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  • 1
    Publication Date: 2009-07-10
    Description: Recent advances in sequencing technologies have initiated an era of personal genome sequences. To date, human genome sequences have been reported for individuals with ancestry in three distinct geographical regions: a Yoruba African, two individuals of northwest European origin, and a person from China. Here we provide a highly annotated, whole-genome sequence for a Korean individual, known as AK1. The genome of AK1 was determined by an exacting, combined approach that included whole-genome shotgun sequencing (27.8x coverage), targeted bacterial artificial chromosome sequencing, and high-resolution comparative genomic hybridization using custom microarrays featuring more than 24 million probes. Alignment to the NCBI reference, a composite of several ethnic clades, disclosed nearly 3.45 million single nucleotide polymorphisms (SNPs), including 10,162 non-synonymous SNPs, and 170,202 deletion or insertion polymorphisms (indels). SNP and indel densities were strongly correlated genome-wide. Applying very conservative criteria yielded highly reliable copy number variants for clinical considerations. Potential medical phenotypes were annotated for non-synonymous SNPs, coding domain indels, and structural variants. The integration of several human whole-genome sequences derived from several ethnic groups will assist in understanding genetic ancestry, migration patterns and population bottlenecks.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860965/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2860965/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kim, Jong-Il -- Ju, Young Seok -- Park, Hansoo -- Kim, Sheehyun -- Lee, Seonwook -- Yi, Jae-Hyuk -- Mudge, Joann -- Miller, Neil A -- Hong, Dongwan -- Bell, Callum J -- Kim, Hye-Sun -- Chung, In-Soon -- Lee, Woo-Chung -- Lee, Ji-Sun -- Seo, Seung-Hyun -- Yun, Ji-Young -- Woo, Hyun Nyun -- Lee, Heewook -- Suh, Dongwhan -- Lee, Seungbok -- Kim, Hyun-Jin -- Yavartanoo, Maryam -- Kwak, Minhye -- Zheng, Ying -- Lee, Mi Kyeong -- Park, Hyunjun -- Kim, Jeong Yeon -- Gokcumen, Omer -- Mills, Ryan E -- Zaranek, Alexander Wait -- Thakuria, Joseph -- Wu, Xiaodi -- Kim, Ryan W -- Huntley, Jim J -- Luo, Shujun -- Schroth, Gary P -- Wu, Thomas D -- Kim, HyeRan -- Yang, Kap-Seok -- Park, Woong-Yang -- Kim, Hyungtae -- Church, George M -- Lee, Charles -- Kingsmore, Stephen F -- Seo, Jeong-Sun -- HG004221/HG/NHGRI NIH HHS/ -- P20 RR016480/RR/NCRR NIH HHS/ -- P20 RR016480-08/RR/NCRR NIH HHS/ -- RR016480/RR/NCRR NIH HHS/ -- U01 AI066569/AI/NIAID NIH HHS/ -- U01 AI066569-04/AI/NIAID NIH HHS/ -- U19 HD077693/HD/NICHD NIH HHS/ -- England -- Nature. 2009 Aug 20;460(7258):1011-5. doi: 10.1038/nature08211. Epub 2009 Jul 8.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Genomic Medicine Institute, Medical Research Center, Seoul National University, Seoul 110-799, Korea.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/19587683" target="_blank"〉PubMed〈/a〉
    Keywords: Asian Continental Ancestry Group/*genetics ; Chromosomes, Artificial, Bacterial/genetics ; Comparative Genomic Hybridization ; Computational Biology ; Genome, Human/*genetics ; Humans ; INDEL Mutation/genetics ; Korea ; Oligonucleotide Array Sequence Analysis ; Polymorphism, Single Nucleotide/genetics ; Sequence Analysis, DNA
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 2
    Publication Date: 2016-07-07
    Description: Author(s): J. P. Clancy, H. Gretarsson, E. K. H. Lee, Di Tian, J. Kim, M. H. Upton, D. Casa, T. Gog, Z. Islam, Byung-Gu Jeon, Kee Hoon Kim, S. Desgreniers, Yong Baek Kim, S. J. Julian, and Young-June Kim We have investigated the structural, electronic, and magnetic properties of the pyrochlore iridates Eu 2 Ir 2 O 7 and Pr 2 Ir 2 O 7 using a combination of resonant elastic x-ray scattering, x-ray powder diffraction, and resonant inelastic x-ray scattering (RIXS). The structural parameters of Eu 2 Ir 2 O 7 have bee… [Phys. Rev. B 94, 024408] Published Wed Jul 06, 2016
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 3
    Publication Date: 2011-08-13
    Description: We report classes of electronic systems that achieve thicknesses, effective elastic moduli, bending stiffnesses, and areal mass densities matched to the epidermis. Unlike traditional wafer-based technologies, laminating such devices onto the skin leads to conformal contact and adequate adhesion based on van der Waals interactions alone, in a manner that is mechanically invisible to the user. We describe systems incorporating electrophysiological, temperature, and strain sensors, as well as transistors, light-emitting diodes, photodetectors, radio frequency inductors, capacitors, oscillators, and rectifying diodes. Solar cells and wireless coils provide options for power supply. We used this type of technology to measure electrical activity produced by the heart, brain, and skeletal muscles and show that the resulting data contain sufficient information for an unusual type of computer game controller.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kim, Dae-Hyeong -- Lu, Nanshu -- Ma, Rui -- Kim, Yun-Soung -- Kim, Rak-Hwan -- Wang, Shuodao -- Wu, Jian -- Won, Sang Min -- Tao, Hu -- Islam, Ahmad -- Yu, Ki Jun -- Kim, Tae-il -- Chowdhury, Raeed -- Ying, Ming -- Xu, Lizhi -- Li, Ming -- Chung, Hyun-Joong -- Keum, Hohyun -- McCormick, Martin -- Liu, Ping -- Zhang, Yong-Wei -- Omenetto, Fiorenzo G -- Huang, Yonggang -- Coleman, Todd -- Rogers, John A -- New York, N.Y. -- Science. 2011 Aug 12;333(6044):838-43. doi: 10.1126/science.1206157.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Materials Science and Engineering, Beckman Institute for Advanced Science and Technology, and Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21836009" target="_blank"〉PubMed〈/a〉
    Keywords: Adhesiveness ; Dermis ; Elastic Modulus ; Elastomers ; Electric Power Supplies ; Electrocardiography/instrumentation/methods ; Electrodes ; Electrodiagnosis/*instrumentation/*methods ; Electroencephalography/instrumentation/methods ; Electromyography/instrumentation/methods ; *Epidermis ; Humans ; Mechanical Phenomena ; Monitoring, Physiologic/*instrumentation/*methods ; Nanostructures ; *Semiconductors
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2005-05-21
    Description: Patient-specific, immune-matched human embryonic stem cells (hESCs) are anticipated to be of great biomedical importance for studies of disease and development and to advance clinical deliberations regarding stem cell transplantation. Eleven hESC lines were established by somatic cell nuclear transfer (SCNT) of skin cells from patients with disease or injury into donated oocytes. These lines, nuclear transfer (NT)-hESCs, grown on human feeders from the same NT donor or from genetically unrelated individuals, were established at high rates, regardless of NT donor sex or age. NT-hESCs were pluripotent, chromosomally normal, and matched the NT patient's DNA. The major histocompatibility complex identity of each NT-hESC when compared to the patient's own showed immunological compatibility, which is important for eventual transplantation. With the generation of these NT-hESCs, evaluations of genetic and epigenetic stability can be made. Additional work remains to be done regarding the development of reliable directed differentiation and the elimination of remaining animal components. Before clinical use of these cells can occur, preclinical evidence is required to prove that transplantation of differentiated NT-hESCs can be safe, effective, and tolerated.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hwang, Woo Suk -- Roh, Sung Il -- Lee, Byeong Chun -- Kang, Sung Keun -- Kwon, Dae Kee -- Kim, Sue -- Kim, Sun Jong -- Park, Sun Woo -- Kwon, Hee Sun -- Lee, Chang Kyu -- Lee, Jung Bok -- Kim, Jin Mee -- Ahn, Curie -- Paek, Sun Ha -- Chang, Sang Sik -- Koo, Jung Jin -- Yoon, Hyun Soo -- Hwang, Jung Hye -- Hwang, Youn Young -- Park, Ye Soo -- Oh, Sun Kyung -- Kim, Hee Sun -- Park, Jong Hyuk -- Moon, Shin Yong -- Schatten, Gerald -- New York, N.Y. -- Science. 2005 Jun 17;308(5729):1777-83. Epub 2005 May 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉College of Veterinary Medicine, Seoul National University, Seoul 151-742, Korea. hwangws@snu.ac.kr〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/15905366" target="_blank"〉PubMed〈/a〉
    Keywords: Adult ; Agammaglobulinemia ; Blastocyst/*cytology ; Cell Differentiation ; *Cell Line ; Child ; Child, Preschool ; *Cloning, Organism ; DNA Fingerprinting ; Diabetes Mellitus, Type 1 ; Epigenesis, Genetic ; Ethics Committees, Research ; Female ; Fibroblasts ; HLA Antigens/analysis ; Humans ; Informed Consent ; Karyotyping ; Male ; *Nuclear Transfer Techniques ; Oocyte Donation ; Pluripotent Stem Cells/*cytology/immunology ; Spinal Cord Injuries ; Stem Cell Transplantation ; Tissue and Organ Procurement
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2018-11-15
    Description: Author(s): M. Hofherr, S. Moretti, J. Shim, S. Häuser, N. Y. Safonova, M. Stiehl, A. Ali, S. Sakshath, J. W. Kim, D. H. Kim, H. J. Kim, J. I. Hong, H. C. Kapteyn, M. M. Murnane, M. Cinchetti, D. Steil, S. Mathias, B. Stadtmüller, M. Albrecht, D. E. Kim, U. Nowak, and M. Aeschlimann One of the ultimate goals for future spintronic applications is to manipulate magnetic states of matter on the shortest of timescales. Here, the authors investigate the optically induced ultrafast demagnetization and remagnetization dynamics of ferromagnetic alloys based on either intrinsic or induced magnetic moments. Using pump-probe spectroscopy in combination with dynamic spin model simulations, they find that a CoFeB alloy with intrinsic magnetic moments on the Fe and Co sites reveals a distinct asymptotic amplitude limit of the remagnetization process, while in FePt the induced moments of the Pt sites stay always proportional to those of Fe. [Phys. Rev. B 98, 174419] Published Wed Nov 14, 2018
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 6
    Publication Date: 2009-12-17
    Description: Asia harbors substantial cultural and linguistic diversity, but the geographic structure of genetic variation across the continent remains enigmatic. Here we report a large-scale survey of autosomal variation from a broad geographic sample of Asian human populations. Our results show that genetic ancestry is strongly correlated with linguistic affiliations as well as geography. Most populations show relatedness within ethnic/linguistic groups, despite prevalent gene flow among populations. More than 90% of East Asian (EA) haplotypes could be found in either Southeast Asian (SEA) or Central-South Asian (CSA) populations and show clinal structure with haplotype diversity decreasing from south to north. Furthermore, 50% of EA haplotypes were found in SEA only and 5% were found in CSA only, indicating that SEA was a major geographic source of EA populations.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉HUGO Pan-Asian SNP Consortium -- Abdulla, Mahmood Ameen -- Ahmed, Ikhlak -- Assawamakin, Anunchai -- Bhak, Jong -- Brahmachari, Samir K -- Calacal, Gayvelline C -- Chaurasia, Amit -- Chen, Chien-Hsiun -- Chen, Jieming -- Chen, Yuan-Tsong -- Chu, Jiayou -- Cutiongco-de la Paz, Eva Maria C -- De Ungria, Maria Corazon A -- Delfin, Frederick C -- Edo, Juli -- Fuchareon, Suthat -- Ghang, Ho -- Gojobori, Takashi -- Han, Junsong -- Ho, Sheng-Feng -- Hoh, Boon Peng -- Huang, Wei -- Inoko, Hidetoshi -- Jha, Pankaj -- Jinam, Timothy A -- Jin, Li -- Jung, Jongsun -- Kangwanpong, Daoroong -- Kampuansai, Jatupol -- Kennedy, Giulia C -- Khurana, Preeti -- Kim, Hyung-Lae -- Kim, Kwangjoong -- Kim, Sangsoo -- Kim, Woo-Yeon -- Kimm, Kuchan -- Kimura, Ryosuke -- Koike, Tomohiro -- Kulawonganunchai, Supasak -- Kumar, Vikrant -- Lai, Poh San -- Lee, Jong-Young -- Lee, Sunghoon -- Liu, Edison T -- Majumder, Partha P -- Mandapati, Kiran Kumar -- Marzuki, Sangkot -- Mitchell, Wayne -- Mukerji, Mitali -- Naritomi, Kenji -- Ngamphiw, Chumpol -- Niikawa, Norio -- Nishida, Nao -- Oh, Bermseok -- Oh, Sangho -- Ohashi, Jun -- Oka, Akira -- Ong, Rick -- Padilla, Carmencita D -- Palittapongarnpim, Prasit -- Perdigon, Henry B -- Phipps, Maude Elvira -- Png, Eileen -- Sakaki, Yoshiyuki -- Salvador, Jazelyn M -- Sandraling, Yuliana -- Scaria, Vinod -- Seielstad, Mark -- Sidek, Mohd Ros -- Sinha, Amit -- Srikummool, Metawee -- Sudoyo, Herawati -- Sugano, Sumio -- Suryadi, Helena -- Suzuki, Yoshiyuki -- Tabbada, Kristina A -- Tan, Adrian -- Tokunaga, Katsushi -- Tongsima, Sissades -- Villamor, Lilian P -- Wang, Eric -- Wang, Ying -- Wang, Haifeng -- Wu, Jer-Yuarn -- Xiao, Huasheng -- Xu, Shuhua -- Yang, Jin Ok -- Shugart, Yin Yao -- Yoo, Hyang-Sook -- Yuan, Wentao -- Zhao, Guoping -- Zilfalil, Bin Alwi -- Indian Genome Variation Consortium -- New York, N.Y. -- Science. 2009 Dec 11;326(5959):1541-5. doi: 10.1126/science.1177074.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20007900" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Asia ; Asian Continental Ancestry Group/*genetics/history ; Bayes Theorem ; Cluster Analysis ; *Emigration and Immigration/history ; Ethnic Groups/*genetics/history ; Gene Flow ; Genotype ; Geography ; *Haplotypes ; History, Ancient ; Humans ; Language ; Linguistics ; Oligonucleotide Array Sequence Analysis ; Phylogeny ; *Polymorphism, Single Nucleotide ; Principal Component Analysis
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2016-07-21
    Description: Author(s): Jaehak Yang, Junhoe Kim, Bosung Kim, Young-Jun Cho, Jae-Hyeok Lee, and Sang-Koog Kim We performed micromagnetic numerical calculations to explore a cylindrical nanotube's magnetization dynamics and domain-wall (DW) motions driven by eigen-circular-rotating magnetic fields of different frequencies. We discovered the presence of two different localized DW oscillations as well as asymm… [Phys. Rev. B 94, 024425] Published Wed Jul 20, 2016
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 8
    Publication Date: 2005-07-05
    Description: Technologies to assess the molecular targets of biomolecules in living cells are lacking. We have developed a technology called magnetism-based interaction capture (MAGIC) that identifies molecular targets on the basis of induced movement of superparamagnetic nanoparticles inside living cells. Efficient intracellular uptake of superparamagnetic nanoparticles (coated with a small molecule of interest) was mediated by a transducible fusogenic peptide. These nanoprobes captured the small molecule's labeled target protein and were translocated in a direction specified by the magnetic field. Use of MAGIC in genome-wide expression screening identified multiple protein targets of a drug. MAGIC was also used to monitor signal-dependent modification and multiple interactions of proteins.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Won, Jaejoon -- Kim, Mina -- Yi, Yong-Weon -- Kim, Young Ho -- Jung, Neoncheol -- Kim, Tae Kook -- New York, N.Y. -- Science. 2005 Jul 1;309(5731):121-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon 305-701, Korea.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/15994554" target="_blank"〉PubMed〈/a〉
    Keywords: Caspase 3 ; Caspases/metabolism ; Cell Line ; *Cell Physiological Phenomena ; Cell Survival ; Endocytosis ; Fluorescein-5-isothiocyanate ; Fluorescent Dyes ; HeLa Cells ; Humans ; I-kappa B Proteins/metabolism ; *Magnetics ; Microscopy, Confocal ; *Molecular Probe Techniques ; *Molecular Probes ; NF-kappa B/metabolism ; *Nanostructures ; Oligopeptides/metabolism ; Phosphorylation ; Protein Binding ; Proteins/*metabolism ; Quantum Dots ; Recombinant Fusion Proteins/metabolism ; Signal Transduction ; Streptavidin ; Tacrolimus/metabolism ; Transcription Factor RelA ; Tumor Necrosis Factor-alpha/pharmacology ; beta-Transducin Repeat-Containing Proteins/metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2013-04-13
    Description: Successful integration of advanced semiconductor devices with biological systems will accelerate basic scientific discoveries and their translation into clinical technologies. In neuroscience generally, and in optogenetics in particular, the ability to insert light sources, detectors, sensors, and other components into precise locations of the deep brain yields versatile and important capabilities. Here, we introduce an injectable class of cellular-scale optoelectronics that offers such features, with examples of unmatched operational modes in optogenetics, including completely wireless and programmed complex behavioral control over freely moving animals. The ability of these ultrathin, mechanically compliant, biocompatible devices to afford minimally invasive operation in the soft tissues of the mammalian brain foreshadow applications in other organ systems, with potential for broad utility in biomedical science and engineering.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769938/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3769938/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Kim, Tae-il -- McCall, Jordan G -- Jung, Yei Hwan -- Huang, Xian -- Siuda, Edward R -- Li, Yuhang -- Song, Jizhou -- Song, Young Min -- Pao, Hsuan An -- Kim, Rak-Hwan -- Lu, Chaofeng -- Lee, Sung Dan -- Song, Il-Sun -- Shin, Gunchul -- Al-Hasani, Ream -- Kim, Stanley -- Tan, Meng Peun -- Huang, Yonggang -- Omenetto, Fiorenzo G -- Rogers, John A -- Bruchas, Michael R -- R00 DA025182/DA/NIDA NIH HHS/ -- R00DA025182/DA/NIDA NIH HHS/ -- R01 NS081707/NS/NINDS NIH HHS/ -- R01NS081707/NS/NINDS NIH HHS/ -- New York, N.Y. -- Science. 2013 Apr 12;340(6129):211-6. doi: 10.1126/science.1232437.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Materials Science and Engineering, Frederick Seitz Materials Research Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23580530" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; *Behavior, Animal ; Brain/*physiology ; *Brain Mapping/instrumentation/methods ; Electric Stimulation ; Electrophysiological Phenomena ; HEK293 Cells ; Humans ; Mice ; Microelectrodes ; Miniaturization ; Neurons/*physiology ; *Optogenetics ; Photic Stimulation ; *Semiconductors
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 10
    Publication Date: 2012-06-29
    Description: Author(s): Bongjae Kim, Beom Hyun Kim, Kyoo Kim, Hong Chul Choi, Sang-Yeon Park, Y. H. Jeong, and B. I. Min We have investigated the origins of large orbital magnetic moment (OM) and unique magnetic anisotropy in the quasi-1D magnetic cobaltate, α -CoV 2 O 6 , employing both the ab initio band structure method and the microscopic cluster model calculations. We have found that the peculiar crystal electric fiel... [Phys. Rev. B 85, 220407] Published Thu Jun 28, 2012
    Keywords: Magnetism
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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