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  • 11
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    Unknown
    Collecting information and identification of New England Seamount Geodia species (2016)
    PANGAEA
    In:  Supplement to: Cárdenas, Paco; Moore, Jon A (2017): First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens. Marine Biodiversity, 12 pp, https://doi.org/10.1007/s12526-017-0775-3
    Details
    Publication Date: 2024-03-03
    Description: We report the first records of the sponge genus Geodia (Demospongiae, Tetractinellida, Geodiidae) from the New England Seamounts and Muir Seamount, at lower bathyal depths. Nine specimens collected between 2000 and 2005 belong to two boreal species (Geodia macandrewii and Geodia barretti) and a temperate species (Geodia megastrella). These records extend the distributions of these deep-sea amphi-Atlantic species to the west. Most of these specimens were originally fixed in formalin, which substantially degraded the DNA. We nonetheless managed to sequence two cytochrome c oxidase subunit I (COI) mini-barcodes: the universal mini-barcode at the 5' end of the Folmer barcode (130 bp) and a newly proposed mini-barcode at the 3' end of the Folmer barcode (296 bp). These mini-barcodes unambiguously confirmed our identifications. As an additional test, we also successfully sequenced these two mini-barcodes from the holotype of G. barretti, collected in 1855. We conclude by advocating the use of mini-barcodes on formalin-fixed or old specimens with degraded DNA.
    Keywords: Alv_3886; Alv_3904; ALV-3885; ALV-3887; ALV-4162; ALVIN; Area/locality; AT07-35; AT08-01; AT12-01; Atlantis (1997); Campaign; Collection; DATE/TIME; DE00-11; DE00-11_17; DE02-06; DE02-06_46; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Delaware II; Description; Event label; Identification; Investigator; LATITUDE; LONGITUDE; New England Mountains; Norway; OT; Otter trawl; RB04-04_MAN708; RB200404B; Remote operated vehicle; Ronald H. Brown; ROV; Sample comment; Sample elevation; South Atlantic Ocean; Species; SponGES; Submersible Alvin; Treatment; Uniform resource locator/link to metadata file; Vikna_Is
    Type: Dataset
    Format: text/tab-separated-values, 95 data points
    Location Call Number Expected Availability
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    DATA PANGAEA
  • 12
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    Collection data and Genbank accession numbers of Stelligeridae revision (2019)
    PANGAEA
    In:  Supplement to: Morrow, Christine; Cárdenas, Paco; Boury-Esnault, Nicole; Picton, Bernard; McCormack, Grace; van Soest, Rob; Collins, Allen; Redmond, Niamh; Maggs, Christine; Sigwart, Julia D; Allcock, Louise (2019): Integrating morphological and molecular taxonomy with the revised concept of Stelligeridae (Porifera: Demospongiae). Zoological Journal of the Linnean Society, zlz017, https://doi.org/10.1093/zoolinnean/zlz017
    Details
    Publication Date: 2024-01-27
    Description: Collection data and Genbank accession numbers of demosponge specimens studied by Morrow et al. It includes species belonging to several families: Stelligeridae mainly but also some Heteroxyidae, Bubaridae, Desmoxyidae, Hymedesmiidae and Hemiasterallidae. These species come essentially from the North Atlantic (shallow and deep waters), with a few coming from the Indian Ocean and the Pacific.
    Keywords: 64PE229; 64PE229_BX30; 64PE229_BX33A; 64PE229_BX42A; 64PE238; 64PE238_BX173; Accession number, genetics; Antea; Area/locality; ARK-XXII/1a; Barents Sea; Bay of Biscay; BC; BIOMAGLO; BIOMAGLO_DW4812; BIOSYS/HERMES; BIOSYS2006_VG20-1/11; Box corer; Burma Sea, Andaman Sea; Calypso; CALYPSO_1954; Campaign; CE10004; CE10004_108; CE10004_7; CE10004_70; CE13008; CE13008_15; CE13008_36; CE13008_37; Celtic Explorer; Celtic Sea; Collection; Coral Sea; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Device type; DIVER; Dredge; DRG; EBS; English Channel; Epibenthic sledge; Family; Gulf of Aden; Gulf of Carpentaria; GuyanaShelfExp; GuyanaShelfExp_M97; HAND; Indian Ocean; Investigator; Irish Sea; JAGO; Jenissej_1875_st30a; L Atalante; LATITUDE; Ligure Sea; LONGITUDE; Luymes; Moundforce_2004_43; Moundforce 2004; North Sea; Norwegian Sea; PAMELA-MOZ01; PAMELA-MOZ01_DW01; PAoM_1895_578; PAoM_1895_584; PAoM_1895_597; PAoM_1895_616; PAoM_1896_702; PAoM_1896_719; PAoM_1897_869; PAoM_1897_899; PAoM_1901_1116; PAoM_1901_1242; PAoM_1902_1338; PAoM_1902_1344; PAoM_1902_1349; PAoM_1902_1420; PAoM_1905_2034; PAoM_1905_2210; PAoM_1911_3137; PAoM_1911_3144; PAoM_1911_3150; Pelagia; Polarstern; Porcupine_1868; PS70; PS70/014-4; PS70/017-1; PS70/040-10; Reference/source; Remote operated vehicle; ROV; Sample comment; Sampling by diver; Sampling by hand; Scotland Sea; SCUBA_1981-07-04; SCUBA_1982-06-08; SCUBA_1982-06-15; SCUBA_1983-07-21; SCUBA_1985; SCUBA_2005-09-06; SCUBA_2006-08-25; SCUBA_2007-04-10; SCUBA_2008-02-14_St1; SCUBA_2008-06-24; SCUBA_2008-06-30; SCUBA_2008-07-02; SCUBA_2009-07-29; SCUBA_2009-08-03; SCUBA_2009-08-04; SCUBA_2010-06-23; SCUBA_2010-06-28; SCUBA_2018-03-28; Sealark_1905-07-03; Sealark_1905-10-20; Skagerrak; South Atlantic Ocean; South Pacific Ocean; Species; SponGES; Submersible JAGO; Surface description; Tirreno Sea; TRAWL; Trawl net; Type; Unknown_1884_PortPhillipH; Unknown_1933-10-12; Unknown_1960_st41; Unknown_1960_st57; Unknown_1977-06-02_st181; Unknown_1994-09-02; Unknown_2003-05-24; Unknown_2008-06-24; Unknown_2009-07-30; Unknown_2010-09-07; Unknown_Banyuls; Unknown_Boue_Tirlipois; Unknown_CALYPSO_1954; Unknown_GalwayBay; Unknown_Glenan; Unknown_Ile-de-Batz; Unknown_Investigator_st532; Unknown_Shetlands; Unknown_Skagerrak; Unknown_SMNH1229; Unknown_Takatu-Pt; Unknown_Trondheim; van Veen Grab; VGRAB; Western Basin
    Type: Dataset
    Format: text/tab-separated-values, 729 data points
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    DATA PANGAEA
  • 13
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    Occurrence records of Geodia species (Porifera, Demospongiae, Tetractinellida) from the North Atlantic and Arctic Oceans (2021)
    PANGAEA
    Details
    Publication Date: 2024-02-02
    Description: This dataset contains occurrence records (i.e., species name, latitude, longitude, depth (where available), and metadata) for six species of the demosponge genus Geodia Lamarck, 1815, belonging to the Geodiidae family: Geodia atlantica (Stephens, 1915); Geodia barretti Bowerbank, 1858; Geodia macandrewii Bowerbank, 1858; Geodia phlegraei (Sollas, 1880); Geodia hentscheli Cárdenas et al. 2010; and Geodia parva Hansen, 1885. The records fall in the North Atlantic and Arctic Oceans, and are used/described in the linked article by Roberts et al. (2021). Note that the dataset provided has not been subjected to any of the filtering stages applied in that manuscript for the purposes of various novel biogeographical analyses (i.e., it is original and complete), and the taxonomic identifications have been rigorously checked (as described therein). Definitions of institution abbreviations used in the 'Museum Specimen / Picture Information' column of the dataset spreadsheet have been provided in an accompanying table (see Comment field below). Where records are derived from earlier literature sources, full references for citations given in the 'Campaign / Source' column (and further general information on many of the records) may be found in the articles by Cárdenas et al. (2010; 2013) and Cárdenas & Rapp (2015). An earlier version of this dataset may be accessed at the DRYAD repository: Cárdenas P, Rapp HT, Klitgaard AB, Best M, Thollesson M, Tendal OS (2013), Data from: Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region, Dryad, Dataset, doi:10.5061/dryad.td8sb
    Keywords: 87PA0028; 87PA0067; 87PA0078; 92PA0160002; 92PA0160005; 92PA0160014; 92PA0160028; 92PA0160050; 92PA0160052; 94PA0090001; 94PA0090002; 94PA0090009; 94PA0090010; 94PA0090019; 94PA0090020; 94PA0090026; 94PA0090039; 94PA0090041; 94PA0090043; 94PA0090045; 94PA0090049; 94PA0090062; Agassiz Trawl; AGT; Arctic Ocean; ARK-VII/2; ARK-XXII/1a; Barents Sea; BEAM; Beam trawl; BIODEEP2007_Dredge2; BIODEEP2007_ROV10; BIODEEP2007_ROV9; BIOFAR_St117; BIOFAR_St119; BIOFAR_St120; BIOFAR_St122; BIOFAR_St234; BIOFAR_St279; BIOFAR_St287; BIOFAR_St297; BIOFAR_St298; BIOFAR_St375; BIOFAR_St379; BIOFAR_St389; BIOFAR_St43; BIOFAR_St451; BIOFAR_St452; BIOFAR_St486; BIOFAR_St487; BIOFAR_St498; BIOFAR_St526; BIOFAR_St530; BIOFAR_St531; BIOFAR_St535; BIOFAR_St540; BIOFAR_St550; BIOFAR_St69; BIOFAR_St734; BIOFAR_St756; BIOFAR_St89; BIOFAR_St901; BIOICE_St2022; BIOICE_St2023; BIOICE_St2218; BIOICE_St2292; BIOICE_St2293; BIOICE_St2368; BIOICE_St2374; BIOICE_St2499; BIOICE_St2501; BIOICE_St2516; BIOICE_St2518; BIOICE_St2700; BIOICE_St2728; BIOICE_St2747; BIOICE_St2756; BIOICE_St2768; BIOICE_St2769; BIOICE_St2923; BIOICE_St2926; BIOICE_St2928; BIOICE_St3227; BIOICE_St3659; BIOICE_St3661; BIOSKAG2006_St20; BIOSYS2006_DR182; BIOSYS2006_VG20-1; Blacker1957_11; Blacker1957_130; Blacker1957_131; Blacker1957_14; Blacker1957_16; Blacker1957_164; Blacker1957_165; Blacker1957_168; Blacker1957_20; Blacker1957_21; Blacker1957_22; Blacker1957_24; Blacker1957_25; Blacker1957_27; Blacker1957_28; Blacker1957_33; Blacker1957_35; Blacker1957_36; Blacker1957_44; Blacker1957_45; Blacker1957_46; Blacker1957_53; Blacker1957_55; Blacker1957_56; Blacker1957_60; Blacker1957_61; Blacker1957_62; Blacker1957_68; Blacker1957_75; Blacker1957_8; Blacker1957_80; Blacker1957_81; Blacker1957_84; Blacker1957_9; Blacker1957_94; BMT19; Boury-Esnaultetal1994_CP62; Boury-Esnaultetal1994_CP63; Boury-Esnaultetal1994_CP92; Boury-Esnaultetal1994_CP98; Bowerbank1872a_Vikna; Bowerbank1872aPlateXI_Vikna; Brattholmen_St230407; Breitfuss1930_St1237; Breitfuss1930_St1347; Breitfuss1930_St1385; Burton1934_St548; Burton1959_EIceland; Burton1959_SEIceland; Campaign; CD80_St178; CD80_St18; CD80_St91; CE13008; CE13008_ROV32; CE2008-11_M11GHaul22; CE2008-11_M11GHaul23; Celtic Explorer; Celtic Sea; CENTOBBiogasII_DS33; CGB2011_11c-16-DR01; CGB2011_11c-19-ROV05; CGB2011_11c-30-DR05; CGB2011_11c-31-DR06; Comment; CorSeaCan_B12_CG_ACH_P01_20100809; CorSeaCan_B13_MOI-ACH-P06; CV13012_51; Dana_St6001; Davis Strait; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Depth, bottom/max; Depth, top/min; DEPTH, water; Dyrelivihavet2008_SandsfjordRogaland; E17044_SP17E44001; EBS; EcosystemBarentsSea2007_St2562; Epibenthic sledge; Event label; FRVScotia2012_S12_469; FRVScotia2012_S12/469; FRVScotia2012_S12-469; G. O. Sars (2003); Giant box corer; GKG; Greenland Sea; GS06/112; GS112_BMT19; GS14; GS14-AGT03; GS14-AGT07; GS14-DR02; GS14-DR09; GS14-DR12; H2DEEP2008_ROV5; HakonMosby_St237; HakonMosby_St242; HakonMosby_St245; HakonMosby_St86072701; HakonMosby_St93060602; HakonMosby_St93060612; HakonMosby_St93060613; HakonMosby_St93061106; Hentschel1929_St40; Hentschel1929_St41; Hentschel1929_St42; Howelletal2010_WSC11; Howelletal2010_WSCE10B; Howelletal2010_WSCE3; Howelletal2010_WSCE4; HUD2007-025_DiveR1059; HUD2010-029; HUD2010-029_R1335; HUD2010-029_R1336-07; HUD2010-029_R1339-10; HUD2010-029_R1340-12; HUD2010-029_R1340-4; HUD2010-029_R1341-18; HUD2013/29; HUD2013-029_DS1-I; Hudson; Iceland Sea; Identification; IngolfExpdt_St1; IngolfExpdt_St125; IngolfExpdt_St21; IngolfExpdt_St78; IngolfExpdt_St90; IngolfExpdt_St92; JAGO; Kara Sea; Kingstonetal1979_LabradorCoast; Koltun1964_St1; Koltun1964_St10; Koltun1964_St11; Koltun1964_St26; Koltun1964_St46; Koltun1964_St7; Koltun1964_St8; Koltun1964_St9; Koltun1966_NofFranzJosephLand; Koltun1966_NofKaraSea; Koltun1966_NWofLaptevSea; Labrador Sea; Langenuen_SteinnesetSt31; Laptev Sea; LATITUDE; LONGITUDE; Lundbeck1909_Angmagsalik; Lynch_St1971; Lynch_St1972; Lynch_St1973; Lynch_St721008; Lysefjord_Uksen; M85/3; M85/3_1123; M85/3_1132; M85/3_1136; M85/3_1219; M85/3_1223; MA0200057_St90; MagnusHeinason_St150990; MAR310_St1; Mareano_StR228-12; Mareano_StR262VL282; Mareano_StR828; Mareano_StR863; Mareano2009_StR469VL491; Mareano2011_StR729VL756; Mareano2011_StR731VL759; Mareano2011_StR744VL772; Mareano2011_StR758VL786; MAR-Eco2004_St50-373; MAR-Eco2004_St70_385; MAR-Eco2004_St70-385; MAR-Eco2004_St72-386; MedSeaCan_B7_MG_PO2_20090523; MedSeaCan_B7_PA_ACH_P02_20090519; Meteor (1986); More2005_St46; MULT; Multiple investigations; NEREIDA0609_BC89; NEREIDA0710_BC237; Nereida2009-2010_BC04; Nereida2009-2010_DR04-001; Nereida2009-2010_DR07-025; Nereida2009-2010_DR10; Nereida2009-2010_DR12; Nereida2009-2010_DR18; Nereida2009-2010_DR19; Nereida2009-2010_DR20; Nereida2009-2010_DR22; Nereida2009-2010_DR23; Nereida2009-2010_DR24; Nereida2009-2010_DR3; Nereida2009-2010_DR32; Nereida2009-2010_DR38; Nereida2009-2010_DR4; Nereida2009-2010_DR6; Nereida2009-2010_DR64; Nereida2009-2010_DR66; Nereida2009-2010_DR7; Nereida2009-2010_DR70; Nereida2009-2010_DR70_BOTTOM; Nereida2009-2010_DR74; Nereida2009-2010_DR74_BOTTOM; North Greenland Sea; North Sea; Norwegian Sea; PA2010-009_Set075; PA2010-009_Set104; PA2010-009_Set105; PA2010-009_Set108; PA2010-009_Set109; PA2010-009_Set111; PA2010-009_Set113; PA2010-009_Set114; PA2010-009_Set115; PA2010-009_Set116; PA2010-009_Set126; PA2010-009_Set141; PA2010-009_Set155; PA2010-009_Set156; PA2010-009_Set157; PA2010-009_Set159; PA2010-009_Set160; PA2010-009_Set161; PA2010-009_Set162; PA2010-009_Set163; PA2010-009_Set164; PA2010-009_Set167; PA2010-009_Set168; PAA2011007; PAA2011007_127_39; PAA2011007_225_114; PAA2011007_255_126; PAA2011007_262_128; PAA2011007_533_23; PAA2011007_634_139; PAA2013008; PAA2013008_157_44; PAA2013008_169_46; PAA2013008_174_47; PAA2013008_176_48; PAA2013008_177_50; PAA2013008_302_141; PAA2013008_305_142; PAA2013008_31_10; PAA2014007; PAA2014007_278_125; PAA2014007_286_127; PAA2014007_321_136; PAA2014007_514_152; PAA2015007; PAA2015007_126_32; PAA2015007_289_60; PAA2015007_299_62; PAA2015007_303_64; Paamiut; Polarstern; PS17; PS17/223; PS70; PS70/002-2; PS70/006-1; PS70/014-4; PS70/015-1; PS70/016-1; PS70/027-1; PS70/040-4; RVMichaelSars_St102; RVMichaelSars_St76; RVMichaelSars_St85; S10176_SP10176001; S11073_SP11073001; S11471_SP11471001; S12135_SP12135001; S12444_SP12444001; S12446_SP12446001; S12447; S15A13; S16185_SP16185001; S16379_SP16379003; S16A03_SP16A03017; S16A03_SP16A03029; S16A03_SP16A03039; S16A03_SP16A03041; S18A02; S18A03; Scotland Sea; ShinkaiMaru_St004; ShinkaiMaru_St109; ShinkaiMaru_St110; ShinkaiMaru_St15; ShinkaiMaru_St18; ShinkaiMaru_St1976; ShinkaiMaru_St21; ShinkaiMaru_St26; ShinkaiMaru_St29; ShinkaiMaru_St3; ShinkaiMaru_St32; ShinkaiMaru_St43; ShinkaiMaru_St50; ShinkaiMaru_St63; ShinkaiMaru_St70; ShinkaiMaru_St79; ShinkaiMaru_St9; ShinkaiMaru1987_St104; ShinkaiMaru1987_St67; Skagerrak; South Atlantic Ocean; Species; SponGES; St89SI0240086; Station label; Submersible JAGO; SwedishArcticExp1871_St37; T0406066; T8903301; T8905093; T8905125; T8905127; T8905185; T9405259; T9405264; T9405276; T9405305; T9405315; T9405317; T9406031; T9406032; T9406036; T9406066; ThalassaZ_Z407; ThalassaZ_Z408; Traena Deep; Trollholmflua; Tromso_Haugbernes; Western Basin; WH_St569; WH47566; WH47572; ZoolPolarExp1900_St30
    Type: Dataset
    Format: text/tab-separated-values, 2307 data points
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  • 14
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    No longer Demospongiae: Homoscleromorpha formal nomination as a fourth class of Porifera (2011)
    Springer
    Details
    Publication Date: 2011-08-12
    Print ISSN: 0018-8158
    Electronic ISSN: 1573-5117
    Topics: Biology
    Published by Springer
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  • 15
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    Demosponge steroid biomarker 26-methylstigmastane provides evidence for Neoproterozoic animals (2018)
    Springer Nature
    Details
    Publication Date: 2018-10-15
    Electronic ISSN: 2397-334X
    Topics: Biology
    Published by Springer Nature
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  • 16
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    Sources of C30 steroid biomarkers in Neoproterozoic–Cambrian rocks and oils (2019)
    Springer Nature
    Details
    Publication Date: 2019-11-25
    Electronic ISSN: 2397-334X
    Topics: Biology
    Published by Springer Nature
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  • 17
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    First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens (2017)
    Springer
    Details
    Publication Date: 2017-08-25
    Print ISSN: 1867-1616
    Electronic ISSN: 1867-1624
    Topics: Biology
    Published by Springer
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  • 18
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    Evolution of group I introns in Porifera: new evidence for intron mobility and implications for DNA barcoding (2017)
    BioMed Central
    Details
    Publication Date: 2017-03-20
    Electronic ISSN: 1471-2148
    Topics: Biology
    Published by BioMed Central
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  • 19
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    Proposal for a revised classification of the Demospongiae (Porifera) (2015)
    BioMed Central
    Details
    Publication Date: 2015-04-01
    Electronic ISSN: 1742-9994
    Topics: Biology
    Published by BioMed Central
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  • 20
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    The Molecular Machinery of Gametogenesis in Geodia Demosponges (Porifera): Evolutionary Origins of a Conserved Toolkit across Animals (2020)
    Oxford University Press
    Details
    Publication Date: 2020-07-16
    Description: All animals are capable of undergoing gametogenesis. The ability of forming haploid cells from diploid cells through meiosis and recombination appeared early in eukaryotes, whereas further gamete differentiation is mostly a metazoan signature. Morphologically, the gametogenic process presents many similarities across animal taxa, but little is known about its conservation at the molecular level. Porifera are the earliest divergent animals and therefore are an ideal phylum to understand evolution of the gametogenic toolkits. Although sponge gametogenesis is well known at the histological level, the molecular toolkits for gamete production are largely unknown. Our goal was to identify the genes and their expression levels which regulate oogenesis and spermatogenesis in five gonochoristic and oviparous species of the genus Geodia, using both RNAseq and proteomic analyses. In the early stages of both female and male gametogenesis, genes involved in germ cell fate and cell-renewal were upregulated. Then, molecular signals involved in retinoic acid pathway could trigger the meiotic processes. During later stages of oogenesis, female sponges expressed genes involved in cell growth, vitellogenesis, and extracellular matrix reassembly, which are conserved elements of oocyte maturation in Metazoa. Likewise, in spermatogenesis, genes regulating the whole meiotic cycle, chromatin compaction, and flagellum axoneme formation, that are common across Metazoa were overexpressed in the sponges. Finally, molecular signals possibly related to sperm capacitation were identified during late stages of spermatogenesis for the first time in Porifera. In conclusion, the activated molecular toolkit during gametogenesis in sponges was remarkably similar to that deployed during gametogenesis in vertebrates.
    Print ISSN: 0737-4038
    Electronic ISSN: 1537-1719
    Topics: Biology
    Published by Oxford University Press
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