Publication Date:
2005-08-16
Description:
We developed a model of 545 components (nodes) and 1259 interactions representing signaling pathways and cellular machines in the hippocampal CA1 neuron. Using graph theory methods, we analyzed ligand-induced signal flow through the system. Specification of input and output nodes allowed us to identify functional modules. Networking resulted in the emergence of regulatory motifs, such as positive and negative feedback and feedforward loops, that process information. Key regulators of plasticity were highly connected nodes required for the formation of regulatory motifs, indicating the potential importance of such motifs in determining cellular choices between homeostasis and plasticity.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032439/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉 〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032439/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ma'ayan, Avi -- Jenkins, Sherry L -- Neves, Susana -- Hasseldine, Anthony -- Grace, Elizabeth -- Dubin-Thaler, Benjamin -- Eungdamrong, Narat J -- Weng, Gehzi -- Ram, Prahlad T -- Rice, J Jeremy -- Kershenbaum, Aaron -- Stolovitzky, Gustavo A -- Blitzer, Robert D -- Iyengar, Ravi -- DA15863/DA/NIDA NIH HHS/ -- GM-072853/GM/NIGMS NIH HHS/ -- GM-54508/GM/NIGMS NIH HHS/ -- GM-62754/GM/NIGMS NIH HHS/ -- GM-65065/GM/NIGMS NIH HHS/ -- P50 GM071558/GM/NIGMS NIH HHS/ -- P50 GM071558-01A20007/GM/NIGMS NIH HHS/ -- P50 GM071558-020007/GM/NIGMS NIH HHS/ -- P50 GM071558-030007/GM/NIGMS NIH HHS/ -- R01 GM054508/GM/NIGMS NIH HHS/ -- R01 GM054508-12/GM/NIGMS NIH HHS/ -- R01 GM072853/GM/NIGMS NIH HHS/ -- R01 GM072853-01/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2005 Aug 12;309(5737):1078-83.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology and Biological Chemistry Mount Sinai School of Medicine, New York, NY 10029, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16099987" target="_blank"〉PubMed〈/a〉
Keywords:
Algorithms
;
Animals
;
Brain-Derived Neurotrophic Factor/metabolism
;
Calcium-Calmodulin-Dependent Protein Kinase Type 2
;
Calcium-Calmodulin-Dependent Protein Kinases/metabolism
;
Cyclic AMP Response Element-Binding Protein/metabolism
;
Cyclic AMP-Dependent Protein Kinases/metabolism
;
Feedback, Physiological
;
Glutamic Acid/metabolism
;
Hippocampus/*cytology/physiology
;
Homeostasis
;
Ligands
;
Long-Term Potentiation
;
Mammals
;
Mathematics
;
Mitogen-Activated Protein Kinases/metabolism
;
Models, Neurological
;
Neuronal Plasticity
;
Neurons/*physiology
;
Norepinephrine/metabolism
;
Protein Kinase C/metabolism
;
Receptors, AMPA/metabolism
;
*Signal Transduction
;
Software
;
Systems Biology
Print ISSN:
0036-8075
Electronic ISSN:
1095-9203
Topics:
Biology
,
Chemistry and Pharmacology
,
Computer Science
,
Medicine
,
Natural Sciences in General
,
Physics
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