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  • 1
    Publication Date: 2011-12-16
    Description: Author(s): L. R. Moore, M. A. Lysaght, J. S. Parker, H. W. van der Hart, and K. T. Taylor [Phys. Rev. A 84, 061404] Published Thu Dec 15, 2011
    Keywords: Atomic and molecular processes in external fields, including interactions with strong fields and short pulses
    Print ISSN: 1050-2947
    Electronic ISSN: 1094-1622
    Topics: Physics
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  • 2
    Publication Date: 2009-02-03
    Description: Phosphorus is an obligate requirement for the growth of all organisms; major biochemical reservoirs of phosphorus in marine plankton include nucleic acids and phospholipids. However, eukaryotic phytoplankton and cyanobacteria (that is, 'phytoplankton' collectively) have the ability to decrease their cellular phosphorus content when phosphorus in their environment is scarce. The biochemical mechanisms that allow phytoplankton to limit their phosphorus demand and still maintain growth are largely unknown. Here we show that phytoplankton, in regions of oligotrophic ocean where phosphate is scarce, reduce their cellular phosphorus requirements by substituting non-phosphorus membrane lipids for phospholipids. In the Sargasso Sea, where phosphate concentrations were less than 10 nmol l-1, we found that only 1.3 +/- 0.6% of phosphate uptake was used for phospholipid synthesis; in contrast, in the South Pacific subtropical gyre, where phosphate was greater than 100 nmol l-1, plankton used 17 6% (ref. 6). Examination of the planktonic membrane lipids at these two locations showed that classes of sulphur- and nitrogen-containing membrane lipids, which are devoid of phosphorus, were more abundant in the Sargasso Sea than in the South Pacific. Furthermore, these non-phosphorus, 'substitute lipids' were dominant in phosphorus-limited cultures of all of the phytoplankton species we examined. In contrast, the marine heterotrophic bacteria we examined contained no substitute lipids and only phospholipids. Thus heterotrophic bacteria, which compete with phytoplankton for nutrients in oligotrophic regions like the Sargasso Sea, appear to have a biochemical phosphorus requirement that phytoplankton avoid by using substitute lipids. Our results suggest that phospholipid substitutions are fundamental biochemical mechanisms that allow phytoplankton to maintain growth in the face of phosphorus limitation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Van Mooy, Benjamin A S -- Fredricks, Helen F -- Pedler, Byron E -- Dyhrman, Sonya T -- Karl, David M -- Koblizek, Michal -- Lomas, Michael W -- Mincer, Tracy J -- Moore, Lisa R -- Moutin, Thierry -- Rappe, Michael S -- Webb, Eric A -- England -- Nature. 2009 Mar 5;458(7234):69-72. doi: 10.1038/nature07659.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, USA. bvanmooy@whoi.edu〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19182781" target="_blank"〉PubMed〈/a〉
    Keywords: Carbon/analysis ; *Lipid Metabolism ; Lipids/*chemistry ; Membrane Lipids/chemistry ; Nitrogen/analysis/metabolism ; Oceans and Seas ; Phosphates/metabolism ; Phospholipids/biosynthesis ; Phosphorus/analysis/*deficiency ; Phytoplankton/*metabolism ; Seawater/*chemistry/microbiology ; Synechococcus/chemistry/metabolism
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 3
    Electronic Resource
    Electronic Resource
    Springer
    Oecologia 34 (1978), S. 185-202 
    ISSN: 1432-1939
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary In order to evaluate the role of seed predators as selective agents within a population of conspecific plants, the intensity of predispersal seed predation by chewing insects and the variation in predation intensity with individual and season were measured for the legume shrub Crotalaria pallida. In a native, tropical (East African) population, predation intensity averaged 49% for late dry season—early wet season samples, but ranged from less than 20% to near 100% for different individuals. Average seedcrop loss varied markedly with season, and these seasonal shifts differed in two adjacent sites, probably due at least in part to transient predator satiation. However, individual plants differed significantly in intensity of seed predation sustained, and these individual differences were apparently maintained consistently in the face of the seasonal changes. For introduced, temperate-zone (North Carolina, USA) populations of the same species, predation averaged only 16–17%, but the proportionate variation among individuals was even greater than for the African population. These results support the hypothesis that predators inflict substantial differential seed mortality and discriminate consistently among individual plant seedcrops, thus exerting strong selection within plant populations.
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    Springer
    Oecologia 34 (1978), S. 203-223 
    ISSN: 1432-1939
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Correlates of individual plant escape from seed predation were investigated for an East African population of the shrub Crotalaria pallida (Papilionaceae) in which seed mortality due to chewing insects is high and varies among neighboring individuals. Several plant properties expected to influence phytophagous insect host choice or fitness were measured simultaneously and their contribution to variance in predation examined with multiple regression analysis. Microhabitat, seed pyrrolizidine alkaloid concentration, and parasitoid load on the seed predators are the best predictors of predation intensity; plant size, distance from conspecifics, and infructescence characteristics do not appear to affect predation probabilities. However, predictions of the direction of microhabitat effects were only partially successful, and contrary to expectation, plants with higher seed alkaloid levels experienced greater seed predation; several hypotheses are advanced to account for these results. Higher parasitoid loads are associated with lower predation intensity, probably due in part to interference between lepidopteran larvae and the less voracious hymenopteran seed predators or their parasitoids.
    Type of Medium: Electronic Resource
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  • 5
    Publication Date: 2013-05-10
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 6
  • 7
    Publication Date: 2012-04-11
    Description: The HIV-1 envelope (Env) spike (gp1203/gp413) undergoes considerable structural rearrangements to mediate virus entry into cells and to evade the host immune response. Engagement of CD4, the primary human receptor, fixes a particular conformation and primes Env for entry. The CD4-bound state, however, is prone to spontaneous inactivation and susceptible to antibody neutralization. How does unliganded HIV-1 maintain CD4-binding capacity and regulate transitions to the CD4-bound state? To define this mechanistically, we determined crystal structures of unliganded core gp120 from HIV-1 clades B, C, and E. Notably, all of these unliganded HIV-1 structures resembled the CD4-bound state. Conformational fixation with ligand selection and thermodynamic analysis of full-length and core gp120 interactions revealed that the tendency of HIV-1 gp120 to adopt the CD4-bound conformation was restrained by the V1/V2- and V3-variable loops. In parallel, we determined the structure of core gp120 in complex with the small molecule, NBD-556, which specifically recognizes the CD4-bound conformation of gp120. Neutralization by NBD-556 indicated that Env spikes on primary isolates rarely assume the CD4-bound conformation spontaneously, although they could do so when quaternary restraints were loosened. Together, the results suggest that the CD4-bound conformation represents a “ground state” for the gp120 core, with variable loop and quaternary interactions restraining unliganded gp120 from “snapping” into this conformation. A mechanism of control involving deformations in unliganded structure from a functionally critical state (e.g., the CD4-bound state) provides advantages in terms of HIV-1 Env structural diversity and resistance to antibodies and inhibitors, while maintaining elements essential for entry.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 8
    Publication Date: 2015-04-02
    Description: Melt inclusions (MI) are considered the best tool available for determining the pre-eruptive volatile contents of magmas. H 2 O and CO 2 concentrations of the glass phase in MI are commonly used both as a barometer and to track magma degassing behavior during ascent due to the strong pressure dependence of H 2 O and CO 2 solubilities in silicate melts. The often unstated and sometimes overlooked requirement for this method to be valid is that the glass phase in the MI must represent the composition of the melt that was trapped at depth in the volcanic plumbing system. However, melt inclusions commonly contain a vapor bubble that formed after trapping owing to differential shrinkage of the melt compared to the host crystal, and/or crystallization at the inclusion-host interface. Such bubbles may contain a substantial portion of volatiles, such as CO 2 , that were originally dissolved in the melt. In this study, we determined the contribution of CO 2 in the vapor bubble to the overall CO 2 content of MI based on quantitative Raman analysis of the vapor bubbles in MI from the 1959 Kilauea Iki (Hawaii), 1960 Kapoho (Hawaii), 1974 Fuego volcano (Guatemala), and 1977 Seguam Island (Alaska) eruptions. We found that the bubbles typically contain 40 to 90% of the total CO 2 in the MI. Reconstructing the original CO 2 content by adding the CO 2 in the bubble back into the melt results in an increase in CO 2 concentration by as much as an order of magnitude (thousands of parts per million). Reconstructed CO 2 concentrations correspond to trapping pressures that are significantly greater than one would predict based on analysis of the volatiles in the glass alone. Trapping depths can be as much as 10 km deeper than estimates that ignore the CO 2 in the bubble. In addition to CO 2 in the vapor bubbles, many MI showed the presence of a carbonate mineral phase. Failure to recognize the carbonate during petrographic examination or analysis of the glass and to include its contained CO 2 when reconstructing the CO 2 content of the originally trapped melt will introduce additional errors into the calculated volatile budget. Our results emphasize that accurate determination of the pre-eruptive volatile content of melts based on analysis of melt inclusions must consider the volatiles contained in the bubble (and carbonates, if present). This can be accomplished either by analysis of the bubble and the glass followed by mass-balance reconstruction of the original volatile content of the melt, or by re-homogenization of the MI prior to conducting microanalysis of the quenched, glassy MI.
    Print ISSN: 0003-004X
    Electronic ISSN: 1945-3027
    Topics: Geosciences
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  • 9
    Publication Date: 2013-05-22
    Description: Since the turn of the century, the paradigm of the marine microbial assemblage being composed primarily of photoautotrophs and chemoheterotrophs is shifting and challenging our understanding of how the microbial diversity contributes to the flow of energy, carbon, and other nutrients in the oceans. In PNAS, Muñoz-Marín et al. (1)...
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 10
    Publication Date: 2019
    Description: 〈p〉Adult cancers often arise from premalignant clonal expansions. Whether the same is true of childhood tumors has been unclear. To investigate whether Wilms tumor (nephroblastoma; a childhood kidney cancer) develops from a premalignant background, we examined the phylogenetic relationship between tumors and corresponding normal tissues. In 14 of 23 cases studied (61%), we found premalignant clonal expansions in morphologically normal kidney tissues that preceded tumor development. These clonal expansions were defined by somatic mutations shared between tumor and normal tissues but absent from blood cells. We also found hypermethylation of the 〈i〉H19〈/i〉 locus, a known driver of Wilms tumor development, in 58% of the expansions. Phylogenetic analyses of bilateral tumors indicated that clonal expansions can evolve before the divergence of left and right kidney primordia. These findings reveal embryonal precursors from which unilateral and multifocal cancers develop.〈/p〉
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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