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  • 1
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 80 (1990), S. 265-272 
    ISSN: 1432-2242
    Keywords: Maize ; Chromosome banding ; G-banding method ; Enzymatic maceration ; Image analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary It was demonstrated that G-bands are unequivocally present in plant chromosomes, in contrast to what had been formerly believed by plant cytologists. Maize chromosomes prepared by an enzymatic maceration method and treated with trypsin or SDS showed clear G-bands spreading along the chromosomes. The most critical point during the G-banding procedures was the post-fixation with glutaraldehyde solution. Banding patterns were processed by using the chromosome image analyzing system and a clearer image was obtained. Gbanding technique and the image manipulation method described here can be applied to many plant species, and would contribute new information in the field of plant cytology and genetics.
    Type of Medium: Electronic Resource
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  • 2
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 72 (1986), S. 27-32 
    ISSN: 1432-2242
    Keywords: Chromosome ; Karyotyping ; Rye ; Image analysis ; Computer system
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary A chromosome image analyzing system (CHIAS) has been developed especially for plant chromosomes. A standard karyotyping method using CHIAS is also described. The characteristics of the CHIAS are as follows: 1) the main objects of the analysis are plant chromosomes, 2) it constructs a man-machine interactive system to put researchers' decisions into the analytical process, 3) it can automate the routine part of an analysis as much as possible, and 4) it digitizes the image information of chromosomes and analyzes them. Software for karyotype analysis of plant chromosomes has been developed. Thus, in the case of rye chromosomes, it is possible to get quantitative data for all chromosomes and a karyogram within 25 min.
    Type of Medium: Electronic Resource
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 81 (1991), S. 589-596 
    ISSN: 1432-2242
    Keywords: Rice ; Chromosome map ; Ideogram ; Image analysis ; Condensation pattern
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Rice somatic chromosomes were completely identified and quantitatively mapped based on an image parameter, condensation pattern (CP), or a chromosomal density profile determined by imaging methods. The CP corresponds to the compactness of the chromatin fibers along the chromatid, which is characteristic in small plant chromosomes such as rice chromosomes at the mitotic pro-metaphase stage. The standard CP for every chromosome was obtained by averaging 60 CPs from 30 chromosome spreads. Each standard CP exhibited a characteristic pattern of the chromosome, which enabled it to be distinguished from the other chromosomes. An ideogram based on the numerical data and the standard CP was established. The chromosomal address was also determined based on the degree of condensation, and the fractional length of each chromosomal address was quantitatively presented.
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 81 (1991), S. 606-612 
    ISSN: 1432-2242
    Keywords: Genus Glycine ; Soybean ; Karyotype ; Marker chromosome ; Image analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Soybean [Glycine max (L.) Merr.] chromosomes were analyzed using the chromosome image analyzing system, CHIAS, and seven groups, including subgroups, were identified based on morphological characteristics. Two pairs of chromosomes were conspicuous in their morphological traits. One pair of chromosomes, which had the largest arm ratio among all the chromosomes, was commonly observed in the species in all three subgenera of the genus Glycine. These chromosomes also displayed a unique pattern after N-banding and were detected as marker chromosomes. G. soja, which is considered to be the ancestor of G. max, has two types of marker chromosomes. The lines that carry the same type as G. max may be the ancestors of G. max among the lines of G. soja. The morphological differences of the marker chromosomes within the species in the subgenus Soja are discussed in relation to the domestication process of soybean.
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  • 5
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 87 (1994), S. 893-899 
    ISSN: 1432-2242
    Keywords: Fluorescence in-situ hybridization (FISH) ; Ribosomal DNA ; Genus Oryza ; Image analysis ; NOR variability
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The 17s-5.8s-25s ribosomal RNA gene (rDNA) loci in Oryza spp. were identified by the fluorescence in-situ hybridization (FISH) method. The rDNA loci were located on one-to-three chromosomes (two-to-six sites) within the eight diploid Oryza spp. One of the rDNA loci gave the weakest hybridization signal. This locus is reported for the first time in the genus Oryza. The chromosomes containing the rDNA loci were determined to be numbers 9, 10 and 11 in descending order of the copy number of rDNA. The application of image analysis methods, after slide preparation treatments (post-treatments), and the use of a thermal cycler, greatly improved the reproducibility of the results. The evolutionary significance of the variability of rDNA loci among the Oryza spp. is discussed.
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  • 6
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 84 (1992), S. 787-791 
    ISSN: 1432-2242
    Keywords: Barley chromosomes ; Rice chromosomes ; Laser dissection ; Micromanipulation ; Image analysis
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Rice and barley chromosomal samples were prepared both on a polyester membrane and on an ordinary glass slide and subjected to microdissection by an argon-ion laser. The intensity and the position of the laser beam were controlled by a microcomputer. The most suitable intensity to obtain chromosomal fragments was determined experimentally. As a result, specific regions of the centromere, satellite, short arm, or long arm, of the barley and rice chromosomes were dissected out from the chromosomal spreads. Chromosomal fragments were also successfully transferred from the sample into an Eppendorf tube.
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  • 7
    Electronic Resource
    Electronic Resource
    Springer
    Theoretical and applied genetics 91 (1995), S. 212-217 
    ISSN: 1432-2242
    Keywords: Oryza glaberrima ; Karyotype analysis ; Ribosomal RNA genes ; Image analysis ; Multicolor in situ hybridization
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract African cultivated rice, Oryza glaberrima Steud., was cytologically characterized by using both karyotype analysis and molecular cytology. The somatic chromosomes resemble those of Asian cultivated rice, Oryza sauva L., in general morphology, although some minor differences were noted. Multicolor fluorescence in situ hybridization (McFISH) with chromosomes detected one 45s (17s-5.8s-25s) ribosomal RNA gene locus (45s rDNA) and one 5s ribosomal RNA gene locus (5s rDNA) in the chromosome complement. The 45s rDNA and 5s rDNA loci were physically mapped to the distal end of the short arm of chromosome 9 and to the proximal region of the short arm of chromosome 11 respectively, as in O. sativa. Based on the cytological observations and the physical map of the rDNA loci, the chromosomal organization of O.glaberrima and O. sativa seems to be very similar.
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  • 8
    ISSN: 1432-2242
    Keywords: Key words Quantitative idiogram ; Prometaphase chromosome ; Image analysis ; Fluorescence in situ hybridization ; T subgenome progenitor
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract  Using DAPI-stained prometaphase chromosomes, quantitative idiograms were constructed for the T subgenome of Nicotiana tabacum (2n = 4x = 48, SSTT) and two putative candidates for its T subgenome progenitor, Nicotiana otophora and Nicotiana tomentosiformis (both have 2n = 24, TT). The large chromosomes of the three karyotypes could be identified from the distributional pattern of the DAPI signal. Fluorescence in situ hybridization (FISH) with 5S rDNA gave not only good cytogenetical landmarks for identification of small chromosomes of the karyotypes but also phylogenetical information. In all three idiograms, 5S rDNA was localized in the proximal region of the long arm of a small submetacentric pair, but an additional 5S rDNA locus was detected terminally on the short arm of a small metacentric pair in N. otophora. The 18S rDNA locus detected here corresponded to satellite regions in all three karyotypes. Two satellited pairs in N. otophora and one satellited pair in N. tomentosiformis had single large subterminal DAPI blocks and two interstitial DAPI bands on their long arms, respectively. For the T subgenome component of N. tabacum, the single intense DAPI band was depicted on the center of the long arm of a satellited pair in the idiogram, although two interstitial bands were often detected on the long arm of the satellited pair in some spreads. Therefore, it was suggested that the T component of N. tabacum was more similar to that of N. tomentosiformis than N. otophora, especially in respect of the number and location of rDNA and the distributional patterns of DAPI signals.
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