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  • 1
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    Caminella (Porifiera, Demospongiae, Geodiidae) from the NE Atlantic (2018)
    PANGAEA
    In:  Supplement to: Cárdenas, Paco; Vacelet, Jean; Chevaldonné, Pierre; Pérez, Thierry; Xavier, Joana R (2018): From marine caves to the deep sea, a new look at Caminella (Demospongiae, Geodiidae) in the Atlanto-Mediterranean region. Zootaxa, 4466(1), 174, https://doi.org/10.11646/zootaxa.4466.1.14
    Details
    Publication Date: 2023-03-10
    Description: Caminella Lendenfeld, 1894 is a poorly known Geodiidae genus with unclear phylogenetic relationships. In order to find new lines of evidence that could shed light on the evolutionary history of Caminella, we decided to revise type material and museum material, as well as examine new material from underwater caves and deep-sea ecosystems. In doing so, we formally show that Isops maculosus Vosmaer, 1894 and Caminella loricata Lendenfeld, 1894 are junior synonyms of Caminella intuta (Topsent, 1892). We discuss different spicule morphological phenotypes in C. intuta, which may be linked to silica availability. We also discovered two new species of deep-sea Caminella: 1) from Cape Verde (Caminella caboverdensis sp. nov.) and 2) from seamounts located south of the Azores archipelago and the North of Spain (Caminella pustula sp. nov.). We reveal that Caminella sterrasters have complex surface microstructures, unique amongst the Geodiidae, where actin tips are linked to each other. Molecular markers (COI, 28S (C1-D2) and 18S) sequenced for some specimens led to new phylogenetic analyses, which continue to suggest a close relationship of Caminella with the Erylinae and Calthropella; these affinities are discussed in light of morphological characters.
    Keywords: Accession number, genetics; Adriatic Sea; Alboran-Is_reconstr; Alboran-Is_st3; Alboran Sea; Alboran-Sea_BV41; Area/locality; Banc-Atlantis_DW265; Banc-Hyeres_DW184; Banc-Plato_DW248; Bay of Biscay; BIO; Biology; Canarias Sea; Cape-Verde_st6-174; Cap-Ferrat-dAil; Cap-lAbeille_reconst; Chak-El-Hatab; Collection; Comment; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Dugi-Otok-Is_Y-Cave; Eastern Basin; El-Cachucho-Bank_DR9; Grand-Banc-Meteor_CP151; Grotte-Cosquer_reconstr; Grotte-de-Bear_reconstr; Grotte-de-Gameau_reconstr; Grotte-des-Tremies_reconstr; Grotte-du-Figuier_reconstr; Grotte-Fauconniere_reconstr; Gruta-do-Carreiro-Maldito_reconstr; Gulf-of-Naples_reconstr; Habitat; Hvar_reconstr; LATITUDE; Le-Petit-Conglue_reconstr; LONGITUDE; Name; Reference/source; Sagres_reconstr; Sampling date; South Atlantic Ocean; Species; SponGES; Station label; Strazica_Velebit-Ch; Tirreno Sea; Tremiti-Is_reconstr; Type; Western Basin
    Type: Dataset
    Format: text/tab-separated-values, 197 data points
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  • 2
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    Transcriptomic and histological analysis (Light and Transmission Electron Microscopy) on five Geodia species to identify their reproductive status and the gene expression during gametogenesis (2020)
    PANGAEA
    In:  Natural History Museum
    Details
    Publication Date: 2023-03-03
    Description: The collected samples of Geodia species were used to identify if they were reproductive and understand which genes are expressed during gametogenesis. Specifically, specimens fixed in glutaraldehyde solution, were processed for histological analysis to observe gametes in the sponge tissue. Once, we identified male, female (while in gametogenesis) and non-reproductive specimens, we used the RNAlater fixed samples to extract RNA from those specimens. Then, we prepared cDNA libraries, sequenced them with illumina nextseq and we did differential gene expression analysis in order to compare the expressed genes in male vs female specimens and vs non-reproductive specimens. The goal was to understand the molecular machinery of gametogenesis in sponges from an evolutionary point of view.
    Keywords: Agassiz Trawl; AGT; Area/locality; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Depth, bathymetric; Device type; Dredge, triangle; Event label; G. O. Sars (2003); gametogenesis; Geodia sp.; GS16A-202; GS2016109A; GS2016109A-06-ROV-01; GS2017110; GS2017110-09-ROV-6; GS2017110-23-ROV12; GS2017110-57-AGT-01; Hans Brattström; HB2016944; HB2016944_2; HB2016952; HB2016952_6; Investigator; Korsfjord; Kosterfjord; Latitude of event; Longitude of event; Nereus; Nereus20160405; Nereus20160405_ROV; Porifera; Remote operated vehicle; ROV; Sample code/label; Schultz Bank; Sex; Species; SponGES; Sula reef; TAD; Transcriptomics; Tromsøflaket
    Type: Dataset
    Format: text/tab-separated-values, 245 data points
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  • 3
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    Lithistids from the Seamounts of the Northeast Atlantic Ocean (2018)
    PANGAEA
    Details
    Publication Date: 2023-02-24
    Description: Supplementary Material 1: List of specimens analysed in this study with detailed information of the stations in which they were sampled. All specimens are deposited in the MNHN Paris.
    Keywords: Area/locality; BD; BEAM; Beam trawl; BIO; Biology; Campaign; Code; CP11; CP138; CP144; CP156; CP20; CP257; CP28; DATE/TIME; DE140; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Description; Device type; Dredge, benthos; DW128; DW129; DW130; DW139; DW148; DW159; DW16; DW182; DW184; DW188; DW202; DW203; DW21; DW241; DW242; DW246; DW247; DW25; DW254; DW258; DW263; DW265; DW27; DW274; DW277; DW279; DW281; DW63; EBS; Epibenthic sledge; Event label; Latitude of event; Le Noroit; Le Suroît; Longitude of event; marine sponges; Nor_CP11; Nor_CP20; Nor_CP28-1; Nor_CP28-2; Nor_CP99; Nor_DW16; Nor_DW21; Nor_DW25; Nor_DW27; Nor_DW63; Noroit_1988-09; Number of individuals; Species; Sponges; SponGES; Station label; Sur_CP138; Sur_CP144; Sur_CP156; Sur_CP257; Sur_DE140; Sur_DW128; Sur_DW129; Sur_DW130; Sur_DW139; Sur_DW148; Sur_DW159; Sur_DW182; Sur_DW184-2; Sur_DW188; Sur_DW202; Sur_DW203; Sur_DW241; Sur_DW242; Sur_DW246; Sur_DW247; Sur_DW254; Sur_DW258-1; Sur_DW258-2; Sur_DW263; Sur_DW265; Sur_DW274; Sur_DW277; Sur_DW279; Sur_DW281; Suroit_1993-01; Vessel
    Type: Dataset
    Format: text/tab-separated-values, 628 data points
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  • 4
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    Collection information of the genus Geodia from boreo-arctic North-Atlantic deep-sea sponge grounds (2020)
    PANGAEA
    In:  Natural History Museum
    Details
    Publication Date: 2023-03-03
    Description: Boreo-arctic sponge grounds are essential deep-sea structural habitats that provide important services for the ecosystem. These large sponge aggregations are dominated by demosponges of the genus Geodia (order Tetractinellida, family Geodiidae). However, little is known about the basic biological features of these species, such as their life cycle and dispersal capabilities. Here, we surveyed five deep-sea species of Geodia from the North Atlantic Ocean and studied their reproductive cycle and strategy using light and electron microscopy. We confirmed that these five species were oviparous and gonochoristic and that their reproductive season spanned similar periods: from late spring to early autumn. Concerning their reproductive strategy, the high abundance of lipid yolk observed in the female gametes could indicate both a necessity for rapid fuel during embryogenesis in the water column and increased buoyancy for drifting over longer times. Overall, the investment in reproduction was lower for all the surveyed species compared to similar shallow-water species. Given the present hazards that threaten sponge grounds, it becomes crucial to understand the processes behind the maintenance and regeneration of populations of keystone deep-sea species in order to predict the magnitude of human impacts and estimate their ability to recover. The information provided in this study will be useful for developing adequate conservation strategies for these vulnerable deep-sea habitats.
    Keywords: Agassiz Trawl; AGT; Area/locality; Campaign; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Device type; Dredge, triangle; Event label; G. O. Sars (2003); Geodia; GS16A-202; GS2016109A; GS2016109A-06-ROV-01; GS2017110; GS2017110-09-ROV-6; GS2017110-23-ROV12; GS2017110-41-ROV-19; GS2017110-57-AGT-01; GS2017110-68-ROV-25; GS2017110-74-ROV-26; Hans Brattström; HB2016944; HB2016944_2; HB2016952; HB2016952_6; Histology; Investigator; KB2017610; KB2017610_DRG_43; Korsfjord; Kosterfjord; Kosterfjord_March_2019; Kristine Bonnevie; Latitude of event; Longitude of event; Nereus; Nereus20160405; Nereus20160405_ROV; Nsvalbard_2011-09-22; Porifera; Remote operated vehicle; Reproduction; Rosemary_Bank_2011-09-11; Rosemary_Bank_2012-09-19; Rosemary_Bank_2015-09-20; Rosemary_Bank_2016-09-19; Rosemary_Bank_2016-09-20; Rosemary Bank; ROV; Sample ID; Schultz Bank; Sex; Species; SponGES; Sula reef; Svalbard; TAD; Tromsøflaket
    Type: Dataset
    Format: text/tab-separated-values, 810 data points
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  • 5
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    Collection data from 'lithistid' tetractinellid demosponges from the Tropical Western Atlantic (2020)
    PANGAEA
    Details
    Publication Date: 2023-02-24
    Description: Collection data of 'lithistid' tetractinellid demosponges (Porifera) from the Tropical Western Atlantic studied by Schuster et al. It includes collection dates, museum voucher numbers, collection# from the Bavarian State Collection for Palaeontology and Geology, Munich, Bavaria, Germany (SNSB-BSPG.#), sponge barcoding# submission (SBD#), field collection#, gear, locality, coordinates, depth, DNA concentration of DNA extract and genbank accession number for genes 28S and COI.
    Keywords: 2DREDGE_1992-07-15; 2DREDGE_1992-07-19; Accession number, genetics; Bahamas; Bay of Plenty; Bonaire; Cavalli Seamounts; CLELIA597; CLELIA598; CLELIA602; Code; Comment; Cruise/expedition; Cuba; Curacao; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Deepworker_2001-02-22; Deepworker_2001-02-26; Deepworker_2001-03-24; Demospongiae; Deoxyribonucleic acid; Depth, bottom/max; Depth, top/min; DEPTH, water; Device type; DIVER; Dredge; DRG; Dry Tortugas; DW1694; EBS; Epibenthic sledge; Florida; Florida Keys; Grenada; Guadaloupe; Honduras; Identification; Ilheus Selvagem; Indonesia; Jamaica; JohnsonSeaLink_1993-05-23; JohnsonSeaLink_35738; JSL-I-3006; JSLI-3586; JSLI-3596; JSLI-3598; JSLI-3600; JSLI-3601; JSLI-3602; JSLI-3603; JSLI-3607; JSL-I-3790; JSL-I-3791; JSL-I-3799; JSL-I-3803; JSL-I-3804; JSL-I-3805; JSL-I-3806; JSL-I-3807; JSL-I-3810; JSL-I-3811; JSL-I-3812; JSL-I-3813; JSL-I-3816; JSL-I-3819; JSL-I-3825; JSL-I-3987; JSL-I-3994; JSL-I-3995; JSL-I-4000; JSL-I-4098; JSL-I-4099; JSL-I-4106; JSL-I-4107; JSL-I-4109; JSL-I-4111; JSLI-4113; JSL-I-4114; JSLI-4497; JSLI-4498; JSLI-4499; JSLI-4500; JSLI-4501; JSLI-4503; JSLI-4506; JSLI-4507; JSLI-4508; JSLI-4511; JSLI-4514; JSLI-4515; JSLI-4516; JSLI-4519; JSL-I4614; JSL-I4616; JSL-I4617; JSLII-1702; JSLII-1814; JSLII-1817; JSL-II-2722; JSL-II-2723; JSL-II-2724; JSL-II-2725; JSL-II-2727; JSL-II-2729; JSL-II-2733; JSL-II-2734; JSL-II-2735; JSLII-2791; JSLII-2797; JSLII-2798; JSLII-3007; JSLII-3008; JSLII-3009; JSLII-3011; JSLII-3013; JSLII-3014; JSLII-3018; JSLII-3019; JSLII-3020; JSLII-3021; JSLII-3023; JSLII-3025; JSLII-3026; JSLII-3027; JSLII-3028; JSLII-3029; JSLII-3031; JSLII-3032; JSLII-3035; JSLII-3036; JSLII-3037; JSLII-3041; JSL-II-3203; JSL-II-3204; JSL-II-3205; JSL-II-3209; JSL-II-3211; JSL-II-3212; JSL-II-3214; JSL-II-3218; JSL-II-3219; JSL-II-3223; JSL-II-3224; JSLII-3228; JSLII-3667; JSLII-3668; KAH_1999-04-19; KAH_1999-04-21; Kalbarri; Karmadec Islands; Kermadec Ridge; Kraken2-10; Kraken2-19; LATITUDE; lithistid; Location; LONGITUDE; Martinique; Mauritius; New Zealand; Ocean and sea region; Palau; Panama; Papua New Guinea; Philippines; Puerto Rico; Remote operated vehicle; rock sponges; ROV; ROVCherokeeDive#11; ROVCherokeeDive#7; Sabah; Sample_1966-10-10; Sample_1975-02-05; Sample_1975-07-25; Sample_1982-03-22; Sample_1989-11-27; Sample_1994-11-31; Sample_1998-04-03; Sample_1999-06-05; Sample_2000-11-04; Sample_2002-04-17; Sample_2002-04-18; Sample_2002-04-19; Sample_2004-11-13; Sample_2010-06-06; Sample_2012-04-18; Sample_2012-04-22; Sample_2012-04-23; Sample_2012-04-27; Sample_2012-10-18; Sampling by diver; SCUBA_1992-10-23; SCUBA_1993-05-19; SCUBA_1993-05-22; SCUBA_1993-05-25; SCUBA_1993-05-28; SCUBA_1993-08-19; SCUBA_1993-08-21; SCUBA_1993-08-23; SCUBA_1993-09-05; SCUBA_1993-10-19; SCUBA_1993-11-05; SCUBA_1994-02-08; SCUBA_1994-02-09; SCUBA_1994-07-21; SCUBA_1994-07-22; SCUBA_1995-03-03; SCUBA_1996-03-29; SCUBA_1996-06-05; SCUBA_1996-06-08; SCUBA_1996-11-12; SCUBA_1996-12-11; SCUBA_1997-04-16; SCUBA_1997-11-06; SCUBA_1997-11-07; SCUBA_1998-06-08; SCUBA_1998-06-09; SCUBA_1999-11-13; SCUBA_2000-05-14; SCUBA_2000-05-16; SCUBA_2000-11-16; SCUBA_2002-01-12; SCUBA_2002-11-24; SCUBA_2003-06-26; SCUBA_2003-07-03; SCUBA_2006-10-23; SCUBA_2008-07-25; SCUBA_2008-11-11; SCUBA_36664; SCUBA_36666; SCUBA_36667; SCUBA/SNOR_32693; Sled-NIWA_2003-05-21; Species; SponGES; SS0507/062; SS0507/116; SS0507/161; SS1005/102; St. Vincent; Station label; SUB; Submersible; Tetractinellida; Turks and Caicos; Vanuatu; Vietnam; Wanganella Bank; Western Atlantic; W-Sanibel Island
    Type: Dataset
    Format: text/tab-separated-values, 3514 data points
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  • 6
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    Collection data and Genbank numbers of Lamellomorpha and Poecillastra species from New Zealand (2018)
    PANGAEA
    In:  Supplement to: Kelly, Michelle; Cárdenas, Paco; Rush, Nicola; Sim-Smith, Carina; MacPherson, Diana; Page, Mike; Bell, Lori J (2019): Molecular study supports the position of New Zealand endemic genus Lamellomorpha in family Vulcanellidae (Demospongiae, Tetractinellida, Astrophorina), with the description of three new species. European Journal of Taxonomy, 506, 1-25, https://doi.org/10.5852/ejt.2019.506
    Details
    Publication Date: 2023-02-24
    Description: Collection data and Genbank numbers (COI and 28S (C1-C2)) for New Zealand specimens of Lamellomorpha and Poecillastra studied by Kelly et al.
    Keywords: Accession number, genetics; Area/locality; BP_A714; BP_A715; BP_A751; CH_B184; Collection; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Identification; Investigator; KAH0606; KAH0606/D3; Kaharoa; LATITUDE; LONGITUDE; MB_I711; MB_W427; MB_W435; MB_W446; MB_W447; MB_W448; MB_W452; MB_W454; SL_D39; South Pacific Ocean; Species; SponGES; Station label; TAN0803; TAN0803/48; TAN0803/69; TAN1105; TAN1105/43; Tangaroa; Tasman Sea; TKI_B93; TKI_Z15944; TKI_Z9678; TKI_Z9686; TKI_Z9699; TKI_Z9710; TRIP3072/8; Type
    Type: Dataset
    Format: text/tab-separated-values, 267 data points
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  • 7
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    Collection data of Tethya irisae sp. nov. and comparative material (2018)
    PANGAEA
    In:  Supplement to: Sorokin, Shirley J; Ekins, Merrick; Yang, Qi; Cárdenas, Paco (2019): A new deep-water Tethya (Porifera, Tethyida, Tethyidae) from the Great Australian Bight and an updated Tethyida phylogeny. European Journal of Taxonomy, 529, https://doi.org/10.5852/ejt.2019.529
    Details
    Publication Date: 2023-07-17
    Description: A new species of Tethya irisae sp. nov. is described from 1000 m depth on the continental slope of the Great Australian Bight (GAB), southern Australia. Three molecular markers were obtained from one specimen: COI, 28S (D3-D5) and ITS1-5.8S-ITS2.
    Keywords: Accession number, genetics; Andaman Sea; Area/locality; BEAM; Beam trawl; BIO; Biology; BMNH1957_7_15_1; BPZ_1000; Collection; Comment; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; G_9069; Great Australian Bight; IN2015_C01; IN2015_C01_110; IN2015_C01_114; IN2015_C02; IN2015_C02_131; IN2015_C02_167; IN2015_C02_196; IN2015_C02_292; Investigator (2014); LATITUDE; LONGITUDE; Name; New South Wales, Australia; New Zealand; Reference/source; Species; SponGES; Station label; Type; UAZA9_7; UAZA9_8; Z5074
    Type: Dataset
    Format: text/tab-separated-values, 98 data points
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  • 8
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    Collection data, 16S microbiome and metabolome of Geodia barretti, Stryphnus fortis and Weberella bursa, in the Davis Strait (2019)
    PANGAEA
    Details
    Publication Date: 2023-11-11
    Description: Collection data of the marine sponge specimens studied; three species: Geodia barretti, Stryphnus fortis and Weberella bursa. Collection data includes locality, depth, salinity, bottom temperature, gear, date, cruise and station# and a collection number for every specimen (DFO Canada collections). NCBI SRA# of the 16S gene amplicon sequencing of their microbiome. Numbers of the UPLC-HRMS runs (four different modes for every specimen: HILIC+, HILIC-, RP+ and RP-). The raw UPLC-HRMS datasets are deposited in the repository metabolights (www.ebi.ac.uk/metabolights/MTBLS1388). QC runs are Quality Control runs for the UPLC-HRMS experiment (also deposited in metabolights).
    Keywords: Accession number, genetics; Code; Cruise/expedition; DATE/TIME; Deep-sea; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Event label; Gear; Geodia barretti; Identification; LATITUDE; LONGITUDE; marine sponges; metabolomics; microbiome; PAA2011007; PAA2011007_Gb10; PAA2011007_Gb15; PAA2011007_Gb20; PAA2011007_Gb21; PAA2011007_Gb4; PAA2011007_Gb6; PAA2011007_Sf11; PAA2011007_Sf14; PAA2011007_Sf4; PAA2011007_Sf7; PAA2011007_Wb10; PAA2011007_Wb12; PAA2011007_Wb14; PAA2011007_Wb15; PAA2011007_Wb2; PAA2011007_Wb5; PAA2011007_Wb9; PAA2013008; PAA2013008_Gb1; PAA2013008_Gb12; PAA2013008_Gb14; PAA2013008_Gb18; PAA2013008_Gb19; PAA2013008_Gb2; PAA2013008_Gb8; PAA2013008_Gb9; PAA2013008_Sf10; PAA2013008_Sf13; PAA2013008_Sf2; PAA2013008_Sf6; PAA2013008_Wb1; PAA2013008_Wb11; PAA2013008_Wb16; PAA2013008_Wb17; PAA2013008_Wb4; PAA2013008_Wb8; PAA2014007; PAA2014007_Gb13; PAA2014007_Gb3; PAA2014007_Gb5; PAA2014007_Sf1; PAA2014007_Sf12; PAA2014007_Sf15; PAA2014007_Sf3; PAA2014007_Sf5; PAA2014007_Wb13; PAA2014007_Wb3; PAA2014007_Wb6; PAA2014007_Wb7; PAA2015007; PAA2015007_Gb11; PAA2015007_Gb17; PAA2015007_Gb7; PAA2015007_Sf8; PAA2015007_Sf9; Paamiut; Salinity; Set; Species; SponGES; Stryphnus fortis; Temperature, water; Weberella bursa; Year of observation
    Type: Dataset
    Format: text/tab-separated-values, 739 data points
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  • 9
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    Supplementary information and georeferenced photomosaic of the Chapopote bubble site during RV METEOR cruise M114/2 (2019)
    PANGAEA
    In:  Supplement to: Rubin-Blum, Maxim; Antony, Chakkiath Paul; Sayavedra, Lizbeth; Martínez-Pérez, Clara; Birgel, Daniel; Peckmann, Jörn; Wu, Yu-Chen; Cárdenas, Paco; MacDonald, Ian R; Marcon, Yann; Sahling, Heiko; Hentschel, Ute; Dubilier, Nicole (2019): Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts. The ISME Journal, https://doi.org/10.1038/s41396-019-0346-7
    Details
    Publication Date: 2023-11-20
    Description: Sponges host a remarkable diversity of microbial symbionts, however, the benefit their microbes provide is rarely understood. Here, we describe two new sponge species from deep-sea asphalt seeps and show that they live in a nutritional symbiosis with methane-oxidizing (MOX) bacteria. Metagenomics and imaging analyses revealed unusually high amounts of MOX symbionts in hosts from a group previously assumed to have low microbial abundances. These symbionts belonged to the Marine Methylotrophic Group 2 clade. They are host-specific and likely vertically transmitted, based on their presence in sponge embryos and streamlined genomes, which lacked genes typical of related free-living MOX. Moreover, genes known to play a role in host–symbiont interactions, such as those that encode eukaryote-like proteins, were abundant and expressed. Methane assimilation by the symbionts was one of the most highly expressed metabolic pathways in the sponges. Molecular and stable carbon isotope patterns of lipids confirmed that methane-derived carbon was incorporated into the hosts. Our results revealed that two species of sponges, although distantly related, independently established highly specific, nutritional symbioses with two closely related methanotrophs. This convergence in symbiont acquisition underscores the strong selective advantage for these sponges in harboring MOX bacteria in the food-limited deep sea.
    Keywords: asphalt; Center for Marine Environmental Sciences; Chapopote; Gulf of Mexico; LAPM; MARUM; Mosaic; Photomosaic; seep; TAR
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 10
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    Supplementary information (2019)
    PANGAEA
    Details
    Publication Date: 2023-11-20
    Keywords: asphalt; Center for Marine Environmental Sciences; Chapopote; File content; File format; File name; File size; Gulf of Mexico; LAPM; MARUM; Mosaic; Photomosaic; seep; TAR; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 20 data points
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