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  • Electronic structure and strongly correlated systems  (8)
  • Models, Molecular  (8)
  • Surface physics, nanoscale physics, low-dimensional systems  (7)
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  • 11
    Publication Date: 2016-10-22
    Description: Author(s): J.-S. Zhou, L.-P. Cao, J. A. Alonso, J. Sanchez-Benitez, M. T. Fernandez-Diaz, X. Li, J.-G. Cheng, L. G. Marshall, C.-Q. Jin, and J. B. Goodenough Whether CaCr O 3 is a Mott insulator or a correlated metal is still controversial. We have performed measurements of magnetization, specific heat, and thermal conductivity on CaCr O 3 samples selected from many batches of high-pressure synthesis. The single-crystal CaCr O 3 sample exhibits an unprecedente… [Phys. Rev. B 94, 155137] Published Fri Oct 21, 2016
    Keywords: Electronic structure and strongly correlated systems
    Print ISSN: 1098-0121
    Electronic ISSN: 1095-3795
    Topics: Physics
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  • 12
    Publication Date: 2014-10-21
    Description: Hepatitis A virus (HAV) remains enigmatic, despite 1.4 million cases worldwide annually. It differs radically from other picornaviruses, existing in an enveloped form and being unusually stable, both genetically and physically, but has proved difficult to study. Here we report high-resolution X-ray structures for the mature virus and the empty particle. The structures of the two particles are indistinguishable, apart from some disorder on the inside of the empty particle. The full virus contains the small viral protein VP4, whereas the empty particle harbours only the uncleaved precursor, VP0. The smooth particle surface is devoid of depressions that might correspond to receptor-binding sites. Peptide scanning data extend the previously reported VP3 antigenic site, while structure-based predictions suggest further epitopes. HAV contains no pocket factor and can withstand remarkably high temperature and low pH, and empty particles are even more robust than full particles. The virus probably uncoats via a novel mechanism, being assembled differently to other picornaviruses. It utilizes a VP2 'domain swap' characteristic of insect picorna-like viruses, and structure-based phylogenetic analysis places HAV between typical picornaviruses and the insect viruses. The enigmatic properties of HAV may reflect its position as a link between 'modern' picornaviruses and the more 'primitive' precursor insect viruses; for instance, HAV retains the ability to move from cell-to-cell by transcytosis.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773894/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4773894/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wang, Xiangxi -- Ren, Jingshan -- Gao, Qiang -- Hu, Zhongyu -- Sun, Yao -- Li, Xuemei -- Rowlands, David J -- Yin, Weidong -- Wang, Junzhi -- Stuart, David I -- Rao, Zihe -- Fry, Elizabeth E -- 075491/Z/04/Wellcome Trust/United Kingdom -- G1000099/Medical Research Council/United Kingdom -- England -- Nature. 2015 Jan 1;517(7532):85-8. doi: 10.1038/nature13806. Epub 2014 Oct 19.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing 100101, China. ; Division of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington, Oxford OX3 7BN, UK. ; 1] National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing 100101, China [2] Sinovac Biotech Co., Ltd, Beijing 100085, China. ; National Institutes for Food and Drug Control, No. 2, TiantanXili, Beijing 100050, China. ; Institute of Molecular and Cellular Biology and Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds LS2 9JT, UK. ; Sinovac Biotech Co., Ltd, Beijing 100085, China. ; 1] Division of Structural Biology, University of Oxford, The Henry Wellcome Building for Genomic Medicine, Headington, Oxford OX3 7BN, UK [2] Diamond Light Sources, Harwell Science and Innovation Campus, Didcot OX11 0DE, UK. ; 1] National Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing 100101, China [2] Laboratory of Structural Biology, School of Medicine, Tsinghua University, Beijing 100084, China [3] State Key Laboratory of Medicinal Chemical Biology, Nankai University, Tianjin 300071, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25327248" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Capsid/chemistry ; Capsid Proteins/chemistry ; Crystallography, X-Ray ; *Evolution, Molecular ; Hepatitis A virus/*chemistry ; Hot Temperature ; Humans ; Hydrogen-Ion Concentration ; Insects/virology ; Models, Molecular ; Phylogeny ; Picornaviridae/*chemistry ; Transcytosis ; Virion/chemistry ; Virus Internalization
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 13
    Publication Date: 2014-12-18
    Description: The ryanodine receptors (RyRs) are high-conductance intracellular Ca(2+) channels that play a pivotal role in the excitation-contraction coupling of skeletal and cardiac muscles. RyRs are the largest known ion channels, with a homotetrameric organization and approximately 5,000 residues in each protomer. Here we report the structure of the rabbit RyR1 in complex with its modulator FKBP12 at an overall resolution of 3.8 A, determined by single-particle electron cryomicroscopy. Three previously uncharacterized domains, named central, handle and helical domains, display the armadillo repeat fold. These domains, together with the amino-terminal domain, constitute a network of superhelical scaffold for binding and propagation of conformational changes. The channel domain exhibits the voltage-gated ion channel superfamily fold with distinct features. A negative-charge-enriched hairpin loop connecting S5 and the pore helix is positioned above the entrance to the selectivity-filter vestibule. The four elongated S6 segments form a right-handed helical bundle that closes the pore at the cytoplasmic border of the membrane. Allosteric regulation of the pore by the cytoplasmic domains is mediated through extensive interactions between the central domains and the channel domain. These structural features explain high ion conductance by RyRs and the long-range allosteric regulation of channel activities.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338550/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4338550/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yan, Zhen -- Bai, Xiao-chen -- Yan, Chuangye -- Wu, Jianping -- Li, Zhangqiang -- Xie, Tian -- Peng, Wei -- Yin, Chang-cheng -- Li, Xueming -- Scheres, Sjors H W -- Shi, Yigong -- Yan, Nieng -- MC_UP_A025_1013/Medical Research Council/United Kingdom -- England -- Nature. 2015 Jan 1;517(7532):50-5. doi: 10.1038/nature14063. Epub 2014 Dec 15.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉1] State Key Laboratory of Bio-membrane and Membrane Biotechnology, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China [2] Ministry of Education Key Laboratory of Protein Science, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China [3] Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China. ; MRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Cambridge CB2 0QH, UK. ; 1] Ministry of Education Key Laboratory of Protein Science, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China [2] Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China. ; 1] State Key Laboratory of Bio-membrane and Membrane Biotechnology, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China [2] Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China. ; Department of Biophysics, the Health Science Center &Center for Protein Science, Peking University, Beijing 100191, China. ; Center for Structural Biology, Tsinghua-Peking Joint Center for Life Sciences, School of Life Sciences and School of Medicine, Tsinghua University, Beijing 100084, China.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25517095" target="_blank"〉PubMed〈/a〉
    Keywords: Algorithms ; Allosteric Regulation ; Animals ; Cryoelectron Microscopy ; Ion Channel Gating ; Models, Molecular ; Molecular Weight ; Protein Multimerization ; Protein Structure, Tertiary ; Rabbits ; Ryanodine Receptor Calcium Release Channel/*chemistry/metabolism/*ultrastructure ; Sarcoplasmic Reticulum/chemistry ; Tacrolimus Binding Protein 1A/chemistry/metabolism/ultrastructure ; Zinc Fingers
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    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 14
    Publication Date: 2014-10-14
    Description: Sterols are essential biological molecules in the majority of life forms. Sterol reductases including Delta(14)-sterol reductase (C14SR, also known as TM7SF2), 7-dehydrocholesterol reductase (DHCR7) and 24-dehydrocholesterol reductase (DHCR24) reduce specific carbon-carbon double bonds of the sterol moiety using a reducing cofactor during sterol biosynthesis. Lamin B receptor (LBR), an integral inner nuclear membrane protein, also contains a functional C14SR domain. Here we report the crystal structure of a Delta(14)-sterol reductase (MaSR1) from the methanotrophic bacterium Methylomicrobium alcaliphilum 20Z (a homologue of human C14SR, LBR and DHCR7) with the cofactor NADPH. The enzyme contains ten transmembrane segments (TM1-10). Its catalytic domain comprises the carboxy-terminal half (containing TM6-10) and envelops two interconnected pockets, one of which faces the cytoplasm and houses NADPH, while the other one is accessible from the lipid bilayer. Comparison with a soluble steroid 5beta-reductase structure suggests that the reducing end of NADPH meets the sterol substrate at the juncture of the two pockets. A sterol reductase activity assay proves that MaSR1 can reduce the double bond of a cholesterol biosynthetic intermediate, demonstrating functional conservation to human C14SR. Therefore, our structure as a prototype of integral membrane sterol reductases provides molecular insight into mutations in DHCR7 and LBR for inborn human diseases.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285568/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4285568/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Xiaochun -- Roberti, Rita -- Blobel, Gunter -- P41 GM111244/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- England -- Nature. 2015 Jan 1;517(7532):104-7. doi: 10.1038/nature13797. Epub 2014 Oct 12.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory of Cell Biology, Howard Hughes Medical Institute, The Rockefeller University, New York, New York 10065, USA. ; Department of Experimental Medicine, University of Perugia, Perugia 06132, Italy.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/25307054" target="_blank"〉PubMed〈/a〉
    Keywords: Binding Sites ; Catalytic Domain ; Cell Membrane/*metabolism ; Cholesterol/biosynthesis ; Crystallography, X-Ray ; Humans ; Membrane Proteins/chemistry/metabolism ; Methylococcaceae/*enzymology ; Models, Molecular ; NADP/chemistry/metabolism ; Oxidoreductases/*chemistry/*metabolism ; Oxidoreductases Acting on CH-CH Group Donors/chemistry/genetics/metabolism ; Receptors, Cytoplasmic and Nuclear/chemistry/genetics ; Sterols/metabolism
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  • 15
    Publication Date: 2018-04-03
    Description: Author(s): Q. L. Li, R. Wang, K. X. Xie, X. X. Li, C. Zheng, R. X. Cao, B. F. Miao, L. Sun, B. G. Wang, and H. F. Ding We present a theoretical study of the Kondo effect for a magnetic atom placed inside nanocorrals using Green's function calculations. Based on the standard mapping of the Anderson impurity model to a one-dimensional chain model, we formulate a weak-coupling theory to study the Anderson impurities in... [Phys. Rev. B 97, 155401] Published Mon Apr 02, 2018
    Keywords: Surface physics, nanoscale physics, low-dimensional systems
    Print ISSN: 1098-0121
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  • 16
    Publication Date: 2017-12-30
    Description: Author(s): C. Zheng, Q. L. Li, B. F. Miao, L. Sun, R. Wang, X. X. Li, and H. F. Ding We present the study of the effect of both magnetic and potential scattering ( M and U ) of magnetic impurities on the local electronic structures on a topological insulator. For single impurity, the local density of states (LDOS) shows distinct patterns of two resonance states with the positions depe... [Phys. Rev. B 96, 235444] Published Fri Dec 29, 2017
    Keywords: Surface physics, nanoscale physics, low-dimensional systems
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  • 17
    Publication Date: 2013-11-13
    Description: Author(s): J.-G. Cheng, T. Ishii, H. Kojitani, K. Matsubayashi, A. Matsuo, X. Li, Y. Shirako, J.-S. Zhou, J. B. Goodenough, C. Q. Jin, M. Akaogi, and Y. Uwatoko BaIrO 3 adopts the 9R polytype structure if it is synthesized at ambient pressure. High-pressure and high-temperature treatments up to 10 GPa have led to other 5H and 6H polytype phases, which are quenchable to the ambient condition. However, the single-phase 3C perovskite, the end member of polytype... [Phys. Rev. B 88, 205114] Published Tue Nov 12, 2013
    Keywords: Electronic structure and strongly correlated systems
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  • 18
    Publication Date: 2018-03-12
    Description: Author(s): S. Anghel, F. Passmann, A. Singh, C. Ruppert, A. V. Poshakinskiy, S. A. Tarasenko, J. N. Moore, G. Yusa, T. Mano, T. Noda, X. Li, A. D. Bristow, and M. Betz Electron spin transport and dynamics are investigated in a single, high-mobility, modulation-doped, GaAs quantum well using ultrafast two-color Kerr-rotation microspectroscopy, supported by qualitative kinetic theory simulations of spin diffusion and transport. Evolution of the spins is governed by ... [Phys. Rev. B 97, 125410] Published Fri Mar 09, 2018
    Keywords: Surface physics, nanoscale physics, low-dimensional systems
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  • 19
    Publication Date: 2016-02-24
    Description: Author(s): L. Lin, H. M. Zhang, M. F. Liu, Shoudong Shen, S. Zhou, D. Li, X. Wang, Z. B. Yan, Z. D. Zhang, Jun Zhao, Shuai Dong, and J.-M. Liu Hexagonal LuFe O 3 has drawn a lot of research attention due to its contentious room-temperature multiferroicity. Due to the instability of hexagonal phase in the bulk form, most experimental studies focused on LuFe O 3 thin films which can be stabilized by strain using proper substrates. Here we report… [Phys. Rev. B 93, 075146] Published Tue Feb 23, 2016
    Keywords: Electronic structure and strongly correlated systems
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  • 20
    Publication Date: 2017-09-20
    Description: Author(s): Wei Tang, Lei Chen, Wei Li, X. C. Xie, Hong-Hao Tu, and Lei Wang In addition to the celebrated Affleck-Ludwig entropy originating from the open boundaries of the path-integral manifold, recent research has shown that the entropy correction on nonorientable manifolds such as the Klein bottle is also a universal characterization of critical systems with an emergent conformal field theory (CFT). Here, the authors show that the Klein bottle entropy can be interpreted as a boundary effect by transforming the Klein bottle into an orientable manifold, whereby the Klein bottle entropy bears a resemblance to the Affleck-Ludwig entropy. The authors then propose a generic scheme to extract these universal boundary entropies from lattice models. Numerical results for the q -state Potts model are compared with the CFT predictions. [Phys. Rev. B 96, 115136] Published Tue Sep 19, 2017
    Keywords: Electronic structure and strongly correlated systems
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