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  • Institute of Physics  (2,239)
  • Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu  (1,780)
  • American Association for the Advancement of Science (AAAS)
  • Frontiers Media
  • MDPI Publishing
  • Molecular Diversity Preservation International
  • PANGAEA
  • 2020-2023  (1,927)
  • 1935-1939  (2,257)
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  • 1
    Publication Date: 2022-09-22
    Description: This dataset contains PISM simulation results of the Antarctic Ice Sheet based on code release v1.0-paleo-ensemble (https://doi.org/10.5281/zenodo.3574033). PISM is the open-source Parallel Ice Sheet Model developed mainly at UAF, USA and PIK, Germany. See documentation in https://www.pism.io. These are additional netCDF data from the same ensemble simulations already stored in doi:10.1594/PANGAEA.909728. 1) 1000-year snapshots since 125000 years before present, of ice thickness, bed topography, change in bed topography, floating/grounded mask, surface elevation, basal melt rate and vertically averaged velocity magnitude (SIA+SSA) (16GB) 2) 5000-year snapshots since 125000 years before present, SSA velocity components in x and y direction (8GB)
    Type: info:eu-repo/semantics/workingPaper
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  • 2
    Publication Date: 2022-05-25
    Description: Dataset: GP15 TDS and OCS Leg 1
    Description: This dataset includes total dissolved sulfide (TDS) and carbonyl sulfide (OCS) data from Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) conducted on R/V Roger Revelle from September to October 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873908
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737342
    Repository Name: Woods Hole Open Access Server
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  • 3
    Publication Date: 2022-05-25
    Description: Dataset: GP15 TDS and OCS Leg 2
    Description: This dataset includes total dissolved sulfide (TDS) and carbonyl sulfide (OCS) data from Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) conducted on R/V Roger Revelle from October to November 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873927
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737342
    Repository Name: Woods Hole Open Access Server
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  • 4
    Publication Date: 2022-05-25
    Description: Dataset: GP15 pAVS and pCRS Leg 1
    Description: This dataset includes water column particulate Acid-Volatile Sulfide (pAVS) and Chromium Reducible Sulfide (pCRS) data from a McLane pump from Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) conducted on R/V Roger Revelle from September to October 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873765
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737342
    Repository Name: Woods Hole Open Access Server
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  • 5
    Publication Date: 2022-05-25
    Description: Dataset: GP15 pAVS and pCRS Leg 2
    Description: This dataset includes water column particulate Acid-Volatile Sulfide (pAVS) and Chromium Reducible Sulfide (pCRS) data from a McLane pump from Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) conducted on R/V Roger Revelle from October to November 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873792
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737342
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Clayton, S., Alexander, H., Graff, J. R., Poulton, N. J., Thompson, L. R., Benway, H., Boss, E., & Martiny, A. Bio-GO-SHIP: the time is right to establish global repeat sections of ocean biology. Frontiers in Marine Science, 8, (2022): 767443, https://doi.org/10.3389/fmars.2021.767443.
    Description: In this article, we present Bio-GO-SHIP, a new ocean observing program that will incorporate sustained and consistent global biological ocean observations into the Global Ocean Ship-based Hydrographic Investigations Program (GO-SHIP). The goal of Bio-GO-SHIP is to produce systematic and consistent biological observations during global ocean repeat hydrographic surveys, with a particular focus on the planktonic ecosystem. Ocean plankton are an essential component of the earth climate system, form the base of the oceanic food web and thereby play an important role in influencing food security and contributing to the Blue Economy. Despite its importance, ocean biology is largely under-sampled in time and space compared to physical and chemical properties. This lack of information hampers our ability to understand the role of plankton in regulating biogeochemical processes and fueling higher trophic levels, now and in future ocean conditions. Traditionally, many of the methods used to quantify biological and ecosystem essential ocean variables (EOVs), measures that provide valuable information on the ecosystem, have been expensive and labor- and time-intensive, limiting their large-scale deployment. In the last two decades, new technologies have been developed and matured, making it possible to greatly expand our biological ocean observing capacity. These technologies, including cell imaging, bio-optical sensors and 'omic tools, can be combined to provide overlapping measurements of key biological and ecosystem EOVs. New developments in data management and open sharing can facilitate meaningful synthesis and integration with concurrent physical and chemical data. Here we outline how Bio-GO-SHIP leverages these technological advances to greatly expand our knowledge and understanding of the constituents and function of the global ocean plankton ecosystem.
    Description: The Bio-GO-SHIP pilot program was funded under the National Oceanographic Partnership Program as an inter-agency partnership between NOAA and NASA, with the US Integrated Ocean Observing System and NOAA's Global Ocean Monitoring and Observing program (HA, SC, JG, AM, and NP). HA was supported by a WHOI Independent Research and Development award. AM was supported by funding from NSF OCE-1848576 and 1948842 and NASA 80NSSC21K1654. JG was funded by NASA from grants 80NSSC17K0568 and NNX15AAF30G. LT was supported by award NA06OAR4320264 06111039 to the Northern Gulf Institute by NOAA's Office of Oceanic and Atmospheric Research, U.S. Department of Commerce.
    Keywords: Biological oceanography ; Plankton ecosystems ; Ocean observing ; Repeat hydrography ; GO-SHIP program
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lamborg, C. H., Hansel, C. M., Bowman, K. L., Voelker, B. M., Marsico, R. M., Oldham, V. E., Swarr, G. J., Zhang, T., & Ganguli, P. M. Dark reduction drives evasion of mercury from the ocean. Frontiers in Environmental Chemistry, 2, (2021): 659085, https://doi.org/10.3389/fenvc.2021.659085.
    Description: Much of the surface water of the ocean is supersaturated in elemental mercury (Hg0) with respect to the atmosphere, leading to sea-to-air transfer or evasion. This flux is large, and nearly balances inputs from the atmosphere, rivers and hydrothermal vents. While the photochemical production of Hg0 from ionic and methylated mercury is reasonably well-studied and can produce Hg0 at fairly high rates, there is also abundant Hg0 in aphotic waters, indicating that other important formation pathways exist. Here, we present results of gross reduction rate measurements, depth profiles and diel cycling studies to argue that dark reduction of Hg2+ is also capable of sustaining Hg0 concentrations in the open ocean mixed layer. In locations where vertical mixing is deep enough relative to the vertical penetration of UV-B and photosynthetically active radiation (the principal forms of light involved in abiotic and biotic Hg photoreduction), dark reduction will contribute the majority of Hg0 produced in the surface ocean mixed layer. Our measurements and modeling suggest that these conditions are met nearly everywhere except at high latitudes during local summer. Furthermore, the residence time of Hg0 in the mixed layer with respect to evasion is longer than that of redox, a situation that allows dark reduction-oxidation to effectively set the steady-state ratio of Hg0 to Hg2+ in surface waters. The nature of these dark redox reactions in the ocean was not resolved by this study, but our experiments suggest a likely mechanism or mechanisms involving enzymes and/or important redox agents such as reactive oxygen species and manganese (III).
    Description: This work was supported by NSF Grant OCE-1355720 (to CH, CL, and BV).
    Keywords: Mercury ; Evasion ; Elemental ; Dark ; Ocean ; Reactive oxygen species ; Manganese ; Global model
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Barry, P. H., De Moor, J. M., Chiodi, A., Aguilera, F., Hudak, M. R., Bekaert, D. V., Turner, S. J., Curtice, J., Seltzer, A. M., Jessen, G. L., Osses, E., Blamey, J. M., Amenabar, M. J., Selci, M., Cascone, M., Bastianoni, A., Nakagawa, M., Filipovich, R., Bustos, E., Schrenk, M. O. , Buongiorno, J., Ramírez, C. J., Rogers, T. J., Lloyd, K. G. & Giovannelli, D. The helium and carbon isotope characteristics of the Andean Convergent Margin. Frontiers in Earth Science, 10, (2022): 897267, https://doi.org/10.3389/feart.2022.897267.
    Description: Subduction zones represent the interface between Earth’s interior (crust and mantle) and exterior (atmosphere and oceans), where carbon and other volatile elements are actively cycled between Earth reservoirs by plate tectonics. Helium is a sensitive tracer of volatile sources and can be used to deconvolute mantle and crustal sources in arcs; however it is not thought to be recycled into the mantle by subduction processes. In contrast, carbon is readily recycled, mostly in the form of carbon-rich sediments, and can thus be used to understand volatile delivery via subduction. Further, carbon is chemically-reactive and isotope fractionation can be used to determine the main processes controlling volatile movements within arc systems. Here, we report helium isotope and abundance data for 42 deeply-sourced fluid and gas samples from the Central Volcanic Zone (CVZ) and Southern Volcanic Zone (SVZ) of the Andean Convergent Margin (ACM). Data are used to assess the influence of subduction parameters (e.g., crustal thickness, subduction inputs, and convergence rate) on the composition of volatiles in surface volcanic fluid and gas emissions. He isotopes from the CVZ backarc range from 0.1 to 2.6 RA (n = 23), with the highest values in the Puna and the lowest in the Sub-Andean foreland fold-and-thrust belt. Atmosphere-corrected He isotopes from the SVZ range from 0.7 to 5.0 RA (n = 19). Taken together, these data reveal a clear southeastward increase in 3He/4He, with the highest values (in the SVZ) falling below the nominal range associated with pure upper mantle helium (8 ± 1 RA), approaching the mean He isotope value for arc gases of (5.4 ± 1.9 RA). Notably, the lowest values are found in the CVZ, suggesting more significant crustal inputs (i.e., assimilation of 4He) to the helium budget. The crustal thickness in the CVZ (up to 70 km) is significantly larger than in the SVZ, where it is just ∼40 km. We suggest that crustal thickness exerts a primary control on the extent of fluid-crust interaction, as helium and other volatiles rise through the upper plate in the ACM. We also report carbon isotopes from (n = 11) sites in the CVZ, where δ13C varies between −15.3‰ and −1.2‰ [vs. Vienna Pee Dee Belemnite (VPDB)] and CO2/3He values that vary by over two orders of magnitude (6.9 × 108–1.7 × 1011). In the SVZ, carbon isotope ratios are also reported from (n = 13) sites and vary between −17.2‰ and −4.1‰. CO2/3He values vary by over four orders of magnitude (4.7 × 107–1.7 × 1012). Low δ13C and CO2/3He values are consistent with CO2 removal (e.g., calcite precipitation and gas dissolution) in shallow hydrothermal systems. Carbon isotope fractionation modeling suggests that calcite precipitation occurs at temperatures coincident with the upper temperature limit for life (122°C), suggesting that biology may play a role in C-He systematics of arc-related volcanic fluid and gas emissions.
    Description: This work was principally supported by the NSF-FRES award 2121637 to PB, KL, and JM. Field work was also supported by award G-2016-7206 from the Alfred P. Sloan Foundation and the Deep Carbon Observatory to PB, KL, DG, and JM. Additional support came from The National Fund for Scientific and Technological Development of Chile (FONDECYT) Grant 11191138 (The National Research and Development Agency of Chile, ANID Chile), and COPAS COASTAL ANID FB210021 to GJ. DG was partially supported by funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program Grant Agreement No. 948972—COEVOLVE—ERC-2020-STG.
    Keywords: Helium ; Carbon ; SVZ ; CVZ ; Andes (Argentina and Chile)
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Rathore, S., Goyal, R., Jangir, B., Ummenhofer, C., Feng, M., & Mishra, M. Interactions between a marine heatwave and tropical cyclone Amphan in the Bay of Bengal in 2020. Frontiers in Climate, 4, (2022): 861477, https://doi.org/10.3389/fclim.2022.861477.
    Description: Interactions are diagnosed between a marine heatwave (MHW) event and tropical super cyclone Amphan in the Bay of Bengal. In May 2020, an MHW developed in the Bay of Bengal driven by coupled ocean-atmosphere processes which included shoaling of the mixed layer depth due to reduced wind speed, increased net surface shortwave radiation flux into the ocean, increased upper ocean stratification, and increased sub-surface warming. Ocean temperature, rather than salinity, dominated the stratification that contributed to the MHW development and the subsurface ocean warming that also increased tropical cyclone heat potential. The presence of this strong MHW with sea surface temperature anomalies 〉2.5°C in the western Bay of Bengal coincided with the cyclone track and facilitated the rapid intensification of tropical cyclone Amphan to a super cyclone in just 24 h. This rapid intensification of a short-lived tropical cyclone, with a lifespan of 5 days over the ocean, is unprecedented in the Bay of Bengal during the pre-monsoon period (March-May). As the cyclone approached landfall in northern India, the wind-induced mixing deepened the mixed layer, cooled the ocean's surface, and reduced sub-surface warming in the bay, resulting in the demise of the MHW. This study provides new perspectives on the interactions between MHWs and tropical cyclones that could aid in improving the current understanding of compound extreme events that have severe socio-economic consequences in affected countries.
    Description: CU acknowledges support from the James E. and Barbara V. Moltz Fellowship for Climate-Related Research and the Independent Research & Development Program at WHOI. MF was supported by the Centre for Southern Hemisphere Oceans Research (CSHOR), which is a joint initiative between the Qingdao National Laboratory for Marine Science and Technology (QNLM), CSIRO, University of New South Wales, and the University of Tasmania.
    Keywords: Compound extreme events ; Marine heatwave ; Tropical cyclone ; Amphan ; Fani ; Super cyclone ; Rapid intensification ; Extremely severe cyclone
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  • 10
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Großelindemann, H., Ryan, S., Ummenhofer, C., Martin, T., & Biastoch, A. Marine Heatwaves and their depth structures on the Northeast U.S. continental shelf. Frontiers in Climate, 4, (2022): 857937, https://doi.org/10.3389/fclim.2022.857937.
    Description: Marine Heatwaves (MHWs) are ocean extreme events, characterized by anomalously high temperatures, which can have significant ecological impacts. The Northeast U.S. continental shelf is of great economical importance as it is home to a highly productive ecosystem. Local warming rates exceed the global average and the region experienced multiple MHWs in the last decade with severe consequences for regional fisheries. Due to the lack of subsurface observations, the depth-extent of MHWs is not well-known, which hampers the assessment of impacts on pelagic and benthic ecosystems. This study utilizes a global ocean circulation model with a high-resolution (1/20°) nest in the Atlantic to investigate the depth structure of MHWs and associated drivers on the Northeast U.S. continental shelf. It is shown that MHWs exhibit varying spatial extents, with some only occurring at depth. The highest intensities are found around 100 m depth with temperatures exceeding the climatological mean by up to 7°C, while surface intensities are typically smaller (around 3°C). Distinct vertical structures are associated with different spatial MHW patterns and drivers. Investigation of the co-variability of temperature and salinity reveals that over 80% of MHWs at depth (〉50 m) coincide with extreme salinity anomalies. Two case studies provide insight into opposing MHW patterns at the surface and at depth, being forced by anomalous air-sea heat fluxes and Gulf Stream warm core ring interaction, respectively. The results highlight the importance of local ocean dynamics and the need to realistically represent them in climate models.
    Description: This work was supported by a DAAD RISE Worldwide fellowship (to HG), a Feodor-Lynen Fellowship by the Alexander von Humboldt Foundation and the WHOI Postdoctoral Scholar program (to SR), and the James E. and Barbara V. Moltz Fellowship for Climate-Related Research (to CU). Franziska Schwarzkopf performed the integration of the OGCM simulations, which was performed on the Earth System Modeling Project (ESM) partition of the supercomputer JUWELS at the Jülich Supercomputing Centre (JSC).
    Keywords: Marine heatwaves ; Northeast U.S. continental shelf ; Ecosystem impacts ; Subsurface marine heatwaves ; Gulf Stream warm core rings
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  • 11
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-07
    Description: Dataset: Seagrass surveys of blade height
    Description: These data are from seagrass surveys of blade height around artificial reefs in shallow (less than 4 meters) coastal waters in The Bight of Old Robinson, off of Abaco Island, The Bahamas from May to December 2021. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873092
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1948622
    Keywords: seagrass ; artificial reefs ; blade height
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  • 12
    Publication Date: 2022-11-09
    Description: Dataset: Luminoxyscape environmental
    Description: In this dataset, we analyzed daytime casts (09:00-16:00) of both discrete bottle data and continuous CTD casts from CalCOFI stations restricted to an area from La Jolla, California to Point Conception and 215 km maximum offshore. This dataset has combined bottle and CTD casts to represent the date range 1984-2019. We used the oxygen and irradiance measurements to determine the visual luminoxyscape for each of the larval species. This range was bounded by the oxygen (partial pressure) where the pO2 would permit 50% minimum retinal function (V50; 13, 7.2, 10.2, and 6.8 kPa for larvae of 'Doryteuthis opalescens', 'Octopus bimaculatus', 'Metacarcinus gracilis', and 'Pleuroncodes planipes', respectively), and where there is sufficient irradiance for a visual response (0.0311 µmol photons m-2 s-1) for each species. Additionally, oxygen limits for metabolism were used to determine the depth of occurrence of the Pcrit (the oxygen below which the animal cannot maintain a constant metabolic rate). The depths of occurrence for metabolic limits were determined for larvae of 'D. opalescens' and 'O. bimaculatus'. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/860397
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1829623
    Description: 2022-12-31
    Keywords: Vision ; Marine invertebrate ; Larvae ; Crustacean ; Cephalopod
    Repository Name: Woods Hole Open Access Server
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  • 13
    Publication Date: 2022-11-09
    Description: Dataset: Luminoxyscape maximum depth
    Description: In this dataset, the maximum depths of the visual luminoxyscape for four species of marine invertebrate larvae were recorded. Data in this study are from CalCOFI stations restricted to an area from La Jolla, California to Point Conception and 215 kilometers maximum offshore (Station 60). We analyzed daytime casts (09:00-16:00) of both discrete bottle data and continuous CTD casts to represent the date range of 1984-2019 and used the oxygen and irradiance measurements to determine the visual luminoxyscape for each of the larval species. This range was bounded by the oxygen (partial pressure) where the pO2 would permit 50% minimum retinal function (V50; 13, 7.2, 10.2, and 6.8 kPa for larvae of 'Doryteuthis opalescens', 'Octopus bimaculatus', 'Metacarcinus gracilis', and 'Pleuroncodes planipes', respectively), and where there is sufficient irradiance for a visual response (0.0311 µmol photons m-2 s-1) for each species. Additionally, oxygen limits for metabolism were used to determine the depth of occurrence of the Pcrit (the oxygen below which the animal cannot maintain a constant metabolic rate). The depths of occurrence for metabolic limits were determined for larvae of 'D. opalescens' and 'O. bimaculatus'. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/859867
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1829623
    Keywords: Vision ; Marine invertebrate ; Larvae ; Crustacean ; Cephalopod
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  • 14
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Smith, A. R., Mueller, R., Fisk, M. R., & Colwell, F. S. Ancient metabolisms of a thermophilic subseafloor bacterium. Frontiers in Microbiology, 12, (2021): 764631, https://doi.org/10.3389/fmicb.2021.764631.
    Description: The ancient origins of metabolism may be rooted deep in oceanic crust, and these early metabolisms may have persisted in the habitable thermal anoxic aquifer where conditions remain similar to those when they first appeared. The Wood–Ljungdahl pathway for acetogenesis is a key early biosynthetic pathway with the potential to influence ocean chemistry and productivity, but its contemporary role in oceanic crust is not well established. Here, we describe the genome of a novel acetogen from a thermal suboceanic aquifer olivine biofilm in the basaltic crust of the Juan de Fuca Ridge (JdFR) whose genome suggests it may utilize an ancient chemosynthetic lifestyle. This organism encodes the genes for the complete canonical Wood–Ljungdahl pathway, but is potentially unable to use sulfate and certain organic carbon sources such as lipids and carbohydrates to supplement its energy requirements, unlike other known acetogens. Instead, this organism may use peptides and amino acids for energy or as organic carbon sources. Additionally, genes involved in surface adhesion, the import of metallic cations found in Fe-bearing minerals, and use of molecular hydrogen, a product of serpentinization reactions between water and olivine, are prevalent within the genome. These adaptations are likely a reflection of local environmental micro-niches, where cells are adapted to life in biofilms using ancient chemosynthetic metabolisms dependent on H2 and iron minerals. Since this organism is phylogenetically distinct from a related acetogenic group of Clostridiales, we propose it as a new species, Candidatus Acetocimmeria pyornia.
    Description: Metagenome sequencing was made possible by the Deep Carbon Observatory Census of Deep Life supported by the Alfred P. Sloan Foundation and was performed at the Marine Biological Laboratory (Woods Hole, MA, United States). This work was funded by NASA grant NNX08AO22G and a graduate fellowship from the NSF Center for Dark Energy Biosphere Investigations. The flow cells were funded under J0972A from the U.S. Science Support Program of Joint Oceanographic Institutions.
    Keywords: Metabolism ; Carbon fixation ; Acetogenesis ; Bacteria ; Seafloor ; Hydrogen ; Amino acid ; Clostridia
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  • 15
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johri, S., Carnevale, M., Porter, L., Zivian, A., Kourantidou, M., Meyer, E. L., Seevers, J., & Skubel, R. A. Pathways to justice, equity, diversity, and inclusion in marine science and conservation. Frontiers in Marine Science, 8, (2021): 696180, https://doi.org/10.3389/fmars.2021.696180.
    Description: Marine conservation sciences have traditionally been, and remain, non-diverse work environments with many barriers to justice, equity, diversity, and inclusion (JEDI). These barriers disproportionately affect entry of early career scientists and practitioners and limit the success of marine conservation professionals from under-represented, marginalized, and overburdened groups. These groups specifically include women, LGBTQ+, Black, Indigenous, and people of color (BIPOC). However, the issues also arise from the global North/South and East/West divide with under-representation of scientists from the South and East in the global marine conservation and science arena. Persisting inequities in conservation, along with a lack of inclusiveness and diversity, also limit opportunities for innovation, cross-cultural knowledge exchange, and effective implementation of conservation and management policies. As part of its mandate to increase diversity and promote inclusion of underrepresented groups, the Diversity and Inclusion committee of the Society for Conservation Biology-Marine Section (SCB Marine) organized a JEDI focus group at the Sixth International Marine Conservation Congress (IMCC6) which was held virtually. The focus group included a portion of the global cohort of IMCC6 attendees who identified issues affecting JEDI in marine conservation and explored pathways to address those issues. Therefore, the barriers and pathways identified here focus on issues pertinent to participants’ global regions and experiences. Several barriers to just, equitable, diverse, and inclusive conservation science and practice were identified. Examples included limited participation of under-represented minorities (URM) in research networks, editorial biases against URM, limited professional development and engagement opportunities for URM and non-English speakers, barriers to inclusion of women, LGBTQ+, and sensory impaired individuals, and financial barriers to inclusion of URM in all aspects of marine conservation and research. In the current policy brief, we explore these barriers, assess how they limit progress in marine conservation research and practice, and seek to identify initiatives for improvements. We expect the initiatives discussed here to advances practices rooted in principles of JEDI, within SCB Marine and, the broader conservation community. The recommendations and perspectives herein broadly apply to conservation science and practice, and are critical to effective and sustainable conservation and management outcomes.
    Description: The Society for Conservation – Marine Section provided partial funding to support publication costs of this manuscript.
    Keywords: Equity ; Diversity ; Inclusion ; Conferences ; Peer-review ; Bias ; Marine ; Conservation
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  • 16
    Publication Date: 2022-10-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Little, S. N., van Hengstum, P. J., Beddows, P. A., Donnelly, J. P., Winkler, T. S., & Albury, N. A. . Unique habitat for benthic foraminifera in subtidal blue holes on carbonate platforms. Frontiers in Ecology and Evolution, 9, (2021): 794728, https://doi.org/10.3389/fevo.2021.794728.
    Description: Dissolution of carbonate platforms, like The Bahamas, throughout Quaternary sea-level oscillations have created mature karst landscapes that can include sinkholes and off-shore blue holes. These karst features are flooded by saline oceanic waters and meteoric-influenced groundwaters, which creates unique groundwater environments and ecosystems. Little is known about the modern benthic meiofauna, like foraminifera, in these environments or how internal hydrographic characteristics of salinity, dissolved oxygen, or pH may influence benthic habitat viability. Here we compare the total benthic foraminiferal distributions in sediment-water interface samples collected from 〈2 m water depth on the carbonate tidal flats, and the two subtidal blue holes Freshwater River Blue Hole and Meredith’s Blue Hole, on the leeward margin of Great Abaco Island, The Bahamas. All samples are dominated by miliolid foraminifera (i.e., Quinqueloculina and Triloculina), yet notable differences emerge in the secondary taxa between these two environments that allows identification of two assemblages: a Carbonate Tidal Flats Assemblage (CTFA) vs. a Blue Hole Assemblage (BHA). The CTFA includes abundant common shallow-water lagoon foraminifera (e.g., Peneroplis, Rosalina, Rotorbis), while the BHA has higher proportions of foraminifera that are known to tolerate stressful environmental conditions of brackish and dysoxic waters elsewhere (e.g., Pseudoeponides, Cribroelphidium, Ammonia). We also observe how the hydrographic differences between subtidal blue holes can promote different benthic habitats for foraminifera, and this is observed through differences in both agglutinated and hyaline fauna. The unique hydrographic conditions in subtidal blue holes make them great laboratories for assessing the response of benthic foraminiferal communities to extreme environmental conditions (e.g., low pH, dysoxia).
    Description: The financial support for this work was provided by grants from the National Science Foundation to PvH (EAR-1833117) and JD (EAR-1702946).
    Keywords: The Bahamas ; Groundwater ; Benthic foraminifera ; Blue holes ; Karst landscapes ; Environmental stress
    Repository Name: Woods Hole Open Access Server
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  • 17
    Publication Date: 2022-10-26
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Loomis, R., Cooley, S. R., Collins, J. R., Engler, S., & Suatoni, L. A code of conduct is imperative for ocean carbon dioxide removal research. Frontiers in Marine Science, 9, (2022): 872800, https://doi.org/10.3389/fmars.2022.872800.
    Description: As the impacts of rising temperatures mount and the global transition to clean energy advances only gradually, scientists and policymakers are looking towards carbon dioxide removal (CDR) methods to prevent the worst impacts of climate change. Attention has increasingly focused on ocean CDR techniques, which enhance or restore marine systems to sequester carbon. Ocean CDR research presents the risk of uncertain impacts to human and environmental welfare, yet there are no domestic regulations aimed at ensuring the safety and efficacy of this research. A code of conduct that establishes principles of responsible research, fairness, and equity is needed in this field. This article presents fifteen key components of an ocean CDR research code of conduct.
    Description: JC acknowledges funding support from Bezos Earth Fund.
    Keywords: Carbon dioxide removal ; Ocean ; Policy ; Research governance ; Geoengineering
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  • 18
    Publication Date: 2022-10-21
    Description: Dataset: GA02 Leg 3 - Dissolved 143Nd/144Nd
    Description: This dataset includes depth profiles of seawater dissolved 143Nd/144Nd from samples collected on RRS James Cook cruise JC-57 in the southwest Atlantic, Punta Arenas (Chile) to Las Palmas (Spain) in March 2011. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/672203
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1260514
    Description: 2022-10-20
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  • 19
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-01
    Description: Dataset: Acer Fecundity Colony Size and Morphometrics
    Description: Fecundity was assessed for Acropora cervicornis corals with known disease susceptibility. This dataset presents morphometric assessments and information on colony sizes of 10 replicate adult colonies from 12 genets held in Mote Marine Lab’s spawning nurseries. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/843028
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1452538
    Description: 2022-12-01
    Keywords: Coral ; Fecundity ; Morphometrics ; Colony size
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  • 20
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-01
    Description: Dataset: Kelp responses to temperature
    Description: Giant kelp (Macrocystis pyrifera) is a globally distributed foundation species with seasonal fluctuations in abundance in response to local nutrient levels, storm intensity, and ocean temperatures. In this study, we examined individual and population level responses of early life history stages (zoospore settlement, survival, and gametogenesis) to increased temperatures to determine the capacity for temperature-tolerant individuals to allow adaptation in a changing climate. We collected fertile M. pyrifera sporophyll blades from three sites along the California coast (Los Angeles, Santa Barbara, Monterey Bay) and induced zoospore release in the lab. Spores settled on microscope slides at three treatment temperatures (16º, 20º, 22º C), matured for 21 days, and were imaged weekly to determine settlement, survival, and maturation success. On average, individuals from all sites showed lower rates of settlement and maturation in response to increasing temperature. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/878555
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1559105
    Keywords: macroalgae ; foundation species ; genetic variation ; global warming
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  • 21
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-02
    Description: Dataset: Bottle Data for EN665 Gulf of Maine
    Description: This dataset is the bottle data for Cruise EN665 on the R/V Endeavor in the Gulf of Maine, conducted April 7-12, 2021. Included are the CTD rosette data along with nutrient and carbonate chemistry analyses (DIC, TA, and d13C-DIC). Data were collected and analyzed by PI Subhas. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884424
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1923998
    Keywords: ocean acidification ; alkalinity cycling
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  • 22
    Publication Date: 2022-12-02
    Description: Dataset: Oyster shell strengthening in response to blue crab predator cues
    Description: These data include measurements of juvenile oyster shell strength from predator cue bioassay experiments conducted at Dauphin Island Sea Lab, Dauphin Island, AL between June and August of 2020. Study description: Homarine and trigonelline are two blue crab urine metabolites that cause mud crabs to seek refuge, but it is unknown whether these molecules influence other species. In the current study, homarine, trigonelline, and blue crab urine of animals fed conspecific and heterospecific diets were tested on juvenile oysters to ascertain if the same molecules known to alter mud crab behavior also affect oyster morphology. Juvenile oysters were exposed to chemicals for roughly 6 weeks and their shell strength (N) was measured and standardized to the size of the animals (mm) as a proxy for understanding this defense. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883945
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1948423, NSF Division of Ocean Sciences (NSF OCE) OCE-1948441
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  • 23
    Publication Date: 2022-12-02
    Description: Dataset: Dose response evaluation of oyster shell strengthening in response to homarine and trigonelline
    Description: These data include measurements of juvenile oyster shell strength from a dose response experiment conducted at Dauphin Island Sea Lab, Dauphin Island, AL in June - August of 2021. Study description: Homarine and trigonelline are two blue crab urine metabolites that cause juvenile oysters to strengthen their shells are a defensive response. We evaluated the dose dependency of this response with a dose-response experiment where homarine and trigonelline concentrations (of each individual chemical and a combination of the two) spanned 5 log half-steps. Juvenile oysters were exposed to chemicals for 8 weeks and their shell strength (N) was measured and standardized to the size of the animals (mm) as a proxy for understanding this defense. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883999
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1948423, NSF Division of Ocean Sciences (NSF OCE) OCE-1948441
    Description: 2024-06-28
    Keywords: chemical ecology ; oyster reef ; predator-prey interactions
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  • 24
    Publication Date: 2022-12-02
    Description: Dataset: Dose response evaluation of oyster shell strengthening to varying blue crab urine concentrations
    Description: These data include measurements of juvenile oyster shell strength from a dose response experiment of varying blue crab urine concentrations conducted at Dauphin Island Sea Lab, Dauphin Island, AL in August - Oct 2022. Study description: Metabolites from blue crab urine are known to cause shell strengthening in juvenile oysters as a defensive response. Previous studies have identified several bioactive molecules in urine that induce this response in oysters, but others have yet to be identified. In the current study, an array of concentrations of blue crab urine was used to treat oyster juveniles in order to assess the dose-dependency of this response. Oysters were exposed to urine treatments for 8 weeks and their shell strength (N) was measured and standardized to the size of the animals (mm) as a proxy for understanding this defense. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884015
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1948423, NSF Division of Ocean Sciences (NSF OCE) OCE-1948441
    Description: 2024-06-28
    Keywords: oyster reef ; chemical ecology ; predator-prey interactions
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  • 25
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-03
    Description: Dataset: Juvenile Urchin Data
    Description: This dataset describes phenotypic plasticity in sand dollars in response to predators at the Friday Harbor Laboratories, WA, USA and in sea urchins from Southern Maine, USA from 2018 to 2019. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/877780
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1850837
    Keywords: echinoderm ; phenotypic plasticity ; predator ; larvae ; juvenile
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  • 26
    Publication Date: 2022-11-13
    Description: Dataset: Gene expression of Eurytemora affinis (saline and freshwater)
    Description: To explore mechanisms of freshwater adaptation and distinguish between adaptive (evolutionary) and acclimatory (plastic) responses to salinity change, we examined genome‐wide patterns of gene expression between ancestral saline and derived freshwater populations of the Eurytemora affinis species complex, reared under two different common‐garden conditions (0 vs. 15 PSU). These data include the RNA-seq Illumina short paired end reads (101 base pairs) of 10 freshwater and 12 saline copepods Eurytemora affinis samples. The freshwater copepod samples were collected in Lake Michigan (Racine Harbor), while the saline copepods were collected in Baie de L'Isle Verte, St. Lawrence marsh, Quebec, Canada. These data have important implications for our understanding of the evolutionary and physiological mechanisms of range expansions by some of the most widespread invaders in aquatic habitats. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883426
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1658517
    Keywords: gene expression ; Invasive species ; osmoregulation ; evolutionary adaptation ; acclimation
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  • 27
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-14
    Description: Dataset: Microsensor Profiling O2
    Description: These data were collected as part of a sediment incubation experiment, to investigate potential interactions between estuarine cable bacteria and their associated microbial community. Sediments were collected from the main channel of Chesapeake Bay at a mesohaline station that experiences seasonal oxygen depletion. The upper 10 centimeters (cm) of sediment was homogenized under anaerobic conditions, packed into polycarbonate core liners, and incubated in a dark climate-controlled room in aerated aquaria with artificial seawater (S=15.5; T=16 degrees Celsius). In a sub-set of core tubes, a 0.2 micron polycarbonate filter was held embedded at 0.5 cm depth, to block the downward growth of cable bacteria while allowing for porewater diffusion. The sediments (with and without embedded filters) were destructively sampled on 6 dates over 46 days, at which time nucleic acids, samples for microscopy, and samples for porewater geochemistry were collected. Microsensor profiling (oxygen (O2), pH, hydrogen sulfide (H2S)) was conducted alongside the destructive sampling. Associated nucleic acid data are available through NCBI Sequence Read Archive, under Bioproject PRJNA833464. Sediment porewaters were handled anaerobically, and were extracted by centrifugation followed by filtration (0.2 micron in-line filters). Geochemical data include porewater anions (sulfate and chloride) measured by ion chromatography, and ammonium and ferrous iron concentrations measured by standard colorimetric methods. Microscopy data include both counts of cable bacteria measured with FISH oligoprobe DSB706, and total single cell bacteria. The dataset was generated by Pinky Liau under the supervision of Dr. Sairah Malkin, Horn Point Laboratory, U. Maryland Center for Environmental Sciences. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883412
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756877, NSF Division of Ocean Sciences (NSF OCE) OCE-1756851
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  • 28
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-14
    Description: Dataset: Microsensor Profiling pH
    Description: These data were collected as part of a sediment incubation experiment, to investigate potential interactions between estuarine cable bacteria and their associated microbial community. Sediments were collected from the main channel of Chesapeake Bay at a mesohaline station that experiences seasonal oxygen depletion. The upper 10 centimeters (cm) of sediment was homogenized under anaerobic conditions, packed into polycarbonate core liners, and incubated in a dark climate-controlled room in aerated aquaria with artificial seawater (S=15.5; T=16 degrees Celsius). In a sub-set of core tubes, a 0.2 micron polycarbonate filter was held embedded at 0.5 cm depth, to block the downward growth of cable bacteria while allowing for porewater diffusion. The sediments (with and without embedded filters) were destructively sampled on 6 dates over 46 days, at which time nucleic acids, samples for microscopy, and samples for porewater geochemistry were collected. Microsensor profiling (oxygen (O2), pH, hydrogen sulfide (H2S)) was conducted alongside the destructive sampling. Associated nucleic acid data are available through NCBI Sequence Read Archive, under Bioproject PRJNA833464. Sediment porewaters were handled anaerobically, and were extracted by centrifugation followed by filtration (0.2 micron in-line filters). Geochemical data include porewater anions (sulfate and chloride) measured by ion chromatography, and ammonium and ferrous iron concentrations measured by standard colorimetric methods. Microscopy data include both counts of cable bacteria measured with FISH oligoprobe DSB706, and total single cell bacteria. The dataset was generated by Pinky Liau under the supervision of Dr. Sairah Malkin, Horn Point Laboratory, U. Maryland Center for Environmental Sciences. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883488
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756877, NSF Division of Ocean Sciences (NSF OCE) OCE-1756851
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  • 29
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-14
    Description: Dataset: Microsensor Profiling H2S
    Description: These data were collected as part of a sediment incubation experiment, to investigate potential interactions between estuarine cable bacteria and their associated microbial community. Sediments were collected from the main channel of Chesapeake Bay at a mesohaline station that experiences seasonal oxygen depletion. The upper 10 centimeters (cm) of sediment was homogenized under anaerobic conditions, packed into polycarbonate core liners, and incubated in a dark climate-controlled room in aerated aquaria with artificial seawater (S=15.5; T=16 degrees Celsius). In a sub-set of core tubes, a 0.2 micron polycarbonate filter was held embedded at 0.5 cm depth, to block the downward growth of cable bacteria while allowing for porewater diffusion. The sediments (with and without embedded filters) were destructively sampled on 6 dates over 46 days, at which time nucleic acids, samples for microscopy, and samples for porewater geochemistry were collected. Microsensor profiling (oxygen (O2), pH, hydrogen sulfide (H2S)) was conducted alongside the destructive sampling. Associated nucleic acid data are available through NCBI Sequence Read Archive, under Bioproject PRJNA833464. Sediment porewaters were handled anaerobically, and were extracted by centrifugation followed by filtration (0.2 micron in-line filters). Geochemical data include porewater anions (sulfate and chloride) measured by ion chromatography, and ammonium and ferrous iron concentrations measured by standard colorimetric methods. Microscopy data include both counts of cable bacteria measured with FISH oligoprobe DSB706, and total single cell bacteria. The dataset was generated by Pinky Liau under the supervision of Dr. Sairah Malkin, Horn Point Laboratory, U. Maryland Center for Environmental Sciences. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883506
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756877, NSF Division of Ocean Sciences (NSF OCE) OCE-1756851
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  • 30
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-14
    Description: Dataset: Pooled sequencing data from field-collected Eurytemora affinis
    Description: This dataset consists of pooled whole-genome sequencing data (Pool-seq) of Eurytemora affinis complex copepods collected from nine locations across North America. Each sample consists of 100 pooled individuals with an approximate 1:1 sex ratio, sequenced using the Nextera DNA library preparation kit and Illumina HiSeq platform. Population sampling targeted nine wild populations of the E. affinis complex from two genetically distinct lineages (the Gulf and Atlantic clades) including both native saline and invaded freshwater locations. The data were generated to investigate evolutionary genomic factors underlying successful invasion of freshwater habitats and were collected by Drs. Martin Bontrager, David B. Stern, and Carol E. Lee of the University of Wisconsin-Madison. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883227
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1658517
    Keywords: genomics ; salinity adaptation ; Marine invasion ; selection
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  • 31
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-14
    Description: Dataset: Geochemistry and Microscopy from Incubation Experiments
    Description: These data were collected as part of a sediment incubation experiment, to investigate potential interactions between estuarine cable bacteria and their associated microbial community. Sediments were collected from the main channel of Chesapeake Bay at a mesohaline station that experiences seasonal oxygen depletion. The upper 10 centimeters (cm) of sediment was homogenized under anaerobic conditions, packed into polycarbonate core liners, and incubated in a dark climate-controlled room in aerated aquaria with artificial seawater (S=15.5; T=16 degrees Celsius). In a sub-set of core tubes, a 0.2 micron polycarbonate filter was held embedded at 0.5 cm depth, to block the downward growth of cable bacteria while allowing for porewater diffusion. The sediments (with and without embedded filters) were destructively sampled on 6 dates over 46 days, at which time nucleic acids, samples for microscopy, and samples for porewater geochemistry were collected. Microsensor profiling (oxygen (O2), pH, hydrogen sulfide (H2S)) was conducted alongside the destructive sampling. Associated nucleic acid data are available through NCBI Sequence Read Archive, under Bioproject PRJNA833464. Sediment porewaters were handled anaerobically, and were extracted by centrifugation followed by filtration (0.2 micron in-line filters). Geochemical data include porewater anions (sulfate and chloride) measured by ion chromatography, and ammonium and ferrous iron concentrations measured by standard colorimetric methods. Microscopy data include both counts of cable bacteria measured with FISH oligoprobe DSB706, and total single cell bacteria. The dataset was generated by Pinky Liau under the supervision of Dr. Sairah Malkin, Horn Point Laboratory, U. Maryland Center for Environmental Sciences. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883171
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756877, NSF Division of Ocean Sciences (NSF OCE) OCE-1756851
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  • 32
    Publication Date: 2022-11-10
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Semper, S., Glessmer, M., Våge, K., & Pickart, R. How warm Gulf Stream water sustains a cold underwater waterfall. Frontiers for Young Minds, 10, (2022): 765740, https://doi.org/10.3389/frym.2022.765740.
    Description: The most famous ocean current, the Gulf Stream, is part of a large system of currents that brings warm water from Florida to Europe. It is a main reason for northwestern Europe’s mild climate. What happens to the warm water that flows northward, since it cannot just pile up? It turns out that the characteristics of the water change: in winter, the ocean warms the cold air above it, and the water becomes colder. Cold seawater, which is heavier than warm seawater, sinks down to greater depths. But what happens to the cold water that disappears from the surface? While on a research ship, we discovered a new ocean current that solves this riddle. The current brings the cold water to an underwater mountain ridge. The water spills over the ridge as an underwater waterfall before it continues its journey, deep in the ocean, back toward the equator.
    Description: Support for this work was provided by the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No. 101022251 (SS), the Trond Mohn Foundation Grant BFS2016REK01 (SS and KV), and the U.S. National Science Foundation Grants OCE-1558742 and OCE-1259618 (RP).
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  • 33
    Publication Date: 2022-11-10
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in van Beek, P., François, R., Honda, M., Charette, M., Reyss, J.-L., Ganeshram, R., Monnin, C., & Honjo, S. Fractionation of 226Ra and Ba in the upper North Pacific Ocean. Frontiers in Marine Science, 9, (2022): 859117, https://doi.org/10.3389/fmars.2022.859117.
    Description: Investigations conducted during the GEOSECS program concluded that radium-226 (T1/2 = 1602 y) and barium are tightly correlated in waters above 2500 m in the Atlantic, Pacific and Antarctic Oceans, with a fairly uniform 226Ra/Ba ratio of 2.3 ± 0.2 dpm µmol-1 (4.6 nmol 226Ra/mol Ba). Here, we report new 226Ra and Ba data obtained at three different stations in the Pacific Ocean: stations K1 and K3 in the North-West Pacific and station old Hale Aloha, off Hawaii Island. The relationship between 226Ra and Ba found at these stations is broadly consistent with that reported during the GEOSECS program. At the three investigated stations, however, we find that the 226Ra/Ba ratios are significantly lower in the upper 500 m of the water column than at greater depths, a pattern that was overlooked during the GEOSECS program, either because of the precision of the measurements or because of the relatively low sampling resolution in the upper 500 m. Although not always apparent in individual GEOSECS profiles, this trend was noted before from the non-zero intercept of the linear regression when plotting the global data set of Ba versus 226Ra seawater concentration and was attributed, at least in part, to the predominance of surface input from rivers for Ba versus bottom input from sediments for 226Ra. Similarly, low 226Ra/Ba ratios in the upper 500 m have been reported in other oceanic basins (e.g. Atlantic Ocean). Parallel to the low 226Ra/Ba ratios in seawater, higher 226Ra/Ba ratios were found in suspended particles collected in the upper 500 m. This suggests that fractionation between the two elements may contribute to the lower 226Ra/Ba ratios found in the upper 500 m, with 226Ra being preferentially removed from surface water, possibly as a result of mass fractionation during celestite formation by acantharians and/or barite precipitation, since both chemical elements have similar ionic radius and the same configuration of valence electrons. This finding has implications for dating of marine carbonates by 226Ra, which requires a constant initial 226Ra/Ba ratio incorporated in the shells and for using 226Ra as an abyssal circulation and mixing tracer.
    Description: This work was supported by a Lavoisier fellowship attributed by the French Ministry of Foreign Affairs to PB in year 2002 and by the Woods Hole Oceanographic Institution (WHOI). This work was completed at the University of Edinburgh in 2003, while PB was a postdoctoral fellow there, with a Marie Curie fellowship from the European Union. The European Union is thus also thanked. MC acknowledges support from the National Science Foundation, Chemical Oceanography program.
    Keywords: Radium ; Barium ; Seawater ; Ratio ; Fractionation ; Dating ; Ocean circulation ; Suspended particles
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  • 34
    Publication Date: 2022-11-10
    Description: Dataset: Exudate Uptake Incubations - Macronutrient Data
    Description: Incubation experiments were conducted in St. John, US Virgin Islands to investigate the composition of exudates released from different species of benthic organisms, and the response of reef seawater microbial communities to mixed exudates released from different species and to specific metabolites. Exudates were collected from the stony coral Porites astreoides, and the octocoral Gorgonia ventalina after an 8 hour incubation. Reef seawater microbial communities were incubated separately in the presence of exudates from P. astreoides and G. ventalina for 48 hours and samples were collected to monitor changes in macronutrient concentrations. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/865193
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736288
    Keywords: coral reef ; Dissolved Organic Macronutrients ; Dissolved Inorganic Macronutrients ; Organic Carbon ; nitrogen ; biogeochemistry
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  • 35
    Publication Date: 2022-11-10
    Description: Dataset: Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry)
    Description: Incubation experiments were conducted in St. John, US Virgin Islands to investigate the composition of exudates released from different species of benthic organisms, and the response of reef seawater microbial communities to mixed exudates released from different species and to specific metabolites. Exudates were collected from the stony coral Porites astreoides, and the octocoral Gorgonia ventalina after an 8 hour incubation. Reef seawater microbial communities were incubated separately in the presence of exudates from P. astreoides and G. ventalina for 48 hours and samples were collected to monitor changes in microbial abundance via flow cytometry and microbial community composition via 16S rRNA gene sequencing. Complementary Targeted and Untargeted metabolomic data from these incubation experiments is available on the MetaboLights database under accession number MTBLS2855. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/865739
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736288
    Keywords: coral reef ; Planktonic Microorganisms ; Prochlorococcus ; Synechococcus ; Cell Counts ; flow cytometry ; Microbial Communities ; 16S rRNA gene sequencing
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  • 36
    Publication Date: 2022-11-10
    Description: Dataset: Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry)
    Description: Pre-filtered reef seawater microbial communities collected from Lameshur Bay, U.S. Virgin Islands were incubated separately in the presence of the individual metabolites riboflavin, pantothenic acid, and caffeine for 24 hours and samples were collected to monitor changes in microbial community composition using 16S rRNA gene sequencing and microbial abundances using flow cytometry. Targeted metabolomic data from these incubations is available on the MetaboLights database under accession number MTBLS3286. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/865159
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736288
    Keywords: coral reef ; Planktonic Microorganisms ; Prochlorococcus ; Synechococcus ; Cell Counts ; flow cytometry ; Microbial Communities ; 16S rRNA gene sequencing
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  • 37
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-15
    Description: Dataset: Heron Reef Carbonate Chemistry
    Description: Seawater samples and environmental measurements were collected across the Heron Island coral reef during three reef-scale surveys in the morning and evening in October of 2015. Seawater samples were analyzed for dissolved inorganic carbon chemistry parameters. The study was designed to characterize the natural spatio-temporal variability of carbonate chemistry and environmental parameters across the entire coral reef system. The spatial surveys were complemented with autonomous sensors making high frequency measurements at three locations. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/839261
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1255042
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  • 38
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-15
    Description: Dataset: ISPP14C Synthesis
    Description: In situ primary productivity based on 14C assimilation and nutrients from samples collected by many research projects and on numerous cruises globally, 1985-2008. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/814803
    Description: National Aeronautics & Space Administration (NASA) NNX14AM15G, Office of Naval Research (ONR) N00014-86-K-0204, NSF Division of Ocean Sciences (NSF OCE) OCE-9312355, NSF Division of Ocean Sciences (NSF OCE) OCE-9311255, NSF Division of Ocean Sciences (NSF OCE) OCE-9311244, NSF Division of Ocean Sciences (NSF OCE) OCE-9311312, Office of Naval Research (ONR) N00014-81-C-0062, NSF Division of Ocean Sciences (NSF OCE) OCE-8817515, NSF Division of Ocean Sciences (NSF OCE) OCE-8121011, NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) OPP-9530611, NSF Division of Ocean Sciences (NSF OCE) OCE-8120773, NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) OPP-9531990, NSF Office of Polar Programs (formerly NSF PLR) (NSF OPP) OPP-9531981, Office of Naval Research (ONR) N00014-89-J-1150, Office of Naval Research (ONR) NO0014-87-K-0160, Office of Naval Research (ONR) NO0014-89-J-1160, Office of Naval Research (ONR) NO0014-94-L-0394, National Aeronautics & Space Administration (NASA) NNX14AQ47A
    Keywords: Productivity ; Ocean ; Dataset ; JGOFS ; Atlantic
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  • 39
    Publication Date: 2022-11-15
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in LeKieffre, C., Jauffrais, T., Bernhard, J., Filipsson, H., Schmidt, C., Roberge, H., Maire, O., Panieri, G., Geslin, E., & Meibom, A. Ammonium and sulfate assimilation is widespread in benthic foraminifera. Frontiers in Marine Science, 9, (2022): 861945, https://doi.org/10.3389/fmars.2022.861945.
    Description: Nitrogen and sulfur are key elements in the biogeochemical cycles of marine ecosystems to which benthic foraminifera contribute significantly. Yet, cell-specific assimilation of ammonium, nitrate and sulfate by these protists is poorly characterized and understood across their wide range of species-specific trophic strategies. For example, detailed knowledge about ammonium and sulfate assimilation pathways is lacking and although some benthic foraminifera are known to maintain intracellular pools of nitrate and/or to denitrify, the potential use of nitrate-derived nitrogen for anabolic processes has not been systematically studied. In the present study, NanoSIMS isotopic imaging correlated with transmission electron microscopy was used to trace the incorporation of isotopically labeled inorganic nitrogen (ammonium or nitrate) and sulfate into the biomass of twelve benthic foraminiferal species from different marine environments. On timescales of twenty hours, no detectable 15N-enrichments from nitrate assimilation were observed in species known to perform denitrification, indicating that, while denitrifying foraminifera store intra-cellular nitrate, they do not use nitrate-derived nitrogen to build their biomass. Assimilation of both ammonium and sulfate, with corresponding 15N and 34S-enrichments, were observed in all species investigated (with some individual exceptions for sulfate). Assimilation of ammonium and sulfate thus can be considered widespread among benthic foraminifera. These metabolic capacities may help to underpin the ability of benthic foraminifera to colonize highly diverse marine habitats.
    Description: This work was supported by the Swiss National Science Foundation (grant no. 200021_149333), and a postdoctoral fellowship allowed to CL by the University Loire-Bretagne. SBB sampling was funded by US National Science Foundation grant BIO IOS 1557430 to JMB, who also acknowledges NASA grant #80NSSC21K0478 for partial support. HF acknowledges funding from the Swedish Research Council VR (grant number 2017-04190). Svalbard sampling was supported by the Research Council of Norway through CAGE (Center for Excellence in Arctic Gas Hydrate Environment and Climate, project number 223259) and NORCRUST (project number 255150) to GP and the fellowship MOPGA (Make Our Planet Great Again) by CAMPUS France to CS.
    Keywords: Marine protists ; Coastal environments ; Biogeochemical cycles ; NanoSIMS ; Nitrogen ; Sulfur
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  • 40
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-23
    Description: Dataset: Compilation of MULVFS size-fractionated POC, PIC, and bSi data
    Description: This dataset reports 74 profiles of 〈53um and 〉53um concentrations of particulate organic carbon (POC), particulate inorganic carbon (PIC), and biogenic silica (bSi) collected and analyzed by James K.B. Bishop from 17 cruises using ship-powered (Multiple Unit) Large Volume In-situ Filtration (LVFS, later MULVFS) between 1973 and 2005. The dataset was compiled by Phoebe Lam. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884057
    Repository Name: Woods Hole Open Access Server
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-23
    Description: Dataset: Seagrass Braun–Blanquet Surveys
    Description: These data represent seagrass community composition surveys conducted from May to December 2021 around artificial reefs in shallow (less than 4 meters) coastal waters in The Bight of Old Robinson, off of Abaco Island, The Bahamas. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873083
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1948622
    Keywords: seagrass ; community composition ; survey
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-23
    Description: Dataset: Oyster genetic identity and parasite community structure
    Description: Intraspecific variation in host susceptibility to individual parasite species is common, yet how these effects scale to mediate the structure of diverse parasite communities in nature is not as well understood. To address this knowledge gap, we tested how host genetic identity affects parasite communities on restored reefs seeded with juvenile oysters from different sources – a regional commercial hatchery or one of two wild progenitor lines. We assessed the prevalence and intensity of three micro- and two macro-parasite species for four years following restoration. Despite the spatial proximity of restored reefs, oyster source identity strongly predicted parasite community prevalence across all years, with sources varying in their relative susceptibility to different parasites. Oyster seed source also predicted reef-level parasite intensities across space and through time. Our results highlight that host intraspecific variation can shape parasite community structure in natural systems, and reinforce the importance of considering source identity and diversity in restoration design. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883570
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320, U.S. Fish & Wildlife Service Wildlife and Sport Fish Restoration Program (USFWS WSFR) WSFR F20AF00145
    Keywords: Crassostrea virginica ; host-parasite ; habitat restoration ; genetic variation
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-23
    Description: Dataset: Seagrass Braun–Blanquet Surveys
    Description: These data represent seagrass community composition surveys conducted from May to December 2021 around artificial reefs in shallow (less than 4 meters) coastal waters in The Bight of Old Robinson, off of Abaco Island, The Bahamas. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873083
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1948622
    Keywords: seagrass ; community composition ; survey
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-24
    Description: Dataset: Cryptic N: Seasonal STE Profiles
    Description: These data were collected during 2018-2020 from a sandy subterranean estuary (STE) located in Gloucester Point, Virginia, USA. Several campaigns were conducted to collect porewater across seasonal, tidal, and spatial scales. Porewater samples were collected from dedicated piezometers at depths ranging from 10 centimeters to 300 centimeters deep in the STE. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/807664
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1658135, NSF Division of Ocean Sciences (NSF OCE) OCE-1657801
    Keywords: porewater ; sandy subterranean estuary ; profiles
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  • 45
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-11-22
    Description: Dataset: Clownfish Photos
    Description: Clownfish photos taken in association with the clownfish log dataset (https://www.bco-dmo.org/dataset/781917) from the West coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87525), 2015-2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/862334
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1430218
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  • 46
    Publication Date: 2022-11-22
    Description: Dataset: Mesocosm warming experiment temperature
    Description: This dataset includes seawater temperature measurements from mesocosms. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite Labyrinthula zosterae. These data were plotted in Schenck et al (2022) as Figure S1. And Bois et al., 2021 as Figure 1. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883037
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: climate change ; host-parasite ; microbiome ; seagrass ; wasting disease
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  • 47
    Publication Date: 2022-11-22
    Description: Dataset: Mesocosm warming experiment quantitative PCR inhibition controls
    Description: This data set includes quantitative PCR cell count estimates from samples of DNA extracted from seagrass wasting disease parasite, Labyrinthula zosterae, cultures of known cell concentrations run with and without DNA extracted from seagrass, Zostera marina, tissue samples to test for quantitative PCR signal inhibition. Seagrass tissue samples were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite L. zosterae. These data were plotted in Schenck et al (2022) as Figure S6. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883055
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: climate change ; host-parasite ; microbiome ; seagrass ; wasting disease
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  • 48
    Publication Date: 2022-11-22
    Description: Dataset: Fish and Invertebrate Transects
    Description: Fish and invertebrate transect survey dataset from the West coast of Leyte, the Philippines in the municipalities of Albuera (10.91667, 124.69667) and Bay Bay City (11.07611, 124.87525), 2014-2017. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/862405
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1430218
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  • 49
    Publication Date: 2022-11-22
    Description: Dataset: Mesocosm microbial analyses results
    Description: This dataset includes outputs from statistical analyses of differences in microbial taxa (amplicon sequence variant or ASV) abundance among two groups of seagrass, Zostera marina, genotypes: those that showed reduced Labyrinthula zosterae parasites when warmed vs those that showed increased L. zosterae parasites when warmed; and two seawater temperature treatments: ambient or elevated +3.2oC. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite L. zosterae. These data were published in Schenck et al (2022). Related sequence data from this experiment is accessible from the National Center for Biotechnology Information (NCBI) BioProject PRJNA716355. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883070
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: climate change ; host-parasite ; microbiome ; seagrass ; wasting disease
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  • 50
    Publication Date: 2022-11-22
    Description: Dataset: Mesocosm warming experiment seagrass metrics
    Description: This dataset includes seagrass metrics (diversity, biomass, growth, and wasting disease) from mesocosm experiments at Bodega Marine Laboratory in July-September 2015. Data were collected as part of a mesocosm study at the Bodega Marine Laboratory examining the independent and interactive effects of warming, host genotypic identity, and host genotypic diversity on the prevalence and intensity of infections of seagrass by the wasting disease parasite Labyrinthula zosterae. These data were published in Schenck et al (2022). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/879749
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: Zostera marina ; microbiome ; seagrass wasting disease ; host-parasite ; seagrass ; wasting disease
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  • 51
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-07
    Description: Dataset: Genome assembly: Montastrea cavernosa
    Description: Draft de novo genome assembly of M. cavernosa specimen collected from the West Bank of the Flower Garden Banks National Marine Sanctuary (27.88° N, 93.83° W) in 2014. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/875253
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737312
    Keywords: cryptic speciation ; adaptation ; seascape genomics ; depth ; reef
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-07
    Description: Dataset: Sequencing Reads
    Description: Sequencing reads_(2bRAD) for broadcasters Montastrea cavernosa and Siderastrea siderea sampled in the Lower Florida Keys and brooders Agaricia agaricites and Porites astreoides sampled in Florida coral reefs, from Dry Tortugas to Fowley Rocks. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/874274
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737312
    Keywords: Coral ; population genetics ; gene expression ; genotype-environment association
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-08
    Description: Dataset: EN584 LV incubation, peptidase and glucosidase activities
    Description: Measurements of peptidase and glucosidase activities in large volume mesocosm incubations on RV/Endeavor EN584, July 2016 (Patterns of activities project) For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/717532
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1332881
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-08
    Description: Dataset: EN638 LV Plate Rates
    Description: Small substrate hydrolysis of large volume (LV) samples aboard the R/V Endeavor EN638, May 2019 in the Northern Atlantic. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/821694
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736772
    Keywords: carbon cycling ; extracellular enzymes ; heterotrophy ; microbial activity ; biogeochemistry
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  • 55
    Publication Date: 2022-12-06
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Boss, E., Waite, A., Karstensen, J., Trull, T., Muller-Karger, F., Sosik, H., Uitz, J., Acinas, S., Fennel, K., Berman-Frank, I., Thomalla, S., Yamazaki, H., Batten, S., Gregori, G., Richardson, A., & Wanninkhof, R. Recommendations for plankton measurements on OceanSITES moorings with relevance to other observing sites. Frontiers in Marine Science, 9, (2022): 929436, https://doi.org/10.3389/fmars.2022.929436.
    Description: Measuring plankton and associated variables as part of ocean time-series stations has the potential to revolutionize our understanding of ocean biology and ecology and their ties to ocean biogeochemistry. It will open temporal scales (e.g., resolving diel cycles) not typically sampled as a function of depth. In this review we motivate the addition of biological measurements to time-series sites by detailing science questions they could help address, reviewing existing technology that could be deployed, and providing examples of time-series sites already deploying some of those technologies. We consider here the opportunities that exist through global coordination within the OceanSITES network for long-term (climate) time series station in the open ocean. Especially with respect to data management, global solutions are needed as these are critical to maximize the utility of such data. We conclude by providing recommendations for an implementation plan.
    Description: This work was partially supported from funding to SCOR WG 154 (P-OBS) provided by national committees of the Scientific Committee on Oceanic Research (SCOR) and from a grant to SCOR from the U.S. National Science Foundation (OCE-1840868). FM-K acknowledges the support provided for participation by the Marine Biodiversity Observation Network (MBON) sponsored by NASA, NOAA, ONR, BOEM. HS acknowledges support from the Simons Foundation.
    Keywords: Plankton ; Ocean ; Measurements ; Sensors ; OceanSITES ; Ocean biology
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-16
    Description: Dataset: Thorium-234 from SalpPOOP cruise
    Description: This dataset represents Thorium-234 data from samples in the water column at the Chatham Rise (subtropical and subantarctic waters) on the Tangaroa Cruise 1810 (aka SalpPOOP cruise) in October and November 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883989
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756465, NSF Division of Ocean Sciences (NSF OCE) OCE-1756610
    Keywords: thorium-234 ; uranium-thorium disequilibrium ; Carbon Export ; salps ; sinking particles
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-16
    Description: Dataset: Culture Characteristics
    Description: This dataset represents the growth behaviors of diatom (Phaeodactylum tricornutum) monoculture and diatom-bacteria co-cultures in the lab. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/856200
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1948163
    Description: 2023-07-21
    Keywords: volatile organic compounds ; Phaeodactylum tricornutum ; Synechococcus ; algae-bacteria interactions
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  • 58
    Publication Date: 2022-12-22
    Description: Dataset: GP15 Fe Zn Cd Dissolved and Stable Isotope Ratios - Leg 1
    Description: This dataset reports dissolved (0.2µm AcroPak filter) concentrations and stable isotope ratios of iron, zinc, and cadmium (Fe, Zn, and Cd) via Nobias PA-1 extraction and MC-ICPMS analysis in water samples collected by the GTC (GEOTRACES Trace-metal clean CTD carousel) and/or surface tow fish from 23 stations along the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15) on R/V Roger Revelle from September to October 2018. The GP15 cruise sailed from September to November 2018 on a meridional transect along 152°W from Alaska to Tahiti. Concentration and isotope data were collected by Dr. Matthias Sieber and Dr. Tim Conway at the University of South Florida using a Thermo Neptune Plus MC-ICPMS. Trace metal isotope ratios are an important tool to better understand the marine cycles of trace metals and their relationship to major nutrients. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/883862
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737136
    Description: 2023-12-31
    Keywords: trace metals ; isotopes ; GEOTRACES
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  • 59
    Publication Date: 2022-12-22
    Description: Dataset: GP15 Fe Zn Cd Dissolved and Stable Isotope Ratios - Leg 2
    Description: This dataset reports dissolved (0.2µm AcroPak filter) concentrations and stable isotope ratios of iron, zinc, and cadmium (Fe, Zn, and Cd) via Nobias PA-1 extraction and MC-ICPMS analysis in water samples collected by the GTC (GEOTRACES Trace-metal clean CTD carousel) and/or surface tow fish from 23 stations along the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15) on R/V Roger Revelle from October to November 2018. The GP15 cruise sailed from September to November 2018 on a meridional transect along 152°W from Alaska to Tahiti. Concentration and isotope data were collected by Dr. Matthias Sieber and Dr. Tim Conway at the University of South Florida using a Thermo Neptune Plus MC-ICPMS. Trace metal isotope ratios are an important tool to better understand the marine cycles of trace metals and their relationship to major nutrients. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884673
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1737136
    Description: 2023-12-31
    Keywords: trace metals ; isotopes ; GEOTRACES
    Repository Name: Woods Hole Open Access Server
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  • 60
    Publication Date: 2022-12-22
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Subhas, A., Marx, L., Reynolds, S., Flohr, A., Mawji, E., Brown, P., & Cael, B. Microbial ecosystem responses to alkalinity enhancement in the North Atlantic Subtropical Gyre. Frontiers in Climate, 4, (2022): 784997, https://doi.org/10.3389./fclim.2022.784997
    Description: In addition to reducing carbon dioxide (CO2) emissions, actively removing CO2 from the atmosphere is widely considered necessary to keep global warming well below 2°C. Ocean Alkalinity Enhancement (OAE) describes a suite of such CO2 removal processes that all involve enhancing the buffering capacity of seawater. In theory, OAE both stores carbon and offsets ocean acidification. In practice, the response of the marine biogeochemical system to OAE must be demonstrably negligible, or at least manageable, before it can be deployed at scale. We tested the OAE response of two natural seawater mixed layer microbial communities in the North Atlantic Subtropical Gyre, one at the Western gyre boundary, and one in the middle of the gyre. We conducted 4-day microcosm incubation experiments at sea, spiked with three increasing amounts of alkaline sodium salts and a 13C-bicarbonate tracer at constant pCO2. We then measured a suite of dissolved and particulate parameters to constrain the chemical and biological response to these additions. Microbial communities demonstrated occasionally measurable, but mostly negligible, responses to alkalinity enhancement. Neither site showed a significant increase in biologically produced CaCO3, even at extreme alkalinity loadings of +2,000 μmol kg−1. At the gyre boundary, alkalinity enhancement did not significantly impact net primary production rates. In contrast, net primary production in the central gyre decreased by ~30% in response to alkalinity enhancement. The central gyre incubations demonstrated a shift toward smaller particle size classes, suggesting that OAE may impact community composition and/or aggregation/disaggregation processes. In terms of chemical effects, we identify equilibration of seawater pCO2, inorganic CaCO3 precipitation, and immediate effects during mixing of alkaline solutions with seawater, as important considerations for developing experimental OAE methodologies, and for practical OAE deployment. These initial results underscore the importance of performing more studies of OAE in diverse marine environments, and the need to investigate the coupling between OAE, inorganic processes, and microbial community composition.
    Description: AS was supported through WHOI internal and Assistant Scientist Startup funding. LM and SR were supported by the University of Portsmouth Ph.D. scheme and the UK NERC National Capability programme CLASS (Climate Linked Atlantic Sector Science) ECR Fellowship. BC, AF, EM, and PB were supported by the UK NERC National Capability programme CLASS, grant number NE/R015953/1.
    Keywords: Climate—change ; Ocean alkalinity enhancement ; Biogeochemistry ; North Atlantic ; Carbon flux
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 61
    Publication Date: 2022-12-30
    Description: Dataset: GP15 Iodine Redox Speciation Leg 1
    Description: This dataset includes inorganic iodine concentrations from Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814), which took place on R/V Roger Revelle from September to October 2018. Iodate was analyzed on UV-Vis Spectrophotometer while Iodide was analyzed on the Hanging Mercury Drop Electrode with the Cathodic Square Wave Stripping Voltammetry setting. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873183
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756415
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  • 62
    Publication Date: 2022-12-30
    Description: Dataset: GP15 Iodine Redox Speciation Leg 2
    Description: This dataset includes inorganic iodine concentrations from Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES PMT cruise (GP15, RR1815), which was conducted on R/V Roger Revelle from October to November 2018. Iodate was analyzed on UV-Vis Spectrophotometer while Iodide was analyzed on the Hanging Mercury Drop Electrode with the Cathodic Square Wave Stripping Voltammetry setting. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873193
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  • 63
    Publication Date: 2022-12-30
    Description: Dataset: GP15 Iodine Redox Speciation Leg 1
    Description: This dataset includes inert copper and inorganic iodine concentrations from Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814), which took place on R/V Roger Revelle from September to October 2018. Iodate was analyzed on UV-Vis Spectrophotometer while Iodide was analyzed on the Hanging Mercury Drop Electrode with the Cathodic Square Wave Stripping Voltammetry setting. Inert copper was determined by Rintaro Moriyasu using the solvent extraction method published in Moriyasu & Moffett, 2022 (doi: 10.1016/j.marchem.2021.104073). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873183
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756415
    Keywords: copper ; Iodine ; Pacific Ocean ; photochemistry ; beryllium-7
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  • 64
    Publication Date: 2022-12-30
    Description: Dataset: GP15 Iodine Redox Speciation Leg 2
    Description: This dataset includes inert copper and inorganic iodine concentrations from Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES PMT cruise (GP15, RR1815), which was conducted on R/V Roger Revelle from October to November 2018. Iodate was analyzed on UV-Vis Spectrophotometer while Iodide was analyzed on the Hanging Mercury Drop Electrode with the Cathodic Square Wave Stripping Voltammetry setting. Inert copper was determined by Rintaro Moriyasu using the solvent extraction method published in Moriyasu & Moffett, 2022 (doi: 10.1016/j.marchem.2021.104073). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/873193
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756415
    Keywords: copper ; Iodine ; Pacific Ocean ; photochemistry ; beryllium-7
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  • 65
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-12-30
    Description: Dataset: Nitrogen Isotope Ratios in Amino Acid Standards and Samples
    Description: These data include Nitrogen Isotope Ratios (δ15N) in amino acid standards and in four field-collected samples. Certified δ15N values are either EA-IRMS values (Glutamic acid [Glu], USGS) or produced by the persulfate oxidization method (Phenylalanine [Phe], Knapp et al., 2005) or provided by McCarthy Lab (M-std and Cyano). Mixtures of 16 amino acids were also evaluated. The newly-developed method used here will help promote the use of δ15N-AA in important studies of nitrogen cycling and trophic ecology in a wide range of research areas. The Phe isotopic standards are available to the community for inter-lab method comparisons. These data were collected by PhD student Wingman (Charlotte) Lee and Dr. Lin Zhang (PI ) at the Texas A&M University-Corpus Christi. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/884976
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1829947, NSF Division of Ocean Sciences (NSF OCE) OCE-1829834
    Keywords: amino acids ; nitrogen isotopes
    Repository Name: Woods Hole Open Access Server
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  • 66
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-07-06
    Description: Dataset: IRN-BRU MV1405 Transect 5 BioGeoChem
    Description: Biological, physical, and chemical data from surface Transect 5 on MV1405 (IRN-BRU) collected in July 2014 in the California Current System. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/876590
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1524482, NSF Division of Ocean Sciences (NSF OCE) OCE-1259776
    Repository Name: Woods Hole Open Access Server
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  • 67
    Publication Date: 2022-06-27
    Description: Dataset: GP15 d13C-DIC Leg 1
    Description: d13C of Dissolved Inorganic Carbon (DIC) measured on bottle cast samples from Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) on R/V Roger Revelle from September to October 2018 For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/869595
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1829796
    Repository Name: Woods Hole Open Access Server
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  • 68
    Publication Date: 2022-06-27
    Description: Dataset: GP15 FIA Dissolved Al Fe Mn Leg 2
    Description: his dataset reports shipboard Flow Injection Analysis (FIA) of dissolved Aluminum (Al), Iron (Fe), and Manganese (Mn) (0.2µm AcroPak filter) from samples collected by the GTC (GEOTRACES Trace-metal clean CTD carousel) and tow fish during Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) on R/V Roger Revelle from October to November 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/876152
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736906
    Repository Name: Woods Hole Open Access Server
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  • 69
    Publication Date: 2022-06-27
    Description: Dataset: GP15 FIA Dissolved Al Fe Mn Leg 1
    Description: This dataset reports shipboard Flow Injection Analysis (FIA) of dissolved Aluminum (Al), Iron (Fe), and Manganese (Mn) (0.2µm AcroPak filter) from samples collected by the GTC (GEOTRACES Trace-metal clean CTD carousel) and tow fish during Leg 1 (Seattle, WA to Hilo, HI) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1814) on R/V Roger Revelle from September to October 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/876137
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736906
    Repository Name: Woods Hole Open Access Server
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  • 70
    Publication Date: 2022-06-27
    Description: Dataset: GP15 d13C-DIC Leg 2
    Description: d13C of Dissolved Inorganic Carbon (DIC) measured on bottle cast samples from Leg 2 (Hilo, HI to Papeete, French Polynesia) of the US GEOTRACES Pacific Meridional Transect (PMT) cruise (GP15, RR1815) on R/V Roger Revelle from October to November 2018 For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/869611
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1829796
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  • 71
    Publication Date: 2022-06-27
    Description: Dataset: CTD data from Bongo plankton net tows
    Description: Up-casts temperature, salinity and density data from CTD mounted above Bongo net frame sampled aboard RV Bob and Betty Beyster and RV Shearwater cruises in the Southern California Bight from fall 2020 to spring 2021. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/871003
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-2053719
    Repository Name: Woods Hole Open Access Server
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  • 72
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-09-13
    Description: Dataset: Coastal Maine CTD Data
    Description: This dataset includes vessel CTD profiles from the outer reaches of the Damariscotta River Estuary in the mid-coast region of Maine collected from June 2017 to July 2018. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/809309
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1435021
    Keywords: Estuary ; CTD profiles ; Damariscotta River
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  • 73
    Publication Date: 2022-08-30
    Description: Dataset: OFP Elemental
    Description: This dataset includes mass flux and concentrations of bulk components (Carbonate, Organic Carbon/Nitrogen, Lithogenics, Opal) and elements in the flux at 500m, 1500m, and 3200m depths from the Ocean Flux Program (OFP) sediment trap time-series in the northern Sargasso Sea. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/784396
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1536644
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  • 74
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Martha’s Vineyard Sound Iodine Isotope Tracer Experiments
    Description: This dataset includes iodine speciation and isotope measurements from iodine tracer experiments. Water samples were collected from a depth of 5 meters at the Woods Hole Oceanographic Institution's Environmental Systems Laboratory on Martha's Vineyard Sound, Massachusetts, USA. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/865249
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1829406
    Keywords: Iodine speciation ; Iodine tracer
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  • 75
    Publication Date: 2022-10-31
    Description: Dataset: Global Noble Gases
    Description: Inert gases dissolved in the ocean are powerful tracers of the impact of physical processes on gases, particularly air-sea gas exchange (by both diffusive and bubble-meditated processes), temperature change, atmospheric pressure variation, mixing between different water masses, and ice processes. We have compiled a global ocean database of dissolved neon, argon, and krypton measurements, supplemented by helium, xenon, and nitrogen/argon (N2/Ar) ratios in some locations. Samples were collected on board multiple research cruises spanning the period 1999 through 2016 and analyzed by mass spectrometry at four different shore-based laboratories (University of Victoria, Woods Hole Oceanographic Institution, University of Washington, and Scripps Institution of Oceanography). Version 2.0 corrects an incorrect sign in the longitude for cruise 33KI20040814:HOT162 in version 1.0. The error in the database does not affect any figures in the publication (doi: 10.1146/annurev-marine-121916-063604). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/743867
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-0623034, NSF Division of Ocean Sciences (NSF OCE) OCE-0926659, National Sciences and Engineering Research Council of Canada (NSERC) 328290-2006, NSF Division of Ocean Sciences (NSF OCE) OCE-1130870, NSF Division of Ocean Sciences (NSF OCE) OCE-1232991, NSF Division of Ocean Sciences (NSF OCE) OCE-1029299, National Sciences and Engineering Research Council of Canada (NSERC) 329290-2012, National Sciences and Engineering Research Council of Canada (NSERC) 433848-2012, National Sciences and Engineering Research Council of Canada (NSERC) 433898-2012, NSF Division of Ocean Sciences (NSF OCE) OCE-9617487, NSF Division of Ocean Sciences (NSF OCE) OCE-9819181, NSF Division of Ocean Sciences (NSF OCE) OCE-9906922, NSF Division of Ocean Sciences (NSF OCE) OCE-0221247, NSF Division of Ocean Sciences (NSF OCE) OCE-0242139, NSF Division of Ocean Sciences (NSF OCE) OCE-0647979, NSF Division of Ocean Sciences (NSF OCE) OCE-0825394
    Keywords: Noble gases ; Nitrogen ; Neon ; Argon ; Krypton ; Carbon pumps
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  • 76
    Publication Date: 2022-10-31
    Description: Dataset: Wasting Disease and Seagrass Field Experiment
    Description: This dataset includes wasting disease infection prevalence and severity in four Zostera marina subpopulations located along a 30 kilometer stretch of coastline on the North shore of Massachusetts. Surveys of subpopulations were conducted in July and September 2016. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/851122
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1652320
    Keywords: Labyrinthula zosterae ; Parasite ; Seagrass ; Wasting disease ; Zostera marina
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  • 77
    Publication Date: 2022-10-31
    Description: Dataset: Symbiodiniaceae communities in corals with ITS-2 rDNA amplicon sequencing
    Description: Symbiodiniaceae communities were investigated at three locations on the Great Barrier Reef in October 2014. Acropora millepora samples from Davies Reef lagoon (18°30′3.96′′S, 147°22′48′′E), Rib Reef (18°28′53.4′′S, 146°52′24.96′′E), and Pandora Island (18°48′45′′S, 146°25′59.16′′E), were exposed to various stressors including pCO2, heat, bacteria, all of these, or none of these (control). This dataset lists accessions and collection information for ITS-2 rDNA amplicon data that are available at the National Center for Biotechnology Information (NCBI) under BioProject PRJNA596498. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/844431
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1635798
    Keywords: Acropora millepora ; Alpha diversity ; Beta diversity ; Climate change ; Coral ; Symbiodiniaceae
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  • 78
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Effects of mussels on seawater chemistry
    Description: This dataset represents average conditions and chemical fluxes during mussel bed experiments where chemistry (pH and O2) was measured at defined heights within and above the mussel bed. These data describe average conditions outside of the mussel bed during each profile sampled at the Bodega Marine Laboratory, University of California, Davis in 2017. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/869361
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1636191
    Keywords: Mytilus californicus ; Mussel bed ; Biogenic habitat ; Foundation species ; Carbonate chemistry ; Chemical gradients ; Calcification ; Respiration ; Flow speed ; PH ; Oxygen
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  • 79
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Coral reefs in the US Virgin Islands
    Description: These data describe the results of surveys of coral reefs at 10 m depth at 12 sites around St. Thomas and St. John, US Virgin Islands from 2011-2021 (up to 4 surveys). These results will be published in Edmunds & Smith (2022). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/872285
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-2019992
    Description: 2022-04-30
    Keywords: Coral reef ; Ecology ; Time series ; US Virgin Islands
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  • 80
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Legacy of predators: behavior
    Description: To investigate anti-predatory and foraging behaviors of whelks, we conducted laboratory experiments at Bodega Marine Laboratory in 2017 to test whether previous predator exposure had a sustained effect on prey foraging and in turn on a basal resource, even after the predator was removed. We tested for both behavioral and morphological legacies of prior predation. The study system consisted of a tri-trophic food chain, using the red rock crab, Cancer productus, as the predator, the carnivorous whelk, Nucella ostrina, as the prey species, and the California mussel, Mytilus californianus, as the basal resource. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/869563
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1636191
    Keywords: Fear persistence ; Legacy of fear ; Anti-predator responses ; Intertidal species interactions
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  • 81
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Mesocosm study: sea star behavior
    Description: This dataset represents a mesocosm study of trophic interactions under ocean acidification, focusing on sea star behavior in Bodega Bay, California. This study is part of a larger experiment to investigate how pH influences trophic links between intertidal sea stars (Leptasterias hexactis), snails (Tegula funebralis), and macroalgae (Mazzaella flaccida). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/866365
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1636191
    Keywords: Carbon dioxide ; Tidepool ; Predator-prey interaction ; Benthic invertebrates ; Behavior ; Non-consumptive effects
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  • 82
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Abalone respiration rates from the Sitka Sound (SSSC)
    Description: This data shows juvenile, non-reproductive Abalone respiration responses (represented by measured dissolved oxygen) to a fully factorial mesocosm experiment that manipulates pH and diet. This data was collected from June to October 2017 at the Sitka Sound Science Center (SSSC). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/856199
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1752600
    Keywords: Feeding ; Energetics ; Abalone ; Ocean acidification ; Diet ; Respirometry
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  • 83
    Publication Date: 2022-10-31
    Description: Dataset: Intra-annual salinity and temperature variation in four regions across latitude
    Description: Temperature and salinity measurements from coastal sites across a latitudinal gradient spanning the subarctic to the tropics. Environmental variables were obtained at 1 meter below the water surface and are represented in biweekly periods for one year. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/863108
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1434528
    Keywords: Salinity ; Seawater temperature ; Nearshore ; Marinas
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  • 84
    Publication Date: 2022-10-31
    Description: Dataset: Richness of marine invertebrate communities across latitude with exposure to predation
    Description: Richness of sessile marine invertebrates from coastal sites across a latitudinal gradient spanning the subarctic to the tropics. Invertebrate communities developed under low predation for three or 12 months within cages and then underwent exposure to predation or were re-caged as controls. This experiment provided an assessment of predation impact on mature communities to complement predator exclusion experiments that measured impact of predators on prey community assembly. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/862052
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1434528
    Keywords: Marine invertebrate ; Predation ; Latitude ; Marine invasion ; Fish
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 85
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Coral Growth
    Description: This dataset represents Antillogorgia elisabethae branch extension measurements for colonies clipped to 10 or 4 branches or not clipped. Data were collected as part of a project on recruitment among density-manipulated populations of Caribbean gorgonians sampled from San Salvador and Abaco, The Bahamas from June 1999 and June 2000. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/872600
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756381, NSF Division of Ocean Sciences (NSF OCE) OCE-0327129
    Keywords: Antillogorgia ; Gorgonian ; Harvest ; Astogeny ; Coral reef ; Modular organism ; Partial mortality
    Repository Name: Woods Hole Open Access Server
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  • 86
    Publication Date: 2022-10-31
    Description: Dataset: Primary producer amino acid nitrogen isotope data meta-analysis
    Description: This dataset is a meta-analysis of primary producer amino acid δ15N data presented in Ramirez et al. (2021). A literature review provided primary producer amino acid isotope data with ecologically relevant information to examine beta variability in trophic position estimates. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/870320
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-2049307
    Keywords: Compound specific isotope analysis ; Amino Acid ; Food web ; Trophic ecology
    Repository Name: Woods Hole Open Access Server
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  • 87
    Publication Date: 2022-10-31
    Description: Dataset: Biomass of experimental marine invertebrate communities across latitude
    Description: Biomass of sessile marine invertebrates from coastal sites across a latitudinal gradient spanning the subarctic to the tropics. Biomass of each community was measured after a developmental period of three or 12 months under nine different treatments that tested the effect of predation and competition. Caging was used to reduce predation pressure and biomass removals opened up space, a limiting resource in sessile communities. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/861655
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1434528
    Keywords: Marine invertebrate ; Predation ; Competition ; Latitude ; Marine invasion
    Repository Name: Woods Hole Open Access Server
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  • 88
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    Unknown
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Sea urchin density Galápagos Islands
    Description: Sea urchin (E. galapagensis) densities showed high variability across twelve study sites in the Galápagos Islands in 2016-2017. Sea urchin densities ranged from a low of 0.17 individuals per 0.25 square meter quadrat at the Pinzon site to a maximum of 7.7 individuals per quadrat at the Champion site in January 2016. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/872905
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1623867
    Keywords: Sea Urchin ; Rocky subtidal ; Community structure
    Repository Name: Woods Hole Open Access Server
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  • 89
    Publication Date: 2022-10-31
    Description: Dataset: Predation intensity on marine invertebrate communities across latitude observed using underwater video
    Description: Predation intensity recorded from exposed prey communities at coastal sites across a latitudinal gradient spanning the subarctic to the tropics. Invertebrate communities developed under low predation for three or 12 months within cages. Mature prey communities were then exposed to ambient predation, with a high definition camera recording all predation events during the diurnal period over three days of exposure. This experiment provided an assessment of predation intensity (and predator identity) to complement predator exclusion experiments that measured impact of predators on prey community assembly. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/863158
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1434528
    Keywords: Marine invertebrate ; Predation ; Latitude ; Fish ; Nearshore
    Repository Name: Woods Hole Open Access Server
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  • 90
    Publication Date: 2022-10-31
    Description: Dataset: Recruitment composition of sessile marine invertebrate communities across latitude
    Description: Composition of newly recruited communities of sessile marine invertebrates from coastal sites across a latitudinal gradient spanning the subarctic to the tropics. Caging treatments were employed to test the effect of predation on recruitment. Monitoring began in Alaska in June 2015, California in May 2016, Mexico in June 2017 and Panama in December 2015. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/863126
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1434528
    Keywords: Marine invertebrate ; Predation ; Latitude ; Recruitment ; Nearshore
    Repository Name: Woods Hole Open Access Server
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  • 91
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    Unknown
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Coral Branching per Source
    Description: This dataset represents Antillogorgia elisabethae colony growth measurements for colonies clipped to 10 or 4 branches or not clipped in June 1999 and monitored in June 2000 at two sites in The Bahamas. This dataset includes branching data including per capita branching ratio, number of new branches, and number of new branches per mother branch. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/872486
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756381, NSF Division of Ocean Sciences (NSF OCE) OCE-0327129
    Keywords: Antillogorgia ; Gorgonian ; Harvest ; Astogeny ; Coral reef ; Modular organism ; Partial mortality
    Repository Name: Woods Hole Open Access Server
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  • 92
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    Unknown
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Chlorophyll-a: EN532 and EN538
    Description: Chlorophyll-a concentrations from CTD cast deployments and underway seawater inflow from Endeavor 532 and Endeavor 538 cruises in 2013 (August and September) and 2014 (April and May). For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/651784
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1136345
    Keywords: Chlorophyll a ; CTD
    Repository Name: Woods Hole Open Access Server
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  • 93
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    Unknown
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Experimental coral treatments
    Description: Coral samples from reefs in Mo'orea, French Polynesia were exposed to various experimental treatments to quantify how different environmental stressors impact the coral health and microbial community structure of the corals. Environmental stressors included increased temperature and nutrients as well as exudate released from corals when they bleach. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/843188
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1635798, NSF Division of Ocean Sciences (NSF OCE) OCE-1635913
    Keywords: Coral reef ; Holobiont ; Coral microbiome ; Climate change
    Repository Name: Woods Hole Open Access Server
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  • 94
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    Unknown
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Tide Pool Community Surveys: Sessile organisms
    Description: This dataset includes information on sessile species found in tide pools on a rocky shoreline during community surveys conducted at John Brown’s Beach, Sitka, Alaska, USA from 2018 to 2020. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/872885
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756173, NSF Division of Ocean Sciences (NSF OCE) OCE-1756208, NSF Division of Ocean Sciences (NSF OCE) OCE-1756216, NSF Division of Ocean Sciences (NSF OCE) OCE-1904185
    Keywords: Alaska ; Sitka ; Rocky intertidal ; Seasonality ; Survey ; Tidepool
    Repository Name: Woods Hole Open Access Server
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  • 95
    Publication Date: 2022-10-31
    Description: Dataset: GT10-11 - Neodymium - USC
    Description: Seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT), 2010 and 2011 on cruises KN199-04 and KN204-01, analyzed by USC. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/3832
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-0927241, NSF Division of Ocean Sciences (NSF OCE) OCE-0928409, NSF Division of Ocean Sciences (NSF OCE) OCE-0926981
    Keywords: GEOTRACES ; Atlantic zonal transect ; Neodymium isotopes
    Repository Name: Woods Hole Open Access Server
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  • 96
    Publication Date: 2022-10-31
    Description: Dataset: GT10-11 - Neodymium - LDEO
    Description: Seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT), 2010 and 2011 on cruises KN199-04 and KN204-01, analyzed at LDEO. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/780582
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-0927241, NSF Division of Ocean Sciences (NSF OCE) OCE-0928409, NSF Division of Ocean Sciences (NSF OCE) OCE-0926981
    Keywords: GEOTRACES ; Atlantic zonal transect ; Neodymium isotopes
    Repository Name: Woods Hole Open Access Server
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  • 97
    Publication Date: 2022-10-31
    Description: Dataset: GT10-11 - Neodymium - UH
    Description: Seawater Nd isotopes and concentrations from the US-GEOTRACES North Atlantic zonal transect (NAZT), 2010 and 2011 on cruises KN199-04 and KN204-01, analyzed by U Hawaii. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/780664
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-0927241, NSF Division of Ocean Sciences (NSF OCE) OCE-0928409, NSF Division of Ocean Sciences (NSF OCE) OCE-0926981
    Keywords: GEOTRACES ; Atlantic zonal transect ; Neodymium isotopes
    Repository Name: Woods Hole Open Access Server
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  • 98
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    Unknown
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Gross oxygen production
    Description: Gross oxygen production and total daytime oxygen consumption derived from in vitro incubations deployed in situ at different depths at Station ALOHA during June 2019 (cruise ID KM1910) For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/868714
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1911990
    Keywords: Primary production ; Gross oxygen production ; Respiration ; Station ALOHA ; North Pacific Subtropical Gyre
    Repository Name: Woods Hole Open Access Server
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  • 99
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    Unknown
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Tide Pool Community Surveys: Mobile organisms
    Description: This dataset includes information on mobile organisms found in tide pools during community surveys conducted at John Brown’s Beach, Sitka, Alaska, USA from 2018 to 2020. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/872957
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1756173, NSF Division of Ocean Sciences (NSF OCE) OCE-1756208, NSF Division of Ocean Sciences (NSF OCE) OCE-1756216, NSF Division of Ocean Sciences (NSF OCE) OCE-1904185
    Keywords: Alaska ; Sitka ; Rocky intertidal ; Seasonality ; Survey ; Tidepool
    Repository Name: Woods Hole Open Access Server
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  • 100
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    Unknown
    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-10-31
    Description: Dataset: Mixed layer oxygen to argon
    Description: Oxygen to argon molar ratios measured in surface waters of Station ALOHA between June 16 and June 23, 2019 onboard R/V Kilo Moana cruise KM1910. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/868774
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1911990
    Keywords: O2/Ar ; Oxygen ; Argon ; Oxygen to argon ratio ; Station ALOHA ; North Pacific Subtropical Gyre
    Repository Name: Woods Hole Open Access Server
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