ALBERT

Beschreibung: Connections between vegetation and soil thermal dynamics are critical for estimating the vulnerability of permafrost to thaw with continued climate warming and vegetation changes. The interplay of complex biophysical processes results in a highly heterogeneous soil temperature distribution on small spatial scales. Moreover, the link between topsoil temperature and active layer thickness remains poorly constrained. Sixty-eight temperature loggers were installed at 1–3 cm depth to record the distribution of topsoil temperatures at the Trail Valley Creek study site in the northwestern Canadian Arctic. The measurements were distributed across six different vegetation types characteristic for this landscape. Two years of topsoil temperature data were analysed statistically to identify temporal and spatial characteristics and their relationship to vegetation, snow cover, and active layer thickness. The mean annual topsoil temperature varied between −3.7 and 0.1 ∘C within 0.5 km2. The observed variation can, to a large degree, be explained by variation in snow cover. Differences in snow depth are strongly related with vegetation type and show complex associations with late-summer thaw depth. While cold winter soil temperature is associated with deep active layers in the following summer for lichen and dwarf shrub tundra, we observed the opposite beneath tall shrubs and tussocks. In contrast to winter observations, summer topsoil temperature is similar below all vegetation types with an average summer topsoil temperature difference of less than 1 ∘C. Moreover, there is no significant relationship between summer soil temperature or cumulative positive degree days and active layer thickness. Altogether, our results demonstrate the high spatial variability of topsoil temperature and active layer thickness even within specific vegetation types. Given that vegetation type defines the direction of the relationship between topsoil temperature and active layer thickness in winter and summer, estimates of permafrost vulnerability based on remote sensing or model results will need to incorporate complex local feedback mechanisms of vegetation change and permafrost thaw.

Beschreibung: In this paper, we quantify the CO2 and N2O emissions from denitrification over the Amazonian wetlands. The study concerns the entire Amazonian wetland ecosystem with a specific focus on three floodplain (FP) locations: the Branco FP, the Madeira FP and the FP alongside the Amazon River. We adapted a simple denitrification model to the case of tropical wetlands and forced it by open water surface extent products from the Soil Moisture and Ocean Salinity (SMOS) satellite. A priori model parameters were provided by in situ observations and gauging stations from the HYBAM Observatory. Our results show that the denitrification and the trace gas emissions present a strong cyclic pattern linked to the inundation processes that can be divided into three distinct phases: activation, stabilization and deactivation. We quantify the average yearly denitrification and associated emissions of CO2 and N2O over the entire watershed at 17.8 kgN ha−1 yr−1, 0.37 gC-CO2 m−2 yr−1 and 0.18 gN-N2O m−2 yr−1 respectively for the period 2011–2015. When compared to local observations, it was found that the CO2 emissions accounted for 0.01 % of the integrated ecosystem, which emphasizes the fact that minor changes to the land cover may induce strong impacts on the Amazonian carbon budget. Our results are consistent with the state of the art of global nitrogen models with a positive bias of 28 %. When compared to other wetlands in different pedoclimatic environments we found that the Amazonian wetlands have similar emissions of N2O with the Congo tropical wetlands and lower emissions than the temperate and tropical anthropogenic wetlands of the Garonne (France), the Rhine (Europe) and south-eastern Asia rice paddies. In summary our paper shows that a data-model-based approach can be successfully applied to quantify N2O and CO2 fluxes associated with denitrification over the Amazon basin. In the future, the use of higher-resolution remote sensing products from sensor fusion or new sensors like the Surface Water and Ocean Topography (SWOT) mission will permit the transposition of the approach to other large-scale watersheds in tropical environments.

Beschreibung: Anaerobic nitrate-dependent Fe(II) oxidation (NDFeO) is widespread in various aquatic environments and plays a major role in iron and nitrogen redox dynamics. However, evidence for truly enzymatic, autotrophic NDFeO remains limited, with alternative explanations involving the coupling of heterotrophic denitrification with the abiotic oxidation of structurally bound or aqueous Fe(II) by reactive intermediate nitrogen (N) species (chemodenitrification). The extent to which chemodenitrification is caused (or enhanced) by ex vivo surface catalytic effects has not been directly tested to date. To determine whether the presence of either an Fe(II)-bearing mineral or dead biomass (DB) catalyses chemodenitrification, two different sets of anoxic batch experiments were conducted: 2 mM Fe(II) was added to a low-phosphate medium, resulting in the precipitation of vivianite (Fe3(PO4)2), to which 2 mM nitrite (NO2-) was later added, with or without an autoclaved cell suspension (∼1.96×108 cells mL−1) of Shewanella oneidensis MR-1. Concentrations of nitrite (NO2-), nitrous oxide (N2O), and iron (Fe2+, Fetot) were monitored over time in both set-ups to assess the impact of Fe(II) minerals and/or DB as catalysts of chemodenitrification. In addition, the natural-abundance isotope ratios of NO2- and N2O (δ15N and δ18O) were analysed to constrain the associated isotope effects. Up to 90 % of the Fe(II) was oxidized in the presence of DB, whereas only ∼65 % of the Fe(II) was oxidized under mineral-only conditions, suggesting an overall lower reactivity of the mineral-only set-up. Similarly, the average NO2- reduction rate in the mineral-only experiments (0.004±0.003 mmol L−1 d−1) was much lower than in the experiments with both mineral and DB (0.053±0.013 mmol L−1 d−1), as was N2O production (204.02±60.29 nmol L−1 d−1). The N2O yield per mole NO2- reduced was higher in the mineral-only set-ups (4 %) than in the experiments with DB (1 %), suggesting the catalysis-dependent differential formation of NO. N-NO2- isotope ratio measurements indicated a clear difference between both experimental conditions: in contrast to the marked 15N isotope enrichment during active NO2- reduction (15εNO2=+10.3 ‰) observed in the presence of DB, NO2- loss in the mineral-only experiments exhibited only a small N isotope effect (

Beschreibung: Temperature appears to be the best predictor of species composition of planktonic foraminifera communities, making it possible to use their fossil assemblages to reconstruct sea surface temperature (SST) variation in the past. However, the role of other environmental factors potentially modulating the spatial and vertical distribution of planktonic foraminifera species is poorly understood. This is especially relevant for environmental factors affecting the subsurface habitat. If such factors play a role, changes in the abundance of subsurface-dwelling species may not solely reflect SST variation. In order to constrain the effect of subsurface parameters on species composition, we here characterize the vertical distribution of living planktonic foraminifera community across an east–west transect through the subtropical South Atlantic Ocean, where SST variability was small, but the subsurface water mass structure changed dramatically. Four planktonic foraminifera communities could be identified across the top 700 m of the transect. Gyre and Agulhas Leakage surface faunas were predominantly composed of Globigerinoides ruber, Globigerinoides tenellus, Trilobatus sacculifer, Globoturborotalita rubescens, Globigerinella calida, Tenuitella iota, and Globigerinita glutinata, and these only differed in terms of relative abundances (community composition). Upwelling fauna was dominated by Neogloboquadrina pachyderma, Neogloboquadrina incompta, Globorotalia crassaformis, and Globorotalia inflata. Thermocline fauna was dominated by Tenuitella fleisheri, Globorotalia truncatulinoides, and Globorotalia scitula in the west and by G. scitula only in the east. The largest part of the standing stock was consistently found in the surface layer, but SST was not the main predictor of species composition either for the depth-integrated fauna across the stations or at individual depth layers. Instead, we identified a pattern of vertical stacking of different parameters controlling species composition, reflecting different aspects of the pelagic habitat. Whereas productivity appears to dominate in the mixed layer (0–60 m), physical properties (temperature, salinity) become important at intermediate depths and in the subsurface, a complex combination of factors including oxygen concentration is required to explain the assemblage composition. These results indicate that the seemingly straightforward relationship between assemblage composition and SST in sedimentary assemblages reflects vertically and seasonally integrated processes that are only indirectly linked to SST. It also implies that fossil assemblages of planktonic foraminifera should also contain a signature of subsurface processes, which could be used for paleoceanographic reconstructions.

Beschreibung: Light-use efficiency defines the ability of primary producers to convert sunlight energy to primary production and is computed as the ratio between the gross primary production and the intercepted photosynthetic active radiation. While this measure has been applied broadly within terrestrial ecology to investigate habitat resource-use efficiency, it remains underused within the aquatic realm. This report provides a conceptual framework to compute hourly and daily light-use efficiency using underwater O2 eddy covariance, a recent technological development that produces habitat-scale rates of primary production under unaltered in situ conditions. The analysis, tested on two benthic flux datasets, documents that hourly light-use efficiency may approach the theoretical limit of 0.125 O2 per photon under low-light conditions, but it decreases rapidly towards the middle of the day and is typically 10-fold lower on a 24 h basis. Overall, light-use efficiency provides a useful measure of habitat functioning and facilitates site comparison in time and space.

Beschreibung: The CloudRoots field experiment was designed to obtain a comprehensive observational dataset that includes soil, plant, and atmospheric variables to investigate the interaction between a heterogeneous land surface and its overlying atmospheric boundary layer at the sub-hourly and sub-kilometre scale. Our findings demonstrate the need to include measurements at leaf level to better understand the relations between stomatal aperture and evapotranspiration (ET) during the growing season at the diurnal scale. Based on these observations, we obtain accurate parameters for the mechanistic representation of photosynthesis and stomatal aperture. Once the new parameters are implemented, the model reproduces the stomatal leaf conductance and the leaf-level photosynthesis satisfactorily. At the canopy scale, we find a consistent diurnal pattern on the contributions of plant transpiration and soil evaporation using different measurement techniques. From highly resolved vertical profile measurements of carbon dioxide (CO2) and other state variables, we infer a profile of the CO2 assimilation in the canopy with non-linear variations with height. Observations taken with a laser scintillometer allow us to quantify the non-steadiness of the surface turbulent fluxes during the rapid changes driven by perturbation of photosynthetically active radiation by cloud flecks. More specifically, we find 2 min delays between the cloud radiation perturbation and ET. To study the relevance of advection and surface heterogeneity for the land–atmosphere interaction, we employ a coupled surface–atmospheric conceptual model that integrates the surface and upper-air observations made at different scales from leaf to the landscape. At the landscape scale, we calculate a composite sensible heat flux by weighting measured fluxes with two different land use categories, which is consistent with the diurnal evolution of the boundary layer depth. Using sun-induced fluorescence measurements, we also quantify the spatial variability of ET and find large variations at the sub-kilometre scale around the CloudRoots site. Our study shows that throughout the entire growing season, the wide variations in stomatal opening and photosynthesis lead to large diurnal variations of plant transpiration at the leaf, plant, canopy, and landscape scales. Integrating different advanced instrumental techniques with modelling also enables us to determine variations of ET that depend on the scale where the measurement were taken and on the plant growing stage.

Beschreibung: In the western Mediterranean Sea, Levantine intermediate waters (LIW), which circulate below the surface productive zone, progressively accumulate nutrients along their pathway from the Tyrrhenian Sea to the Algerian Basin. This study addresses the role played by diffusion in the nutrient enrichment of the LIW, a process particularly relevant inside step-layer structures extending down to deep waters – structures known as thermohaline staircases. Profiling float observations confirmed that staircases develop over epicentral regions confined in large-scale circulation features and maintained by saltier LIW inflows on the periphery. Thanks to a high profiling frequency over the 4-year period 2013–2017, float observations reveal the temporal continuity of the layering patterns encountered during the cruise PEACETIME and document the evolution of layer properties by about +0.06 ∘C in temperature and +0.02 in salinity. In the Algerian Basin, the analysis of in situ lateral density ratios untangled double-diffusive convection as a driver of thermohaline changes inside epicentral regions and isopycnal diffusion as a driver of heat and salt exchanges with the surrounding sources. In the Tyrrhenian Sea, the nitrate flux across thermohaline staircases, as opposed to the downward salt flux, contributes up to 25 % of the total nitrate pool supplied to the LIW by vertical transfer. Overall, however, the nutrient enrichment of the LIW is driven mostly by other sources, coastal or atmospheric, as well as by inputs advected from the Algerian Basin.

Beschreibung: Peatlands store ∼ 20 %–30 % of the global soil organic carbon stock and are an important source of dissolved organic carbon (DOC) for inland waters. Recent improvements for in situ optical monitoring revealed that the DOC concentration in streams draining peatlands is highly variable, showing seasonal variation and short and intense DOC concentration peaks. This study aimed to statistically determine the variables driving stream DOC concentration variations at seasonal and event scales. Two mountainous peatlands (one fen and one bog) were monitored in the French Pyrenees to capture their outlet DOC concentration variability at a high-frequency rate (30 min). Abiotic variables including precipitation, stream temperature and water level, water table depth, and peat water temperature were also monitored at high frequency and used as potential predictors to explain DOC concentration variability. Results show that at both sites DOC concentration time series can be decomposed into a seasonal baseline interrupted by many short and intense peaks of higher concentrations. The DOC concentration baseline is driven, at the seasonal scale, by peat water temperature. At the event scale, DOC concentration increases are mostly driven by a rise in the water table within the peat at both sites. Univariate linear models between DOC concentration and peat water temperature or water table increases show greater efficiency at the fen site. Water recession times were derived from water level time series using master recession curve coefficients. They vary greatly between the two sites but also within one peatland site. They partly explain the differences between DOC dynamics in the studied peatlands, including peat porewater DOC concentrations and the links between stream DOC concentration and water table rise within the peatlands. This highlights that peatland complexes are composed of a mosaic of heterogeneous peat units distinctively producing or transferring DOC to streams.

Beschreibung: Anoxic sediments, as compared to oxic settings, encompass a much higher proportion of relatively labile and thus more reactive organic matter, naturally giving rise to structural changes of the organic molecules themselves, as well as cross-linking between them (e.g., through reactive sulfur species). Both processes transform the original biomolecules into geomolecules. For the oxic environment, these intermolecular and intramolecular transformations also operate, but cross-linking may be less important since the labile, reactive component is rapidly removed. As such, one may expect a structurally better preservation of the more refractory initial biomolecules in the oxic environment. To test this hypothesis, initially identical biomolecules need to be compared between different preservational environments. Here, we use the species-specific morphology of organic microfossils to assure a single initial biosynthetic product (the cysts of the fossil dinoflagellate species Thalassiphora pelagica) for comparison. We assess the macromolecular structures of cysts from the Eocene (∼40 Ma) sulfidic Rhine Graben and the oxic Kerguelen Plateau and compare them with each other and the structures of recent cysts. While between the sites the T. pelagica cysts are morphologically identical and show no signs of morphological modification, pyrolysis gas chromatography mass spectroscopy and micro Fourier transform infrared analyses show that their macromolecular characteristics are strongly different. Comparison with recent cysts shows that the cysts deposited in the sulfidic Rhine Graben show a strong additional contribution of long-chain aliphatic moieties and thus less diagenetic intermolecular cross-linking. The presence of organic sulfur identifies natural volcanization as one of the diagenetic processes. Furthermore, we observe a loss of bound oxygen and no trace of the original carbohydrate signature of the cyst wall biomacromolecule. The material deposited in the oxic sediments of the Kerguelen Plateau shows no traces of sulfurization. It shows a minor contribution of short carbon chains only and thus less diagenetic intermolecular cross-linking. Furthermore, a carbohydrate signature was still preserved evidencing a better molecular preservation of the initial biomacromolecule, supporting our initial hypothesis. This shows that excellent morphological preservation does not imply excellent chemical preservation. It also leads to the conclusion that the best preservation of molecular structure is not necessarily where most organic matter gets preserved, which, in turn, is important for understanding the nature and fate of sedimentary organic matter and its isotopic signature.

Beschreibung: Boron isotope systematics of planktonic foraminifera from core-top sediments and culture experiments have been studied to investigate the sensitivity of δ11B of calcite tests to seawater pH. However, our knowledge of the relationship between δ11B and pH remains incomplete for many taxa. Thus, to expand the potential scope of application of this proxy, we report δ11B data for seven different species of planktonic foraminifera from sediment core tops. We utilize a method for the measurement of small samples of foraminifera and calculate the δ11B-calcite sensitivity to pH for Globigerinoides ruber, Trilobus sacculifer (sacc or without sacc), Orbulina universa, Pulleniatina obliquiloculata, Neogloboquadrina dutertrei, Globorotalia menardii, and Globorotalia tumida, including for unstudied core tops and species. These taxa have diverse ecological preferences and are from sites that span a range of oceanographic regimes, including some that are in regions of air–sea equilibrium and others that are out of equilibrium with the atmosphere. The sensitivity of δ11Bcarbonate to δ11Bborate (e.g., Δδ11Bcarbonate∕Δδ11Bborate) in core tops is consistent with previous studies for T. sacculifer and G. ruber and close to unity for N. dutertrei, O. universa, and combined deep-dwelling species. Deep-dwelling species closely follow the core-top calibration for O. universa, which is attributed to respiration-driven microenvironments likely caused by light limitation and/or symbiont–host interactions. Our data support the premise that utilizing boron isotope measurements of multiple species within a sediment core can be utilized to constrain vertical profiles of pH and pCO2 at sites spanning different oceanic regimes, thereby constraining changes in vertical pH gradients and yielding insights into the past behavior of the oceanic carbon pumps.