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  • ELECTRONICS AND ELECTRICAL ENGINEERING  (5)
  • DNA-Binding Proteins/genetics  (2)
  • 1
    Publication Date: 2009-07-03
    Description: Schizophrenia is a complex disorder, caused by both genetic and environmental factors and their interactions. Research on pathogenesis has traditionally focused on neurotransmitter systems in the brain, particularly those involving dopamine. Schizophrenia has been considered a separate disease for over a century, but in the absence of clear biological markers, diagnosis has historically been based on signs and symptoms. A fundamental message emerging from genome-wide association studies of copy number variations (CNVs) associated with the disease is that its genetic basis does not necessarily conform to classical nosological disease boundaries. Certain CNVs confer not only high relative risk of schizophrenia but also of other psychiatric disorders. The structural variations associated with schizophrenia can involve several genes and the phenotypic syndromes, or the 'genomic disorders', have not yet been characterized. Single nucleotide polymorphism (SNP)-based genome-wide association studies with the potential to implicate individual genes in complex diseases may reveal underlying biological pathways. Here we combined SNP data from several large genome-wide scans and followed up the most significant association signals. We found significant association with several markers spanning the major histocompatibility complex (MHC) region on chromosome 6p21.3-22.1, a marker located upstream of the neurogranin gene (NRGN) on 11q24.2 and a marker in intron four of transcription factor 4 (TCF4) on 18q21.2. Our findings implicating the MHC region are consistent with an immune component to schizophrenia risk, whereas the association with NRGN and TCF4 points to perturbation of pathways involved in brain development, memory and cognition.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3077530/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3077530/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Stefansson, Hreinn -- Ophoff, Roel A -- Steinberg, Stacy -- Andreassen, Ole A -- Cichon, Sven -- Rujescu, Dan -- Werge, Thomas -- Pietilainen, Olli P H -- Mors, Ole -- Mortensen, Preben B -- Sigurdsson, Engilbert -- Gustafsson, Omar -- Nyegaard, Mette -- Tuulio-Henriksson, Annamari -- Ingason, Andres -- Hansen, Thomas -- Suvisaari, Jaana -- Lonnqvist, Jouko -- Paunio, Tiina -- Borglum, Anders D -- Hartmann, Annette -- Fink-Jensen, Anders -- Nordentoft, Merete -- Hougaard, David -- Norgaard-Pedersen, Bent -- Bottcher, Yvonne -- Olesen, Jes -- Breuer, Rene -- Moller, Hans-Jurgen -- Giegling, Ina -- Rasmussen, Henrik B -- Timm, Sally -- Mattheisen, Manuel -- Bitter, Istvan -- Rethelyi, Janos M -- Magnusdottir, Brynja B -- Sigmundsson, Thordur -- Olason, Pall -- Masson, Gisli -- Gulcher, Jeffrey R -- Haraldsson, Magnus -- Fossdal, Ragnheidur -- Thorgeirsson, Thorgeir E -- Thorsteinsdottir, Unnur -- Ruggeri, Mirella -- Tosato, Sarah -- Franke, Barbara -- Strengman, Eric -- Kiemeney, Lambertus A -- Genetic Risk and Outcome in Psychosis (GROUP) -- Melle, Ingrid -- Djurovic, Srdjan -- Abramova, Lilia -- Kaleda, Vasily -- Sanjuan, Julio -- de Frutos, Rosa -- Bramon, Elvira -- Vassos, Evangelos -- Fraser, Gillian -- Ettinger, Ulrich -- Picchioni, Marco -- Walker, Nicholas -- Toulopoulou, Timi -- Need, Anna C -- Ge, Dongliang -- Yoon, Joeng Lim -- Shianna, Kevin V -- Freimer, Nelson B -- Cantor, Rita M -- Murray, Robin -- Kong, Augustine -- Golimbet, Vera -- Carracedo, Angel -- Arango, Celso -- Costas, Javier -- Jonsson, Erik G -- Terenius, Lars -- Agartz, Ingrid -- Petursson, Hannes -- Nothen, Markus M -- Rietschel, Marcella -- Matthews, Paul M -- Muglia, Pierandrea -- Peltonen, Leena -- St Clair, David -- Goldstein, David B -- Stefansson, Kari -- Collier, David A -- 089061/Wellcome Trust/United Kingdom -- 1R01HL087679-01/HL/NHLBI NIH HHS/ -- PDA/02/06/016/Department of Health/United Kingdom -- R01 MH078075/MH/NIMH NIH HHS/ -- England -- Nature. 2009 Aug 6;460(7256):744-7. doi: 10.1038/nature08186. Epub 2009 Jul 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉deCODE genetics, Sturlugata 8, IS-101 Reykjavik, Iceland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19571808" target="_blank"〉PubMed〈/a〉
    Keywords: Basic Helix-Loop-Helix Leucine Zipper Transcription Factors ; Chromosomes, Human, Pair 11/genetics ; Chromosomes, Human, Pair 18/genetics ; Chromosomes, Human, Pair 6/genetics ; DNA-Binding Proteins/genetics ; Genetic Markers/genetics ; Genetic Predisposition to Disease/*genetics ; Genome, Human/genetics ; Genome-Wide Association Study ; Genotype ; Humans ; Major Histocompatibility Complex/genetics ; Neurogranin/genetics ; Polymorphism, Single Nucleotide/*genetics ; Schizophrenia/*genetics/immunology ; Transcription Factors/genetics
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2010-10-29
    Description: Meiotic recombinations contribute to genetic diversity by yielding new combinations of alleles. Recently, high-resolution recombination maps were inferred from high-density single-nucleotide polymorphism (SNP) data using linkage disequilibrium (LD) patterns that capture historical recombination events. The use of these maps has been demonstrated by the identification of recombination hotspots and associated motifs, and the discovery that the PRDM9 gene affects the proportion of recombinations occurring at hotspots. However, these maps provide no information about individual or sex differences. Moreover, locus-specific demographic factors like natural selection can bias LD-based estimates of recombination rate. Existing genetic maps based on family data avoid these shortcomings, but their resolution is limited by relatively few meioses and a low density of markers. Here we used genome-wide SNP data from 15,257 parent-offspring pairs to construct the first recombination maps based on directly observed recombinations with a resolution that is effective down to 10 kilobases (kb). Comparing male and female maps reveals that about 15% of hotspots in one sex are specific to that sex. Although male recombinations result in more shuffling of exons within genes, female recombinations generate more new combinations of nearby genes. We discover novel associations between recombination characteristics of individuals and variants in the PRDM9 gene and we identify new recombination hotspots. Comparisons of our maps with two LD-based maps inferred from data of HapMap populations of Utah residents with ancestry from northern and western Europe (CEU) and Yoruba in Ibadan, Nigeria (YRI) reveal population differences previously masked by noise and map differences at regions previously described as targets of natural selection.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kong, Augustine -- Thorleifsson, Gudmar -- Gudbjartsson, Daniel F -- Masson, Gisli -- Sigurdsson, Asgeir -- Jonasdottir, Aslaug -- Walters, G Bragi -- Jonasdottir, Adalbjorg -- Gylfason, Arnaldur -- Kristinsson, Kari Th -- Gudjonsson, Sigurjon A -- Frigge, Michael L -- Helgason, Agnar -- Thorsteinsdottir, Unnur -- Stefansson, Kari -- England -- Nature. 2010 Oct 28;467(7319):1099-103. doi: 10.1038/nature09525.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉deCODE genetics, Sturlugata 8, 101 Reykjavik, Iceland. kong@decode.is〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20981099" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Chromosomes, Human/*genetics ; DNA-Binding Proteins/genetics ; Europe/ethnology ; Exons/genetics ; Female ; Genetics, Population ; Haplotypes/genetics ; Heterozygote ; Histone-Lysine N-Methyltransferase/genetics ; Humans ; Linkage Disequilibrium/genetics ; Male ; Meiosis/genetics ; Nigeria/ethnology ; Pedigree ; Polymorphism, Single Nucleotide/genetics ; Recombination, Genetic/*genetics ; Sample Size ; Selection, Genetic/genetics ; *Sex Characteristics ; Utah
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Publication Date: 2011-08-18
    Description: A fault model and a system model are necessary to assess the tolerance or resilience of a digital system to lightning-induced transients. It is noted that these models are usually developed separately. A new approach is outlined here for this assessment problem which combines the fault and system models into an overall model. With this approach, referred to as the containment set approach, an assessment of the effects of lightning-induced transients can be made in terms of a state transition matrix. This matrix can be generated by means of fault injection experiments. In addition, certain nonredundancy-oriented design alternatives to the achievement of lightning-induced transient tolerance in digital systems are indicated by the containment set approach.
    Keywords: ELECTRONICS AND ELECTRICAL ENGINEERING
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  • 4
    Publication Date: 2019-06-28
    Description: Containment set techniques are applied to 8085 microprocessor controllers so as to transform a typical control system into a slightly modified version, shown to be crashproof: after the departure of the intermittent/transient fault, return to one proper control algorithm is assured, assuming no permanent faults occur.
    Keywords: ELECTRONICS AND ELECTRICAL ENGINEERING
    Type: NASA-CR-169022 , NAS 1.26:169022
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  • 5
    Publication Date: 2019-06-28
    Description: The modeling and analysis of transient faults in microprocessor based controllers are discussed. Such controllers typically consist of a microprocessor, read only memory storing and application program, random access memory for data storage, and input/output devices for external communications. The effects of transient faults on the performance of the controller are reviewed. An instruction level perspective of performance is taken which is the basis of a useful high level program state description of the microprocessor controller. A transition matrix is defined which determines the controller's response to transient fault arrivals.
    Keywords: ELECTRONICS AND ELECTRICAL ENGINEERING
    Type: NASA-CR-165713
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  • 6
    Publication Date: 2019-06-27
    Description: An overview of the intermittent/transient (IT) fault study is presented. An interval survivability evaluation of digital systems for IT faults is discussed along with a method for detecting and diagnosing IT faults in digital systems.
    Keywords: ELECTRONICS AND ELECTRICAL ENGINEERING
    Type: NASA-CR-153743
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  • 7
    Publication Date: 2019-06-28
    Description: Accomplishments and directions for further research aimed at developing methods for assessing a candidate design of an avionic computer with respect to susceptability to lightning upset are reported. Emphasis is on fault tolerant computers. Both lightning stress and shielding are covered in a review of the electromagnetic environment. Stress characterization, system characterization, upset detection, and positive and negative design features are considered. A first cut theory of comparing candidate designs is presented including tests of comparative susceptability as well as its analysis and simulation. An approach to lightning induced transient fault effects is included.
    Keywords: ELECTRONICS AND ELECTRICAL ENGINEERING
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