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    Publication Date: 2021-02-08
    Description: The GEOTRACES Intermediate Data Product 2017 (IDP2017) is the second publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2016. The IDP2017 includes data from the Atlantic, Pacific, Arctic, Southern and Indian oceans, with about twice the data volume of the previous IDP2014. For the first time, the IDP2017 contains data for a large suite of biogeochemical parameters as well as aerosol and rain data characterising atmospheric trace element and isotope (TEI) sources. The TEI data in the IDP2017 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at crossover stations. The IDP2017 consists of two parts: (1) a compilation of digital data for more than 450 TEIs as well as standard hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing an on-line atlas that includes more than 590 section plots and 130 animated 3D scenes. The digital data are provided in several formats, including ASCII, Excel spreadsheet, netCDF, and Ocean Data View collection. Users can download the full data packages or make their own custom selections with a new on-line data extraction service. In addition to the actual data values, the IDP2017 also contains data quality flags and 1-σ data error values where available. Quality flags and error values are useful for data filtering and for statistical analysis. Metadata about data originators, analytical methods and original publications related to the data are linked in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2017 as section plots and rotating 3D scenes. The basin-wide 3D scenes combine data from many cruises and provide quick overviews of large-scale tracer distributions. These 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of tracer plumes near ocean margins or along ridges. The IDP2017 is the result of a truly international effort involving 326 researchers from 22 countries. This publication provides the critical reference for unpublished data, as well as for studies that make use of a large cross-section of data from the IDP2017.
    Type: Article , PeerReviewed
    Format: text
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  • 6
    Publication Date: 2024-02-07
    Description: Highlights • Dissolved gaseous mercury can be calculated from modeled dissolved inorganic carbon. • Modeled dissolved gaseous mercury agrees well with worldwide observations. • Dissolved gaseous mercury is related to depth and macronutrients concentrations. Mercury (Hg) in seawater is subject to interconversions via (photo)chemical and (micro)biological processes that determine the extent of dissolved gaseous mercury (DGM) (re)emission and the production of monomethylmercury. We investigated Hg speciation in the South Atlantic Ocean on a GEOTRACES cruise along a 40°S section between December 2011 and January 2012 (354 samples collected at 24 stations from surface to 5250 m maximum depth). Using statistical analysis, concentrations of methylated mercury (MeHg, geometric mean 35.4 fmol L−1) were related to seawater temperature, salinity, and fluorescence. DGM concentrations (geometric mean 0.17 pmol L−1) were related to water column depth, concentrations of macronutrients and dissolved inorganic carbon (DIC). The first-ever observed linear correlation between DGM and DIC obtained from high-resolution data indicates possible DGM production by organic matter remineralization via biological or dark abiotic reactions. DGM concentrations projected from literature DIC data using the newly discovered DGM–DIC relationship agreed with published DGM observations.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 7
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    PANGAEA
    In:  Supplement to: Hennige, Sebastian; Wicks, L C; Kamenos, N A; Bakker, Dorothee C E; Findlay, Helen S; Dumousseaud, Cynthia; Roberts, J Murray (2014): Short-term metabolic and growth responses of the cold-water coral Lophelia pertusa to ocean acidification. Deep Sea Research Part II: Topical Studies in Oceanography, 99, 27-35, https://doi.org/10.1016/j.dsr2.2013.07.005
    Publication Date: 2024-03-15
    Description: Cold-water corals are amongst the most three-dimensionally complex deep-sea habitats known and are associated with high local biodiversity. Despite their importance as ecosystem engineers, little is known about how these organisms will respond to projected ocean acidification. Since preindustrial times, average ocean pH has already decreased from 8.2 to ~ 8.1. Predicted CO2 emissions will decrease this by up to another 0.3 pH units by the end of the century. This decrease in pH may have a wide range of impacts upon marine life, and in particular upon calcifiers such as cold-water corals. Lophelia pertusa is the most widespread cold-water coral (CWC) species, frequently found in the North Atlantic. Data here relate to a short term data set (21 days) on metabolism and net calcification rates of freshly collected L. pertusa from Mingulay Reef Complex, Scotland. These data from freshly collected L. pertusa from the Mingulay Reef Complex will help define the impact of ocean acidification upon the growth, physiology and structural integrity of this key reef framework forming species.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Alkalinity anomaly technique (Smith and Key, 1975); Animalia; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Benthos; Bicarbonate ion; Calcification/Dissolution; Calcification rate, standard error; Calcification rate of calcium carbonate; Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Growth rate; Growth rate, standard error; Incubation duration; Laboratory experiment; Lophelia pertusa; Mingulayreef; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Polyp number; Respiration; Respiration rate, oxygen; Respiration rate, oxygen, standard deviation; Respiration rate, oxygen, standard error; Salinity; Single species; Species; Temperate; Temperature, water; Tissue, dry mass; UKOA; United Kingdom Ocean Acidification research programme
    Type: Dataset
    Format: text/tab-separated-values, 1107 data points
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  • 8
    Publication Date: 2024-03-15
    Description: It has been proposed that increasing levels of pCO2 in the surface ocean will lead to more partitioning of the organic carbon fixed by marine primary production into the dissolved rather than the particulate fraction. This process may result in enhanced accumulation of dissolved organic carbon (DOC) in the surface ocean and/or concurrent accumulation of transparent exopolymer particles (TEPs), with important implications for the functioning of the marine carbon cycle. We investigated this in shipboard bioassay experiments that considered the effect of four different pCO2 scenarios (ambient, 550, 750 and 1000 µatm) on unamended natural phytoplankton communities from a range of locations in the northwest European shelf seas. The environmental settings, in terms of nutrient availability, phytoplankton community structure and growth conditions, varied considerably between locations. We did not observe any strong or consistent effect of pCO2 on DOC production. There was a significant but highly variable effect of pCO2 on the production of TEPs. In three of the five experiments, variation of TEP production between pCO2 treatments was caused by the effect of pCO2 on phytoplankton growth rather than a direct effect on TEP production. In one of the five experiments, there was evidence of enhanced TEP production at high pCO2 (twice as much production over the 96 h incubation period in the 750 matm treatment compared with the ambient treatment) independent of indirect effects, as hypothesised by previous studies. Our results suggest that the environmental setting of experiments (community structure, nutrient availability and occurrence of phytoplankton growth) is a key factor determining the TEP response to pCO2 perturbations.
    Keywords: Alkalinity, total; Aragonite saturation state; Bicarbonate ion; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, organic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; Coast and continental shelf; Coulometric titration; D366_E1; D366_E2; D366_E3; D366_E4; D366_E5; Entire community; Event label; EXP; Experiment; Flag; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Laboratory experiment; Nitrate; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phosphate; Phytoplankton; Potentiometric titration; Salinity; Silicate; Temperate; Temperature, water; Time in hours; Transparent exopolymer particles as Gum Xanthan equivalents per volume; Treatment; UKOA; United Kingdom Ocean Acidification research programme
    Type: Dataset
    Format: text/tab-separated-values, 12066 data points
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  • 9
    Publication Date: 2024-03-15
    Description: The ongoing oceanic uptake of anthropogenic carbon dioxide (CO2) is significantly altering the carbonate chemistry of seawater, a phenomenon referred to as ocean acidification. Experimental manipulations have been increasingly used to gauge how continued ocean acidification will potentially impact marine ecosystems and their associated biogeochemical cycles in the future; however, results amongst studies, particularly when performed on natural communities, are highly variable, which may reflect community/environment-specific responses or inconsistencies in experimental approach. To investigate the potential for identification of more generic responses and greater experimentally reproducibility, we devised and implemented a series (n = 8) of short-term (2-4 days) multi-level (〉=4 conditions) carbonate chemistry/nutrient manipulation experiments on a range of natural microbial communities sampled in Northwest European shelf seas. Carbonate chemistry manipulations and resulting biological responses were found to be highly reproducible within individual experiments and to a lesser extent between geographically separated experiments. Statistically robust reproducible physiological responses of phytoplankton to increasing pCO2, characterised by a suppression of net growth for small-sized cells (〈10 µm), were observed in the majority of the experiments, irrespective of natural or manipulated nutrient status. Remaining between-experiment variability was potentially linked to initial community structure and/or other site-specific environmental factors. Analysis of carbon cycling within the experiments revealed the expected increased sensitivity of carbonate chemistry to biological processes at higher pCO2 and hence lower buffer capacity. The results thus emphasise how biogeochemical feedbacks may be altered in the future ocean.
    Keywords: Alkalinity, total; Aragonite saturation state; Bicarbonate ion; Bottles or small containers/Aquaria (〈20 L); Calcite saturation state; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbon, organic, particulate; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Chlorophyll a; Ciliates; Coast and continental shelf; Coccospheres; Community composition and diversity; Coulometric titration; D366_E1; D366_E2; D366_E2b; D366_E3; D366_E4; D366_E4b; D366_E5; D366_E5b; Diatoms; Dinoflagellates; Entire community; Event label; EXP; Experiment; Flag; Flagellates; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Identification; Laboratory experiment; Macro-nutrients; Nanoflagellates, heterotrophic; Nitrate; North Atlantic; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phosphate; Photosynthetic efficiency; Plankton; Potentiometric titration; Primary production, carbon assimilation (24 hr.); Primary production/Photosynthesis; Salinity; Silicate; Synechococcus; Temperate; Temperature, water; Time in hours; Treatment; UKOA; United Kingdom Ocean Acidification research programme
    Type: Dataset
    Format: text/tab-separated-values, 16897 data points
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  • 10
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    PANGAEA
    In:  Supplement to: Smith, Helen Elizabeth Katie; Tyrrell, Toby; Charalampopoulou, Anastasia; Dumousseaud, Cynthia; Legge, Oliver J; Birchenough, Sarah; Pettit, Laura Rachel; Garley, Rebecca; Hartman, Sue E; Hartman, Mark C; Sagoo, Navjit; Daniels, Chris J; Achterberg, Eric Pieter; Hydes, D J (2012): Predominance of heavily calcified coccolithophores at low CaCO3 saturation during winter in the Bay of Biscay. Proceedings of the National Academy of Sciences, 109(23), 8845-8849, https://doi.org/10.1073/pnas.1117508109
    Publication Date: 2024-03-15
    Description: Coccolithophores are an important component of the Earth system, and, as calcifiers, their possible susceptibility to ocean acidification is of major concern. Laboratory studies at enhanced pCO2 levels have produced divergent results without overall consensus. However, it has been predicted from these studies that, although calcification may not be depressed in all species, acidification will produce "a transition in dominance from more to less heavily calcified coccolithophores" [Ridgwell A, et al., (2009) Biogeosciences 6:2611-2623]. A recent observational study [Beaufort L, et al., (2011) Nature 476:80-83] also suggested that coccolithophores are less calcified in more acidic conditions. We present the results of a large observational study of coccolithophore morphology in the Bay of Biscay. Samples were collected once a month for over a year, along a 1,000-km-long transect. Our data clearly show that there is a pronounced seasonality in the morphotypes of Emiliania huxleyi, the most abundant coccolithophore species. Whereas pH and CaCO3 saturation are lowest in winter, the E. huxleyi population shifts from 〈10% (summer) to 〉90% (winter) of the heavily calcified form. However, it is unlikely that the shifts in carbonate chemistry alone caused the morphotype shift. Our finding that the most heavily calcified morphotype dominates when conditions are most acidic is contrary to the earlier predictions and raises further questions about the fate of coccolithophores in a high-CO2 world.
    Keywords: Alkalinity, total; Aragonite saturation state; Bicarbonate ion; Biomass/Abundance/Elemental composition; Calcite saturation state; Calculated using seacarb after Nisumaa et al. (2010); Carbon, inorganic, dissolved; Carbonate ion; Carbonate system computation flag; Carbon dioxide; Cell density; Cell density, standard error; Chromista; Coast and continental shelf; Coccoliths, overcalcified; Confidence interval; Coulometric titration; Counting; DATE/TIME; Emiliania huxleyi; Field observation; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Growth/Morphology; Haptophyta; LATITUDE; LONGITUDE; North Atlantic; Number of measurements; OA-ICC; Ocean Acidification International Coordination Centre; Open ocean; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); Pelagos; pH; Phosphate; Phytoplankton; Potentiometric titration; Salinity; Silicate; Single species; Species; Temperate; Temperature, water; Volume
    Type: Dataset
    Format: text/tab-separated-values, 13730 data points
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