclose results of the investigation of a second za baobab, the Big cistern baobab, which was hollowed out for water storage. This specimen, which consists of 4 fused stems, was found to be around 260 years old.
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    A microscale view of mixing and overturning across the Antarctic Circumpolar Current (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 233–254, doi:10.1175/JPO-D-15-0025.1.
    Description: The relative roles of isoneutral stirring by mesoscale eddies and dianeutral stirring by small-scale turbulence in setting the large-scale temperature–salinity relation of the Southern Ocean against the action of the overturning circulation are assessed by analyzing a set of shear and temperature microstructure measurements across Drake Passage in a “triple decomposition” framework. It is shown that a picture of mixing and overturning across a region of the Antarctic Circumpolar Current (ACC) may be constructed from a relatively modest number of microstructure profiles. The rates of isoneutral and dianeutral stirring are found to exhibit distinct, characteristic, and abrupt variations: most notably, a one to two orders of magnitude suppression of isoneutral stirring in the upper kilometer of the ACC frontal jets and an order of magnitude intensification of dianeutral stirring in the subpycnocline and deepest layers of the ACC. These variations balance an overturning circulation with meridional flows of O(1) mm s−1 across the ACC’s mean thermohaline structure. Isoneutral and dianeutral stirring play complementary roles in balancing the overturning, with isoneutral processes dominating in intermediate waters and the Upper Circumpolar Deep Water and dianeutral processes prevailing in lighter and denser layers.
    Description: The DIMES experiment was funded by the U.K. Natural Environment Research Council (NERC) and the U.S. National Science Foundation (NSF). ACNG acknowledges the support of a Philip Leverhulme Prize, the Royal Society, and the Wolfson Foundation. JDZ acknowledges the support of a NERC Research Fellowship.
    Description: 2016-07-01
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    Biochemical mechanisms for geographical adaptations to novel toxin exposures in butterflyfish (2016)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The definitive version was published in PLoS One 11 (2016): e0154208, doi: 10.1371/journal.pone.0154208
    Description: Some species of butterflyfish have had preyed upon corals for millions of years, yet the mechanism of butterflyfish specialized coral feeding strategy remains poorly understood. Certain butterflyfish have the ability to feed on allelochemically rich soft corals, e.g. Sinularia maxima. Cytochrome P450 (CYP) is the predominant enzyme system responsible for the detoxification of dietary allelochemicals. CYP2-like and CYP3A-like content have been associated with butterflyfish that preferentially consumes allelochemically rich soft corals. To investigate the role of butterflyfish CYP2 and CYP3A enzymes in dietary preference, we conducted oral feeding experiments using homogenates of S. maxima and a toxin isolated from the coral in four species of butterflyfish with different feeding strategies. After oral exposure to the S. maxima toxin 5-episinulaptolide (5ESL), which is not normally encountered in the Hawaiian butterflyfish diet, an endemic specialist, Chaetodon multicinctus experienced 100% mortality compared to a generalist, Chaetodon auriga, which had significantly more (3–6 fold higher) CYP3A-like basal content and catalytic activity. The specialist, Chaetodon unimaculatus, which preferentially feed on S. maxima in Guam, but not in Hawaii, had 100% survival, a significant induction of 8–12 fold CYP3A-like content, and an increased ability (2-fold) to metabolize 5ESL over other species. Computer modeling data of CYP3A4 with 5ESL were consistent with microsomal transformation of 5ESL to a C15-16 epoxide from livers of C. unimaculatus. Epoxide formation correlated with CYP3A-like content, catalytic activity, induction, and NADPH-dependent metabolism of 5ESL. These results suggest a potentially important role for the CYP3A family in butterflyfish-coral diet selection through allelochemical detoxification.
    Description: This work received support from the following sources: Resource Allocation Program of the Agricultural Research Station for UCR to DS; Summer funding by Hilda and George Liebig Environmental Sciences Summer Fellowship and travel grant Albert March Environmental Sciences Scholarship from the University of California, Riverside; and the Chemistry and DMPK CORE of COBRE, P20GM104932 from the National Institute of General Medical Sciences (NIGMS), a component of the National Institutes of Health (NIH) supported the chemistry studies.
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    Evidence for quorum sensing and differential metabolite production by a marine bacterium in response to DMSP (2016)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-25
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in The ISME Journal 10 (2016): 2304–2316, doi:10.1038/ismej.2016.6.
    Description: Microbes, the foundation of the marine foodweb, do not function in isolation, but rather rely on molecular level interactions among species to thrive. Although certain types of interactions between autotrophic and heterotrophic microorganisms have been well documented, the role of specific organic molecules in regulating inter-species relationships and supporting growth are only beginning to be understood. Here, we examine one such interaction by characterizing the metabolic response of a heterotrophic marine bacterium, Ruegeria pomeroyi DSS-3, to growth on dimethylsulfoniopropionate (DMSP), an abundant organosulfur metabolite produced by phytoplankton. When cultivated on DMSP, R. pomeroyi synthesized a quorum-sensing molecule, N-(3-oxotetradecanoyl)-l-homoserine lactone, at significantly higher levels than during growth on propionate. Concomitant with the production of a quorum-sensing molecule, we observed differential production of intra- and extracellular metabolites including glutamine, vitamin B2 and biosynthetic intermediates of cyclic amino acids. Our metabolomics data indicate that R. pomeroyi changes regulation of its biochemical pathways in a manner that is adaptive for a cooperative lifestyle in the presence of DMSP, in anticipation of phytoplankton-derived nutrients and higher microbial density. This behavior is likely to occur on sinking marine particles, indicating that this response may impact the fate of organic matter.
    Description: This research is funded in part by the Gordon and Betty Moore Foundation through Grant GBMF3304 as well as by the National Science Foundation (Grants OCE-0928424 and OCE-1154320).
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    Impact of a localized source of subglacial discharge on the heat flux and submarine melting of a tidewater glacier : a laboratory study (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3155-3163, doi:10.1175/JPO-D-16-0123.1.
    Description: Idealized laboratory experiments have been conducted in a two-layer stratified fluid to investigate the leading-order dynamics that control submarine melting and meltwater export near a vertical ice–ocean interface as a function of subglacial discharge. In summer, the discharge of surface runoff at the base of a glacier (subglacial discharge) generates strong buoyant plumes that rise along the glacier front entraining ambient water along the way. The entrainment enhances the heat transport toward the glacier front and hence the submarine melt rate increases with the subglacial discharge rate. In the laboratory, the effect of subglacial discharge is simulated by introducing freshwater at freezing temperature from a point source at the base of an ice block representing the glacier. The circulation pattern observed both with and without subglacial discharge resembles those observed in previous observational and numerical studies. Buoyant plumes rise vertically until they find either their neutrally buoyant level or the free surface. Hence, the meltwater can deposit within the interior of the water column and not entirely at the free surface, as confirmed by field observations. The heat budget in the tank, calculated following a new framework, gives estimates of submarine melt rate that increase with the subglacial discharge and are in agreement with the directly measured submarine melting. This laboratory study provides the first direct measurements of submarine melt rates for different subglacial discharges, and the results are consistent with the predictions of previous theoretical and numerical studies.
    Description: Support to C. C. was given by the NSF project OCE- 1130008 and OCE-1434041. M. G. received support from the ‘‘Gori’’ Fellowship.
    Description: 2017-04-07
    Keywords: Glaciers ; Buoyancy ; Density currents ; Turbulence ; Laboratory/physical models
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    Smartphone-based distributed data collection enables rapid assessment of shorebird habitat suitability (2016)
    Public Library of Science
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    Publication Date: 2022-05-25
    Description: This is an open access article, free of all copyright. The definitive version was published in PLoS ONE 11 (2016): e0164979, doi: 10.1371/journal.pone.0164979.
    Description: Understanding and managing dynamic coastal landscapes for beach-dependent species requires biological and geological data across the range of relevant environments and habitats. It is difficult to acquire such information; data often have limited focus due to resource constraints, are collected by non-specialists, or lack observational uniformity. We developed an open-source smartphone application called iPlover that addresses these difficulties in collecting biogeomorphic information at piping plover (Charadrius melodus) nest sites on coastal beaches. This paper describes iPlover development and evaluates data quality and utility following two years of collection (n = 1799 data points over 1500 km of coast between Maine and North Carolina, USA). We found strong agreement between field user and expert assessments and high model skill when data were used for habitat suitability prediction. Methods used here to develop and deploy a distributed data collection system have broad applicability to interdisciplinary environmental monitoring and modeling.
    Description: This work was supported by the North Atlantic Landscape Conservation Cooperative through the U.S. Department of the Interior Hurricane Sandy recovery program under the Disaster Relief Appropriations Act of 2013, and the U.S. Geological Survey Coastal and Marine Geology Program.
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    Satellite and in situ salinity : understanding near-surface stratification and subfootprint variability (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 97 (2016): 1391-1407, doi:10.1175/BAMS-D-15-00032.1.
    Description: Remote sensing of salinity using satellite-mounted microwave radiometers provides new perspectives for studying ocean dynamics and the global hydrological cycle. Calibration and validation of these measurements is challenging because satellite and in situ methods measure salinity differently. Microwave radiometers measure the salinity in the top few centimeters of the ocean, whereas most in situ observations are reported below a depth of a few meters. Additionally, satellites measure salinity as a spatial average over an area of about 100 × 100 km2. In contrast, in situ sensors provide pointwise measurements at the location of the sensor. Thus, the presence of vertical gradients in, and horizontal variability of, sea surface salinity complicates comparison of satellite and in situ measurements. This paper synthesizes present knowledge of the magnitude and the processes that contribute to the formation and evolution of vertical and horizontal variability in near-surface salinity. Rainfall, freshwater plumes, and evaporation can generate vertical gradients of salinity, and in some cases these gradients can be large enough to affect validation of satellite measurements. Similarly, mesoscale to submesoscale processes can lead to horizontal variability that can also affect comparisons of satellite data to in situ data. Comparisons between satellite and in situ salinity measurements must take into account both vertical stratification and horizontal variability.
    Description: 2017-02-28
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    Can Australian multiyear droughts and wet spells be generated in the absence of oceanic variability? (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 29 (2016): 6201-6221, doi:10.1175/JCLI-D-15-0694.1.
    Description: Anomalous conditions in the tropical oceans, such as those related to El Niño–Southern Oscillation and the Indian Ocean dipole, have been previously blamed for extended droughts and wet periods in Australia. Yet the extent to which Australian wet and dry spells can be driven by internal atmospheric variability remains unclear. Natural variability experiments are examined to determine whether prolonged extreme wet and dry periods can arise from internal atmospheric and land variability alone. Results reveal that this is indeed the case; however, these dry and wet events are found to be less severe than in simulations incorporating coupled oceanic variability. Overall, ocean feedback processes increase the magnitude of Australian rainfall variability by about 30% and give rise to more spatially coherent rainfall impacts. Over mainland Australia, ocean interactions lead to more frequent extreme events, particularly during the rainy season. Over Tasmania, in contrast, ocean–atmosphere coupling increases mean rainfall throughout the year. While ocean variability makes Australian rainfall anomalies more severe, droughts and wet spells of duration longer than three years are equally likely to occur in both atmospheric- and ocean-driven simulations. Moreover, they are essentially indistinguishable from what one expects from a Gaussian white noise distribution. Internal atmosphere–land-driven megadroughts and megapluvials that last as long as ocean-driven events are also identified in the simulations. This suggests that oceanic variability may be less important than previously assumed for the long-term persistence of Australian rainfall anomalies. This poses a challenge to accurate prediction of long-term dry and wet spells for Australia.
    Description: This study was supported by the Australian Research Council (ARC) under ARC-DP1094784, ARC-DP-150101331, ARC-FL100100214, and funding for C.C.U. from the National Science Foundation under AGS-1602455 and the ARC Centre of Excellence for Climate System Science.
    Description: 2017-02-19
    Keywords: Circulation/ Dynamics ; Atmosphere-ocean interaction ; Atm/Ocean Structure/ Phenomena ; Drought ; Precipitation ; Physical Meteorology and Climatology ; Climate variability ; Forecasting ; Climate prediction ; Variability
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    A theory of the wind-driven Beaufort Gyre variability (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-25
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 3263-3278, doi:10.1175/JPO-D-16-0091.1.
    Description: The halocline of the Beaufort Gyre varies significantly on interannual to decadal time scales, affecting the freshwater content (FWC) of the Arctic Ocean. This study explores the role of eddies in the Ekman-driven gyre variability. Following the transformed Eulerian-mean paradigm, the authors develop a theory that links the FWC variability to the stability of the large-scale gyre, defined as the inverse of its equilibration time. The theory, verified with eddy-resolving numerical simulations, demonstrates that the gyre stability is explicitly controlled by the mesoscale eddy diffusivity. An accurate representation of the halocline dynamics requires the eddy diffusivity of 300 ± 200 m2 s−1, which is lower than what is used in most low-resolution climate models. In particular, on interannual and longer time scales the eddy fluxes and the Ekman pumping provide equally important contributions to the FWC variability. However, only large-scale Ekman pumping patterns can significantly alter the FWC, with spatially localized perturbations being an order of magnitude less efficient. Lastly, the authors introduce a novel FWC tendency diagnostic—the Gyre Index—that can be conveniently calculated using observations located only along the gyre boundaries. Its strong predictive capabilities, assessed in the eddy-resolving model forced by stochastic winds, suggest that the Gyre Index would be of use in interpreting FWC evolution in observations as well as in numerical models.
    Description: GEMacknowledges the support from theHowland Postdoctoral Program Fund at WHOI and the Stanback Fellowship Fund at Caltech.MAS was supported by NSF Grants PLR-1415489 and OCE-1232389. AFT acknowledges support from NASA Award NNN12AA01C.
    Description: 2017-04-20
    Keywords: Arctic ; Eddies ; Ekman pumping/transport ; Large-scale motions ; Ocean circulation ; Stability
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    Analysis of lung microbiota in bronchoalveolar lavage, protected brush and sputum samples from subjects with mild-to-moderate cystic fibrosis Lung Disease (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS 11 (2016): e0149998, doi:10.1371/journal.pone.0149998.
    Description: Individuals with cystic fibrosis (CF) often acquire chronic lung infections that lead to irreversible damage. We sought to examine regional variation in the microbial communities in the lungs of individuals with mild-to-moderate CF lung disease, to examine the relationship between the local microbiota and local damage, and to determine the relationships between microbiota in samples taken directly from the lung and the microbiota in spontaneously expectorated sputum. In this initial study, nine stable, adult CF patients with an FEV1〉50% underwent regional sampling of different lobes of the right lung by bronchoalveolar lavage (BAL) and protected brush (PB) sampling of mucus plugs. Sputum samples were obtained from six of the nine subjects immediately prior to the procedure. Microbial community analysis was performed on DNA extracted from these samples and the extent of damage in each lobe was quantified from a recent CT scan. The extent of damage observed in regions of the right lung did not correlate with specific microbial genera, levels of community diversity or composition, or bacterial genome copies per ml of BAL fluid. In all subjects, BAL fluid from different regions of the lung contained similar microbial communities. In eight out of nine subjects, PB samples from different regions of the lung were also similar in microbial community composition, and were similar to microbial communities in BAL fluid from the same lobe. Microbial communities in PB samples were more diverse than those in BAL samples, suggesting enrichment of some taxa in mucus plugs. To our knowledge, this study is the first to examine the microbiota in different regions of the CF lung in clinically stable individuals with mild-to-moderate CF-related lung disease.
    Description: Support from the Cystic Fibrosis Foundation Research Development Program (STANTO07R0) as a pilot grant to DAH and AA. Research reported in this publication was also supported by grants from the National Institutes of Health to DAH (R01 AI091702 to DAH) and the American Asthma Foundation Scholars Award and CFFT-ASHARE15A0 and R01HL122372 to AA and R01 HL074175 (BAS). The Dartmouth Lung Biology Center and CF Translational Research Core was supported by an Institutional Development Award (IDeA) from the National Institute of General Medical Sciences of the National Institutes of Health under grant number P30GM106394 and by the CFF RDP (CFRDP STANTO11R0).
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    Abundance and distribution of sperm whales in the Canary Islands : can sperm whales in the archipelago sustain the current level of ship-strike mortalities? (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS 11 (2016): e0150660, doi:10.1371/journal.pone.0150660.
    Description: Sperm whales are present in the Canary Islands year-round, suggesting that the archipelago is an important area for this species in the North Atlantic. However, the area experiences one of the highest reported rates of sperm whale ship-strike in the world. Here we investigate if the number of sperm whales found in the archipelago can sustain the current rate of ship-strike mortality. The results of this study may also have implications for offshore areas where concentrations of sperm whales may coincide with high densities of ship traffic, but where ship-strikes may be undocumented. The absolute abundance of sperm whales in an area of 52933 km2, covering the territorial waters of the Canary Islands, was estimated from 2668 km of acoustic line-transect survey using Distance sampling analysis. Data on sperm whale diving and acoustic behaviour, obtained from bio-logging, were used to calculate g(0) = 0.92, this is less than one because of occasional extended periods when whales do not echolocate. This resulted in an absolute abundance estimate of 224 sperm whales (95% log-normal CI 120–418) within the survey area. The recruitment capability of this number of whales, some 2.5 whales per year, is likely to be exceeded by the current ship-strike mortality rate. Furthermore, we found areas of higher whale density within the archipelago, many coincident with those previously described, suggesting that these are important habitats for females and immature animals inhabiting the archipelago. Some of these areas are crossed by active shipping lanes increasing the risk of ship-strikes. Given the philopatry in female sperm whales, replacement of impacted whales might be limited. Therefore, the application of mitigation measures to reduce the ship-strike mortality rate seems essential for the conservation of sperm whales in the Canary Islands.
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    Continental shelf baroclinic instability. Part I : relaxation from upwelling or downwelling (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 551-568, doi:10.1175/JPO-D-15-0047.1.
    Description: There exists a good deal of indirect evidence, from several locations around the world, that there is a substantial eddy field over continental shelves. These eddies appear to have typical swirl velocities of a few centimeters per second and have horizontal scales of perhaps 5–10 km. These eddies are weak compared to typical, wind-driven, alongshore flows but often seem to dominate middepth cross-shelf flows. The idea that motivates the present contribution is that the alongshore wind stress ultimately energizes these eddies by means of baroclinic instabilities, even in cases where obvious intense fronts do not exist. The proposed sequence is that alongshore winds over a stratified ocean cause upwelling or downwelling, and the resulting horizontal density gradients are strong enough to fuel baroclinic instabilities of the requisite energy levels. This idea is explored here by means of a sequence of idealized primitive equation numerical model studies, each driven by a modest, nearly steady, alongshore wind stress applied for about 5–10 days. Different runs vary wind forcing, stratification, bottom slope, bottom friction, and Coriolis parameter. All runs, both upwelling and downwelling, are found to be baroclinically unstable and to have scales compatible with the underlying hypothesis. The model results, combined with physically based scalings, show that eddy kinetic energy generally increases with bottom slope, stratification, wind impulse (time integral of the wind stress), and inverse Coriolis parameter. The dominant length scale of the eddies is found to increase with increasing eddy kinetic energy and to decrease with Coriolis parameter.
    Description: This work was supported by the Woods Hole Oceanographic Institution and by the National Science Foundation, Physical Oceanography section through Grant OCE-1433953.
    Description: 2016-06-09
    Keywords: Geographic location/entity ; Continental shelf/slope ; Variability ; Oceanic variability
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    Enhanced diapycnal diffusivity in intrusive regions of the Drake Passage (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1309-1321, doi:10.1175/JPO-D-15-0068.1.
    Description: Direct measurements of oceanic turbulent parameters were taken upstream of and across Drake Passage, in the region of the Subantarctic and Polar Fronts. Values of turbulent kinetic energy dissipation rate ε estimated by microstructure are up to two orders of magnitude lower than previously published estimates in the upper 1000 m. Turbulence levels in Drake Passage are systematically higher than values upstream, regardless of season. The dissipation of thermal variance χ is enhanced at middepth throughout the surveys, with the highest values found in northern Drake Passage, where water mass variability is the most pronounced. Using the density ratio, evidence for double-diffusive instability is presented. Subject to double-diffusive physics, the estimates of diffusivity using the Osborn–Cox method are larger than ensemble statistics based on ε and the buoyancy frequency.
    Description: This work was supported by grants from the U.S. National Science Foundation.
    Description: 2016-10-05
    Keywords: Geographic location/entity ; Southern Ocean ; Circulation/ Dynamics ; Diapycnal mixing ; Mixing ; Turbulence ; Atm/Ocean Structure/ Phenomena ; Fronts ; Observational techniques and algorithms ; Profilers, oceanic
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    Eddy–wind interaction in the California Current System : dynamics and impacts (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 439-459, doi:10.1175/JPO-D-15-0086.1.
    Description: The summertime California Current System (CCS) is characterized by energetic mesoscale eddies, whose sea surface temperature (SST) and surface current can significantly modify the wind stress and Ekman pumping. Relative importance of the eddy–wind interactions via SST and surface current in the CCS is examined using a high-resolution (7 km) regional coupled model with a novel coupling approach to isolate the small-scale air–sea coupling by SST and surface current. Results show that when the eddy-induced surface current is allowed to modify the wind stress, the spatially averaged surface eddy kinetic energy (EKE) is reduced by 42%, and this is primarily due to enhanced surface eddy drag and reduced wind energy transfer. In contrast, the eddy-induced SST–wind coupling has no significant impact on the EKE. Furthermore, eddy-induced SST and surface current modify the Ekman pumping via their crosswind SST gradient and surface vorticity gradient, respectively. The resultant magnitudes of the Ekman pumping velocity are comparable, but the implied feedback effects on the eddy statistics are different. The surface current-induced Ekman pumping mainly attenuates the amplitude of cyclonic and anticyclonic eddies, acting to reduce the eddy activity, while the SST-induced Ekman pumping primarily affects the propagation. Time mean–rectified change in SST is determined by the altered offshore temperature advection by the mean and eddy currents, but the magnitude of the mean SST change is greater with the eddy-induced current effect. The demonstrated remarkably strong dynamical response in the CCS system to the eddy-induced current–wind coupling indicates that eddy-induced current should play an important role in the regional coupled ocean–atmosphere system.
    Description: We thank NSF for support under GrantsOCE-0960770,OCE-1419235, andOCE-1419306. HS is grateful for the WHOI internal support from the Andrew W. Mellon Foundation Awards for Innovative Research and the additional support from the ONR We thank NSF for support under GrantsOCE-0960770,OCE-1419235, andOCE-1419306. HS is grateful for the WHOI internal support from the Andrew W. Mellon Foundation Awards for Innovative Research and the additional support from the ONR
    Description: 2016-05-30
    Keywords: Atm/Ocean Structure/ Phenomena ; Atmosphere-ocean interaction ; Ekman pumping ; Models and modeling ; Ocean models ; Regional models
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    Lipid remodelling is a widespread strategy in marine heterotrophic bacteria upon phosphorus deficiency (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The International Society for Microbial Ecology, 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ISME Journal 10 (2016): 968–978, doi:10.1038/ismej.2015.172.
    Description: Upon phosphorus (P) deficiency, marine phytoplankton reduce their requirements for P by replacing membrane phospholipids with alternative non-phosphorus lipids. It was very recently demonstrated that a SAR11 isolate also shares this capability when phosphate starved in culture. Yet, the extent to which this process occurs in other marine heterotrophic bacteria and in the natural environment is unknown. Here, we demonstrate that the substitution of membrane phospholipids for a variety of non-phosphorus lipids is a conserved response to P deficiency among phylogenetically diverse marine heterotrophic bacteria, including members of the Alphaproteobacteria and Flavobacteria. By deletion mutagenesis and complementation in the model marine bacterium Phaeobacter sp. MED193 and heterologous expression in recombinant Escherichia coli, we confirm the roles of a phospholipase C (PlcP) and a glycosyltransferase in lipid remodelling. Analyses of the Global Ocean Sampling and Tara Oceans metagenome data sets demonstrate that PlcP is particularly abundant in areas characterized by low phosphate concentrations. Furthermore, we show that lipid remodelling occurs seasonally and responds to changing nutrient conditions in natural microbial communities from the Mediterranean Sea. Together, our results point to the key role of lipid substitution as an adaptive strategy enabling heterotrophic bacteria to thrive in the vast P-depleted areas of the ocean.
    Description: This work was partially supported by grants STORM (CTM2009-09352/MAR), MALASPINA (CSD2008-00077), HOTMIX (CTM2011-30010/MAR), DOREMI (CTM2012-34294) and EcoBGM (CTM2013-48292-C3-3-R) funded by the Spanish Government, GAČR project GA13-11281S and MESOAQUA (228224) funded by the European Union Seventh Framework Program (FP7/2007-2013) and by the Natural Environment Research Council (NERC), UK (NE/M002233/1).
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    Punctuated shutdown of Atlantic Meridional Overturning Circulation during Greenland Stadial 1 (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 25902, doi:10.1038/srep25902.
    Description: The Greenland Stadial 1 (GS-1; ~12.9 to 11.65 kyr cal BP) was a period of North Atlantic cooling, thought to have been initiated by North America fresh water runoff that caused a sustained reduction of North Atlantic Meridional Overturning Circulation (AMOC), resulting in an antiphase temperature response between the hemispheres (the ‘bipolar seesaw’). Here we exploit sub-fossil New Zealand kauri trees to report the first securely dated, decadally-resolved atmospheric radiocarbon (14C) record spanning GS-1. By precisely aligning Southern and Northern Hemisphere tree-ring 14C records with marine 14C sequences we document two relatively short periods of AMOC collapse during the stadial, at ~12,920-12,640 cal BP and 12,050-11,900 cal BP. In addition, our data show that the interhemispheric atmospheric 14C offset was close to zero prior to GS-1, before reaching ‘near-modern’ values at ~12,660 cal BP, consistent with synchronous recovery of overturning in both hemispheres and increased Southern Ocean ventilation. Hence, sustained North Atlantic cooling across GS-1 was not driven by a prolonged AMOC reduction but probably due to an equatorward migration of the Polar Front, reducing the advection of southwesterly air masses to high latitudes. Our findings suggest opposing hemispheric temperature trends were driven by atmospheric teleconnections, rather than AMOC changes.
    Description: This work was part funded by the Foundation for Research, Science and Technology (FRST)—now Ministry for Business, Innovation & Employment (MBIE)-PROP-20224-SFK-UOA), a Royal Society of New Zealand grant, the Australian Research Council (FL100100195 and DP0664898) and the Natural Environment Research Council (NE/H009922/1, NE/I007660/1, NER/A/S/2001/01037 and NE/H007865/1).
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    Stratified turbulence and mixing efficiency in a salt wedge estuary (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1769-1783, doi:10.1175/JPO-D-15-0193.1.
    Description: High-resolution observations of velocity, salinity, and turbulence quantities were collected in a salt wedge estuary to quantify the efficiency of stratified mixing in a high-energy environment. During the ebb tide, a midwater column layer of strong shear and stratification developed, exhibiting near-critical gradient Richardson numbers and turbulent kinetic energy (TKE) dissipation rates greater than 10−4 m2 s−3, based on inertial subrange spectra. Collocated estimates of scalar variance dissipation from microconductivity sensors were used to estimate buoyancy flux and the flux Richardson number Rif. The majority of the samples were outside the boundary layer, based on the ratio of Ozmidov and boundary length scales, and had a mean Rif = 0.23 ± 0.01 (dissipation flux coefficient Γ = 0.30 ± 0.02) and a median gradient Richardson number Rig = 0.25. The boundary-influenced subset of the data had decreased efficiency, with Rif = 0.17 ± 0.02 (Γ = 0.20 ± 0.03) and median Rig = 0.16. The relationship between Rif and Rig was consistent with a turbulent Prandtl number of 1. Acoustic backscatter imagery revealed coherent braids in the mixing layer during the early ebb and a transition to more homogeneous turbulence in the midebb. A temporal trend in efficiency was also visible, with higher efficiency in the early ebb and lower efficiency in the late ebb when the bottom boundary layer had greater influence on the flow. These findings show that mixing efficiency of turbulence in a continuously forced, energetic, free shear layer can be significantly greater than the broadly cited upper bound from Osborn of 0.15–0.17.
    Description: Holleman was supported by the Devonshire Scholars program. The field study and the coauthors’ contributions were supported by NSF Grant OCE 0926427.
    Description: 2016-11-24
    Keywords: Circulation/ Dynamics ; Mixing ; Shear structure/flows ; Turbulence ; Observational techniques and algorithms ; Ship observations
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    Comparison of direct covariance flux measurements from an offshore tower and a buoy (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Journal of Atmospheric and Oceanic Technology 33 (2016): 873-890, doi:10.1175/JTECH-D-15-0109.1.
    Description: Direct covariance flux (DCF) measurements taken from floating platforms are contaminated by wave-induced platform motions that need to be removed before computation of the turbulent fluxes. Several correction algorithms have been developed and successfully applied in earlier studies from research vessels and, most recently, by the use of moored buoys. The validation of those correction algorithms has so far been limited to short-duration comparisons against other floating platforms. Although these comparisons show in general a good agreement, there is still a lack of a rigorous validation of the method, required to understand the strengths and weaknesses of the existing motion-correction algorithms. This paper attempts to provide such a validation by a comparison of flux estimates from two DCF systems, one mounted on a moored buoy and one on the Air–Sea Interaction Tower (ASIT) at the Martha’s Vineyard Coastal Observatory, Massachusetts. The ASIT was specifically designed to minimize flow distortion over a wide range of wind directions from the open ocean for flux measurements. The flow measurements from the buoy system are corrected for wave-induced platform motions before computation of the turbulent heat and momentum fluxes. Flux estimates and cospectra of the corrected buoy data are found to be in very good agreement with those obtained from the ASIT. The comparison is also used to optimize the filter constants used in the motion-correction algorithm. The quantitative agreement between the buoy data and the ASIT demonstrates that the DCF method is applicable for turbulence measurements from small moving platforms, such as buoys.
    Description: This work was funded by the National Science Foundation Grant OCE04-24536 as part of the CLIVAR Mode Water Dynamic Experiment (CLIMODE).
    Keywords: Circulation/ Dynamics ; Turbulence ; Atm/Ocean Structure/ Phenomena ; Boundary layer ; Physical Meteorology and Climatology ; Air-sea interaction ; Observational techniques and algorithms ; Buoy observations ; Quality assurance/control
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    Full circumpolar migration ensures evolutionary unity in the Emperor penguin (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 7 (2016): 11842, doi:10.1038/ncomms11842.
    Description: Defining reliable demographic models is essential to understand the threats of ongoing environmental change. Yet, in the most remote and threatened areas, models are often based on the survey of a single population, assuming stationarity and independence in population responses. This is the case for the Emperor penguin Aptenodytes forsteri, a flagship Antarctic species that may be at high risk continent-wide before 2100. Here, using genome-wide data from the whole Antarctic continent, we reveal that this top-predator is organized as one single global population with a shared demography since the late Quaternary. We refute the view of the local population as a relevant demographic unit, and highlight that (i) robust extinction risk estimations are only possible by including dispersal rates and (ii) colony-scaled population size is rather indicative of local stochastic events, whereas the species’ response to global environmental change is likely to follow a shared evolutionary trajectory.
    Description: This study was undertaken within the framework of the Programme 137 of the Institut Polaire Français Paul-Emile Victor (IPEV), with additional support from the French National Research Agency (ANR) ‘PICASO’ grant (ANR-2010-BLAN-1728-01, PI: Y.L.M.), from Marie Curie Intra European Fellowships (FP7-PEOPLE-IEF-2008, European Commission; project no. 235962 to CLB and FP7-PEOPLE-IEF-2010, European Commission; project no. 252252 to E.T.), from the Centre Scientifique de Monaco through budget allocated to the Laboratoire International Associé 647 ‘BioSensib’ (CSM/CNRS-University of Strasbourg), from the Centre National de la Recherche Scientifique (Programme Zone Atelier de Recherches sur l’Environnement Antarctique et Subantarctique) and from the British Antarctic Survey Ecosystems Programme, NERC (P.N.T.). Logistic and field costs of research were supported by IPEV (C.L.B.), the British Antarctic Survey Ecosystems Programme, NERC (P.N.T.), AWI (D.P.Z.), US NSF grant number NSF 0229638 (P.J.P.).
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    Coral reef soundscapes may not be detectable far from the reef (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 31862, doi:10.1038/srep31862.
    Description: Biological sounds produced on coral reefs may provide settlement cues to marine larvae. Sound fields are composed of pressure and particle motion, which is the back and forth movement of acoustic particles. Particle motion (i.e., not pressure) is the relevant acoustic stimulus for many, if not most, marine animals. However, there have been no field measurements of reef particle motion. To address this deficiency, both pressure and particle motion were recorded at a range of distances from one Hawaiian coral reef at dawn and mid-morning on three separate days. Sound pressure attenuated with distance from the reef at dawn. Similar trends were apparent for particle velocity but with considerable variability. In general, average sound levels were low and perhaps too faint to be used as an orientation cue except very close to the reef. However, individual transient sounds that exceeded the mean values, sometimes by up to an order of magnitude, might be detectable far from the reef, depending on the hearing abilities of the larva. If sound is not being used as a long-range cue, it might still be useful for habitat selection or other biological activities within a reef.
    Description: This work was funded by the Woods Hole Oceanographic Institution Ocean Ventures Fund, the PADI Foundation, the Woods Hole Oceanographic Institution Access To The Sea program, and the National Science Foundation grant OCE-1536782.
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    Cisplatin resistant spheroids model clinically relevant survival mechanisms in ovarian tumors (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS 11 (2016): e0151089, doi: 10.1371/journal.pone.0151089 .
    Description: The majority of ovarian tumors eventually recur in a drug resistant form. Using cisplatin sensitive and resistant cell lines assembled into 3D spheroids we profiled gene expression and identified candidate mechanisms and biological pathways associated with cisplatin resistance. OVCAR-8 human ovarian carcinoma cells were exposed to sub-lethal concentrations of cisplatin to create a matched cisplatin-resistant cell line, OVCAR-8R. Genome-wide gene expression profiling of sensitive and resistant ovarian cancer spheroids identified 3,331 significantly differentially expressed probesets coding for 3,139 distinct protein-coding genes (Fc 〉2, FDR 〈 0.05) (S2 Table). Despite significant expression changes in some transporters including MDR1, cisplatin resistance was not associated with differences in intracellular cisplatin concentration. Cisplatin resistant cells were significantly enriched for a mesenchymal gene expression signature. OVCAR-8R resistance derived gene sets were significantly more biased to patients with shorter survival. From the most differentially expressed genes, we derived a 17-gene expression signature that identifies ovarian cancer patients with shorter overall survival in three independent datasets. We propose that the use of cisplatin resistant cell lines in 3D spheroid models is a viable approach to gain insight into resistance mechanisms relevant to ovarian tumors in patients. Our data support the emerging concept that ovarian cancers can acquire drug resistance through an epithelial-to-mesenchymal transition.
    Description: This work was funded by the NIH NCRR supplement grant P41 RR001395-27S1 (J.W.H.), NSF DBI-1005378 “REU Site: Biological Discovery in Woods Hole”, faculty startup funds from the Office of Research at Oklahoma State University (W.C.), and the Mary Kay Foundation (A.S.B.).
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    Internal waves and mixing near the Kerguelen Plateau (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 417-437, doi:10.1175/JPO-D-15-0055.1.
    Description: In the stratified ocean, turbulent mixing is primarily attributed to the breaking of internal waves. As such, internal waves provide a link between large-scale forcing and small-scale mixing. The internal wave field north of the Kerguelen Plateau is characterized using 914 high-resolution hydrographic profiles from novel Electromagnetic Autonomous Profiling Explorer (EM-APEX) floats. Altogether, 46 coherent features are identified in the EM-APEX velocity profiles and interpreted in terms of internal wave kinematics. The large number of internal waves analyzed provides a quantitative framework for characterizing spatial variations in the internal wave field and for resolving generation versus propagation dynamics. Internal waves observed near the Kerguelen Plateau have a mean vertical wavelength of 200 m, a mean horizontal wavelength of 15 km, a mean period of 16 h, and a mean horizontal group velocity of 3 cm s−1. The internal wave characteristics are dependent on regional dynamics, suggesting that different generation mechanisms of internal waves dominate in different dynamical zones. The wave fields in the Subantarctic/Subtropical Front and the Polar Front Zone are influenced by the local small-scale topography and flow strength. The eddy-wave field is influenced by the large-scale flow structure, while the internal wave field in the Subantarctic Zone is controlled by atmospheric forcing. More importantly, the local generation of internal waves not only drives large-scale dissipation in the frontal region but also downstream from the plateau. Some internal waves in the frontal region are advected away from the plateau, contributing to mixing and stratification budgets elsewhere.
    Description: A.M. was supported by the joint CSIRO-University of Tasmania Quantitative Marine Science (QMS) program and the 2009 CSIRO Wealth from Ocean Flagship Collaborative Fund. K.L.P.’s salary support was provided by Woods Hole Oceanographic Institution bridge support funds. B.M.S. was supported by the Australian Climate Change Science Program.
    Description: 2016-06-07
    Keywords: Geographic location/entity ; Southern Ocean ; Circulation/ Dynamics ; Internal waves ; Mixing ; Wave properties ; Observational techniques and algorithms ; In situ oceanic observations ; Profilers, oceanic
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    Continental shelf baroclinic instability. Part II : oscillating wind forcing (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 569-582, doi:10.1175/JPO-D-15-0048.1.
    Description: Continental shelf baroclinic instability energized by fluctuating alongshore winds is treated using idealized primitive equation numerical model experiments. A spatially uniform alongshore wind, sinusoidal in time, alternately drives upwelling and downwelling and so creates highly variable, but slowly increasing, available potential energy. For all of the 30 model runs, conducted with a wide range of parameters (varying Coriolis parameter, initial stratification, bottom friction, forcing period, wind strength, and bottom slope), a baroclinic instability and subsequent eddy field develop. Model results and scalings show that the eddy kinetic energy increases with wind amplitude, forcing period, stratification, and bottom slope. The dominant alongshore length scale of the eddy field is essentially an internal Rossby radius of deformation. The resulting depth-averaged alongshore flow field is dominated by the large-scale, periodic wind forcing, while the cross-shelf flow field is dominated by the eddy variability. The result is that correlation length scales for alongshore flow are far greater than those for cross-shelf velocity. This scale discrepancy is qualitatively consistent with midshelf observations by Kundu and Allen, among others.
    Description: This work was funded by the Woods Hole Oceanographic Institution and by the National Science Foundation, Physical Oceanography section through Grant OCE-1433953.
    Description: 2016-06-09
    Keywords: Geographic location/entity ; Continental shelf/slope ; Variability ; Oceanic variability
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    The Arctic Ocean spices up (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1277-1284, doi:10.1175/JPO-D-16-0027.1.
    Description: The contemporary Arctic Ocean differs markedly from midlatitude, ice-free, and relatively warm oceans in the context of density-compensating temperature and salinity variations. These variations are invaluable tracers in the midlatitudes, revealing essential fundamental physical processes of the oceans, on scales from millimeters to thousands of kilometers. However, in the cold Arctic Ocean, temperature variations have little effect on density, and a measure of density-compensating variations in temperature and salinity (i.e., spiciness) is not appropriate. In general, temperature is simply a passive tracer, which implies that most of the heat transported in the Arctic Ocean relies entirely on the ocean dynamics determined by the salinity field. It is shown, however, that as the Arctic Ocean warms up, temperature will take on a new role in setting dynamical balances. Under continued warming, there exists the possibility for a regime shift in the mechanisms by which heat is transported in the Arctic Ocean. This may result in a cap on the storage of deep-ocean heat, having profound implications for future predictions of Arctic sea ice.
    Description: Support was provided by the National Science Foundation Division of Polar Programs Award 1350046 and Office of Naval Research Grant Number N00014-12-1-0110.
    Description: 2016-10-05
    Keywords: Geographic location/entity ; Arctic ; Circulation/ Dynamics ; Ocean dynamics
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    Bacterial diversity and community composition from seasurface to subseafloor (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The International Society for Microbial Ecology, 2015. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in ISME Journal 10 (2016): 979–989, doi:10.1038/ismej.2015.175.
    Description: We investigated compositional relationships between bacterial communities in the water column and those in deep-sea sediment at three environmentally distinct Pacific sites (two in the Equatorial Pacific and one in the North Pacific Gyre). Through pyrosequencing of the v4–v6 hypervariable regions of the 16S ribosomal RNA gene, we characterized 450 104 pyrotags representing 29 814 operational taxonomic units (OTUs, 97% similarity). Hierarchical clustering and non-metric multidimensional scaling partition the samples into four broad groups, regardless of geographic location: a photic-zone community, a subphotic community, a shallow sedimentary community and a subseafloor sedimentary community (greater than or equal to1.5 meters below seafloor). Abundance-weighted community compositions of water-column samples exhibit a similar trend with depth at all sites, with successive epipelagic, mesopelagic, bathypelagic and abyssopelagic communities. Taxonomic richness is generally highest in the water-column O2 minimum zone and lowest in the subseafloor sediment. OTUs represented by abundant tags in the subseafloor sediment are often present but represented by few tags in the water column, and represented by moderately abundant tags in the shallow sediment. In contrast, OTUs represented by abundant tags in the water are generally absent from the subseafloor sediment. These results are consistent with (i) dispersal of marine sedimentary bacteria via the ocean, and (ii) selection of the subseafloor sedimentary community from within the community present in shallow sediment.
    Description: This study was funded by the Biological Oceanography Program of the US National Science Foundation (grant OCE-0752336) and by the NSF-funded Center for Dark Energy Biosphere Investigations (grant NSF-OCE-0939564).
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    Seasonal and interannual variations of Irminger ring formation and boundary–interior heat exchange in FLAME (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1717-1734, doi:10.1175/JPO-D-15-0124.1.
    Description: The contribution of warm-core anticyclones shed by the Irminger Current off West Greenland, known as Irminger rings, to the restratification of the upper layers of the Labrador Sea is investigated in the 1/12° Family of Linked Atlantic Models Experiment (FLAME) model. The model output, covering the 1990–2004 period, shows strong similarities to observations of the Irminger Current as well as ring observations at a mooring located offshore of the eddy formation region in 2007–09. An analysis of fluxes in the model shows that while the majority of heat exchange with the interior indeed occurs at the site of the Irminger Current instability, the contribution of the coherent Irminger rings is modest (18%). Heat is provided to the convective region mainly through noncoherent anomalies and enhanced local mixing by the rings facilitating further exchange between the boundary and interior. The time variability of the eddy kinetic energy and the boundary to interior heat flux in the model are strongly correlated to the density gradient between the dense convective region and the more buoyant boundary current. In FLAME, the density variations of the boundary current are larger than those of the convective region, thereby largely controlling changes in lateral fluxes. Synchronous long-term trends in temperature in the boundary and the interior over the 15-yr simulation suggest that the heat flux relative to the temperature of the interior is largely steady on these time scales.
    Description: The authors were supported in this work by the U.S. National Science Foundation.
    Keywords: Geographic location/entity ; North Atlantic Ocean ; Circulation/ Dynamics ; Anticyclones ; Boundary currents ; Convection ; Eddies ; Fluxes
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    Prevalence of influenza A virus in live-captured North Atlantic gray seals : a possible wild reservoir (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Emerging Microbes and Infections 5 (2016): e81, doi:10.1038/emi.2016.77.
    Description: Influenza A virus (IAV) has been associated with multiple unusual mortality events (UMEs) in North Atlantic pinnipeds, frequently attributed to spillover of virus from wild-bird reservoirs. To determine if endemic infection persists outside of UMEs, we undertook a multiyear investigation of IAV in healthy, live-captured Northwest Atlantic gray seals (Halichoerus grypus). From 2013 to 2015, we sampled 345 pups and 57 adults from Cape Cod, MA, USA and Nova Scotia, Canada consistently detecting IAV infection across all groups. There was an overall viral prevalence of 9.0% (95% confidence interval (CI): 6.4%–12.5%) in weaned pups and 5.3% (CI: 1.2%–14.6%) in adults, with seroprevalences of 19.3% (CI: 15.0%–24.5%) and 50% (CI: 33.7%–66.4%), respectively. Positive sera showed a broad reactivity to diverse influenza subtypes. IAV status did not correlate with measures of animal health nor impact animal movement or foraging. This study demonstrated that Northwest Atlantic gray seals are both permissive to and tolerant of diverse IAV, possibly representing an endemically infected wild reservoir population.
    Description: This work was supported in part by National Institute of Allergy and Infectious Diseases (NIAID), the Centers of Excellence for Influenza Research and Surveillance (CEIRS) HHSN272201400008C, MIT Sea Grant Project 2013-DOH-45-LEV, National Science and Engineering Research Council of Canada (NSERC), NMFS #17670-01, NMFS #10080-95 and FWS #53514-13003.
    Keywords: Gray seal ; Halichoerus grypus ; Influenza ; Pinniped ; Reservoir ; Telemetry
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    Satellite-derived ocean thermal structure for the North Atlantic hurricane season (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 144 (2016): 877-896, doi:10.1175/MWR-D-15-0275.1.
    Description: This paper describes a new model (method) called Satellite-derived North Atlantic Profiles (SNAP) that seeks to provide a high-resolution, near-real-time ocean thermal field to aid tropical cyclone (TC) forecasting. Using about 139 000 observed temperature profiles, a spatially dependent regression model is developed for the North Atlantic Ocean during hurricane season. A new step introduced in this work is that the daily mixed layer depth is derived from the output of a one-dimensional Price–Weller–Pinkel ocean mixed layer model with time-dependent surface forcing. The accuracy of SNAP is assessed by comparison to 19 076 independent Argo profiles from the hurricane seasons of 2011 and 2013. The rms differences of the SNAP-estimated isotherm depths are found to be 10–25 m for upper thermocline isotherms (29°–19°C), 35–55 m for middle isotherms (18°–7°C), and 60–100 m for lower isotherms (6°–4°C). The primary error sources include uncertainty of sea surface height anomaly (SSHA), high-frequency fluctuations of isotherm depths, salinity effects, and the barotropic component of SSHA. These account for roughly 29%, 25%, 19%, and 10% of the estimation error, respectively. The rms differences of TC-related ocean parameters, upper-ocean heat content, and averaged temperature of the upper 100 m, are ~10 kJ cm−2 and ~0.8°C, respectively, over the North Atlantic basin. These errors are typical also of the open ocean underlying the majority of TC tracks. Errors are somewhat larger over regions of greatest mesoscale variability (i.e., the Gulf Stream and the Loop Current within the Gulf of Mexico).
    Description: IFP is supported by Grants NSC 101-2628-M-002-001-MY4 and MOST 103-2111-M-002 -002 -MY3. JFP and SRJ were supported by the U.S. Office of Naval Research under the project “Impact of Typhoons on the North Pacific, ITOP.”
    Description: 2016-06-08
    Keywords: Atm/Ocean Structure/ Phenomena ; Atmosphere-ocean interaction ; Oceanic mixed layer ; Tropical cyclones ; Observational techniques and algorithms ; Satellite observations
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    Exploring practical estimates of the ensemble size necessary for particle filters (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Monthly Weather Review 144 (2016): 861-875, doi:10.1175/MWR-D-14-00303.1.
    Description: Particle filtering methods for data assimilation may suffer from the “curse of dimensionality,” where the required ensemble size grows rapidly as the dimension increases. It would, therefore, be useful to know a priori whether a particle filter is feasible to implement in a given system. Previous work provides an asymptotic relation between the necessary ensemble size and an exponential function of , a statistic that depends on observation-space quantities and that is related to the system dimension when the number of observations is large; for linear, Gaussian systems, the statistic can be computed from eigenvalues of an appropriately normalized covariance matrix. Tests with a low-dimensional system show that these asymptotic results remain useful when the system is nonlinear, with either the standard or optimal proposal implementation of the particle filter. This study explores approximations to the covariance matrices that facilitate computation in high-dimensional systems, as well as different methods to estimate the accumulated system noise covariance for the optimal proposal. Since may be approximated using an ensemble from a simpler data assimilation scheme, such as the ensemble Kalman filter, the asymptotic relations thus allow an estimate of the ensemble size required for a particle filter before its implementation. Finally, the improved performance of particle filters with the optimal proposal, relative to those using the standard proposal, in the same low-dimensional system is demonstrated.
    Description: Slivinski was supported by the NSF through Grants DMS-0907904 and DMS-1148284, by ONR through DOD (MURI) Grant N000141110087, and by NCAR’s Advanced Study Program during a collaborative visit to NCAR.
    Description: 2016-05-11
    Keywords: Mathematical and statistical techniques ; Statistical techniques ; Models and modeling ; Data assimilation ; Ensembles ; Nonlinear models
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    The size-distribution of Earth’s lakes (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 29633, doi:10.1038/srep29633.
    Description: Globally, there are millions of small lakes, but a small number of large lakes. Most key ecosystem patterns and processes scale with lake size, thus this asymmetry between area and abundance is a fundamental constraint on broad-scale patterns in lake ecology. Nonetheless, descriptions of lake size-distributions are scarce and empirical distributions are rarely evaluated relative to theoretical predictions. Here we develop expectations for Earth’s lake area-distribution based on percolation theory and evaluate these expectations with data from a global lake census. Lake surface areas ≥8.5 km2 are power-law distributed with a tail exponent (τ = 1.97) and fractal dimension (d = 1.38), similar to theoretical expectations (τ = 2.05; d = 4/3). Lakes 〈8.5 km2 are not power-law distributed. An independently developed regional lake census exhibits a similar transition and consistency with theoretical predictions. Small lakes deviate from the power-law distribution because smaller lakes are more susceptible to dynamical change and topographic behavior at sub-kilometer scales is not self-similar. Our results provide a robust characterization and theoretical explanation for the lake size-abundance relationship, and form a fundamental basis for understanding and predicting patterns in lake ecology at broad scales.
    Description: This paper is based on research supported by the National Science Foundation (OCE-1315201), the Swedish Research Council Formas, and the Carl Tryggers Foundation for Scientific Research.
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    Observations of the transfer of energy and momentum to the oceanic surface boundary layer beneath breaking waves (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 1823-1837, doi:10.1175/JPO-D-15-0165.1.
    Description: Measurements just beneath the ocean surface demonstrate that the primary mechanism by which energy from breaking waves is transmitted into the water column is through the work done by the covariance of turbulent pressure and velocity fluctuations. The convergence in the vertical transport of turbulent kinetic energy (TKE) balances the dissipation rate of TKE at first order and is nearly an order of magnitude greater than the sum of the integrated Eulerian and Stokes shear production. The measured TKE transport is consistent with a simple conceptual model that assumes roughly half of the surface flux of TKE by wave breaking is transmitted to depths greater than the significant wave height. During conditions when breaking waves are inferred, the direction of momentum flux is more aligned with the direction of wave propagation than with the wind direction. Both the energy and momentum fluxes occur at frequencies much lower than the wave band, consistent with the time scales associated with wave breaking. The largest instantaneous values of momentum flux are associated with strong downward vertical velocity perturbations, in contrast to the pressure work, which is associated with strong drops in pressure and upward vertical velocity perturbations.
    Description: Funding for this research was provided by the National Science Foundation Grants OCE-1339032 and OCE-1338518
    Keywords: Circulation/ Dynamics ; Energy transport ; Mixing ; Momentum ; Turbulence ; Wave breaking ; Waves, oceanic
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    Remote sensing of the surface wind field over the coastal ocean via direct calibration of HF radar backscatter power (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 33 (2016): 1377-1392, doi:10.1175/JTECH-D-15-0242.1.
    Description: The calibration and validation of a novel approach to remotely sense surface winds using land-based high-frequency (HF) radar systems are described. Potentially available on time scales of tens of minutes and spatial scales of 2–3 km for wide swaths of the coastal ocean, HF radar–based surface wind observations would greatly aid coastal ocean planners, researchers, and operational stakeholders by providing detailed real-time estimates and climatologies of coastal winds, as well as enabling higher-quality short-term forecasts of the spatially dependent wind field. Such observations are particularly critical for the developing offshore wind energy community. An autonomous surface vehicle was deployed within the Massachusetts Wind Energy Area, located south of Martha’s Vineyard, Massachusetts, for one month, collecting wind observations that were used to test models of wind-wave spreading and HF radar energy loss, thereby empirically relating radar-measured power to surface winds. HF radar–based extractions of the remote wind speed had accuracies of 1.4 m s−1 for winds less than 7 m s−1, within the optimal range of the radar frequency used. Accuracies degraded at higher winds due to low signal-to-noise ratios in the returned power and poor resolution of the model. Pairing radar systems with a range of transmit frequencies with adjustments of the extraction model for additional power and environmental factors would resolve many of the errors observed.
    Description: This analysis was supported by the Massachusetts Clean Energy Center. The HF radar data used were obtained during projects supported by the National Science Foundation, the NOAA Integrated Ocean Observing System (IOOS), and internal funds from the Woods Hole Oceanographic Institution.
    Description: 2016-12-24
    Keywords: Atm/Ocean Structure/ Phenomena ; Wind ; Observational techniques and algorithms ; Algorithms ; In situ oceanic observations ; Radars/Radar observations ; Remote sensing ; Surface observations
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    Evidence of energy and momentum flux from swell to wind (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Physical Oceanography 46 (2016): 2143-2156, doi:10.1175/JPO-D-15-0213.1.
    Description: Measurements of pressure near the surface in conditions of wind sea and swell are reported. Swell, or waves that overrun the wind, produces an upward flux of energy and momentum from waves to the wind and corresponding attenuation of the swell waves. The estimates of growth of wind sea are consistent with existing parameterizations. The attenuation of swell in the field is considerably smaller than existing measurements in the laboratory.
    Keywords: Circulation/ Dynamics ; Pressure ; Wind stress ; Wind waves ; Physical Meteorology and Climatology ; Air-sea interaction
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    Multiplexed spectral imaging of 120 different fluorescent labels (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: This article is distributed under the terms of the Creative Commons public domain dedication. The definitive version was published in PLoS One 11 (2016): e0158495, doi:10.1371/journal.pone.0158495.
    Description: The number of fluorescent labels that can unambiguously be distinguished in a single image when acquired through band pass filters is severely limited by the spectral overlap of available fluorophores. The recent development of spectral microscopy and the application of linear unmixing algorithms to spectrally recorded image data have allowed simultaneous imaging of fluorophores with highly overlapping spectra. However, the number of distinguishable fluorophores is still limited by the unavoidable decrease in signal to noise ratio when fluorescence signals are fractionated over multiple wavelength bins. Here we present a spectral image analysis algorithm to greatly expand the number of distinguishable objects labeled with binary combinations of fluorophores. Our algorithm utilizes a priori knowledge about labeled specimens and imposes a binary label constraint on the unmixing solution. We have applied our labeling and analysis strategy to identify microbes labeled by fluorescence in situ hybridization and here demonstrate the ability to distinguish 120 differently labeled microbes in a single image.
    Description: This work was supported by Grant 2007-3- 13 from the Alfred P. Sloan Foundation (to GGB), National Institutes of Health Grant 1RC1-DE020630 from the National Institute of Dental and Craniofacial Research (NIDCR) (to GGB) and by National Institutes of Health Fellowship 1F31-DE019576 from NIDCR (to AMV).
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    Methanol production by a broad phylogenetic array of marine phytoplankton (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS 11 (2016): e0150820, doi:10.1371/journal.pone.0150820.
    Description: Methanol is a major volatile organic compound on Earth and serves as an important carbon and energy substrate for abundant methylotrophic microbes. Previous geochemical surveys coupled with predictive models suggest that the marine contributions are exceedingly large, rivaling terrestrial sources. Although well studied in terrestrial ecosystems, methanol sources are poorly understood in the marine environment and warrant further investigation. To this end, we adapted a Purge and Trap Gas Chromatography/Mass Spectrometry (P&T-GC/MS) method which allowed reliable measurements of methanol in seawater and marine phytoplankton cultures with a method detection limit of 120 nanomolar. All phytoplankton tested (cyanobacteria: Synechococcus spp. 8102 and 8103, Trichodesmium erythraeum, and Prochlorococcus marinus), and Eukarya (heterokont diatom: Phaeodactylum tricornutum, coccolithophore: Emiliania huxleyi, cryptophyte: Rhodomonas salina, and non-diatom heterokont: Nannochloropsis oculata) produced methanol, ranging from 0.8–13.7 micromolar in culture and methanol per total cellular carbon were measured in the ranges of 0.09–0.3%. Phytoplankton culture time-course measurements displayed a punctuated production pattern with maxima near early stationary phase. Stabile isotope labeled bicarbonate incorporation experiments confirmed that methanol was produced from phytoplankton biomass. Overall, our findings suggest that phytoplankton are a major source of methanol in the upper water column of the world’s oceans.
    Description: This project was solely supported by a grant to TJM from the National Science Foundation (Award# CHE-OCE 1131415).
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    Mitigation of coral reef warming across the central Pacific by the Equatorial Undercurrent : a past and future divide (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 21213, doi:10.1038/srep21213.
    Description: Global climate models (GCMs) predict enhanced warming and nutrient decline across the central tropical Pacific as trade winds weaken with global warming. Concurrent changes in circulation, however, have potential to mitigate these effects for equatorial islands. The implications for densely populated island nations, whose livelihoods depend on ecosystem services, are significant. A unique suite of in situ measurements coupled with state-of-the-art GCM simulations enables us to quantify the mitigation potential of the projected circulation change for three coral reef ecosystems under two future scenarios. Estimated historical trends indicate that over 100% of the large-scale warming to date has been offset locally by changes in circulation, while future simulations predict a warming mitigation effect of only 5–10% depending on the island. The pace and extent to which GCM projections overwhelm historical trends will play a key role in defining the fate of marine ecosystems and island communities across the tropical Pacific.
    Description: Support provided by NSF OCE-1031971 (ALC and KBK). KBK also acknowledges support from NSF OCE-1233282, the DoD Strategic Environmental Research and Development Program (SERDP), the WHOI Ocean and Climate Change Institute Moltz Fellowship, and the Alfred P. Sloan Foundation. Funding for the Pacific Reef Assessment and Monitoring Program, was provided by NOAA’s Coral Reef Conservation Program.
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    Toward quantifying the increasing role oceanic heat in sea ice loss in the new Arctic (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2015. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Bulletin of the American Meteorological Society 96 (2015): 2079–2105, doi:10.1175/BAMS-D-13-00177.1.
    Description: The loss of Arctic sea ice has emerged as a leading signal of global warming. This, together with acknowledged impacts on other components of the Earth system, has led to the term “the new Arctic.” Global coupled climate models predict that ice loss will continue through the twenty-first century, with implications for governance, economics, security, and global weather. A wide range in model projections reflects the complex, highly coupled interactions between the polar atmosphere, ocean, and cryosphere, including teleconnections to lower latitudes. This paper summarizes our present understanding of how heat reaches the ice base from the original sources—inflows of Atlantic and Pacific Water, river discharge, and summer sensible heat and shortwave radiative fluxes at the ocean/ice surface—and speculates on how such processes may change in the new Arctic. The complexity of the coupled Arctic system, and the logistic and technological challenges of working in the Arctic Ocean, require a coordinated interdisciplinary and international program that will not only improve understanding of this critical component of global climate but will also provide opportunities to develop human resources with the skills required to tackle related problems in complex climate systems. We propose a research strategy with components that include 1) improved mapping of the upper- and middepth Arctic Ocean, 2) enhanced quantification of important process, 3) expanded long-term monitoring at key heat-flux locations, and 4) development of numerical capabilities that focus on parameterization of heat-flux mechanisms and their interactions.
    Description: 2016-06-01
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    A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 22541, doi:10.1038/srep22541.
    Description: The rock-hosted, oceanic crustal aquifer is one of the largest ecosystems on Earth, yet little is known about its indigenous microorganisms. Here we provide the first phylogenetic and functional description of an active microbial community residing in the cold oxic crustal aquifer. Using subseafloor observatories, we recovered crustal fluids and found that the geochemical composition is similar to bottom seawater, as are cell abundances. However, based on relative abundances and functional potential of key bacterial groups, the crustal fluid microbial community is heterogeneous and markedly distinct from seawater. Potential rates of autotrophy and heterotrophy in the crust exceeded those of seawater, especially at elevated temperatures (25°C) and deeper in the crust. Together, these results reveal an active, distinct, and diverse bacterial community engaged in both heterotrophy and autotrophy in the oxygenated crustal aquifer, providing key insight into the role of microbial communities in the ubiquitous cold dark subseafloor biosphere. An Author Correction to this article was published on 16 April 2020
    Description: This work was supported by NSF OCE1062006 to JAH, NSF OCE1061934 to PRG, and NSF OCE1061827 to BTG. The Center for Dark Energy Biosphere Investigations (C-DEBI) (OCE-0939564), a National Science Foundation-funded Science and Technology Centers of Excellence also supported the participation of CGW, THL, JPC, JAH, BT, and CHH, as well as JLM and UJ through C-DEBI Postdoctoral Fellowships.
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    CO2 and fire influence tropical ecosystem stability in response to climate change (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 29587, doi:10.1038/srep29587.
    Description: Interactions between climate, fire and CO2 are believed to play a crucial role in controlling the distributions of tropical woodlands and savannas, but our understanding of these processes is limited by the paucity of data from undisturbed tropical ecosystems. Here we use a 28,000-year integrated record of vegetation, climate and fire from West Africa to examine the role of these interactions on tropical ecosystem stability. We find that increased aridity between 28–15 kyr B.P. led to the widespread expansion of tropical grasslands, but that frequent fires and low CO2 played a crucial role in stabilizing these ecosystems, even as humidity changed. This resulted in an unstable ecosystem state, which transitioned abruptly from grassland to woodlands as gradual changes in CO2 and fire shifted the balance in favor of woody plants. Since then, high atmospheric CO2 has stabilized tropical forests by promoting woody plant growth, despite increased aridity. Our results indicate that the interactions between climate, CO2 and fire can make tropical ecosystems more resilient to change, but that these systems are dynamically unstable and potentially susceptible to abrupt shifts between woodland and grassland dominated states in the future.
    Description: This work was supported by NSF grants EAR0601998, EAR0602355, AGS0402010, ATM0401908, ATM0214525, ATM0096232 and AGS1243125 and a Chevron Centennial Fellowship at the University of Texas at Austin awarded to T.M.S.
    Keywords: Climate-change ecology ; Palaeoclimate
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    Interspecific hybridization in pilot whales and asymmetric genetic introgression in northern Globicephala melas under the scenario of global warming (2016)
    Public Library of Science
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in PLoS One 11 (2016): e0160080, doi: 10.1371/journal.pone.0160080 .
    Description: Pilot whales are two cetacean species (Globicephala melas and G. macrorhynchus) whose distributions are correlated with water temperature and partially overlap in some areas like the North Atlantic Ocean. In the context of global warming, distribution range shifts are expected to occur in species affected by temperature. Consequently, a northward displacement of the tropical pilot whale G. macrorynchus is expected, eventually leading to increased secondary contact areas and opportunities for interspecific hybridization. Here, we describe genetic evidences of recurrent hybridization between pilot whales in northeast Atlantic Ocean. Based on mitochondrial DNA sequences and microsatellite loci, asymmetric introgression of G. macrorhynchus genes into G. melas was observed. For the latter species, a significant correlation was found between historical population growth rate estimates and paleotemperature oscillations. Introgressive hybridization, current temperature increases and lower genetic variation in G. melas suggest that this species could be at risk in its northern range. Under increasing environmental and human-mediated stressors in the North Atlantic Ocean, it seems recommendable to develop a conservation program for G. melas.
    Description: LM had a PCTI Grant from the Asturias Regional Government, referenced BP 10-004. MAS was supported by a 2013 FCT Investigator contract through POPH, QREN European Social Fund and the Portuguese Ministry for Science and Education. This study was also supported by a grant from the Principality of Asturias (reference: GRUPIN-2014-093).
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    On the movements of the North Atlantic Subpolar Front in the preinstrumental past (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 29 (2016): 1545-1571, doi:10.1175/JCLI-D-15-0509.1.
    Description: Three sediment records of sea surface temperature (SST) are analyzed that originate from distant locations in the North Atlantic, have centennial-to-multicentennial resolution, are based on the same reconstruction method and chronological assumptions, and span the past 15 000 yr. Using recursive least squares techniques, an estimate of the time-dependent North Atlantic SST field over the last 15 kyr is sought that is consistent with both the SST records and a surface ocean circulation model, given estimates of their respective error (co)variances. Under the authors’ assumptions about data and model errors, it is found that the 10°C mixed layer isotherm, which approximately traces the modern Subpolar Front, would have moved by ~15° of latitude southward (northward) in the eastern North Atlantic at the onset (termination) of the Younger Dryas cold interval (YD), a result significant at the level of two standard deviations in the isotherm position. In contrast, meridional movements of the isotherm in the Newfoundland basin are estimated to be small and not significant. Thus, the isotherm would have pivoted twice around a region southeast of the Grand Banks, with a southwest–northeast orientation during the warm intervals of the Bølling–Allerød and the Holocene and a more zonal orientation and southerly position during the cold interval of the YD. This study provides an assessment of the significance of similar previous inferences and illustrates the potential of recursive least squares in paleoceanography.
    Description: OM acknowledges support from the U.S. National Science Foundation. CW acknowledges support from the European Research Council ERC Grant ACCLIMATE 339108.
    Description: 2016-08-19
    Keywords: Geographic location/entity ; North Atlantic Ocean ; Circulation/ Dynamics ; Fronts ; Mathematical and statistical techniques ; Inverse methods ; Kalman filters ; Variability ; Climate variability ; Oceanic variability
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    Metatranscriptomics reveals temperature-driven functional changes in microbiome impacting cheese maturation rate (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 21871, doi:10.1038/srep21871.
    Description: Traditional cheeses harbour complex microbial consortia that play an important role in shaping typical sensorial properties. However, the microbial metabolism is considered difficult to control. Microbial community succession and the related gene expression were analysed during ripening of a traditional Italian cheese, identifying parameters that could be modified to accelerate ripening. Afterwards, we modulated ripening conditions and observed consistent changes in microbial community structure and function. We provide concrete evidence of the essential contribution of non-starter lactic acid bacteria in ripening-related activities. An increase in the ripening temperature promoted the expression of genes related to proteolysis, lipolysis and amino acid/lipid catabolism and significantly increases the cheese maturation rate. Moreover, temperature-promoted microbial metabolisms were consistent with the metabolomic profiles of proteins and volatile organic compounds in the cheese. The results clearly indicate how processing-driven microbiome responses can be modulated in order to optimize production efficiency and product quality.
    Description: F.D.F. was supported by a grant from Regione Campania within the program “POR CAMPANIA FSE 2007/2013” - project CARINA (Safety sustainability and competitiveness of the agro-food production in Campania) – CUP B25B09000080007.
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    Implications of North Atlantic sea surface salinity for summer precipitation over the U.S. Midwest : mechanisms and predictive value (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 29 (2016): 3143-3159, doi:10.1175/JCLI-D-15-0520.1.
    Description: Moisture originating from the subtropical North Atlantic feeds precipitation throughout the Western Hemisphere. This ocean-to-land moisture transport leaves its imprint on sea surface salinity (SSS), enabling SSS over the subtropical oceans to be used as an indicator of terrestrial precipitation. This study demonstrates that springtime SSS over the northwestern portion of the subtropical North Atlantic significantly correlates with summertime precipitation over the U.S. Midwest. The linkage between springtime SSS and the Midwest summer precipitation is established through ocean-to-land moisture transport followed by a soil moisture feedback over the southern United States. In the spring, high SSS over the northwestern subtropical Atlantic coincides with a local increase in moisture flux divergence. The moisture flux is then directed toward and converges over the southern United States, which experiences increased precipitation and soil moisture. The increased soil moisture influences the regional water cycle both thermodynamically and dynamically, leading to excessive summer precipitation in the Midwest. Thermodynamically, the increased soil moisture tends to moisten the lower troposphere and enhances the meridional humidity gradient north of 36°N. Thus, more moisture will be transported and converged into the Midwest by the climatological low-level wind. Dynamically, the increases in soil moisture over the southern United States enhance the west–east soil moisture gradient eastward of the Rocky Mountains, which can help to intensify the Great Plains low-level jet in the summer, converging more moisture into the Midwest. Owing to these robust physical linkages, the springtime SSS outweighs the leading SST modes in predicting the Midwest summer precipitation and significantly improves rainfall prediction in this region.
    Description: L. L. is supported by the Postdoctoral Scholar Program at the Woods Hole Oceanographic Institution (WHOI), with funding provided by the Ocean and Climate Change Institute (OCCI). R. W. S. is supported by NASA Grant NNX12AF59G S03 and NSF Grant OCE-1129646. C. C. U. is supported by NSF Grant AGS-1355339. K. B. K. is supported by the Alfred P. Sloan Foundation and the James E. and Barbara V. Moltz Fellowship administered by the WHOI OCCI.
    Description: 2016-10-19
    Keywords: Circulation/ Dynamics ; Hydrologic cycle ; Physical Meteorology and Climatology ; Moisture/moisture budget ; Salinity
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    Influence of the decadal variability of the Kuroshio Extension on the atmospheric circulation in the cold season (2016)
    American Meteorological Society
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    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Climate 29 (2016): 2123-2144, doi:10.1175/JCLI-D-15-0511.1.
    Description: The atmospheric response to the Kuroshio Extension (KE) variability during 1979–2012 is investigated using a KE index derived from sea surface height measurements and an eddy-resolving ocean general circulation model hindcast. When the index is positive, the KE is in the stable state, strengthened and shifted northward, with lower eddy kinetic energy, and the Kuroshio–Oyashio Extension (KOE) region is anomalously warm. The reverse holds when the index is negative. Regression analysis shows that there is a coherent atmospheric response to the decadal KE fluctuations between October and January. The KOE warming generates an upward surface heat flux that leads to local ascending motions and a northeastward shift of the zones of maximum baroclinicity, eddy heat and moisture fluxes, and the storm track. The atmospheric response consists of an equivalent barotropic large-scale signal, with a downstream high and a low over the Arctic. The heating and transient eddy anomalies excite stationary Rossby waves that propagate the signal poleward and eastward. There is a warming typically exceeding 0.6 K at 900 hPa over eastern Asia and western United States, which reduces the snow cover by 4%–6%. One month later, in November–February, a high appears over northwestern Europe, and the hemispheric teleconnection bears some similarity with the Arctic Oscillation. Composite analysis shows that the atmospheric response primarily occurs during the stable state of the KE, while no evidence of a significant large-scale atmospheric response is found in the unstable state. Arguments are given to explain this strong asymmetry.
    Description: This research has received funding from the European Union 7th Framework Program (FP7 2007–2013) under Grant Agreement 308299 (NACLIM), from NSF Grant AGS CLD 1035423, and from Agence Nationale de la Recherche under the reference ANR 2011 Blanc SIMI 5-6 014 01.
    Description: 2016-09-23
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    Identification of differentially expressed genes from multipotent epithelia at the onset of an asexual development (2016)
    Nature Publishing Group
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    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Scientific Reports 6 (2016): 27357, doi:10.1038/srep27357.
    Description: Organisms that have evolved alternative modes of reproduction, complementary to the sexual mode, are found across metazoans. The chordate Botryllus schlosseri is an emerging model for asexual development studies. Botryllus can rebuild its entire body from a portion of adult epithelia in a continuous and stereotyped process called blastogenesis. Anatomy and ontogenies of blastogenesis are well described, however molecular signatures triggering this developmental process are entirely unknown. We isolated tissues at the site of blastogenesis onset and from the same epithelia where this process is never triggered. We linearly amplified an ultra-low amount of mRNA (〈10ng) and generated three transcriptome datasets. To provide a conservative landscape of transcripts differentially expressed between blastogenic vs. non-blastogenic epithelia we compared three different mapping and analysis strategies with a de novo assembled transcriptome and partially assembled genome as references, additionally a self-mapping strategy on the dataset. A subset of differentially expressed genes were analyzed and validated by in situ hybridization. The comparison of different analyses allowed us to isolate stringent sets of target genes, including transcripts with potential involvement in the onset of a non-embryonic developmental pathway. The results provide a good entry point to approach regenerative event in a basal chordate.
    Description: This work was supported by AFM Telethon grant (#16611), IRG Marie Curie grant (#276974), ANR (ANR-14-CE02-0019-01) and IDEX Super (INDIBIO). L.R. was supported by an UPMC-EMREGENCE grant and by a FRM grant (#FDT20140931163). A.C. was supported by a FRM grant (ING 20140129231).
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    Resource allocation for Lagrangian tracking (2016)
    American Meteorological Society
    Details
    Publication Date: 2022-05-26
    Description: Author Posting. © American Meteorological Society, 2016. This article is posted here by permission of American Meteorological Society for personal use, not for redistribution. The definitive version was published in Journal of Atmospheric and Oceanic Technology 33 (2016): 1225-1235, doi:10.1175/JTECH-D-15-0115.1.
    Description: Accurate estimation of the transport probabilities among regions in the ocean provides valuable information for understanding plankton transport, the spread of pollutants, and the movement of water masses. Individual-based particle-tracking models simulate a large ensemble of Lagrangian particles and are a common method to estimate these transport probabilities. Simulating a large ensemble of Lagrangian particles is computationally expensive, and appropriately allocating resources can reduce the cost of this method. Two universal questions in the design of studies that use Lagrangian particle tracking are how many particles to release and how to distribute particle releases. A method is presented for tailoring the number and the release location of particles to most effectively achieve the objectives of a study. The method detailed here is a sequential analysis procedure that seeks to minimize the number of particles that are required to satisfy a predefined metric of result quality. The study assesses the result quality as the precision of the estimates for the elements of a transport matrix and also describes how the method may be extended for use with other metrics. Applying this methodology to both a theoretical system and a particle transport model of the Gulf of Maine results in more precise estimates of the transport probabilities with fewer particles than from uniformly or randomly distributing particle releases. The application of this method can help reduce the cost of and increase the robustness of results from studies that use Lagrangian particles.
    Description: This research was supported by the Department of Defense (DoD) through the National Defense Science and Engineering Graduate Fellowship (NDSEG) program and the National Science Foundation through Grant OCE-1459133 and Grant OCE-1031256.
    Description: 2016-12-02
    Keywords: Circulation/ Dynamics ; Lagrangian circulation/transport ; Models and modeling ; Model evaluation/performance ; Ocean models ; Tracers
    Repository Name: Woods Hole Open Access Server
    Type: Article
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    Mechanisms of increased Trichodesmium fitness under iron and phosphorus co-limitation in the present and future ocean (2016)
    Nature Publishing Group
    Details
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Nature Communications 7 (2016): 12081, doi:10.1038/ncomms12081.
    Description: Nitrogen fixation by cyanobacteria supplies critical bioavailable nitrogen to marine ecosystems worldwide; however, field and lab data have demonstrated it to be limited by iron, phosphorus and/or CO2. To address unknown future interactions among these factors, we grew the nitrogen-fixing cyanobacterium Trichodesmium for 1 year under Fe/P co-limitation following 7 years of both low and high CO2 selection. Fe/P co-limited cell lines demonstrated a complex cellular response including increased growth rates, broad proteome restructuring and cell size reductions relative to steady-state growth limited by either Fe or P alone. Fe/P co-limitation increased abundance of a protein containing a conserved domain previously implicated in cell size regulation, suggesting a similar role in Trichodesmium. Increased CO2 further induced nutrient-limited proteome shifts in widespread core metabolisms. Our results thus suggest that N2-fixing microbes may be significantly impacted by interactions between elevated CO2 and nutrient limitation, with broad implications for global biogeochemical cycles in the future ocean.
    Description: Grant support was provided by U.S. National Science Foundation OCE 1260490 to D.A.H., E.A.W. and F.-X.F., and OCE OA 1220484 and G.B. Moore Foundation 3782 and 3934 to M.A.S.
    Repository Name: Woods Hole Open Access Server
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    Coastal dynamics and submarine permafrost in shallow water of the central Laptev Sea, East Siberia (2016)
    Copernicus
    In:  EPIC3The Cryosphere, Copernicus, 9(4), pp. 1449-1462, ISSN: 1994-0416
    Details
    Publication Date: 2024-04-29
    Description: Coastal erosion and flooding transform terrestrial landscapes into marine environments. In the Arctic, these processes inundate terrestrial permafrost with seawater and create submarine permafrost. Permafrost begins to warm under marine conditions, which can destabilize the sea floor and may release greenhouse gases. We report on the transition of terrestrial to submarine permafrost at a site where the timing of inundation can be inferred from the rate of coastline retreat. On Muostakh Island in the central Laptev Sea, East Siberia, changes in annual coastline position have been measured for decades and vary highly spatially. We hypothesize that these rates are inversely related to the inclination of the upper surface of submarine ice-bonded permafrost (IBP) based on the consequent duration of inundation with increasing distance from the shoreline. We compared rapidly eroding and stable coastal sections of Muostakh Island and find permafrost-table inclinations, determined using direct current resistivity, of 1 and 5 %, respectively. Determinations of submarine IBP depth from a drilling transect in the early 1980s were compared to resistivity profiles from 2011. Based on borehole observations, the thickness of unfrozen sediment overlying the IBP increased from 0 to 14m below sea level with increasing distance from the shoreline. The geoelectrical profiles showed thickening of the unfrozen sediment overlying ice-bonded permafrost over the 28 years since drilling took place. We use geoelectrical estimates of IBP depth to estimate permafrost degradation rates since inundation. Degradation rates decreased from over 0.4ma-1 following inundation to around 0.1ma-1 at the latest after 60 to 110 years and remained constant at this level as the duration of inundation increased to 250 years. We suggest that long-term rates are lower than these values, as the depth to the IBP increases and thermal and porewater solute concentration gradients over depth decrease. For the study region, recent increases in coastal erosion rate and changes in benthic temperature and salinity regimes are expected to affect the depth to submarine permafrost, leading to coastal regions with shallower IBP.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
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    Electronic Resource
    Division of Biochemistry, Massachusetts Institute of Technology: Prof. J. M. Buchanan (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1098-1098 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] A DIVISION of Biochemistry in the Department of Biology has recently been started at the Massachusetts Institute of Technology, and Prof. John M. Buchanan, professor of physiological chemistry in the University of Pennsylvania, has been appointed the first professor and head of the Division as from ...
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1038/1701098b0
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  • 91
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    Electronic Resource
    [Book Reviews] (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1089-1089 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] IN various forms, at various intervals, and with various degrees of accuracy, integrals of the 'normal' (Gaussian) distribution function have been tabulated, mainly on account of its fundamental importance in statistical calculations. Nothing like the same attention has been given to the ...
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1038/1701089b0
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  • 92
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    Dynamo Currents and Conductivities in the Earth's Upper Atmosphere (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1093-1094 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] EXPERIMENTAL evidence has been obtained JOrf recently concerning magnetic discontinuities in the .EJ-layer of the ionosphere near the magnetic equator1. This communication deals with the conclusions which can be drawn from these results about electric currents and D.C.-conductivities in the D- and ...
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1038/1701093a0
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  • 93
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    Electronic Resource
    [Obituaries] (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1098-1098 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] WE regret to announce the following deaths : Sir Charles Arden-Close, K.B.E., C.B., C.M.G., F.R.S., formerly director-general of the Ordnance -Survey, on December 19, aged eighty-seven. Mr. J. G. Robb, recently deputy engineer-in-chief of Marconi's Wireless Telegraph Co., Ltd., on December 16, ...
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1038/1701098a0
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  • 94
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    Electronic Resource
    Manchester College of Technology: Jubilee Brochure (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1098-1099 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] IN connexion with the jubilee of the Manchester College of Technology, an illustrated brochure has been issued (pp. 36 ; from the College) giving an excellent account of the origin of the College and its development since the opening of the present building in 1902. Up to 1918 the institution was ...
    Type of Medium: Electronic Resource
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  • 95
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    The Night Sky in January (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1100-1100 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] FULL moon occurs on Jan. Od. 05h. 05m., U.T., and also on Jan. 29d. 23h. 44m., and new moon on Jan. 15d. 14h. 08m. The following conjunctions with the moon take place : Jan. 9d. 09h., Saturn 8 N. ; Jan. 19d. Olh., Mars 4 S. ; Jan. 19d. Olh., Venus 4 S. ; Jan. 23d. 02h., Jupiter 7 S. In addition to ...
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1038/1701100b0
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  • 96
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    Advisory Committee on Arid Zone Research: Meeting in London (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1103-1104 
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    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] THE Advisory Committee on Arid Zone Research set up by the United Nations Educational, Scientific and Cultural Organization held its fourth meeting in the Royal Society's rooms, Burlington House, London, during September 29-October 1. Following its former policy, the Committee's recommendations ...
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1038/1701103b0
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    Tercentenary of the Leopoldina Academy, Schweinfurt (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1105-1107 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] THE tercentenary of the foundation of the Leopoldina Academy in Schweinfurt, Bavaria, in the West Zone of Germany, was commemorated during July 13-15 under the auspices of the civic authorities and Historical Society of the town. This was in the nature of a Nachfeier to the main celebrations at ...
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    URL: http://dx.doi.org/10.1038/1701105a0
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    Determination of Neutron Resonance Parameters from Measurements of the Absorption Integral: Application to the Main Resonance of Uranium-238 (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1117-1118 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] If the resonance is sharp, that is, the width is small compared to the resonance energy, the asymptotic behaviour of A(ri) for large n has been shown to be Aas - (7ma0F2)1/2. (2) In treating the results of absorption integral measurements, it is convenient to express them in the form : y = ...
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    URL: http://dx.doi.org/10.1038/1701117a0
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  • 99
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    Electronic Resource
    Origin and Development of Axillary Buds in Jute (Corchorus capsularis) (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1128-1128 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] In the branching variety, D154, buds develop from a portion of apical meristem detached in the axils of leaves during vacuolation and growth, as described by Wardlaw in Matteuccia? and found in a great number of plants45 (Fig. 1). Such a detached meristem can be seen as 'shell zone'6 quite early, ...
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    URL: http://dx.doi.org/10.1038/1701128a0
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    Electronic Resource
    A Test for Montmorillonite (1952)
    [s.l.] : Nature Publishing Group
    Nature 170 (1952), S. 1130-1131 
    Details
    ISSN: 1476-4687
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Notes: [Auszug] The hysteresis observed on drying is due to a decrease of the internal surface, which takes place in a random way and leads to the phenomenon of random inter-stratification in the re-solvated mineral. In consequence of this, the dried mineral also shows a marked decrease in exchange capacity due to ...
    Type of Medium: Electronic Resource
    URL: http://dx.doi.org/10.1038/1701130a0
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