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  • Mice, Inbred C57BL  (470)
  • Engineering
  • Life and Medical Sciences
  • Nature Publishing Group (NPG)  (479)
  • University of Florida Coastal and Oceanographic Engineering Department  (7)
  • 1
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    University of Florida Coastal and Oceanographic Engineering Department | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/472 | 3 | 2020-08-24 02:58:29 | 472 | Oceanographic Engineering Program, Department of Civil and Coastal Engineering, University of Florida
    Publication Date: 2021-06-29
    Description: One and two-dimensional, second order turbulence plant canopy flowmodels were developed for the purpose of estimating the effect ofcoastal vegetation on wind blown sand transport. The computer programthat solves the governing differential equations uses measured leafarea density profiles and drag coefficients for crop plants similar inshape and size to the more common coastal vegetation in Florida. (Document has 57 pages.)
    Keywords: Atmospheric Sciences ; Engineering ; Earth Sciences ; coastal vegetation ; dunes ; winds ; sediment transport
    Repository Name: AquaDocs
    Type: monograph
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  • 2
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    University of Florida Coastal and Oceanographic Engineering Department | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/212 | 3 | 2020-08-24 02:56:19 | 212 | Oceanographic Engineering Program, Department of Civil and Coastal Engineering, University of Florida
    Publication Date: 2021-06-27
    Description: This study was carried out to examine the effects of seawalls on the adjacentbeach by three dimensional model test. The results obtained from model test wereanalyzed in terms of volumetric changes and shoreline and hydrographic change toquantify the effects of seawalls.The experiments were carried out in the wave basin of Coastal and OceanographicEngineering department, University of Florida. A model seawall was installedon the test beach (19mxl4m) which was initially molded into equilibriumshapes. During the test, hydrographic surveys were conducted at regular time intervals.The main variable in the experiment is the wave angle. Cases both withand without seawall were tested. (141pp.)
    Description: Sea Grant Project No. R/C-S-26; Grant No. NA86AA-D-SG068
    Keywords: Engineering ; seawalls ; models ; beaches
    Repository Name: AquaDocs
    Type: monograph
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  • 3
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    University of Florida Coastal and Oceanographic Engineering Department | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/210 | 3 | 2020-08-24 02:55:34 | 210 | Oceanographic Engineering Program, Department of Civil and Coastal Engineering, University of Florida
    Publication Date: 2021-06-27
    Description: It is well known that tidal inlets tend to cause accretion on updrift shorelines anderosion on downdrift shorelines. This study documented the shoreline changes near severaltidal inlets along Florida's east and west coasts. An analytical and a numerical methodwere used to attempt to predict the shoreline changes downdrift of these inlets. (142pp.)
    Keywords: Oceanography ; Engineering ; shore protection ; beach erosion ; inlets ; Florida ; thesis ; Ft. Pierce Inlet ; Sebastian Inlet ; St. Lucie Inlet ; Boca Raton Inlet ; baker's Haulover ; St. Andrews Bay Entrance ; Venice Inlet ; Lake Worth Inlet
    Repository Name: AquaDocs
    Type: monograph
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  • 4
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    University of Florida Coastal and Oceanographic Engineering Department | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/128 | 3 | 2020-08-24 02:54:16 | 128 | Oceanographic Engineering Program, Department of Civil and Coastal Engineering, University of Florida
    Publication Date: 2021-06-26
    Description: The purpose of this report is to develop and illustrate with examples readily appliedmethodologies for calculating the response of shorelines in the vicinity of beach nourishmentprojects. The need for such methodology is a result of Florida Statutes 161.053(G) and Rule16B-33.024(3)(e) which require, with minor exceptions, coastal structures to be locatedlandward of a thirty- year projection of the Seasonal High Water Shoreline (SHWL). (163pp.)
    Description: Prepared for: Division of Beaches and Shores Florida Department of Natural Resources 3900 Commonwealth Boulevard Tallahassee, FL 32399
    Keywords: Engineering ; Environment ; beach nourishment ; Florida
    Repository Name: AquaDocs
    Type: monograph
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  • 5
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    University of Florida Coastal and Oceanographic Engineering Department | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/127 | 3 | 2020-08-24 02:53:49 | 127 | Oceanographic Engineering Program, Department of Civil and Coastal Engineering, University of Florida
    Publication Date: 2021-06-26
    Description: The critical need to predict the turbidity in water due to fine-grained sediment suspensionunder wave action over mud deposits for sedimentation and erosion studies, as well assorbed contaminant transport, is well known. Since fall velocities of fine sediment particlesare very small, they can be easily transported by hydrodynamic flows such as waves andcurrents. The presence of these particles in the water column affects accoustic transmission,heat absorption and depth of the eutrophic zone (Luettich et al., 1989). Because these sedimentsalso have a strong affinity for sorbing nutrients and toxic chemicals, sediments whichhave been deposited on the bottom may function as a source of contaminants to the watercolumn if they are disturbed by eroding forces resulting, for instance, from wave action. Anoutstanding example of a water body for these problems is Lake Okeechobee, the largestshallow lake in Florida. This lake shows typical signs of artificial eutrophication mainly dueto increased phosphorus loading associated with the surrounding region. Resuspension of sediment at the bottom of Lake Okeechobee composed of fine-grainedmaterial has been examined. A sediment transport model was used to simulate likelytrends in the evolution of the vertical suspended sediment concentration profile resultingfrom wave action, and the corresponding eroded bed depth was calculated through massbalance. Requisite information on characteristic parameters and relationships related tofine sediment erodibility were derived from field sampling of bottom sediment in the lake,and through laboratory experiments using this sediment and lake water. (161pp.)
    Description: South Florida Water Management District
    Keywords: Engineering ; Limnology ; Environment ; Chemistry ; Erosion ; Fine sediment ; Lake mud ; Lake Okeechobee
    Repository Name: AquaDocs
    Type: monograph
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  • 6
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    University of Florida Coastal and Oceanographic Engineering Department | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/165 | 3 | 2020-08-24 02:54:43 | 165 | Oceanographic Engineering Program, Department of Civil and Coastal Engineering, University of Florida
    Publication Date: 2021-06-26
    Description: A method is presented and illustrated with examples to establishappropriate storm damage reduction and recreational benefits frombeach nourishment projects. Unlike previous methods, benefits toproject adjacent areas are recognized due to sand transport out of theproject area and deposition on adjacent beaches. (31pp.)
    Keywords: Engineering ; Environment ; Beach nourishment ; Damage reduction ; Nourishment benefits ; Recreational benefits ; Storm damage
    Repository Name: AquaDocs
    Type: monograph
    Format: application/pdf
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  • 7
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    University of Florida Coastal and Oceanographic Engineering Department | Gainesville, FL
    In:  http://aquaticcommons.org/id/eprint/178 | 3 | 2020-08-24 02:55:06 | 178 | Oceanographic Engineering Program, Department of Civil and Coastal Engineering, University of Florida
    Publication Date: 2021-06-26
    Description: This study has evaluated the volumes of beach quality material availablefrom the dredging planned for the deepening of the Pensacola Bay EntranceChannel. Recommendations have been made for volumes and configurations ofplacement on portions of the Perdido Key Unit of Gulf Islands National Seashore. (52pp.)
    Description: National Park Service
    Description: Prepared For: National Park Service 75 Spring Street, SW Atlanta, GA 30303
    Keywords: Engineering ; Environment ; Pensacola Bay Entrance Channel ; beach nourishment ; Perdido Key ; Gulf Islands National Seashore ; Florida ; sediment transport
    Repository Name: AquaDocs
    Type: monograph
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  • 8
    Publication Date: 2016-04-14
    Description: Bone marrow endothelial cells (BMECs) form a network of blood vessels that regulate both leukocyte trafficking and haematopoietic stem and progenitor cell (HSPC) maintenance. However, it is not clear how BMECs balance these dual roles, and whether these events occur at the same vascular site. We found that mammalian bone marrow stem cell maintenance and leukocyte trafficking are regulated by distinct blood vessel types with different permeability properties. Less permeable arterial blood vessels maintain haematopoietic stem cells in a low reactive oxygen species (ROS) state, whereas the more permeable sinusoids promote HSPC activation and are the exclusive site for immature and mature leukocyte trafficking to and from the bone marrow. A functional consequence of high permeability of blood vessels is that exposure to blood plasma increases bone marrow HSPC ROS levels, augmenting their migration and differentiation, while compromising their long-term repopulation and survival. These findings may have relevance for clinical haematopoietic stem cell transplantation and mobilization protocols.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Itkin, Tomer -- Gur-Cohen, Shiri -- Spencer, Joel A -- Schajnovitz, Amir -- Ramasamy, Saravana K -- Kusumbe, Anjali P -- Ledergor, Guy -- Jung, Yookyung -- Milo, Idan -- Poulos, Michael G -- Kalinkovich, Alexander -- Ludin, Aya -- Kollet, Orit -- Shakhar, Guy -- Butler, Jason M -- Rafii, Shahin -- Adams, Ralf H -- Scadden, David T -- Lin, Charles P -- Lapidot, Tsvee -- EB017274/EB/NIBIB NIH HHS/ -- HL100402/HL/NHLBI NIH HHS/ -- R01 EB017274/EB/NIBIB NIH HHS/ -- U01 HL100402/HL/NHLBI NIH HHS/ -- England -- Nature. 2016 Apr 21;532(7599):323-8. doi: 10.1038/nature17624. Epub 2016 Apr 13.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Immunology, The Weizmann Institute of Science, Rehovot 76100, Israel. ; Wellman Center for Photomedicine, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA. ; Center for Systems Biology, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA. ; Department of Stem Cell and Regenerative Biology, Harvard University, Cambridge, Massachusetts 02138, USA. ; Harvard Stem Cell Institute, Cambridge, Massachusetts 02114, USA. ; Center for Regenerative Medicine and Cancer Center, Massachusetts General Hospital, Boston, Massachusetts 02114, USA. ; Max Planck Institute for Molecular Biomedicine, Department of Tissue Morphogenesis and Faculty of Medicine, University of Munster, D-48149 Munster, Germany. ; Internal Medicine Department, Tel-Aviv Sourasky Medical Center, Tel-Aviv 64239, Israel. ; Department of Genetic Medicine, Weill Cornell Medical College, New York, New York 10065, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27074509" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Antigens, Ly/metabolism ; Arteries/cytology/physiology ; Blood Vessels/*cytology/*physiology ; Bone Marrow/*blood supply ; Bone Marrow Cells/cytology ; Cell Differentiation ; Cell Movement ; Cell Self Renewal ; Cell Survival ; Chemokine CXCL12/metabolism ; Endothelial Cells/physiology ; Female ; *Hematopoiesis ; Hematopoietic Stem Cell Mobilization ; Hematopoietic Stem Cell Transplantation ; Hematopoietic Stem Cells/cytology ; Leukocytes/cytology ; Male ; Membrane Proteins/metabolism ; Mice ; Mice, Inbred C57BL ; Nestin/metabolism ; Pericytes/physiology ; Permeability ; Plasma/metabolism ; Reactive Oxygen Species/metabolism ; Receptors, CXCR4/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2016-04-07
    Description: Neoplastic pancreatic epithelial cells are believed to die through caspase 8-dependent apoptotic cell death, and chemotherapy is thought to promote tumour apoptosis. Conversely, cancer cells often disrupt apoptosis to survive. Another type of programmed cell death is necroptosis (programmed necrosis), but its role in pancreatic ductal adenocarcinoma (PDA) is unclear. There are many potential inducers of necroptosis in PDA, including ligation of tumour necrosis factor receptor 1 (TNFR1), CD95, TNF-related apoptosis-inducing ligand (TRAIL) receptors, Toll-like receptors, reactive oxygen species, and chemotherapeutic drugs. Here we report that the principal components of the necrosome, receptor-interacting protein (RIP)1 and RIP3, are highly expressed in PDA and are further upregulated by the chemotherapy drug gemcitabine. Blockade of the necrosome in vitro promoted cancer cell proliferation and induced an aggressive oncogenic phenotype. By contrast, in vivo deletion of RIP3 or inhibition of RIP1 protected against oncogenic progression in mice and was associated with the development of a highly immunogenic myeloid and T cell infiltrate. The immune-suppressive tumour microenvironment associated with intact RIP1/RIP3 signalling depended in part on necroptosis-induced expression of the chemokine attractant CXCL1, and CXCL1 blockade protected against PDA. Moreover, cytoplasmic SAP130 (a subunit of the histone deacetylase complex) was expressed in PDA in a RIP1/RIP3-dependent manner, and Mincle--its cognate receptor--was upregulated in tumour-infiltrating myeloid cells. Ligation of Mincle by SAP130 promoted oncogenesis, whereas deletion of Mincle protected against oncogenesis and phenocopied the immunogenic reprogramming of the tumour microenvironment that was induced by RIP3 deletion. Cellular depletion suggested that whereas inhibitory macrophages promote tumorigenesis in PDA, they lose their immune-suppressive effects when RIP3 or Mincle is deleted. Accordingly, T cells, which are not protective against PDA progression in mice with intact RIP3 or Mincle signalling, are reprogrammed into indispensable mediators of anti-tumour immunity in the absence of RIP3 or Mincle. Our work describes parallel networks of necroptosis-induced CXCL1 and Mincle signalling that promote macrophage-induced adaptive immune suppression and thereby enable PDA progression.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833566/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4833566/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Seifert, Lena -- Werba, Gregor -- Tiwari, Shaun -- Giao Ly, Nancy Ngoc -- Alothman, Sara -- Alqunaibit, Dalia -- Avanzi, Antonina -- Barilla, Rocky -- Daley, Donnele -- Greco, Stephanie H -- Torres-Hernandez, Alejandro -- Pergamo, Matthew -- Ochi, Atsuo -- Zambirinis, Constantinos P -- Pansari, Mridul -- Rendon, Mauricio -- Tippens, Daniel -- Hundeyin, Mautin -- Mani, Vishnu R -- Hajdu, Cristina -- Engle, Dannielle -- Miller, George -- CA155649/CA/NCI NIH HHS/ -- CA168611/CA/NCI NIH HHS/ -- CA193111/CA/NCI NIH HHS/ -- P30CA016087/CA/NCI NIH HHS/ -- R01 CA168611/CA/NCI NIH HHS/ -- T32 CA193111/CA/NCI NIH HHS/ -- UL1 TR000038/TR/NCATS NIH HHS/ -- England -- Nature. 2016 Apr 14;532(7598):245-9. doi: 10.1038/nature17403. Epub 2016 Apr 6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉S. Arthur Localio Laboratory, Department of Surgery, New York University School of Medicine, 550 First Avenue, New York, New York 10016, USA. ; Department of Cell Biology, New York University School of Medicine, 550 First Avenue, New York, New York 10016, USA. ; Department of Pathology, New York University School of Medicine, 550 First Avenue, New York, New York 10016, USA. ; Cold Spring Harbor Laboratories, Cold Spring Harbor, New York 11724, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27049944" target="_blank"〉PubMed〈/a〉
    Keywords: Adenocarcinoma/immunology/metabolism/pathology ; Animals ; Apoptosis/drug effects ; *Carcinogenesis/drug effects ; Carcinoma, Pancreatic Ductal/immunology/metabolism/pathology ; Cell Line, Tumor ; Cell Proliferation/drug effects ; Chemokine CXCL1/antagonists & inhibitors/*metabolism ; Deoxycytidine/analogs & derivatives/pharmacology ; Disease Progression ; Female ; GTPase-Activating Proteins/metabolism ; Gene Expression Regulation, Neoplastic ; Humans ; *Immune Tolerance ; Lectins, C-Type/immunology/*metabolism ; Male ; Membrane Proteins/immunology/*metabolism ; Mice ; Mice, Inbred C57BL ; *Necrosis ; Pancreatic Neoplasms/*immunology/metabolism/*pathology ; Receptor-Interacting Protein Serine-Threonine Kinases/metabolism ; Signal Transduction ; Up-Regulation
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 10
    Publication Date: 2016-03-31
    Description: Brown and beige adipose tissues can dissipate chemical energy as heat through thermogenic respiration, which requires uncoupling protein 1 (UCP1). Thermogenesis from these adipocytes can combat obesity and diabetes, encouraging investigation of factors that control UCP1-dependent respiration in vivo. Here we show that acutely activated thermogenesis in brown adipose tissue is defined by a substantial increase in levels of mitochondrial reactive oxygen species (ROS). Remarkably, this process supports in vivo thermogenesis, as pharmacological depletion of mitochondrial ROS results in hypothermia upon cold exposure, and inhibits UCP1-dependent increases in whole-body energy expenditure. We further establish that thermogenic ROS alter the redox status of cysteine thiols in brown adipose tissue to drive increased respiration, and that Cys253 of UCP1 is a key target. UCP1 Cys253 is sulfenylated during thermogenesis, while mutation of this site desensitizes the purine-nucleotide-inhibited state of the carrier to adrenergic activation and uncoupling. These studies identify mitochondrial ROS induction in brown adipose tissue as a mechanism that supports UCP1-dependent thermogenesis and whole-body energy expenditure, which opens the way to improved therapeutic strategies for combating metabolic disorders.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chouchani, Edward T -- Kazak, Lawrence -- Jedrychowski, Mark P -- Lu, Gina Z -- Erickson, Brian K -- Szpyt, John -- Pierce, Kerry A -- Laznik-Bogoslavski, Dina -- Vetrivelan, Ramalingam -- Clish, Clary B -- Robinson, Alan J -- Gygi, Steve P -- Spiegelman, Bruce M -- DK31405/DK/NIDDK NIH HHS/ -- Canadian Institutes of Health Research/Canada -- England -- Nature. 2016 Apr 7;532(7597):112-6. doi: 10.1038/nature17399. Epub 2016 Mar 30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02115, USA. ; Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA. ; Broad Institute of Harvard and MIT, Cambridge, Massachusetts 02142, USA. ; Department of Neurology, Harvard Medical School, Boston, Massachusetts 02215, USA. ; MRC Mitochondrial Biology Unit, Hills Road, Cambridge CB2 0XY, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27027295" target="_blank"〉PubMed〈/a〉
    Keywords: Adipose Tissue, Brown/chemistry/cytology/metabolism ; Animals ; Cell Respiration ; Cysteine/*chemistry/genetics/metabolism ; *Energy Metabolism/drug effects ; Female ; Humans ; Ion Channels/*chemistry/deficiency/genetics/*metabolism ; Male ; Mice ; Mice, Inbred C57BL ; Mitochondria/drug effects/*metabolism ; Mitochondrial Proteins/*chemistry/deficiency/genetics/*metabolism ; Mutant Proteins/chemistry/genetics/metabolism ; Oxidation-Reduction ; Reactive Oxygen Species/*metabolism ; Sulfhydryl Compounds/metabolism ; *Thermogenesis/drug effects
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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