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  • Wiley  (109,907)
  • Molecular Diversity Preservation International
  • 2005-2009  (115,367)
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  • 1
    Publication Date: 2024-01-07
    Description: Drift is a prominent parameter characterizing the Arctic sea ice cover that has a deep impact on the climate system. Hence it is a key issue to both the remote sensing as well as the modeling community, to provide reliable sea ice drift fields. This study focuses on the comparison of sea ice drift results from different sea ice‐ocean coupled models and the validation with observational data in the period 1979–2001. The models all take part in the Arctic Ocean Model Intercomparison Project (AOMIP) and the observations are mainly based on satellite imagery. According to speed distributions, one class of models has a mode at drift speeds around 3 cm s −1 and a short tail toward higher speeds. Another class shows a more even frequency distribution with large probability of drift speeds of 10 to 20 cm s −1 . Observations clearly agree better with the first class of model results. Reasons for these differences are manifold and lie in discrepancies of wind stress forcing as well as sea ice model characteristics and sea ice‐ocean coupling. Moreover, we investigated the drift patterns of anticyclonic and cyclonic wind‐driven regimes. The models are capable of producing realistic drift pattern variability. The winter of 1994/1995 stands out because of its maximum in Fram Strait ice export. Although export estimates of some models agree with observations, the corresponding inner Arctic drift pattern is not reproduced. The reason for this is found in the wind‐forcing as well as in differences in ocean velocities.
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  • 2
    Publication Date: 2023-11-17
    Description: Structure and growth of the Izu‐Bonin‐Mariana arc crust: 1. Seismic constraint on crust and mantle structure of the Mariana arc–back‐arc system Narumi Takahashi Institute for Research on Earth Evolution Japan Agency for Marine‐Earth Science and Technology Kanagawa Japan Shuichi Kodaira Institute for Research on Earth Evolution Japan Agency for Marine‐Earth Science and Technology Kanagawa Japan Yoshiyuki Tatsumi Institute for Research on Earth Evolution Japan Agency for Marine‐Earth Science and Technology Kanagawa Japan Yoshiyuki Kaneda Institute for Research on Earth Evolution Japan Agency for Marine‐Earth Science and Technology Kanagawa Japan Kiyoshi Suyehiro Institute for Research on Earth Evolution Japan Agency for Marine‐Earth Science and Technology Kanagawa Japan A high‐resolution seismic velocity model is presented for the crust and upper mantle of the Mariana arc–back‐arc system (MABS) based on active source seismic profiling. The major characteristics are (1) slow mantle velocity of 〈8 km s −1 in the uppermost mantle, especially, and deep reflectors under the Mariana arc (MA) and the West Mariana Ridge (WMR), (2) a deep reflector in the upper mantle beneath the relative thick crust of the Mariana Trough (MT) axis, (3) distribution of lower‐velocity lower crusts (6.7–6.9 km s −1 ) beneath the volcanic front and adjacent to the MT, and (4) high‐velocity lower crust (7.2–7.4 km s −1 ) beneath the boundary regions between the MA and MT, and between the WMR and the Parece Vela Basin (PVB), adding to structural characteristics of crust and upper mantle beneath the MABS. Of the characteristics described above, characteristic 1 suggests that the origins of the slow mantle velocity and the deep reflectors be explained by transfer of the lower crustal residues to the upper mantle across the Moho, considering that the WMR is extinct arc currently. On the other hand, characteristic 2 suggests that the origin of deep reflectors beneath the MT axis might be lower velocity materials due to the diffractive signals with strong amplitudes, characteristic 3 suggests that the lower‐velocity lower crust advanced crustal growth and characteristic 4 suggests that the high‐velocity lower crust beneath arc–back‐arc transition zone is composed of mafic/ultramafic materials created by extensive partial melting of mantle peridotites or last stage of the arc magmatism rather than serpentinized peridotite.
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  • 3
    Publication Date: 2023-11-08
    Description: On the Pacific margin off central Costa Rica, an anomalous lens-shaped zone is located between the overriding plate and the subducting oceanic lithosphere approximately 25 km landward of the deformation front. This feature was previously recognized in reflection seismic data when it was termed 'megalens'. Its origin and seismic velocity structure, however, could not unambiguously be derived from earlier studies. Therefore during RV SONNE cruise SO163, seismic wide-angle data were acquired in 2002 using closely spaced ocean bottom hydrophones and seismometers along two parallel strike and two parallel dip lines above the 'megalens', intersecting on the middle slope. The P-wave velocities and structure of the subducting oceanic Cocos Plate and overriding Caribbean Plate were determined by modelling the wide-angle seismic data in combination with the analysis of coincident reflection seismic data and the use of synthetic seismograms. The margin wedge is defined by high seismic velocities (4.3-6.1 km s(-1)) identified within a wedge-shaped body covered by a slope sediment drape. It is divided into two layers with different velocity gradients. The lower margin wedge is clearly constrained by decreasing velocities trenchward and terminates beneath the middle slope at the location of the 'megalens'. Seismic velocities of the 'megalens' are lower (3.8-4.3 km s(-1)) relative to the margin wedge. We propose that the 'megalens' represents hybrid material composed of subducted sediment and eroded fragments from the base of the upper plate. Upward-migrating overpressured fluids weaken the base of the margin wedge through hydrofracturing, thus causing material transfer from the upper plate to the lower plate. Results from amplitude modelling support that the 'megalens' observed off central Costa Rica is bound by a low-velocity zone documenting fluid drainage from the plate boundary to the upper plate.
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  • 4
    Publication Date: 2023-03-22
    Description: Lilliput was discovered in 2005 as the southernmost known hydrothermal field along the Mid-Atlantic Ridge. It is exceptional in that it lacks high-temperature venting probably because of a thickened crust. The absence of thermophilic and hyperthermophilic prokaryotes in emissions supports the argument against the presence of a hot subsurface at Lilliput, as is typically suggested for diffuse emissions from areas of high-temperature venting. The high phylogenetic diversity and novelty of bacteria observed could be because of the low-temperature influence, the distinct location of the hydrothermal field or the Bathymodiolus assemblages covering the sites of discharge. The low-temperature fluids at the Lilliput are characterized by lowered pH and slightly elevated hydrogen (16 nM) and methane (∼2.6 μM) contents compared with ambient seawater. No typical hydrogen and methane oxidizing prokaryotes were detected. The higher diversity of reverse tricarboxylic acid genes and the form II RubisCO genes of the Calvin Benson-Bassham (CBB) cycle compared with the form I RubisCO genes of the CBB cycle suggests that the chemoautotrophic community is better adapted to low oxygen concentrations. Thiomicrospira spp. and Epsilonproteobacteria dominated the autotrophic community. Sulfide is the most abundant inorganic energy source (0.5 mM). Diverse bacteria were associated with sulfur cycling, including Gamma-, Delta- and Epsilonproteobacteria, with the latter being the most abundant bacteria according to fluorescence in situ hybridization. With members of various Candidate Divisions constituting for 25% of clone library sequences we suggest that their role in vent ecosystems might be more important than previously assumed and propose potential mechanisms they might be involved in at the Lilliput hydrothermal field.
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  • 5
    Publication Date: 2022-05-25
    Description: © 2009 The Authors. This article is distributed under the terms of the Creative Commons Attribution (3.0) License. The definitive version was published in Sensors 9 (2009): 404-429, doi:10.3390/s90100404.
    Description: An instrument has been built to carry out continuous in-situ measurement of small differences in water pressure, conductivity and temperature, in natural surface water and groundwater systems. A low-cost data telemetry system provides data on shore in real time if desired. The immediate purpose of measurements by this device is to continuously infer fluxes of water across the sediment-water interface in a complex estuarine system; however, direct application to assessment of sediment-water fluxes in rivers, lakes, and other systems is also possible. Key objectives of the design include both low cost, and accuracy of the order of ±0.5 mm H2O in measured head difference between the instrument’s two pressure ports. These objectives have been met, although a revision to the design of one component was found to be necessary. Deployments of up to nine months, and wireless range in excess of 300 m have been demonstrated.
    Keywords: Pressure sensor ; Wireless ; Hydrology ; Data logger ; Oceanographic instrumentation
    Repository Name: Woods Hole Open Access Server
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  • 6
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    In:  The water framework directive : ecological and chemical status monitoring
    Publication Date: 2022-03-21
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  • 7
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    In:  Self-organising maps: Applications in geographic information sciences
    Publication Date: 2022-03-21
    Type: info:eu-repo/semantics/bookPart
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  • 8
    Publication Date: 2021-09-07
    Description: This is the first record of intersexuality to have been found within the Cephalopoda. Seven out of 16 sexually mature Ancistrocheirus lesueurii males from southern African waters had nidamental glands in the mantle cavity in addition to a normally developed male reproductive system (spermatophoric complex, testis and hectocotylus). The frequency of occurrence suggests that feminization in male A. lesueurii is not a rare phenomenon in the south-eastern Atlantic. Normal A. lesueurii shows sexual size dimorphism, with females growing larger than males. The intersexual males formed a distinct size group intermediate between normal males and females, and their testis mass and spermatophore length were significantly larger than in normal males. The absence of oocytes and oviducts in intersexual males indicates that feminization represents pseudohermaphroditism. Intersexuality does not seem to affect male functionality and is apparently advantageous in that larger body size is accompanied by larger testis and spermatophores.
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  • 9
    Publication Date: 2021-09-06
    Description: The inverse relationship between egg size in marine animals and water temperature was simultaneously described by two outstanding marine scientists: G. Thorson and T.S. Rass. This rule consists of two different phenomena. Thorson's rule describes ecological processes related to changes in larval biology and morphology that are caused by a selective pressure of natural selection on the different types of larval development. It belongs to the realm of macro-evolution. Rass's rule describes physiological processes within populations and species, and between closely related species. This is not related to changes in reproductive strategy, and therefore belongs to the realm of micro-evolution and to the early stages of macro-evolution. Populations begin to produce larger eggs in colder environments because of phenotypic plasticity. Thorson's rule describes temperature-dependent changes in the relative abundance of small- and large-egged species, whereas Rass's rule describes a temperature-dependent relative position of both groups within an adaptive range of reproductive strategies.
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  • 10
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    In:  Conservation Biology, 23 (4). pp. 847-858.
    Publication Date: 2021-08-24
    Description: The deep ocean is home to the largest ecosystems on our planet. This vast realm contains what may be the greatest number of animal species, the greatest biomass, and the greatest number of individual organisms in the living world. Humans have explored the deep ocean for about 150 years, and most of what is known is based on studies of the deep seafloor. In contrast, the water column above the deep seabed comprises more than 90% of the living space, yet less than 1% of this biome has been explored. The deep pelagic biota is the largest and least-known major faunal group on Earth despite its obvious importance at the global scale. Pelagic species represent an incomparable reservoir of biodiversity. Although we have yet to discover and describe the majority of these species, the threats to their continued existence are numerous and growing. Conserving deep pelagic biodiversity is a problem of global proportions that has never been addressed comprehensively. The potential effects of these threats include the extensive restructuring of entire ecosystems, changes in the geographical ranges of many species, large-scale elimination of taxa, and a decline in biodiversity at all scales. This review provides an initial framework of threat assessment for confronting the challenge of conserving deep pelagic biodiversity; and it outlines the need for baseline surveys and protected areas as preliminary policy goals.
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  • 11
    Publication Date: 2021-08-24
    Description: Aim  One of the most recognized ecological paradigms on earth is the increase in species richness from the poles towards the equator. Here we undertake a comprehensive survey of the latitudinal gradients of species richness (LGSR) of coastal cephalopod fauna in the western (WA) and eastern margins (EA) of the Atlantic Ocean, and test climate and non-climate theories to explain the variation in diversity. Location  The coastal Atlantic Ocean. Methods  The diversity and geographical ranges of coastal cephalopods were investigated by means of an exhaustive survey of the primary literature, reports and on-line data bases. In order to test the productivity, ambient energy and area hypotheses, we investigated the relationship between diversity and net primary production (NPP), sea surface temperature (SST; measure of solar energy input) and continental shelf area, respectively. Results  LGSR of cephalopod molluscs are present at both Atlantic coasts, but are quite distinct from each other. Historical processes (rise of the Central American Isthmus, formation of ‘Mare Lago’ and glaciations) explained much of the shape and the zenith of LGSR. Contemporary climate and non-climate variables also each explained over 83% and 50% of the richness variation in WA and EA, respectively, and the best fitted models accounted for 〉 92% of the variance. By combining latitude with depth a strong Rapoport effect was observed in WA but not in EA. Main conclusions  Besides the evolutionary history, we demonstrate that the contemporary environmental gradients (SST and NPP), shelf area and extent of coral habitat can predict many of the diversity patterns. The longitudinal difference in Rapoport's bathymetric rule is attributed to western fauna specialization to shallow coral reef habitats and greater ecological tolerance of eastern fauna to upwelling ecosystem dynamics. A combined approach of historical biogeography and species–area–energy theories was essential to fully understand broad-scale variation in cephalopod biodiversity.
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  • 12
    Publication Date: 2021-08-23
    Description: Understanding how environmental forcing has generated and maintained large-scale patterns of biodiversity is a key goal of evolutionary research and critical to predicting the impacts of global climate change. We suggest that the initiation of the global thermohaline circulation provided a mechanism for the radiation of Southern Ocean fauna into the deep sea. We test this hypothesis using a relaxed phylogenetic approach to coestimate phylogeny and divergence times for a lineage of octopuses with Antarctic and deep-sea representatives. We show that the deep-sea lineage had their evolutionary origins in Antarctica, and estimate that this lineage diverged around 33 million years ago (Ma) and subsequently radiated at 15 Ma. Both of these dates are critical in development of the thermohaline circulation and we suggest that this has acted as an evolutionary driver enabling the Southern Ocean to become a centre of origin for deep-sea fauna. This is the first unequivocal molecular evidence that deep-sea fauna from other ocean basins originated from Southern Ocean taxa and this is the first evidence to be dated.
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  • 13
    Publication Date: 2021-08-23
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  • 14
    Publication Date: 2021-08-23
    Description: To determine the pattern of spatial genetic structure in the endemic Southern Ocean octopus Adelieledone polymorpha, microsatellite loci were isolated from partial genomic libraries enriched for repetitive DNA motifs. Seven dinucleotide and two trinucleotide microsatellite loci were isolated successfully and levels of polymorphism were quantified in 34 individuals sampled from the Southern Ocean near South Georgia. No pairs of microsatellite loci were linked significantly; however, one locus deviated (P 〈 0.05) from Hardy–Weinberg equilibrium. Overall, the nine loci produced between five and 16 alleles, with observed and expected heterozygosities varying between 0.22 and 0.86 and between 0.21 and 0.94 respectively. This is the first description of microsatellite loci from an octopus endemic to the Southern Ocean, and these genetic markers are being used to quantify spatial structure within A. polymorpha.
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  • 15
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    In:  Aquaculture Research, 36 (9). pp. 876-881.
    Publication Date: 2021-08-23
    Description: Loligo vulgaris is a commercially important squid throughout the Mediterranean region and is a candidate species in biomedical and aquaculture research. Some loligo species (L. opalescens, L. forbesi, Sepiteuthis lessoniana) have now been cultured through some successive generations in closed, recirculating seawater systems. The effects of salinity on hatching European Squid (L. vulgaris Lamarck, 1798) eggs were investigated during November 2004. The egg capsules were incubated directly in salinity of 32, 34, 36, 38, 40, 42 and 37 g L−1 (control group) at 19.8°C (SD 1.2°C), and a photoperiodicity of 12 h light:12 h dark for 16–23 days before hatching. In all treatments, the eggs were developed and hatched normally after 16–22 days at 32 g L−1, 17–22 days at 34, 18–21 days at 42 g L−1, 18–22 days at 36 and 40 g L−1, 19–22 days at 37 g L−1 and 19–23 h at 38 g L−1. In the experiments, the highest hatching rate and hatching success (HS) of the eggs were obtained at 38 g L−1 (hatching rate: 100% (SD 0%) and HS: 96.7% (SD 3.5%)) and the lowest hatching rate at 42 g L−1 (hatching rate: 3% (SD 6%) and HS: 0%). Dorsal mantle lengths (DML) of new hatchlings ranged from 2.08 to 2.80 mm. The present study showed that salinity affects the hatching rate and HS of eggs and first hatching time and DML of paralarvae in L. vulgaris. The squid eggs at stage 11 (I) can tolerate 5 g L−1 reduction and 3 g L−1 increase in salinity.
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  • 16
    Publication Date: 2021-06-16
    Description: We give details of the biological and pathological findings in a mass stranding of 19 white-sided dolphins on the west coast of Ireland. The pod consisted of adults and calves; no juveniles were present. The calf of a recently parturient female was not found. The presence of small foetuses suggested that mating took place in late August or early September. The largest and oldest male was severely diseased but the remainder of the pod were in good health although some minor lesions were found. The site where the animals came ashore was compatible with the geomagnetic theory of mass strandings.
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  • 17
    Publication Date: 2021-05-19
    Description: 1. Seahorses (Hippocampus spp.), many of which are listed as Vulnerable or Endangered on the IUCN Red List, are traded worldwide as souvenirs, aquarium fish and, primarily, for use in traditional medicines. Given concern over the sustainability of this trade, the genus was added to Appendix II of the Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) in May 2004. 2. This paper reports findings of the first ever survey of seahorse trade in Africa, conducted in Kenya and Tanzania in May and June 2000. 3. Seahorse trade in Kenya was found to be negligible, with approximately 10 live seahorses exported as aquarium fish annually. Until 1998, however, Kenya may have imported somewhere from 1 to 2.3 t of dried seahorses annually from Tanzania for re-export to Asian medicine markets. Seahorse trade in Tanzania remained substantial, with at least 630–930 kg of dried seahorse exported directly to Asia each year. 4. Accounts of declines in seahorse availability and seahorse size, although few in number, could be early warning signs that wild populations are suffering, at least locally. Close monitoring of future developments in the trade will be essential to allow for timely conservation action as and when necessary, and would contribute to our understanding of the ecological and economical implications of small-scale, non-food fisheries. Copyright # 2004 John Wiley & Sons, Ltd.
    Description: Published
    Keywords: Hippocampus spp ; By catch ; Non-food fisheries ; Seahorse trade ; Endangered species ; Aquatic animals
    Repository Name: AquaDocs
    Type: Journal Contribution , Non-Refereed , Article
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  • 18
    Publication Date: 2021-02-22
    Description: King Penguins Aptenodytes patagonicus which were rearing chicks were studied during three summers from November 1991 to March 1994 at South Georgia. Stomach samples (n=115) collected by flushing had a mean mass of 1308 g. Fish mass was allocated to each species based on the relationship between fish mass and otolith length. Three mesopelagic lanternfishes (Myctophidae), Krefftichthys anderssoni, Electrona carlsbergi and Protomyctophum choriodon, dominated the diet both by numbers and mass. They were small fish with mean mass of 3–7 g. Overall, K. anderssoni dominated the diet in terms of numbers and mass. Although Barracudina Notolepis coatsi occurred in 〈3% of the diet by numbers, it was large (106 g) and was second most important in terms of mass. Squid represented 〈3% of the diet by mass. Although the chick‐rearing success was poor in the 1993–1994 summer, meal size was not reduced but foraging trips were longer. In the 1993–1994 summer, a larger proportion of the otoliths were not identifiable because they were more completely digested. Fewer otoliths were identified as being those of K. anderssoni, but we argue that about 90% of the unidentified otoliths were K. anderssoni. There was also more squid and N. coatsi in the diet during the poor summer. A consistent trend was that P. choriodon was rare or absent in early summer but more important later in the year, and at the end of 1992–1993, it was the dominant prey. We conclude that myctophid fish, especially K. anderssoni, are the main summer prey of King Penguins rearing chicks at South Georgia, as found in other recent studies in the Southern Ocean.
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  • 19
    Publication Date: 2020-07-31
    Description: Sections PDFPDF Tools Share Abstract Many trophically transmitted parasites have complex life cycles: they pass through at least one intermediate host before reproducing in their final host. Despite their economic and theoretical importance, the evolution of such cycles has rarely been investigated. Here, combining a novel modeling approach with experimental data, we show for the first time that an optimal transfer time between hosts exists for a “model parasite,” the tapeworm Schistocephalus solidus , from its first (copepod) to its second (fish) intermediate host. When transferring between hosts around this time, (1) parasite performance in the second intermediate host, (2) reproductive success in the final host, and (3) fitness in the next generation is maximized. At that time, the infected copepod's behavior changes from predation suppression to predation enhancement. The optimal time for switching manipulation results from a trade‐off between increasing establishment probability in the next host and reducing mortality in the present host. Our results show that these manipulated behavioral changes are adaptive for S. solidus , rather than an artifact, as they maximize parasite fitness.
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  • 20
    Publication Date: 2020-07-31
    Description: The use of filamentous Rhizopus for lactic acid production is facing a challenge due to its low yield mainly caused by the difficulty to control its morphology in submerged fermentation processes. This study was aimed at investigating the impacts of cultivation parameters on the morphology of Rhizopus arrhizus DAR 36017 and lactic acid production using waste potato starch in a laboratory scale bubble column reactor (BCR). The fungal morphology was significantly influenced by carbon sources, process pH, starch concentrations, sparger designs and aeration rates. The favorable morphology for lactic acid production was a freely dispersed small pellet, which was achieved under operation conditions at pH 5.0–6.0, starch concentrations of 60–120 g/L and aeration rates of 0.2–0.8 vvm using a sintered stainless steel disc sparger. Optimal cultivation conditions at pH 6.0 and an aeration rate of 0.4 vvm resulted in the formation of freely dispersed small pellets and 103.8 g/L lactic acid with a yield of 87 % from 120 g/L liquefied potato starch in 48 h. The overall results in terms of lactic acid yield and productivity are comparable to those reported in previous studies using immobilized Rhizopus cells in batch fermentations.
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  • 21
    Publication Date: 2020-07-31
    Description: Centimeter‐scale mineralogical and chemical analyses of a diffusely venting, ∼280°C sulfide structure (called Roane) from the Mothra Hydrothermal Field on the Juan de Fuca Ridge reveal a complex growth history. These analyses document four well‐defined zones, which from the exterior to the interior of the structure include a barite‐silica zone (Fossil Worm Tube Zone), a silica‐sulfide zone (Silica Zone), a sulfide‐silica zone (Outer Sulfide Zone), and a sulfide ± gordaite ± silica zone (Inner Sulfide Zone). These features are a product of a myriad of processes that include extensive mineral replacement, ingress of seawater, fracturing and breakout of hot hydrothermal fluids, significant conductive cooling, and the sustained, broad‐scale outflow of warm fluids from the walls through a porous and permeable matrix. Roane lacks an open, throughgoing, chalcopyrite‐lined, central conduit. Instead, it hosts an anastomosing, discontinuous network of tortuous channels within the interior of a sponge‐like matrix of amorphous silica, sulfide, sulfate, and clay minerals. Megafaunal communities at the summit and sides of this mature, diffusely venting chimney provide a constructional framework for new growth. Isolation of hydrothermal fluid from seawater during progressive fossilization of megafauna and the early formation of barite‐silica assemblages promote flow of higher‐temperature fluids within the interior. Continued isolation of interior higher‐temperature fluids, through increased mineral precipitation and expansion of the structure, leads to a Zn sulfide + pyrite‐dominated permeable matrix and a network of tortuous channels that form a central porous conduit. This conduit is shielded by a weakly silicified, metal sulfide inner wall and a strongly silicified outer wall. The most outer portions of the walls are highly porous and sites of significant advection and mixing between hydrothermal fluids and seawater. The mineralogy and chemistry of Roane are strongly affected by ammonia‐ammonium buffering of the pH during cooling of the hydrothermal fluids. The two major results of the buffering are (1) precipitation of Zn sulfide at higher temperatures than are typical for bare‐rock systems, leading to the correlation of Cu, Zn, Cd, and Se and (2) increased deposition of amorphous silica and clay minerals.
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  • 22
    Publication Date: 2020-07-27
    Description: Aspects of the formation of bone analog composites at 37°C are described. The composites are composed of hydroxyapatite (HAp) and the calcium salt of a biocompatible polymer and are capable of forming under in vivo conditions. Composite formation involves the formation of monolithic HAp from particulate calcium phosphate precursors while Ca ions liberated to the aqueous medium in which this reaction is occurring form crosslinks with the acidic polymer. The reactants are poly[bis(carboxylatophenoxy)phosphazene] (acid-PCPP), tetracalcium phosphate [Ca4(PO4)2O, TetCP], and anhydrous dicalcium phosphate (CaHPO4, DCPA). The effects of the proportion of polymer (5, 10, or 15 wt %) on the kinetics of HAp formation were studied. Compositional evolution of the solid calcium phosphates present was followed by X-ray diffraction and infrared spectroscopy analyses. HAp formation through a dissolution-precipitation process provided a mildly alkaline medium suitable for deprotonation of the acid-PCPP and for the formation of the calcium crosslinks, as monitored by infrared spectroscopy. Concurrence of crosslinking of the polymer and HAp formation was established, indicating true composite formation can be realized at physiologic temperature.
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  • 23
    Publication Date: 2020-07-24
    Description: We are investigating effects of the depsipeptide geodiamolide H, isolated from the Brazilian sponge Geodia corticostylifera, on cancer cell lines grown in 3D environment. As shown previously geodiamolide H disrupts actin cytoskeleton in both sea urchin eggs and breast cancer cell monolayers. We used a normal mammary epithelial cell line MCF 10A that in 3D assay results formation of polarized spheroids. We also used cell lines derived from breast tumors with different degrees of differentiation: MCF7 positive for estrogen receptor and the Hs578T, negative for hormone receptors. Cells were placed on top of Matrigel. Spheroids obtained from these cultures were treated with geodiamolide H. Control and treated samples were analyzed by light and confocal microscopy. Geodiamolide H dramatically affected the poorly differentiated and aggressive Hs578T cell line. The peptide reverted Hs578T malignant phenotype to polarized spheroid-like structures. MCF7 cells treated by geodiamolide H exhibited polarization compared to controls. Geodiamolide H induced striking phenotypic modifications in Hs578T cell line and disruption of actin cytoskeleton. We investigated effects of geodiamolide H on migration and invasion of Hs578T cells. Time-lapse microscopy showed that the peptide inhibited migration of these cells in a dose-dependent manner. Furthermore invasion assays revealed that geodiamolide H induced a 30% decrease on invasive behavior of Hs578T cells. Our results suggest that geodiamolide H inhibits migration and invasion of Hs578T cells probably through modifications in actin cytoskeleton. The fact that normal cell lines were not affected by treatment with geodiamolide H stimulates new studies towards therapeutic use for this peptide.
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  • 24
    Publication Date: 2020-07-22
    Description: The utility of cuticular autofluorescence for the visualization of copepod morphology by means of confocal laser scanning microscopy (CLSM) was examined. Resulting maximum intensity projections give very accurate information on morphology and show even diminutive structures such as small setae in detail. Furthermore, CLSM enables recognition of internal structures and differences in material composition. Optical sections in all layers and along all axes of the specimens can be obtained by CLSM. The facile and rapid preparation method bears no risk of artefacts or damage occurring to the preparations and the visualized specimens can be used for later analyses allowing for the investigation of irreplaceable type specimens or parts of them. These features make CLSM a very effective tool for both taxonomical and ecological studies in small crustaceans; however, the maximum thickness of the specimens is limited to a few hundred micrometers. Three-dimensional models based on CLSM image stacks allow observation of the preparations from all angles and can permit, improve and speed up studies on functional morphology. The visualization method described has a strong potential to become a future standard technique in aquatic biology due to its advantages over conventional light microscopy and scanning electron microscopy.
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  • 25
    Publication Date: 2020-07-20
    Description: Phytoplankton deal with metal toxicity using a variety of biochemical strategies. One of the strategies involves glutathione (GSH) and phytochelatins (PCs), which are metal-binding thiol peptides produced by eukaryotes and these compounds have been related to several intracellular functions, including metal detoxification, homeostasis, metal resistance and protection against oxidative stress. This paper assesses our state of knowledge on the production of PCs and GSH by marine phytoplankton in laboratory and field conditions and the possible applications of PCs for environmental purposes. Good relationships have been observed between metal exposure and PC production in phytoplankton in the laboratory with Cd, Pb, and Zn showing the greatest efficacy, thereby indicating that PCs have a potential for application as a biomarker. Fewer studies on PC distributions in particulate material have been undertaken in the field. These studies show that free Cu has a strong relationship with the levels of PC in the particulate material. The reason for this could be because Cu is a common contaminant in coastal waters. However it could also be due to the lack of measurements of other metals and their speciation. GSH shows a more complex relationship to metal levels both in the laboratory and in the field. This is most likely due to its multifunctionality. However, there is evidence that phytoplankton act as an important source of dissolved GSH in marine waters, which may form part of the strong organic ligands that control metal speciation, and hence metal toxicity. © 2006 by the Phycological Society of America.
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  • 26
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    In:  Journal of Chemical Technology & Biotechnology, 84 (1). pp. 6-12.
    Publication Date: 2020-07-14
    Description: OVERVIEW: Extraction and processing with supercritical fluids (SCF) is increasingly gaining importance in the food, pharmaceutical and chemical industries. Supercritical fluid extraction (SCFE) using carbon dioxide (CO2) as a solvent has emerged as a highly popular technology today over the conventional techniques for extraction of natural products for rapid, contamination‐free, tailor‐made extracts having superior quality and shelf‐life and high potency of active ingredients. IMPACT: The importance of SCFE is on the rise due to consumers' preferences for ‘natural’ as opposed to synthetic substances and, impending regulations for environmental protection, safety, nutritive and toxicity levels. APPLICATIONS: Newer applications of SCFs include separation and purification of chemicals, cleaning, coating, particle formation, textile dyeing, aerogel drying, reactions with separation and food preservation. Some fundamental aspects of SCFs, various processing technologies with SCFs, and a few newer potential applications are presented in this article.
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  • 27
    Publication Date: 2020-06-30
    Description: Lions were the most widespread carnivores in the late Pleistocene, ranging from southern Africa to the southern USA, but little is known about the evolutionary relationships among these Pleistocene populations or the dynamics that led to their extinction. Using ancient DNA techniques, we obtained mitochondrial sequences from 52 individuals sampled across the present and former range of lions. Phylogenetic analysis revealed three distinct clusters: (i) modern lions, Panthera leo; (ii) extinct Pleistocene cave lions, which formed a homogeneous population extending from Europe across Beringia (Siberia, Alaska and western Canada); and (iii) extinct American lions, which formed a separate population south of the Pleistocene ice sheets. The American lion appears to have become genetically isolated around 340 000 years ago, despite the apparent lack of significant barriers to gene flow with Beringian populations through much of the late Pleistocene. We found potential evidence of a severe population bottleneck in the cave lion during the previous interstadial, sometime after 48 000 years, adding to evidence from bison, mammoths, horses and brown bears that megafaunal populations underwent major genetic alterations throughout the last interstadial, potentially presaging the processes involved in the subsequent end-Pleistocene mass extinctions.
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  • 28
    Publication Date: 2020-06-30
    Description: We investigated the effects of ircinin-1, a lipid compound (a C25 sesterterpene tetronic acid) isolated from marine sponges (Sarcotragus sp.), on the modulation of cell cycle and induction of apoptosis in SK-MEL-2 human skin cancer cells (mutant p53). Ircinin-1 treatment on SK-MEL-2 cells resulted in a dose-dependent inhibition of cell growth and induced apoptotic cell death. Flow cytometric analysis revealed that ircinin-1 resulted in G1 arrest in cell cycle progression which was associated with a marked decrease in the protein expression of D-type cyclins and their activating partners Cdk 4 and 6 with concomitant inductions of p21WAF1/CIP1 and p27KIP1. The induction of p21WAF1/CIP1 appears to be transcriptionally upregulated and is p53-independent. In addition, ircinin-1 suppressed the phosphorylation of pRb protein and increased the co-association of pRb or proliferating cell nuclear antigen (PCNA) with p21WAF1/CIP1 in these cells. Ircinin-1 treatment also resulted in induction of apoptosis as determined by morphological changes, DNA fragmentation, alternated ratio of Bax/Bcl-2, cleavages of poly(ADP-ribose) polymerase and PLC-γ1, and flow cytometric analysis. Ircinin-1 also induced cytochrome c release, cleavage activations of caspase-3 and -9, and upregulation of Fas and Fas-L. Even though the inhibitor of apoptosis protein (IAP) was expressed in ircinin-1-untreated or -treated SK-MEL-2 cells, only the level of cIAP-1, but not XIAP or cIAP-2, was decreased during ircinin-1-induced apoptosis at Western blot and RT-PCR studies. Taken together, these findings suggest that ircinin-1 has strong potential for development as an agent for prevention against skin cancer
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  • 29
    Publication Date: 2020-06-23
    Description: A multiproxy study of palaeoceanographic and climatic changes in northernmost Baffin Bay shows that major environmental changes have occurred since the deglaciation of the area at about 12 500 cal. yr BP. The interpretation is based on sedimentology, benthic and planktonic foraminifera and their isotopic composition, as well as diatom assemblages in the sedimentary records at two core sites, one located in the deeper central part of northernmost Baffin Bay and one in a separate trough closer to the Greenland coast. A revised chronology for the two records is established on the basis of 15 previously published AMS 14C age determinations. A basal diamicton is overlain by laminated, fossil-free sediments. Our data from the early part of the fossiliferous record (12 300–11 300 cal. yr BP), which is also initially laminated, indicate extensive seasonal sea-ice cover and brine release. There is indication of a cooling event between 11 300 and 10 900 cal. yr BP, and maximum Atlantic Water influence occurred between 10 900 and 8200 cal. yr BP (no sediment recovery between 8200 and 7300 cal. yr BP). A gradual, but fluctuating, increase in sea-ice cover is seen after 7300 cal. yr BP. Sea-ice diatoms were particularly abundant in the central part of northernmost Baffin Bay, presumably due to the inflow of Polar waters from the Arctic Ocean, and less sea ice occurred at the near-coastal site, which was under continuous influence of the West Greenland Current. Our data from the deep, central part show a fluctuating degree of upwelling after c. 7300 cal. yr BP, culminating between 4000 and 3050 cal. yr BP. There was a gradual increase in the influence of cold bottom waters from the Arctic Ocean after about 3050 cal. yr BP, when agglutinated foraminifera became abundant. A superimposed short-term change in the sea-surface proxies is correlated with the Little Ice Age cooling.
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  • 30
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    In:  Biotechnology Journal, 3 (4). pp. 496-509.
    Publication Date: 2020-06-22
    Description: The genomes of most economically important microbial cells are already sequenced and proteomic technologies can be applied during various process development steps, starting with the selection and optimization of the functions of the industrial strains, application of the knowledge of cell function in response to the changes of production parameters, validation of the downstream processing, and thorough characterization of the final product. Unfortunately, there are only a few direct examples in the literature that present the optimization of the production process based on proteomics. In this review, we discuss the potential of this technology for the design of future bioprocesses and for optimization of existing ones.
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  • 31
    Publication Date: 2020-06-15
    Description: This paper presents a three‐dimensional (3D) seismic analysis of sediment remobilization and fluid migration in a 2000‐km2 area above the Gjallar Ridge located in the Vøring Basin, offshore Norway. Three distinct types of mounded structures have been identified as resulting from focused fluid/gas migration and associated mud remobilization and intrusion. Type A structures are gently mounded, and we infer that these structures formed because of in situ remobilization of Middle Eocene to Lower–Middle Oligocene fine‐grained sediments in response to fluid and minor sediment injection via deep‐seated normal faults. Type B structures comprise relatively steep‐sided mounds and are restricted to the pre‐Miocene interval. They are often located above narrow zones of discontinuous low‐amplitude reflections resembling gas chimneys. Some of the Type B structures are associated with stacked amplitude anomalies and possible mud volcanoes at the base Pleistocene indicating their long‐term significance as vertical fluid conduits. Type C structures comprise discrete mound features that seem to jack up the Top Palaeocene (Top Brygge) horizon. These are similar to hydrothermal mounds found elsewhere on the Norwegian Margin and associated with igneous sill intrusion during North Atlantic breakup. This study highlights the utility of 3D seismic data for mapping of fluid and sediment mobilization through time over large basinal areas.
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  • 32
    Publication Date: 2020-03-19
    Description: This paper updates the analysis by Osborn et al. of trends in the contribution of heavy events to precipitation in the UK. We spatially extended the previous analysis of 110 rain gauges to a set of 689 rain gauges covering almost the whole UK, and updated the results to November 2006. For each station and season, we calculated ten time series of the contribution of ten precipitation amount categories to the total seasonal precipitation. A principal component analysis of post-1961 trends of all categories and stations is consistent with earlier results, namely, widespread shifts towards greater contribution from heavier precipitation categories during winter, and towards light and moderate categories during summer. Regional and UK average time series of the contribution from the category consisting of the heaviest events indicate that the increased winter intensity was sustained during the most recent ten years, but the trend did not continue at the rate reported previously for 1961–1995. For summer, the decreasing contribution from the heaviest rainfall category reported for 1961–1995 underwent a reversal during the most recent decade, returning towards the 1961–1995 reference level of intensity. Confidence intervals for these regional and UK average time series were estimated by a bootstrap approach and indicate that the sparser observations from the first half of the 20th century are still sufficient to estimate UK average change. These longer records support the existence of a long-term increase in winter precipitation intensity, and similar trends have now also become evident in spring and (to a lesser extent) autumn. The summer rainfall intensity has exhibited changes that are more consistent with inter-decadal variability than any overall trend. Copyright © 2008 Royal Meteorological Society
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  • 33
    Publication Date: 2020-01-29
    Description: We collated aerial census data collected during the late 1980s to early 2000s for large herbivore populations in eight large census zones in Tanzania. Of the ungulate populations that showed significant changes in densities at the start versus end of this decade, most declined; very few populations increased significantly. Thomson's gazelle, Grant's gazelle, hartebeest, reedbuck, roan antelope, sable antelope, warthog and zebra, for example, declined in over 50% of the zones where they were surveyed. Interestingly, small-bodied species fared particularly poorly in many census zones, whereas elephant and giraffe generally fared well across the country. Most populations of all herbivores declined in some portions of the country (e.g. Burigi-Biharamulo, Katavi, Greater Ruaha and Tarangire census zones). These surveys suggest that, even in a country renowned for its protected areas and conservation commitment, some large herbivore populations need more conservation attention in order to remain stable.
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  • 34
    Publication Date: 2019-11-11
    Description: The capability of Time of Flight–Secondary Ion Mass Spectrometry (ToF-SIMS) of analysing molecular archaeal biomarkers in geobiological samples was tested and demonstrated. Using a bismuth cluster primary ion source, isopranyl glycerol di- and tetraether core lipids were detected in small amounts of total organic extracts from methanotrophic microbial mats, simultaneously and without further chemical treatment and chromatographic separation. ToF-SIMS was also employed to track the distribution of fossilized ether lipids in a massive carbonate (aragonite) microbialite that precipitated as a result of the microbial anaerobic oxidation of methane. An unambiguous signal was obtained when analysing a freshly broken rock surface (base of a microdrill core). Though some limitation occurred due to µm-topographical effects (sample roughness), it was possible to display the abundance of high molecular weight (C86) of tetraethers exposed in particular regions of the rock surface. ‘Molecular mapping’ revealed that a part of these molecules was encased within the rock fabric in a cluster-like distribution that might trace the arrangement of the calcifying microbial colonies in the once active mat system. The results reveal promising perspectives of ToF-SIMS for (i) the quasi-nondestructive analysis of lipids in extremely small geobiological samples at low concentrations; (ii) resolving the spatial distribution of these compounds on a µm2- to cm2-scale; and (iii) the more exact assignment of lipid biomarkers to their biological source.
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  • 35
    Publication Date: 2019-09-23
    Description: Large volcanic edifices are often shaped by the coalescence of adjacent volcanoes as well as intrusive rift zones and gravitational spreading. To better understand the structure of such volcanoes we designed analogue experiments simulating gravitational spreading of an edifice made by overlapping cones of different age, and examined the formation of rift zones. The results allow distinction of two main rift geometries. (i) Spreading edifices of similar age that partly overlap, tend to develop a rift zone approximately perpendicular to the boundary of both volcanoes. Such a rift zone causes two volcanoes to grow together and form an elongated topographic ridge. (ii) Partly overlapping volcanoes of different age are spreading at different rates and thus form a rift zone parallel to the boundary of both volcanoes. Such a rift zone causes two volcanoes to structurally separate. The results are widely applicable for large volcanoes subject to rifting and flank spreading, which we demonstrate for Réunion Island and for southern Hawaii.
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  • 36
    Publication Date: 2019-09-23
    Description: The soxB gene encodes the SoxB component of the periplasmic thiosulfate-oxidizing Sox enzyme complex, which has been proposed to be widespread among the various phylogenetic groups of sulfur-oxidizing bacteria (SOB) that convert thiosulfate to sulfate with and without the formation of sulfur globules as intermediate. Indeed, the comprehensive genetic and genomic analyses presented in the present study identified the soxB gene in 121 phylogenetically and physiologically divergent SOB, including several species for which thiosulfate utilization has not been reported yet. In first support of the previously postulated general involvement of components of the Sox enzyme complex in the thiosulfate oxidation process of sulfur-storing SOB, the soxB gene was detected in all investigated photo- and chemotrophic species that form sulfur globules during thiosulfate oxidation (Chromatiaceae, Chlorobiaceae, Ectothiorhodospiraceae, Thiothrix, Beggiatoa, Thiobacillus, invertebrate symbionts and free-living relatives). The SoxB phylogeny reflected the major 16S rRNA gene-based phylogenetic lineages of the investigated SOB, although topological discrepancies indicated several events of lateral soxB gene transfer among the SOB, e.g. its independent acquisition by the anaerobic anoxygenic phototrophic lineages from different chemotrophic donor lineages. A putative scenario for the proteobacterial origin and evolution of the Sox enzyme system in SOB is presented considering the phylogenetic, genomic (sox gene cluster composition) and geochemical data.
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  • 37
    Publication Date: 2019-09-23
    Description: 1. Tracer experiments with two diatoms labelled with 13C (Nitzschia palea) and 15N (Fragilaria crotonensis), were conducted to investigate feeding selectivity and interspecific competition between the grazers Asellus aquaticus (Isopoda, Crustacea) and Potamopyrgus antipodarum (Hydrobiidae, Gastropoda). Conventional methods, such as cell counts and estimated biovolume, were used first to detect feeding preferences within the different grazer treatments. 2. The results revealed a significant decline in algal biovolume in all grazer treatments and no indications of active selectivity were observed. In contrast to conventional methods, measurements based on isotope signatures showed strong differences in tracer uptake, thus indicating different degrees of assimilation and digestion by the two grazers. 3. The selectivity index Q, which provides information on the uptake ratio of 13C to 15N, showed a significant time effect for both grazer species and a significant difference between single- and mixed-grazer treatments for P. antipodarum. Thus, this technique enabled the direct quantification of the uptake by grazers and, therefore, served as an ideal tool for the detection of passive selectivity. 4. Our results indicate a shift in feeding preferences related to between-species competition and a potential divergence of trophic niches when species coexist.
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  • 38
    Publication Date: 2019-09-23
    Description: Seismic and volcanic activities in Central Java, Indonesia, the area of interest of this study, are directly or indirectly related to the subduction of the Indo-Australian plate. In the framework of the MERapi AMphibious EXperiments (MERAMEX), a network consisting of about 130 seismographic stations was installed onshore and offshore in Central Java and operated for more than 150 days. In addition, 3-D active seismic experiments were carried out offshore. In this paper, we present the results of processing combined active and passive seismic data, which contain traveltimes from 292 local earthquakes and additional airgun shots along three offshore profiles. The inversion was performed using the updated LOTOS-06 code that allows processing for active and passive source data. The joint inversion of the active and passive data set considerably improves the resolution of the upper crust, especially in the offshore area in comparison to only passive data. The inversion results are verified using a series of synthetic tests. The resulting images showan exceptionally strong low-velocity anomaly (−30 per cent) in the backarc crust northward of the active volcanoes. In the upper mantle beneath the volcanoes, we observe a low-velocity anomaly inclined towards the slab, which probably reflects the paths of fluids and partially melted materials in the mantle wedge. The crust in the forearc appears to be strongly heterogeneous. The onshore part consists of two high-velocity blocks separated by a narrow low-velocity anomaly, which can be interpreted as a weakened contact zone between two rigid crustal bodies. The recent Java Mw = 6.3 earthquake (2006/05/26-UTC) occurred at the lower edge of this zone. Its focal strike slip mechanism is consistent with the orientation of this contact.
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  • 39
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    In:  Geophysical Journal International, 178 (2). pp. 742-752.
    Publication Date: 2019-09-23
    Description: We examine micro-earthquake records from a dense temporary array of ocean bottom seismometers (OBS) and hydrophones that has been installed from September to November 2005 at the trench outer rise offshore Nicaragua. Approximately 1.5 locatable earthquakes per day within the array of 110 × 120 km show the high seismic activity in this region. Seismicity is restricted to the upper ∼15 km of the mantle and hence where temperatures reach 350–400 °C, which is smaller than values observed for large mantle intraplate events (650 °C). Determination of moment tensor solutions suggest a change of the stress region from tensional in the upper layers of the oceanic plate to compressional beneath. The neutral plane between both regimes is located at ∼6–9 km beneath Moho and thus very shallow. Fluids, which are thought to travel through the tensional fault system into the upper mantle, may not be able to penetrate any deeper. The earthquake catalogue, which seems to be complete for magnitudes above Mw = 1.6–1.8, suggests a strong change of the lithospheric rheology when approaching the trench. And b-factors, that is the ratio between small and large earthquakes increase significantly in the closest 20 km to the trench axis, implying that the crust and upper mantle is massively weakened and hence ruptures more frequently but under less release of stress. We explain this with a partly serpentinized upper mantle.
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  • 40
    Publication Date: 2019-09-23
    Description: Laboratory and numerical experiments and boundary layer analysis of the entrainment of buoyant asthenosphere by subducting oceanic lithosphere implies that slab entrainment is likely to be relatively inefficient at removing a buoyant and lower viscosity asthenosphere layer. Asthenosphere would instead be mostly removed by accretion into and eventual subduction of the overlying oceanic lithosphere. The lower (hot) side of a subducting slab entrains by the formation of a ∼10–30 km-thick downdragged layer, whose thickness depends upon the subduction rate and the density contrast and viscosity of the asthenosphere, while the upper (cold) side of the slab may entrain as much by thermal 'freezing' onto the slab as by mechanical downdragging. This analysis also implies that proper treatment of slab entrainment in future numerical mantle flow experiments will require the resolution of ∼10–30 km-thick entrainment boundary layers.
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  • 41
    Publication Date: 2019-09-23
    Description: The local distribution of the bacterial community associated with the marine sponge Tethya aurantium Pallas 1766 was studied. Distinct bacterial communities were found to inhabit the endosome and cortex. Clear differences in the associated bacterial populations were demonstrated by denaturing gradient gel electrophoresis (DGGE) and analysis of 16S rRNA gene clone libraries. Specifically associated phylotypes were identified for both regions: a new phylotype of Flexibacteria was recovered only from the sponge cortex, while Synechococcus species were present mainly in the sponge endosome. Light conduction via radiate spicule bundles conceivably facilitates the unusual association of Cyanobacteria with the sponge endosome. Furthermore, a new monophyletic cluster of sponge-derived 16S rRNA gene sequences related to the Betaproteobacteria was identified using analysis of 16S rRNA gene clone libraries. Members of this cluster were specifically associated with both cortex and endosome of T. aurantium.
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  • 42
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    In:  Geophysical Journal International, 172 . pp. 240-251.
    Publication Date: 2019-09-23
    Description: Trench-outer rise earthquakes occur by reactivation or creation of normal faults caused as the oceanic lithosphere approaches a subduction zone and bends into the deep-sea trench. These faults may cut deep enough into the mantle to allow sea water to penetrate into the lithosphere, causing serpentinization. The amount of water carried into the mantle is linked to the maximum depth that the tensional faults cut into the lithosphere, which in turn is directly linked to the maximum focal depths of outer rise normal faulting earthquakes. We analysed teleseismic P and S waves of seven earthquakes from the trench-outer rise offshore of Central America using teleseismic waveform inversion of broad-band data. For the computation of Green's functions for waveform inversion, probabilistic earthquake locations were calculated. To study the rupture process, earthquake centroid depths and focal mechanisms for a sequence of subevents were calculated. Both, hypocentral depths from the relocation process and the estimated centroid depths from the waveform inversion show that all events occur at shallow depths (〈30 km). Furthermore, the locations of the subevents relative to each other suggest that fault planes for Mw∼ 6 are in the order of 50 km in length and only 5–10 km in width. Rupture generally propagates downdip and the focal mechanisms change for most events from normal faulting to strike-slip or oblique thrusting with time. The depth at which this mechanism change is observed may represent the depth of the nodal plane between tensional and compressional regions in the incoming plate.
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  • 43
    Publication Date: 2019-09-23
    Description: River discharge of Ob and Yenisei to the Kara Sea is highly variable on seasonal and interannual time scales. River water dominates the shallow bottom water near the river mouths, making it warmer and less saline but seasonally and interannually more changeable than bottom water on the deeper shelf. This hydrographic pattern shows up in measurements and modelling, and in stable isotope records (δ18 O, δ13 C) along the growth axis of bivalve shells and in multiple analyses of single benthic foraminiferal shells. Average isotope ratios increase, but sample-internal variability decreases with water depth and distance from river mouths. However, isotope records of bivalves and foraminifera of a sediment core from a former submarine channel of Yenisei River reveal a different pattern. The retreat of the river mouth from this site due to early Holocene sea level rise led to increasing average isotope values up core, but not to the expected decrease of the in-sample isotope variability. Southward advection of cold saline water along the palaeo-river channel probably obscured the hydrographic variability during the early Holocene. Later, when sediment filled the channel, the hydrographic variability at the core location remained low, because the shallowing proceeded synchronously with the retreat of the river mouth.
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  • 44
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    In:  In: Microbial Ecology of the Oceans. Wiley, Hoboken, NJ, USA, pp. 159-205. 2. ed. ISBN 9780470043448
    Publication Date: 2019-09-23
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  • 45
    Publication Date: 2019-09-23
    Description: Most natural local systems exchange organisms with a regional pool of species through migration and dispersal. Such metacommunity processes of interconnected multispecies assemblages are likely to affect local dynamics of both species and processes. We present results from an artificial marine outdoor rock pool system in which we investigated the factors of (1) local grazer richness and composition, and (2) connectivity of local patches to a regional species pool, and their effects on algal biomass. Local species richness of six grazers was manipulated in both open and closed pools, which were embedded in a regional species pool containing all six grazers. Grazer richness showed significant net biodiversity effects on grazing in the closed, but not in the open, system. Grazer composition, on the other hand, showed significant effects on grazing in both open and closed systems, depending on which species were initially present. The two most efficient grazers were able to compensate for less efficient grazers in species mixtures, hence ensuring the function of grazing. The efficiency of top-down control of algal biomass in open systems thus depends on which particular species are lost. Further, differences in grazing between the open and closed system changed over time due to temporal dynamics in grazer composition. The results emphasize the importance of including system connectivity in experimental designs to allow an extrapolation of biodiversity ecosystem-functioning relationships to natural systems.
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  • 46
    Publication Date: 2019-09-23
    Description: The 1992 Nicaragua earthquake was a ‘tsunami earthquake’, which generated tsunamis disproportionately large for its surface wave magnitude Ms = 7.2. Seismological studies and tsunami simulation indicated that the event was a slow earthquake, which occurred on the plate boundary between the subducting Cocos plate and the overriding Caribbean plate. We present a finite element model that enables us to estimate for the first time the temperature and inferred frictional conditions in the rupture area of a tsunami earthquake. Direct and indirect observations are used to constrain all model parameters, and surface heat-flux measurements provide independent information to verify the model results. Furthermore, we used a genetic algorithm to perform a sensitivity analysis of all model parameters and to define the spatial range of thermally defined updip limit of the seismogenic zone. The earthquake nucleated in the seismogenic zone at temperatures of ∼150 °C and propagated updip towards the trench axis. The centroid or centre of mass of moment release was located in a region characterized by temperatures of ∼50 °C. Thus, the rupture propagated through a region where plate motion is normally accommodated by aseismic creep. Our observations support a model in which tsunami earthquakes nucleate in the seismogenic zone near its updip limit. However, in such an environment coupled asperities are perhaps too small to cause large earthquakes. Seamounts, however, are abundant on the incoming Cocos plate. Therefore, in addition to temperature-dependent metamorphic induration of sediments, increased normal stress by seamount subduction may contribute to accumulate stress sufficiently large to release enough energy near the updip limit of the seismogenic zone to promote dynamic slip along a normally aseismic décollement all way to the ocean.
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  • 47
    Publication Date: 2019-09-23
    Description: Disturbance and productivity are often cited as the main factors determining temporal and spatial patterns in species distribution and the diversity of communities. A field experiment was conducted to test the role of these factors in the structuring of early successional fouling communities in a nutrient limited system at the south coast of Madeira Island. Macro-benthic sessile communities, established on artificial settlement substrata, were manipulated and surveyed over a 9-week period. We applied mechanical disturbances of four different frequencies crossed with three levels of inorganic nutrient enrichment. Fertilization enhanced community diversity by favouring the establishment and growth of macroalgae. Disturbance reduced diversity by eliminating species – but only at the highest nutrient level. This is explained by a multiple-stressor model; species most sensitive to nutrient deficiency (only present in the highest enrichment treatment) were simultaneously the most sensitive to disturbance
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  • 48
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    In:  Plant Cell and Environment, 29 (5). pp. 810-822.
    Publication Date: 2019-09-23
    Description: Carbon acquisition was investigated in three marine bloom-forming dinoflagellates – Prorocentrum minimum, Heterocapsa triquetra and Ceratium lineatum. In vivo activities of extracellular and intracellular carbonic anhydrase (CA), photosynthetic O2 evolution, CO2 and HCO3– uptake rates were measured by membrane inlet mass spectrometry (MIMS) in cells acclimated to low pH (8.0) and high pH (8.5 or 9.1). A second approach used short-term 14C-disequilibrium incubations to estimate the carbon source utilized by the cells. All three species showed negligible extracellular CA (eCA) activity in cells acclimated to low pH and only slightly higher activity when acclimated to high pH. Intracellular CA (iCA) activity was present in all three species, but it increased only in P. minimum with increasing pH. Half-saturation concentrations (K1/2) for photosynthetic O2 evolution were low compared to ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco) kinetics. Moreover, apparent affinities for inorganic carbon (Ci) increased with increasing pH in the acclimation, indicating the operation of an efficient CO2 concentration mechanism (CCM) in these dinoflagellates. Rates of CO2 uptake were comparably low and could not support the observed rates of photosynthesis. Consequently, rates of HCO3– uptake were high in the investigated species, contributing more than 80% of the photosynthetic carbon fixation. The affinity for HCO3– and maximum uptake rates increased under higher pH. The strong preference for HCO3– was also confirmed by the 14C-disequilibrium technique. Modes of carbon acquisition were consistent with the 13C-fractionation pattern observed and indicated a strong species-specific difference in leakage. These results suggest that photosynthesis in marine dinoflagellates is not limited by Ci even at high pH, which may occur during red tides in coastal waters.
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  • 49
    Publication Date: 2019-09-13
    Description: The diversification of the teleost suborder Notothenioidei (Perciformes) in Antarctic waters provides one of the most striking examples of a marine adaptive radiation. Along with a number of adaptations to the cold environment, such as the evolution of antifreeze glycoproteins, notothenioids diversified into eight families and at least 130 species. Here, we investigate the genetic population structure of the humped rockcod (Gobionotothen gibberifrons), a benthic notothenioid fish. Six populations were sampled at different locations around the Scotia Sea, comprising a large part of the species’ distribution range (N = 165). Our analyses based on mitochondrial DNA sequence data (352 bp) and eight microsatellite markers reveal a lack of genetic structuring over large geographic distances (ΦST £ 0.058, FST £ 0.005, P values nonsignificant). In order to test whether this was due to passive larval dispersal, we used GPS-tracked drifter trajectories, which approximate movement of passive surface particles with ocean currents. The drifter data indicate that the Antarctic Circumpolar Current (ACC) connects the sampling locations in one direction only (west–east), and that passive transport is possible within the 4-month larval period of G. gibberifrons. Indeed, when applying the isolation-with-migration model in IMA, strong unidirectional west-east migration rates are detected in the humped rockcod. This leads us to conclude that, in G. gibberifrons, genetic differentiation is prevented by gene flow via larval dispersal with the ACC.
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  • 50
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    International Association of Geoanalysts | Wiley
    In:  Geostandards and Geoanalytical Research, 32 (2). pp. 27-32.
    Publication Date: 2019-08-08
    Description: The calcium isotopic composition of NIST SRM 915b and 1486 provided by the National Institute of Standards and Technology was analysed. The δ44/40Ca values of the two reference materials relative to NIST SRM 915a were: NIST SRM 915b =+0.72 ± 0.04‰ and NIST SRM 1486 =−1.01 ± 0.02‰. NIST SRM 1486 did not require any chemical separation prior to measurement. La composition isotopique du calcium de NIST SRM 915b et 1486, fournis par l'Institut National des Standards et de la Technologie (NIST), a été analysée. Les valeurs du δ44/40Ca obtenues sur ces deux matériaux de référence, relativement au NIST SRM 915a sont: NIST SRM 915b =+0.72 ± 0.04‰ et NIST SRM 1486 =−1.01 ± 0.02‰. Le NIST SRM 1486 n'a nécessité aucune séparation chimique avant analyse.
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  • 51
    Publication Date: 2019-08-08
    Description: We report delta Ca-44/40((SRM 915a)) values for eight fused MPI-DING glasses and the respective original powders, six USGS igneous rock reference materials, the U-Th disequilibria reference material TML, IAEA-CO1 (Carrara marble) and several igneous rocks (komatiites and carbonatites). Sample selection was guided by three considerations: (1) to address the need for information values on reference materials that are widely available in support of interlaboratory comparison studies; (2) support the development of in situ laser ablation and ion microprobe techniques, which require isotopically homogenous reference samples for ablation; and (3) provide Ca isotope values on a wider range of igneous and metamorphic rock types than is currently available in the scientific literature. Calcium isotope ratios were measured by thermal ionisation mass spectrometry in two laboratories (IFM-GEOMAR and Saskatchewan Isotope Laboratory) using Ca-43/Ca-48- and Ca-42/Ca-43-double spike techniques and reported relative to the calcium carbonate reference material NIST SRM 915a. The measurement uncertainty in both laboratories was better than 0.2 parts per thousand at the 95% confidence level. The impact of different preparation methods on the delta Ca-44/40((SRM 915a)) values was found to be negligible. Except for ML3-B, the original powders and the respective MPI-DING glasses showed identical delta Ca-44/40((SRM 915a)) values; therefore, possible variations in the Ca isotope compositions resulting from the fusion process are excluded. Individual analyses of different glass fragments indicated that the glasses are well homogenised on the mm scale with respect to Ca. The range of delta Ca-44/40((SRM 915a)) values in the igneous rocks studied was larger than previously observed, mostly owing to the inclusion of ultramafic rocks from ophiolite sections. In particular, the dunite DTS-1 (1.49 +/- 0.06 parts per thousand) and the peridotite PCC-1 (1.14 +/- 0.07 parts per thousand) are enriched in Ca-44 relative to volcanic rocks (0.8 +/- 0.1 parts per thousand). The Carrara marble (1.32 +/- 0.06 parts per thousand) was also found to be enriched in Ca-44 relative to the values of assumed precursor carbonates (〈 0.8 parts per thousand). These findings suggest that the isotopes of Ca are susceptible to fractionation at high temperatures by, as yet, unidentified igneous and metamorphic processes.
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  • 52
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    Wiley
    In:  International Review of Hydrobiology, 93 (4-5). pp. 479-488.
    Publication Date: 2019-07-25
    Description: It is a well accepted fact that nutrient limitation of plants affects the growth and survival of herbivores, generally leading to lower performance of herbivores feeding on nutrient stressed plants. The effect of plants' growing conditions on predatory organisms, feeding one trophic level up, has been much less studied, and there is a general consensus that such effects would be small as herbivores often show relatively strong homeostasis with respect to their nutrient content. Here, we challenge this view, and show from several examples that despite the fact that herbivores buffer much of the variance in nutrient stoichiometry of their food, effects of growing conditions of the primary producers can travel up the food chain. We discuss the implications of these findings, and argue that phosphorus limitation of secondary consumers might be more common in marine than in freshwater systems.
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  • 53
    Publication Date: 2019-07-17
    Description: A continuous high-resolution record of digital images has been obtained from the North Greenland Ice Core Project (NorthGRIP) ice core (75.1N, 42.3W) in the depth interval from 1330 m to the bedrock at 3085 m. The ice core stratigraphy is clearly visible throughout the glacial period with the most frequent and brightest visible layers appearing during the coldest events. Down to a depth of 2600 m the horizontal layeringis very regular; below this depth, small irregularities in the layering start to appear, and below 2800 m the visual stratigraphy becomes more uncertain, perhaps because of penetration into climatically warmer ice. Comparison of the visual stratigraphy with high-resolution continuous records of chemical impurities and dust reveals a high degree of correlation, which indicates that the visible layers are caused by these impurities. Anew approach is used to automatically determine annual layer thicknesses from the visual stratigraphy record by carrying out a frequency analysis of the most prominent visible layers in the profile. The result gives strong support for the NorthGRIP timescale model.
    Repository Name: EPIC Alfred Wegener Institut
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  • 54
    Publication Date: 2019-02-27
    Description: Otolith increment width and larval fish data (length and weight) were used to develop an individual-based model (IBM) to describe daily resolved growth rates of North Sea herring (Clupea harengus) larvae (Autumn Spawners) caught during International Herring Larvae Surveys in the ICES area IVa from 1990 to 1998. The model combines sagittal otolith readings (core and individual increment measurements), larval standard length and weight data, and solves an over-determined set of linear system equations for all parameters using the method of least square residuals. The model consists of a matrix, which describes the increment width formation of 119 larvae, a vector containing their length/weight measurements, and a vector describing residuals. The solution vector yields age-dependent maximum somatic growth rates of herring larvae up to an age of 41 days with sizes ranging from 10 to 25 mm. The observed environmental temperature in which larvae dwelled was relatively uniform. Therefore, measured increment width was individually used to determine daily growth from any single larva in relation to their potential maximum growth under optimal feeding conditions. The results are discussed with respect to the spatial and temporal variability of larval occurrence. Finally, an analysis of error estimation of the larval growth characteristics is presented.
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  • 55
    Publication Date: 2019-02-27
    Description: A common elemental analyzer system connected to a temperature-controlled gas chromatography (GC) column and coupled to an isotope ratio mass spectrometer was improved to decrease the determination limit for a simultaneous stable isotope ratio measurement of nitrogen and carbon dioxide. The additional use of a special ashtray system to collect the combustion residuals permitted more time-efficient work. These modifications to the elemental analyzer allowed precise measurements to be made down to 1.5 µg nitrogen and 10 µg carbon for stable isotope analysis. Low system background values and an acceptable signal-to-noise ratio have made an additional blank correction for these low sample measurements unnecessary. We provide a precision of this stable isotope analysis for lowest amounts of 1.2–2 µg nitrogen with a standard deviation of ±0.496‰ (n = 27) and for 8.2–15 µg carbon with a standard deviation of ±0.257‰ (n = 31) across different sample runs under stipulated conditions. This application can be established in an automatic mode without cryofocusing procedures.
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  • 56
    Publication Date: 2019-02-27
    Description: A new methodology is presented to reconstruct migration pathways of individual fish inhabiting ecosystems with moderate-to-strong gradients in temperature or salinity. The method uses measurements of ambient pressure, temperature and salinity obtained from electronic data storage tags attached to individual fish and is particularly applicable in areas with negligible tides. We demonstrate the method with Baltic cod. Hydrographic fields obtained from hydrodynamic modelling were used as a geolocation database to identify daily positions of Baltic cod by comparison with the environmental data collected by the tags. Using randomly distributed individual parameter perturbations in the range of the instrument precision of the tag we simulated a cod migrating through the Baltic Sea. The distance between the prescribed and geolocated positions of this artificial cod was on average 2.9 ± 4.7 (SD) km. Subsequently, the method was used to reconstruct migration routes of 10 real cod tagged in the Bornholm Basin of the Baltic Sea in early spring 2003. Differences were compared between the tag data and the geolocation database. The uncertainty in geolocation at recapture day was on average 75 ± 23 (SD) km, as shown by comparison between geolocated position and recapture position.
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  • 57
    Publication Date: 2019-02-27
    Description: A high-performance liquid chromatographic method was developed for the simultaneous determination and pharmacokinetic studies of safflor yellow A, puerarin, 3′-methoxyl-puerarin, and puerarinapioside in the plasma and tissues of rats that had been administered with the traditional Chinese medicine (TCM) preparation Naodesheng via the caudal vein. Samples taken from rats were subjected to protein precipitation with acetone. Separation of these four compounds was accomplished on a Kromisil C18 stationary phase using a mobile phase of acetonitrile–0.1% phosphoric acid–tetrahydrofuran (8:92:2, v/v/v) at a flow-rate of 1.0 mL/min. The detection wavelength was set at 250 nm. The calibration curves of the four components were linear in the given concentration ranges. The intra- and inter-day precisions in plasma and tissues were less than 15% and the extraction recoveries were higher than 60%. The lower limits of quantitation of four components were low enough to determine the four components. These four components all exhibited kinetics that fitted a two-compartment model in rats. The elimination half-life was 1.19 h for safflor yellow A, 2.69 h for puerarin, 2.94 h for 3′-methoxyl-puerarin, and 0.87 h for puerarinapioside, respectively. Following administration of a single injection of Naodesheng, the concentration (C) of the four components in the tissues showed Ckidney 〉 Clung, Cliver 〉 Cspleen, Cstomach, Cheart, approximately. The method is a reliable tool for performing studies of safflor yellow A and three puerarin isoflavones in different biological material
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  • 58
    Publication Date: 2019-02-27
    Description: The management of Baltic sprat is challenged by highly variable recruitment success and hence large stock fluctuations. Recent studies have identified the larval and early juvenile life stages to be critical for the survival rate of a sprat year class. Although prey abundance was found to be linked to larval survival success, an analysis identifying the functional relationship and relative importance of other environmental factors is still missing. Sprat larval feeding was investigated in 2002 during three cruises, covering the main spawning time in the Bornholm Basin, Baltic Sea. The aim of the study was to identify the key environmental factors determining the feeding success of larval sprat taking their potential interactions explicitly into account. An extension of generalized additive models (GAMs) was adopted that allows the inclusion of interaction terms in a non-parametric regression model. The final model of sprat larval feeding success explained ∼80% of the variance in the data and was based on the following environmental factors: bottom depth, cubed wind speed as proxy for small-scale turbulence rates, degree of cloudiness as proxy for light conditions and prey density in combination with a feeding period–cloudiness interaction term. Our study demonstrates that the feeding success of sprat larvae in the Baltic Sea is controlled by a number of simultaneously acting key environmental factors
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  • 59
    Publication Date: 2019-01-24
    Description: The `plate tectonic mirror image' to the region of the Cocos and Nazca plates, which are currently being subducted beneath Central America, is preserved in the Central Pacific around 120°W just south of the equator. Cruise SO-180 investigated this remote area during project CENTRAL and acquired new magnetic and bathymetric data. A plate tectonic model for the ‘mirror image’ is presented based on the newly acquired as well as reprocessed existing data. Discordant magnetic anomaly patterns and bathymetric structures indicate at least two major reorganization events (19.5 and 14.7 Myr), which can be detected both in the Cocos-Nazca spreading system and in the East Pacific Rise. Irregularities in the anomaly pattern and curvilinear structures on the sea floor of the survey area are interpreted in terms of a fossil overlapping spreading centre at the location where the Farallon break-up originated.
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  • 60
    Publication Date: 2019-01-23
    Description: Summary: • Glomus intraradices is a widespread arbuscular mycorrhizal fungus (AMF), which has been found in an extremely broad range of habitats, indicating a high tolerance for environmental factors and a generalist life history strategy. Despite this ecological versatility, not much is known about the genetic diversity of this fungal species across different habitats or over large geographic scales. • A nested polymerase chain reaction (PCR) approach for the mitochondrial rRNA large subunit gene (mtLSU), distinguished different haplotypes among cultivated isolates of G. intraradices and within mycorrhizal root samples from the field. • From analysis of 16 isolates of this species originating from five continents, 12 mitochondrial haplotypes were distinguished. Five additional mtLSU haplotypes were detected in field‐collected mycorrhizal roots. Some introns in the mtLSU region appear to be stable over years of cultivation and are ancestral to the G. intraradices clade. • Genetic diversity within G. intraradices is substantially higher than previously thought, although some mtLSU haplotypes are widespread. A restriction fragment length polymorphism approach also was developed to distinguish mtLSU haplotypes without sequencing. Using this molecular tool, intraspecific genetic variation of an AMF species can be studied directly in field plants.
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  • 61
    Publication Date: 2019-01-21
    Description: At convergent margins, the structure of the subducting oceanic plate is one of the key factors controlling the morphology of the upper plate. We use high-resolution seafloor mapping and multichannel seismic reflection data along the accretionary Sumatra trench system to investigate the morphotectonic response of the upper plate to the subduction of lower plate fabric. Upper plate segmentation is reflected in varying modes of mass transfer. The deformation front in the southern Enggano segment is characterized by neotectonic formation of a broad and shallow fold-and-thrust belt consistent with the resumption of frontal sediment accretion in the wake of oceanic relief subduction. Conversely, surface erosion increasingly shapes the morphology of the lower slope and accretionary prism towards the north where significant oceanic relief is subducted. Subduction of the Investigator Fracture Zone and the fossil Wharton spreading centre in the Siberut segment exemplifies this. Such features also correlate with an irregularly trending deformation front suggesting active frontal erosion of the upper plate. Lower plate fabric extensively modulates upper plate morphology and the large-scale morphotectonic segmentation of the Sumatra trench system is linked to the subduction of reactivated fracture zones and aseismic ridges of the Wharton Basin. In general, increasing intensity of mass-wasting processes, from south to north, correlates with the extent of oversteepening of the lower slope (lower slope angle of 3.8 degrees in the south compared with 7.6 degrees in the north), probably in response to alternating phases of frontal accretion and sediment underthrusting. Accretionary mechanics thus pose a second-order factor in shaping upper plate morphology near the trench.
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  • 62
    Publication Date: 2019-01-21
    Description: We investigated the wound response of the commercially important red alga, Gracilaria chilensis, in order to obtain insight into its interaction with epiphytic pests. After wounding, the host releases free fatty acids as well as the hydroxylated eicosanoids, 8R-hydroxy eicosatetraenoic acid (8-HETE) and 7S,8R-dihydroxy eicosatetraenoic acid (7,8-di-HETE). While the release of free arachidonic acid and subsequent formation of 8-HETE is controlled by phospholipase A, 7,8-di-HETE production is independent of this lipase. This dihydroxylated fatty acid might be directly released from galactolipids. Physiologically relevant concentrations of oxylipins reduced spore settlement of Acrochaetium sp. (Rhodophyta, Acrochaetiaceae) and suppressed the development of hapteria in Ceramium rubrum (Rhodophyta, Ceramiaceae) when these model epiphytes were exposed to artificial surfaces that contained 8-HETE or 7,8-di-HETE. Thus, the immediate release of oxylipins can be seen as G. chilensis defence against epiphytes.
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  • 63
    Publication Date: 2019-01-10
    Description: The potential for nitrification in the Mediterranean sponge Aplysina aerophoba was assessed using a combined physiological and molecular approach. Nitrate excretion rates in whole sponges reached values of up to 344 nmol g(-1) dry weight (wt) h(-1) (unstimulated) and 1325 nmol g(-1) dry wt h(-1) (stimulated). Addition of nitrapyrin, a nitrification-specific inhibitor, effectively inhibited nitrate excretion. Ammonium was taken up by sponges in spring and excreted in fall, the sponges thus serving as either an ammonium sink or ammonium source. Nitrosospira cluster 1 and Crenarchaeota group I.1A 16S rRNA and amoA genes were recovered from A. aerophoba and other sponges from different world's oceans. The archaeal 16S rRNA genes formed a sponge-specific subcluster, indicating that their representatives are members of the stable microbial community of sponges. On the other hand, clustering was not evident for Nitrosospira rRNA genes which is consistent with their presence in sediment and seawater samples. The presence of both Nitrosospira cluster 1 and crenarchaeal group 1 phylotypes in sponge tissue was confirmed using fluorescently labelled 16S rRNA gene probes. This study contributes to an ongoing effort to link microbial diversity with metabolic functions in the phylogenetically diverse, elusive and so far uncultivated microbial communities of marine sponges.
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  • 64
    Publication Date: 2019-01-01
    Description: The Siberian Laptev Sea shelf contains submarine permafrost, which was formed by flooding of terrestrial permafrost with ocean water during the Holocene sea level rise. This flooding resulted in a warming of the permafrost to temperatures close below 0°C. The impact of these environmental changes on methanogenic communities and carbon dynamics in the permafrost was studied in a submarine permafrost core of the Siberian Laptev Sea shelf. Total organic carbon (TOC) content varied between 0.03% and 8.7% with highest values between 53 and 62 m depth below sea floor. In the same depth, maximum methane concentrations (284 nmol CH4 g−1) and lowest carbon isotope values of methane (−72.2‰ VPDB) were measured, latter indicating microbial formation of methane under in situ conditions. The archaeal community structure was assessed by a nested polymerase chain reaction (PCR) amplification for DGGE, followed by sequencing of reamplified bands. Submarine permafrost samples showed a different archaeal community than the nearby terrestrial permafrost. Samples with high methane concentrations were dominated by sequences affiliated rather to the methylotrophic genera Methanosarcina and Methanococcoides as well as to uncultured archaea. The presented results give the first insights into the archaeal community in submarine permafrost and the first evidence for their activity at in situ conditions.
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  • 65
    Publication Date: 2018-12-07
    Repository Name: EPIC Alfred Wegener Institut
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  • 66
    Publication Date: 2018-09-12
    Description: The nitrogen cycling of Lake Cadagno was investigated by using a combination of biogeochemical and molecular ecological techniques. In the upper oxic freshwater zone inorganic nitrogen concentrations were low (up to ∼3.4 μM nitrate at the base of the oxic zone), while in the lower anoxic zone there were high concentrations of ammonium (up to 40 μM). Between these zones, a narrow zone was characterized by no measurable inorganic nitrogen, but high microbial biomass (up to 4 × 107 cells ml−1). Incubation experiments with 15N-nitrite revealed nitrogen loss occurring in the chemocline through denitrification (∼3 nM N h−1). At the same depth, incubations experiments with 15N2- and 13CDIC-labelled bicarbonate, indicated substantial N2 fixation (31.7–42.1 pM h−1) and inorganic carbon assimilation (40–85 nM h−1). Catalysed reporter deposition fluorescence in situ hybridization (CARD-FISH) and sequencing of 16S rRNA genes showed that the microbial community at the chemocline was dominated by the phototrophic green sulfur bacterium Chlorobium clathratiforme. Phylogenetic analyses of the nifH genes expressed as mRNA revealed a high diversity of N2 fixers, with the highest expression levels right at the chemocline. The majority of N2 fixers were related to Chlorobium tepidum/C. phaeobacteroides. By using Halogen In Situ Hybridization-Secondary Ion Mass Spectroscopy (HISH-SIMS), we could for the first time directly link Chlorobium to N2 fixation in the environment. Moreover, our results show that N2 fixation could partly compensate for the N loss and that both processes occur at the same locale at the same time as suggested for the ancient Ocean.
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  • 67
    Publication Date: 2018-07-18
    Description: The ultramafic-hosted Logatchev hydrothermal field (LHF) on the Mid-Atlantic Ridge is characterized by high hydrogen and methane contents in the subseafloor, which support a specialized microbial community of phylogenetically diverse, hydrogen-oxidizing chemolithoautotrophs. We compared the prokaryotic communities of three sites located in the LHF and encountered a predominance of archaeal sequences affiliated with methanogenic Methanococcales at all three. However, the bacterial composition varied in accordance with differences in fluid chemistry between the three sites investigated. An increase in hydrogen seemed to coincide with the diversification of hydrogen-oxidizing bacteria. This might indicate that the host rock indirectly selects this specific group of bacteria. However, next to hydrogen availability further factors are evident (e.g. mixing of hot reduced hydrothermal fluids with cold oxygenated seawater), which have a significant impact on the distribution of microorganisms
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  • 68
    Publication Date: 2018-07-18
    Description: This study examines the representativeness of low-temperature hydrothermal fluid samples with respect to their chemical and microbiological characteristics. Within this scope, we investigated short-term temporal chemical and microbial variability of the hydrothermal fluids. For this purpose we collected three fluid samples consecutively from the same spot at the Clueless field near 5 degrees S on the southern Mid-Atlantic Ridge over a period of 50 min. During sampling, the temperature was monitored online. We measured fluid chemical parameters, characterized microbial community compositions and used statistical analyses to determine significant differences between the samples. Overall, the three fluid samples are more closely related to each other than to any other tested habitat. Therefore, on a broad scale, the three collected fluid samples can be regarded as habitat representatives. However, small differences are apparent between all samples. One of the Clueless samples even displayed significant differences (P-value 〈 0.01) to the other two Clueless samples. Our data suggest that the observed variations in fluid chemical and microbial compositions are not reflecting sampling artefacts but are related to short-term fluid variability due to dynamic subseafloor fluid mixing. Recorded temporal changes in fact reflect spatial heterogeneity found in the subsurface as the fluid flows through distinctive pathways. While conservative elements (Cl, Si, Na and K) indicate variable degrees of fluid-seawater mixing, reactive components, including Fe(II), O(2) and H(2)S, show that chemical and microbial reactions within the mixing zone further modify the emanating fluids on short-time scales. Fluids entrain microorganisms, which modify the chemical microenvironment within the subsurface biotopes. This is the first study focusing on short-term microbial variability linked to chemical changes in hydrothermal fluids.
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  • 69
    Publication Date: 2018-07-16
    Description: Isostatic considerations exhibit differences between the northern, central and southern parts of the Pacific–Australian plate collision in South Island, New Zealand. In the northern part mean elevations are moderate and the gravity low is small; the central part contains the highest elevations, and gravity and elevations correspond to each other relatively well; and in the southern part the gravity low is strongest whereas the mean elevations are moderate again. These differences indicate changes in the character of the isostatic compensation and are explained by increased thickening and widening of the crustal root from north to south, and also by the long wavelength gravity response to a mantle density anomaly that increases towards the south. A simple 3‐D gravity model is derived that includes the detailed crustal structures from the South Island GeopHysical Transect (SIGHT) experiment as well as a high‐density anomaly in the mantle inferred from teleseismic data. The model indicates that cold and, therefore, dense upper mantle material penetrates the asthenosphere to a greater extent in the south, similar to the behaviour of an apparently highly ductile lower crust. As plate reconstruction suggests more lithospheric shortening in the north, our model corresponds to lithospheric material escaping laterally to the south, almost perpendicular to the compression caused by lithospheric shortening of the mantle. Therefore, in addition to the prevailing mantle shear in New Zealand, there may also be a component of extrusional mantle creep beneath the Southern Alps orogen, which could have caused some of the observed large seismic anisotropy in this region. We may have also found evidence for submerged Eocene–Miocene oceanic lithosphere beneath the southeastern part of South Island that has been unaccounted for after plate reconstruction.
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  • 70
    Publication Date: 2018-07-16
    Description: A bottom simulating reflector (BSR), which marks the base of the gas hydrate stability zone, has been detected for the first time in seismic data of the Black Sea. The survey area is in the northwestern Black Sea at 44°–45°N and 31.5°–32.5°E. In this paper, seismic wide-angle ocean bottom hydrophone (OBH) and ocean bottom seismometer (OBS) data are investigated with the goal to quantify the gas hydrate and free gas saturation in the sediment. An image of the subsurface is computed from wide-angle data by using Kirchhoff depth migration. The image shows the BSR at 205–270 m depth below the seafloor and six to eight discrete layer boundaries between the seafloor and the BSR. The top of the hydrate layer and the bottom of the gas layer cannot be identified by seismic reflection signals. An analysis of traveltimes and reflection amplitudes leads to 1-D P-wave velocity–depth and density–depth models. An average S-wave velocity of 160 m s−1 between the seafloor and the BSR is determined from the traveltime of the P to S converted wave. The normal incidence PP reflection coefficient at the BSR is −0.11, where the P-wave velocity decreases from 1840 to 1475 m s−1. Velocities and density are used to compute the porosity and the system bulk modulus as a function of depth. The Gassmann equation for porous media is used to derive explicit formulae for the gas hydrate and free gas saturation, which depend on porosity and on the bulk moduli of the dry and saturated sediment. A gas hydrate saturation–depth profile is obtained, which shows that there is 38 ± 10 per cent hydrate in the pore space at the BSR depth, where the porosity is 57 per cent (OBS 24). This value is derived for the case that the gas hydrate does not cement the sediment grains, a model that is supported by the low S-wave velocities. There is 0.9 or 0.1 per cent free gas in the sediment below the BSR, depending on the model for the gas distribution in the sediment. The free gas layer may be more than 100 m thick as a result of a zone of enhanced reflectivity, which can be identified in the subsurface image.
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  • 71
    facet.materialart.
    Unknown
    Wiley
    In:  Geophysical Journal International, 161 (3). pp. 763-788.
    Publication Date: 2018-07-16
    Description: The Galápagos volcanic province (GVP) includes several aseismic ridges resulting from the interaction between the Galápagos hotspot (GHS) and the Cocos–Nazca spreading centre (CNSC). The most prominent are the Cocos, Carnegie and Malpelo ridges. In this work, we investigate the seismic structure of the Carnegie ridge along two profiles acquired during the South American Lithospheric Transects Across Volcanic Ridges (SALIERI) 2001 experiment. Maximum crustal thickness is ∼19 km in the central Carnegie profile, located at ∼85°W over a 19–20 Myr old oceanic crust, and only ∼13 km in the eastern Carnegie profile, located at ∼82°W over a 11–12 Myr old oceanic crust. The crustal velocity models are subsequently compared with those obtained in a previous work along three other profiles over the Cocos and Malpelo ridges, two of which are located at the conjugate positions of the Carnegie ones. Oceanic layer 2 thickness is quite uniform along the five profiles regardless of the total crustal thickness variations, hence crustal thickening is mainly accommodated by layer 3. Lower crustal velocities are systematically lower where the crust is thicker, thus contrary to what would be expected from melting of a hotter than normal mantle. The velocity-derived crustal density models account for the gravity and depth anomalies considering uniform and normal mantle densities (3300 kg m−3), which confirms that velocity models are consistent with gravity and topography data, and indicates that the ridges are isostatically compensated at the base of the crust. Finally, a two-dimensional (2-D) steady-state mantle melting model is developed and used to illustrate that the crust of the ridges does not seem to be the product of anomalous mantle temperatures, even if hydrous melting coupled with vigorous subsolidus upwelling is considered in the model. In contrast, we show that upwelling of a normal temperature but fertile mantle source that may result from recycling of oceanic crust prior to melting, accounts more easily for the estimated seismic structure as well as for isotopic, trace element and major element patterns of the GVP basalts.
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  • 72
    Publication Date: 2018-07-16
    Description: The subduction plate interface along the Nicoya Peninsula, Costa Rica, generates damaging large (Mw 〉 7.5) earthquakes. We present hypocenters and 3-D seismic velocity models (VP and VP/VS) calculated using simultaneous inversion of P- and S-wave arrival time data recorded from small magnitude, local earthquakes to elucidate seismogenic zone structure. In this region, interseismic cycle microseismicity does not uniquely define the potential rupture extent of large earthquakes. Plate interface microseismicity extends from 12 to 26 and from 17 to 28 km below sea level beneath the southern and northern Nicoya Peninsula, respectively. Microseismicity offset across the plate suture of East Pacific Rise-derived and Cocos-Nazca Spreading Center-derived oceanic lithosphere is ∼5 km, revising earlier estimates suggesting ∼10 km of offset. Interplate seismicity begins downdip of increased locking along the plate interface imaged using GPS and a region of low VP along the plate interface. The downdip edge of plate interface microseismicity occurs updip of the oceanic slab and continental Moho intersection, possibly due to the onset of ductile behaviour. Slow forearc mantle wedge P-wave velocities suggest 20–30 per cent serpentinization across the Nicoya Peninsula region while calculated VP/VS values suggest 0–10 per cent serpentinization. Interpretation of VP/VS resolution at depth is complicated however due to ray path distribution. We posit that the forearc mantle wedge is regionally serpentinized but may still be able to sustain rupture during the largest seismogenic zone earthquakes.
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  • 73
    Publication Date: 2018-07-13
    Description: Several trench-outer rise settings in subduction zones worldwide are characterized by a high degree of alteration, fracturing and hydration. These processes are induced by bending-related faulting in the upper part of the oceanic plate prior to its subduction. Mapping of P- and S-wave velocity structures in this complex tectonic setting provides crucial information for understanding the evolution of the incoming oceanic lithosphere, and serves as a baseline for comparison with seismic measurements elsewhere. Active source seismic investigations at the outer rise off Southern Central Chile (∼43°S) were carried out in order to study the seismic structure of the oceanic Nazca Plate. Seismic wide-angle data were used to derive 2-D velocity models of two seismic profiles located seaward of the trench axis on 14.5 Ma old crust; P01a approximately parallel to the direction of spreading and P03 approximately parallel to the spreading ridge and trench axes. We determined P- and S-velocity models using 2-D traveltime tomography. We found that the Poisson's ratio in the upper crust (layer 2) ranges between ∼0.33 at the top of the crust to ∼0.28 at the layer 2/3 interface, while in the lowermost crust and uppermost mantle it reaches values of ∼0.26 and ∼0.29, respectively. These features can be explained by an oceanic crust significantly weathered, altered and fractured. Relative high Poisson's ratios in the uppermost mantle may be likely related to partially hydrated mantle and hence serpentinization. Thus, the seismic structure of the oceanic lithosphere at the Southern Central Chile outer rise exhibits notable differences from the classic ophiolite seismic model (‘normal’ oceanic crust). These differences are primarily attributed to fracturing and hydration of the entire ocean crust, which are direct consequences of strong bending-related faulting at the outer rise. On the other hand, the comparison of the uppermost mantle P-wave velocities at the crossing point between the perpendicular profiles (∼90 km oceanward from the trench axis) reveals a low degree of Pn anisotropy (〈2 per cent).
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  • 74
    Publication Date: 2018-07-13
    Description: Fluids are suspected to play a major role in the nucleation and rupture propagation of earthquakes. In Chile, seismological data were previously interpreted to indicate that fluids captured in the fault zone are released periodically during large underthrust earthquakes, leading to post-seismic fluid flow. In central Chile, heat flow derived from the presence of a bottom simulating reflector (BSR) show a smooth trend across the margin. BSR-derived data are in excellent agreement with thermal subduction zone models. Over the young accretionary prism, both BSR-derived and measured surface heat flow support a common trend. Landwards of the backstop, however, measured heat flow triples over a distance of 20–30 km, producing a profound discrepancy to the BSR-derived data. We suggest that this disparity is related to transient flow of warm fluids through the gas hydrate stability zone possibly caused by fluids released after large underthrust earthquakes. Such flow events may inherently affect the distribution of solid gas hydrates between the seafloor and the BSR.
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  • 75
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    Wiley
    In:  Geophysical Journal International, 168 (2). pp. 551-570.
    Publication Date: 2018-07-13
    Description: We determine the 3-D in situ shear-wave velocities of shallow-water marine sediments by extending the method of surface wave tomography to Scholte-wave records acquired in shallow waters. Scholte waves are excited by air-gun shots in the water column and recorded at the seafloor by ocean-bottom seismometers as well as buried geophones. Our new method comprises three steps: (1) We determine local phase-slowness values from slowness-frequency spectra calculated by a local wavefield transformation of common-receiver gathers. Areal phase-slowness maps for each frequency used as reference in the following step are obtained by interpolating the values derived from the local spectra. (2) We infer slowness residuals to those reference slowness maps by a tomographic inversion of the phase traveltimes of fundamental Scholte-wave mode. (3) The phase-slowness maps together with the residuals at different frequencies define a local dispersion curve at every location of the investigation area. From those dispersion curves we determine a model of the depth-dependency of shear-wave velocities for every location. We apply this method to a 1 km2 investigation area in the Baltic Sea (northern Germany). The phase-slowness maps obtained in step (2) show lateral variation of up to 150 per cent. The shear-wave velocity models derived in the third step typically have very low values (60–80 m s−1) in the top four meters where fine muddy sands can be observed, and values exceeding 170 m s−1 for the silts and sands below that level. The upper edge of glacial till with shear-wave velocities of 300–400 m s−1 is situated approximately 20 m below sea bottom. A sensitivity analysis reveals a maximum penetration depth of about 40 m below sea bottom, and that density may be an important parameter, best resolvable with multimode inversion.
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  • 76
    Publication Date: 2018-07-13
    Description: Crustal- and upper-mantle structures of the subduction zone in south central Chile, between 42 degrees S and 46 degrees S, are determined from seismic wide-angle reflection and refraction data, using the seismic ray tracing method to calculate minimum parameter models. Three profiles along differently aged segments of the subducting Nazca Plate were analysed in order to study subduction zone structure dependencies related to the age, that is, thermal state, of the incoming plate. The age of the oceanic crust at the trench ranges from 3 Ma on the southernmost profile, immediately north of the Chile triple junction, to 6.5 Ma old about 100 km to the north, and to 14.5 Ma old another 200 km further north, off the Island of Chiloe. Remarkable similarities appear in the structures of both the incoming as well as the overriding plate. The oceanic Nazca Plate is around 5 km thick, with a slightly increasing thickness northward, reflecting temperature changes at the time of crustal generation. The trench basin is about 2 km thick except in the south where the Chile Ridge is close to the deformation front and only a small, 800-m-thick trench infill could develop. In south central Chile, typically three quarters (1.5 km) of the trench sediments subduct below the decollement in the subduction channel. To the north and south of the study area, only about one quarter to one third of the sediments subducts, the rest is accreted above. Similarities in the overriding plate are the width of the active accretionary prism, 35-50 km, and a strong lateral crustal velocity gradient zone about 75-80 km landward from the deformation front, where landward upper-crustal velocities of over 5.0-5.4 km s〈SU-1〈/SU decrease seaward to around 4.5 km s〈SU-1〈/SU within about 10 km, which possibly represents a palaeo-backstop. This zone is also accompanied by strong intraplate seismicity. Differences in the subduction zone structures exist in the outer rise region, where the northern profile exhibits a clear bulge of uplifted oceanic lithosphere prior to subduction whereas the younger structures have a less developed outer rise. This plate bending is accompanied by strongly reduced rock velocities on the northern profile due to fracturing and possible hydration of the crust and upper mantle. The southern profiles do not exhibit such a strong alteration of the lithosphere, although this effect may be counteracted by plate cooling effects, which are reflected in increasing rock velocities away from the spreading centre. Overall there appears little influence of incoming plate age on the subduction zone structure which may explain why the M-w = 9.5 great Chile earthquake from 1960 ruptured through all these differing age segments. The rupture area, however, appears to coincide with a relatively thick subduction channel.
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  • 77
    Publication Date: 2018-07-13
    Description: The Central Costa Rican Pacific margin is characterized by a high-seismicity rate, coincident with the subduction of rough-relief ocean floor and has generated earthquakes with magnitude up to seven in the past. We inverted selected P-wave traveltimes from earthquakes recorded by a combined on- and offshore seismological array deployed during 6 months in the area, simultaneously determining hypocentres and the 3-D tomographic velocity structure on the shallow part of the subduction zone (〈70 km). The results reflect the complexity associated to subduction of ocean-floor morphology and the transition from normal to thickened subducting oceanic crust. The subducting slab is imaged as a high-velocity perturbation with a band of low velocities (LVB) on top encompassing the intraslab seismicity deeper than ∼30 km. The LVB is locally thickened by the presence of at least two subducted seamounts beneath the margin wedge. There is a general eastward widening of the LVB over a relatively short distance, closely coinciding with the onset of an inverted forearc basin onshore and the appearance of an aseismic low-velocity anomaly beneath the inner forearc. The latter coincides spatially with an area of the subaerial forearc where differential uplift of blocks has been described, suggesting tectonic underplating of eroded material against the base of the upper plate crust. Alternatively, the low velocities could be induced by an accumulation of upward migrating fluids. Other observed velocity perturbations are attributed to several processes taking place at different depths, such as slab hydration through outer rise faulting, tectonic erosion and slab dehydration.
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  • 78
    Publication Date: 2018-07-13
    Description: Seismic reflection and refraction data were acquired along the southeast margin of Flemish Cap at a position conjugate to drilling and geophysical surveys across the Galicia Bank margin. The data document first-order asymmetry during final break-up between Newfoundland and Iberia. An abrupt necking profile of continental crust observed off Flemish Cap contrasts strongly with gradual tapering on the conjugate margin. There is no evidence beneath Flemish Cap for a final phase of continental extension that resulted in thin continental crust underlain by a strong ‘S’-like reflection, which indicates that this mode of extension occurred only on the Galicia Bank margin. Compelling evidence for a broad zone of exhumed mantle or for peridotite ridges is also lacking along the Flemish Cap margin. Instead, anomalously thin, 3–4-km-thick oceanic crust is observed. This crust is highly tectonized and broken up by high-angle normal faulting. The thin crust and rift structures that resemble the abandoned spreading centre in the Labrador sea suggest that initial seafloor spreading was affected by processes observed in present-day ultra-slow spreading environments. Landwards, Flemish Cap is underlain by a highly reflective lower crust. The reflectivity most likely originates from older Palaeozoic orogenic structures that are unrelated to extension and break-up tectonics.
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  • 79
    Publication Date: 2018-07-04
    Description: The great cormorant Phalacrocorax carbo is thought to have a wettable plumage, providing low body insulation during foraging. Great cormorants should thus be constrained by water temperatures, and show high energy requirements. Surprisingly, this species has one of the widest breeding distributions of all diving birds, and does not require more food than these other species. We explored this apparent paradox by comparing the insulative properties of body plumage in four subspecies of great cormorants ranging from tropical to polar regions. We found that all subspecies retained an insulating air layer in their plumage, which was, however, much thinner than for other species of diving birds. Detailed examination of the plumage showed that each cormorant body feather has a loose, instantaneously wet, outer section and a highly waterproof central portion. This indicates that the plumage of great cormorants is only partly wettable, and that birds maintain a thin layer of air in their plumage. Our findings suggest an unusual morphological-functional adaptation to diving which balances the antagonist constraints of thermoregulation and buoyancy.
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  • 80
    Publication Date: 2018-06-25
    Description: The facultative red algal epiphyte Acrochaetium sp. liberated spores preferentially and recruited more successfully in laboratory cultures when its host Gracilaria chilensis C. J. Bird, McLachlan et E. C. Oliveira was present. The same effect was also induced by cell-free medium from G. chilensis, suggesting it contained a molecular signal. Antibiotics prevented spore release in Acrochaetium sp., even when G. chilensis was present, suggesting a prokaryotic origin of the signal. Simultaneous application of N-butyl-homoserine-lactone (BHL) restored the spore-release capacity, which demonstrated that spore release was not directly inhibited by the antibiotics and indicated that bacterially generated N-acyl-homoserine-lactones (AHLs) regulate spore release. An involvement of AHL was further indicated by the fact that two different halofuranone inhibitors of AHL receptors also inhibited spore release when they were applied at relatively low concentrations. Of seven different AHLs tested, only BHL induced the effect. However, BHL was only active at relatively high concentrations (100 μM), and it was not detected in spore-release-inducing medium of G. chilensis. Another water-soluble AHL or an AHL structure analog is therefore probably the active compound in G. chilensis cultures. The data presented demonstrate that life cycle completion in Acrochaetium sp. strongly depends on bacteria, which are not always present in sufficient numbers on the alga itself. Exogenous bacteria that are associated with G. chilensis or with other potential substrates may therefore trigger timely spore liberation in Acrochaetium sp., provided that the necessary concentration of AHL is reached. This first finding of AHL perception in a red alga confirms that AHL signalling is more widespread among eukaryotes than was thought until recently. However, spore release of a second red alga, Sahlingia subintegra (Rosenv.) Kornmann, was unaffected by AHL, and the reaction observed is therefore not universal.
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  • 81
    Publication Date: 2018-06-25
    Description: The two agar-producing red algae, Gracilaria chilensis C. J. Bird, McLachlan & E. C. Oliveira and Gracilaria conferta (Schousboe ex Montagne) Montagne, responded with hydrogen peroxide (H2O2) release when agar oligosaccharides were added to the medium. In G. conferta, a transient release was observed, followed by a refractory state of 6 h. This response was sensitive to chemical inhibitors of NADPH oxidase, protein kinases, protein phosphatases, and calcium translocation in the cell, whereas it was insensitive to inhibitors of metalloenzymes. Transmission electron microscopic observations of the H2O2-dependent formation of cerium peroxide from cerium chloride indicated oxygen activation at the plasma membrane of G. conferta. A putative system, consisting of a receptor specific to agar oligosaccharides and a plasma membrane-located NADPH oxidase, appears to be responsible for the release of H2O2 in G. conferta. Subcellular examination of G. chilensis showed that the H2O2 release was located in the cell wall. It was sensitive to inhibitors of metalloenzymes and flavoenzymes, and no refractory state was observed. The release was correlated with accumulation of an aldehyde in the algal medium, suggesting that an agar oligosaccharide oxidase is present in the apoplast of G. chilensis. The presence of this enzyme could also be demonstrated by polyacrylamide electrophoresis under nondenaturating conditions and proven to be variable. Cultivation of G. chilensis at 16 to 17°C resulted in significantly stronger expression of agar oligosaccharide oxidase than cultivation at 12°C, which indicates that the enzyme is used under conditions that generally favor microbial agar macerating activity.
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  • 82
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    Wiley
    In:  Journal of Phycology, 44 . pp. 85-90.
    Publication Date: 2018-05-30
    Description: The prevalence of antigrazing defense induction and the cues triggering induction in marine macroalgae are generally not well understood. We examined the capacity of defense and the mechanisms of regulation in five common perennial macroalgal species from the Baltic Sea, Furcellaria lumbricalis (Huds.) J. V. Lamour., Delesseria sanguinea (Huds.) J. V. Lamour., Phyllophora pseudoceranoides (S. G. Gmel.) Newroth et A. R. A. Taylor, Fucus serratus L., and Fucus evanescens C. Agardh. Specifically, we investigated whether direct feeding and/or waterborne cues from feeding on neighboring conspecifics decreased the palatability of the tested algae. Direct feeding by the local isopod Idotea baltica triggered the induction of chemical defense in Fur. lumbricalis, D. sanguinea, P. pseudoceranoides, F. serratus, and F. evanescens. Conversely, we did not find any evidence for waterborne cues associated with feeding to trigger defense induction in neighboring conspecifics.
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  • 83
    Publication Date: 2018-05-30
    Description: A wide range of bicarbonate concentrations was used to monitor the kinetics of bicarbonate (HCO3−) use in both photosynthesis and calcification in two reef‐building corals, Porites porites and Acropora sp. Experiments carried out close to the P. porites collection site in Barbados showed that additions of NaHCO3 to synthetic seawater proportionally increased the calcification rate of this coral until the concentration exceeded three times that of seawater (6 mM). Photosynthetic rates were also stimulated by HCO3− addition, but these became saturated at a lower concentration (4 mM). Similar experiments on aquarium‐acclimated colonies of Indo‐Pacific Acropora sp. showed that calcification and photosynthesis in this coral were enhanced to an even greater extent than P. porites, with calcification continuing to increase above 8 mM HCO3−, and photosynthesis saturating at 6 mM. Calcification rates of Acropora sp. were also monitored in the dark, and, although these were lower than in the light for a given HCO3− concentration, they still increased dramatically with HCO3− addition, showing that calcification in this coral is light stimulated but not light dependent.
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  • 84
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    In:  Journal of Phycology, 41 (5). pp. 950-956.
    Publication Date: 2018-05-30
    Description: The influence of fluctuating light on diversity and species number of a natural phytoplankton assemblage competing for nutrients was investigated for 48 days under semicontinuous culture conditions. Light conditions were either changed periodically from high (65 μmol photons·m−2·s−1) to low intensity (15 μmol photons·m−2·s−1) at intervals of 1, 3, 6, and 12 days or fixed at constant light conditions of intermediate intensity (40 μmol photons·m−2·s−1). Fluctuating light at intervals of 1–12 days significantly affected phytoplankton diversity. The development of phytoplankton communities differed in treatments with different light regimes. In treatments with long light intervals, species abundance oscillated with the light phases. Differences in the temporal development of phytoplankton communities resulted in hump‐shaped relations between the interval length of the light phases and both species number and diversity index and can be explained by the intermediate disturbance hypothesis. Fluctuating light tends to sustain phytoplankton diversity under nutrient limitation if the light regime changes in the order of several days. This indicates that temporal changes in weather regime are important in preventing competitive exclusion of phytoplankton species in nature.
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  • 85
    Publication Date: 2018-05-30
    Description: Herbivory is particularly intense in tropical benthic communities, suggesting preference of constitutive, rather than inducible, anti-herbivory defense. The objective of the study was to examine whether anti-herbivore defenses in the red alga Hypnea pannosa J. Agardh and the brown algae Sargassum asperifolium Hering and G. Martens ex J. Agardh and Cystoseira myrica (S.G. Gmelin) C. Agardh could be induced and subsequently reduced in response to grazing by the amphipod Cymadusa filosa Savigny. During a 14-day treatment phase, algae were exposed to amphipod grazing or were left ungrazed (control). Subsequently, one subset of algae was used in feeding assays, whereas another was cultivated for additional 14 days without consumers (recovery phase). At the end of each phase, bioassays were conducted to detect defensive traits in terms of differences in consumption rates of grazed and control pieces of live algae and agar-based food containing nonpolar algal extracts. Consumption of grazed live S. asperifolium and H. pannosa specimens was lower than of control algae. Furthermore, nonpolar extracts of grazed S. asperifolium and C. myrica were less preferred than those from control algae. Defensive responses were exclusively detected after the treatment phase, although strong preference of ungrazed H. pannosa and C. myrica over grazed conspecifics continued throughout the recovery phase. These findings suggest that phenotypic plasticity in anti-herbivory defense of marine macroalgae 1) might be more common than previously shown, 2) could be switched on and off within 2 weeks, and 3) can be found in nonpolar algal extracts.
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  • 86
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    In:  Global Change Biology, 13 . pp. 1-12.
    Publication Date: 2018-05-17
    Description: It is widely accepted that climate change constrains biota. Yet, because of the lack of consistent multisite and multitaxon surveys, few studies have addressed general rules about how climate change impacts on structure and diversity of animal communities. Especially, the relative influence of nonclimatic anthropogenic disturbances on this impact is fairly unknown. Here, we present for the first time a meta-analysis assessing the effect of global warming on stream organisms. Fish communities of large rivers in France undergoing various anthropogenic pressures showed significant increase in proportions of warm-water species and of specific richness during the last 15–25 years. Conversely, the equitability decreased, indicating a gradual decrease of the number of dominant species. Finally, the total abundance increased, coupled with rejuvenation and changes in size-structure of the communities. Interestingly, most of these effects were not depressed by the strength of nonclimatic anthropogenic disturbances. Conversely, geographical location of communities and especially closeness of natural barriers to migration could influence their response to climate change. Indeed, increase in the proportion of southern species seemed hindered at sites located close to the southern limit of the European species’ geographical ranges. This work provides new evidence that climate change have deep impacts on communities which, by overtaking the effects of nonclimatic anthropogenic disturbances, could be more substantial than previously thought. Overall, our results stress the importance of considering climate change impacts in studies addressing community dynamics, even in disturbed sites.
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  • 87
    Publication Date: 2018-05-17
    Description: In marine ecosystems, pelagic copepods, chaetognaths and jellyfish play a key role in matter and energy flow. While copepods support most food webs and the biological pump of carbon into the deep ocean, chaetognaths and jellyfish may affect the strength of the top‐down control upon plankton communities. In this study, we show that the main events in the long‐term variability of these functional groups in the Northwestern Mediterranean were tightly linked to changes of climate forcing of the North Atlantic sector. Large‐scale climate forcing has altered the pelagic food‐web dynamics through changes in biological interactions, competition and predation, leading to substantial changes manifested as bursts or collapses in zooplankton populations, and consequently to a major change ca. 1987. These events become more frequent in the 1980s and the early 1990s in the studied zooplankton functional groups suggesting a shift in the functioning of the pelagic ecosystem. The environmental modifications and the results reported here are therefore, indicators of a regime change pointing to a more regeneration‐dominated system in the study area. We suggest a chain of mechanisms, whereby climate variation has modified the long‐term dynamics of pelagic copepods, chaetognaths and jellyfish in the Ligurian Sea.
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  • 88
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    Wiley
    In:  Global Change Biology, 14 . pp. 1199-1208.
    Publication Date: 2018-05-17
    Description: In this article, we show by mesocosm experiments that winter and spring warming will lead to substantial changes in the spring bloom of phytoplankton. The timing of the spring bloom shows only little response to warming as such, while light appears to play a more important role in its initiation. The daily light dose needed for the start of the phytoplankton spring bloom in our experiments agrees well with a recently published critical light intensity found in a field survey of the North Atlantic (around 1.3 mol photons m−2 day−1). Experimental temperature elevation had a strong effect on phytoplankton peak biomass (decreasing with temperature), mean cell size (decreasing with temperature) and on the share of microplankton diatoms (decreasing with temperature). All these changes will lead to poorer feeding conditions for copepod zooplankton and, thus, to a less efficient energy transfer from primary to fish production under a warmer climate.
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  • 89
    Publication Date: 2018-05-17
    Description: In marine ecosystems, pelagic copepods, chaetognaths and jellyfish play a key role in matter and energy flow. While copepods support most food webs and the biological pump of carbon into the deep ocean, chaetognaths and jellyfish may affect the strength of the top‐down control upon plankton communities. In this study, we show that the main events in the long‐term variability of these functional groups in the Northwestern Mediterranean were tightly linked to changes of climate forcing of the North Atlantic sector. Large‐scale climate forcing has altered the pelagic food‐web dynamics through changes in biological interactions, competition and predation, leading to substantial changes manifested as bursts or collapses in zooplankton populations, and consequently to a major change ca. 1987. These events become more frequent in the 1980s and the early 1990s in the studied zooplankton functional groups suggesting a shift in the functioning of the pelagic ecosystem. The environmental modifications and the results reported here are therefore, indicators of a regime change pointing to a more regeneration‐dominated system in the study area. We suggest a chain of mechanisms, whereby climate variation has modified the long‐term dynamics of pelagic copepods, chaetognaths and jellyfish in the Ligurian Sea.
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  • 90
    Publication Date: 2018-05-17
    Description: Future levels in ultraviolet-B (UVB) radiation are expected to increase directly due to stratospheric ozone depletion and under water indirectly by, for example, global warming effects on DOC concentrations, altered trophic interactions in the plankton, or reduced eutrophication. While detrimental UV effects have been reported at the cellular level, little to nothing is known about community-wide effects of ambient and future UVB radiation. In a 4-month field experiment, the ambient UV regime was (i) reduced by cut-off filters which removed either UVB or total UV from the solar spectrum or (ii) increased to predicted future levels by UVB lamps. To allow relating the effects of present and future UV regimes to another important ecological control of community structure and diversity in subtidal marine habitats, consumer effects were quantified by an exclusion treatment under ambient light regimes. Ambient UV regimes did not affect community structure, biomass accrual, and diversity. In contrast, under enhanced UVB levels, the dominance of the competitively superior blue mussels increased and species richness and biomass accrual decreased. Species composition of the assemblages differed between the two UV regimes. Effects of enhanced UVB radiation and of consumption on biomass accrual, diversity, and structure of the community were comparable in magnitude and timing, but of opposite direction. In contrast, the effects of enhanced UVB radiation on growth and abundance of mussels were in the same direction, but shorter and weaker than consumer effects. Most UV effects were transitory and vanished within the first 2 months of succession. Our results indicate that present and future UVB levels may be of limited importance and not stronger in effect size than other ecological controls in structuring the shallow-water low-diversity macrobenthic communities in temperate regions.
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  • 91
    Publication Date: 2018-05-17
    Description: We studied the physiological response of Pseudocalanus sp. under four different temperature elevation regimes: +0, +2, +4 and +6 °C above the decadal average temperature in the Western Baltic Sea. We measured fecal pellet (FP) production rates, which was taken as a proxy of ingestion, egg production (EPR) and respiration rates. Experiments lasted from mid‐February to end April, corresponding most of the observations to the postspring bloom phase. We combined small scale incubations with the use of big (ca. 1400 L) mesocosms, which have previously been shown to be appropriate when studying phyto‐ and zooplankton succession, and the water used for the incubations was taken from the mesocosm tanks. Given that the phytoplankton succession varied between the four thermal scenarios, we evaluated (excepting in the case of the respiration rates, where incubations were carried out using 0.2 μm filtered water) both the temperature and the associated food concentration effects. Respiration and ingestion rates were found to increase with temperature. As for EPR, they also increased with temperature during the bloom, but remained at low and constant values during the postbloom in all the four treatments due to the food limitation. Linked to the temperature rise, we also detected an increase in instantaneous mortality rates and a reduction in the net growth efficiency. Finally, we discuss the potential implications of our findings for the spring phyto‐ and zooplankton succession under the forecasted climate warming, as well as for the fisheries in the Baltic Sea, where Pseudocalanus sp. is a key species.
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  • 92
    Publication Date: 2018-05-16
    Description: We present in situ biophysical measurements and bioassay experiments that demonstrate iron limitation of primary productivity during the spring bloom in the central North Atlantic. Mass balance calculations indicate that nitrate drawdown is iron (Fe)-limited and that aeolian Fe supply to this region cannot support maximal phytoplankton growth during the bloom. Using a simple simulation model, we show that relief of Fe limitation during the spring bloom can increase nitrate drawdown and, hence, new primary production, by 70%. We conclude that the episodic nature of iron supplied by dust deposition is an important factor controlling the dynamics of the spring bloom. From this, we hypothesize that variability in the timing and magnitude of the spring bloom in response to aeolian Fe supply will affect carbon drawdown and food web dynamics in the central North Atlantic
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  • 93
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    Wiley
    In:  International Journal for Numerical and Analytical Methods in Geomechanics, 31 (3). pp. 373-393.
    Publication Date: 2018-04-24
    Description: In contrast to continuum systems where localization or shear banding arises through a bifurcation in a predefined system of differential equations, shear bands emerge in numerical simulations of deforming granular systems with no prescribed mathematical relations other than simple contact forces between particles. Shear bands emerge from the self‐organization of large numbers of particles with long‐range geometrical interactions playing a dominant role; both translation and rotation of particles are important. Granular media therefore deform more like materials with non‐local constitutive relations than materials where only first‐order interactions are relevant. In this paper we adopt a thermo‐mechanical approach and explore the fluxes of energy in the evolving granular system (that has cohesion as well as friction between the particles) as it is loaded through the unstable localization regime, and track the evolution of energy dissipation. As in continua, the sign of the second‐order work defines the emergence of instability in the system. Initially, these instabilities decay into stable configurations of particles but with continued loading, force chains collapse locally to generate geometrically necessary fractures. These zones then propagate to generate localization zones. When these fractures form a continuous network, the system is at the percolation thresh‐hold for broken bonds. However, long before this stage, the second‐order work fluctuates in bursts weakly correlated with bursts in kinetic energy as damage accumulates. This behaviour suggests that any continuum constitutive description of granular media must be (i) non‐local in an anisotropic manner, (ii) micro‐polar, and (iii) involve damage evolution.
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  • 94
    Publication Date: 2018-03-22
    Description: This study examined stocking with three early life stages of brown trout, Salmo trutta L., in the context of rehabilitating a native lineage. Experimental sections in five streams were stocked successively with three stages (I: unfed fry at the end of the reabsorption phase, II: fed fry measuring 2–3 cm and III: fed fry measuring 4–5 cm) derived from a hatchery stock bred from wild spawners. The three stages were distinguished by single or multiple fluoromarking of the otoliths with alizarin redS. The index of relative stocking efficiency was greater for stage II than for stage I in all sections and equivalent or greater than that for stage III. Stage II achieved significantly larger mean length and weight in autumn than stage III stockings.
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  • 95
    Publication Date: 2018-03-15
    Description: Sections of the lateral line organ, primary and secondary blood vessels and skin from the Atlantic cod Gadus morhua, Linnaeus 1758, were examined by light and transmission electron microscopy (TEM). The lateral line organ showed a structural analogy to the semicircular canals of the mammalian inner ear. A pericanalicular sinus (PCS), a canal of very loose connective tissue, surrounded the lateral line canal (LLC), separated by a multilayered epithelial wall. Located dorsal and ventral to the lateral line organ secondary vessels of capillary dimensions were found in association with the PCS. TEM of the wall of these dorso-ventral vessels showed single tight junction contacts between the endothelial cells, allowing paracellular fluid exchange between the secondary vascular system and the PCS, an indication supported by horseradish peroxidase (HRP) tracer experiments, which showed reaction products in the PCS within 2 h after injecting HRP into the systemic circulation. The multilayered epithelial wall of the LLC showed multiple tight junctions between cells, making this boundary permeable only through transcellular transport.
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  • 96
    Publication Date: 2018-02-20
    Description: Blennolides A–G (2–8), seven unusual chromanones, were isolated together with secalonic acid B (1) from Blennoria sp., an endophytic fungus from Carpobrotus edulis. This is the first reported isolation of the blennolides 2 and 3 (hemisecalonic acids B and E), the existence of which as the monomeric units of the dimeric secalonic acids had long been postulated. A compound of the proposed structure 4 (β-diversonolic ester) will need to be revised, as its reported data do not fit those of the established structure of blennolide C (4). Other monomers, the blennolides D–F (5–7) seem to be derived from blennolides A (2) and B (3) by rearrangement of the hydroaromatic ring. The heterodimer 8, composed of the monomeric blennolide A (2) and the rearranged 11-dehydroxy derivative of blennolide E (6), extends the ergochrome family with an ergoxanthin type of skeleton. The structures of the new compounds were elucidated by detailed spectroscopic analysis and further confirmed by an X-ray diffraction study of a single crystal of 2. The absolute configurations were determined by TDDFT calculations of CD spectra, including the solid-state CD/TDDFT approach. Preliminary studies showed strong antifungal and antibacterial activities of these compounds against Microbotryum violaceum and Bacillus megaterium, respectively. They were also active against the alga Chlorella fusca and the bacterium Escherichia coli.
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  • 97
    facet.materialart.
    Unknown
    Wiley
    In:  Current Protocols in Human Genetics, 53 (Suppl. 3D). A.3D.1-A.3D.21.
    Publication Date: 2018-01-16
    Description: Quantitation of nucleic acids is a fundamental tool in molecular biology that requires accuracy, reliability, and the use of increasingly smaller sample volumes. This unit describes the traditional absorbance measurement at 260 nm and three more sensitive fluorescence techniques, as well as three microvolume methods that use fiber optic technology in specialized cells or instrumentation. These procedures allow quantitation of DNA solutions ranging from 1 pg/µl to 50 mg/ml.
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  • 98
    Publication Date: 2018-01-01
    Description: Permafrost environments in the Arctic are characterized by extreme environmental conditions that demand a specific resistance from microorganisms to enable them to survive. In order to understand the carbon dynamics in the climate-sensitive Arctic permafrost environments, the activity and diversity of methanogenic communities were studied in three different permafrost soils of the Siberian Laptev Sea coast. The effect of temperature and the availability of methanogenic substrates on CH4 production was analysed. In addition, the diversity of methanogens was analysed by PCR with specific methanogenic primers and by denaturing gradient gel electrophoresis (DGGE) followed by sequencing of DGGE bands reamplified from the gel. Our results demonstrated methanogenesis with a distinct vertical profile in each investigated permafrost soil. The soils on Samoylov Island showed at least two optima of CH4 production activity, which indicated a shift in the methanogenic community from mesophilic to psychrotolerant methanogens with increasing soil depth. Furthermore, it was shown that CH4 production in permafrost soils is substrate-limited, although these soils are characterized by the accumulation of organic matter. Sequence analyses revealed a distinct diversity of methanogenic archaea affiliated to Methanomicrobiaceae, Methanosarcinaceae and Methanosaetaceae. However, a relationship between the activity and diversity of methanogens in permafrost soils could not be shown.
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  • 99
    Publication Date: 2018-01-01
    Description: The methane oxidation potential of active layer profiles of permafrost soils from the Lena Delta, Siberia, was studied with regard to its respond to temperature, and abundance and distribution of type I and type II methanotrophs. Our results indicate vertical shifts within the optimal methane oxidation temperature and within the distribution of type I and type II methanotrophs. In the upper active layer, maximum methane oxidation potentials were detected at 21°C. Deep active layer zones that are constantly exposed to temperatures below 2°C showed a maximum potential to oxidize methane at 4°C. Our results indicate a dominance of psychrophilic methanotrophs close to the permafrost table. Type I methanotrophs dominated throughout the active layer profiles but their number strongly fluctuated with depth. In contrast, type II methanotrophs were constantly abundant through the whole active layer and displaced type I methanotrophs close to the permafrost table. No correlation between in situ temperatures and the distribution of type I and type II methanotrophs was found. However, the distribution of type I and type II methanotrophs correlated significantly with in situ methane concentrations. Beside vertical fluctuations, the abundance of methane oxidizers also fluctuated according to different geomorphic units. Similar methanotroph cell counts were detected in samples of a flood plain and a polygon rim, whereas cell counts in samples of a polygon centre were up to 100 times lower.
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  • 100
    Publication Date: 2017-12-31
    Description: Permafrost environments within the Siberian Arctic are natural sources of the climate relevant trace gas methane. In order to improve our understanding of the present and future carbon dynamics in high latitudes, we studied the methane concentration, the quantity and quality of organic matter, and the activity and biomass of the methanogenic community in permafrost deposits. For these investigations a permafrost core of Holocene age was drilled in the Lena Delta (72°22′N, 126°28′E). The organic carbon of the permafrost sediments varied between 0.6% and 4.9% and was characterized by an increasing humification index with permafrost depth. A high CH4 concentration was found in the upper 4 m of the deposits, which correlates well with the methanogenic activity and archaeal biomass (expressed as PLEL concentration). Even the incubation of core material at −3 and −6°C with and without substrates showed a significant CH4 production (range: 0.04–0.78 nmol CH4 h−1 g−1). The results indicated that the methane in Holocene permafrost deposits of the Lena Delta originated from modern methanogenesis by cold-adapted methanogenic archaea. Microbial generated methane in permafrost sediments is so far an underestimated factor for the future climate development.
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