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  • Meteorology and Climatology  (3)
  • Relativistic Nuclear Collisions  (3)
  • Protein Structure, Tertiary  (2)
  • 2015-2019  (2)
  • 2010-2014  (5)
  • 2005-2009  (1)
  • 1970-1974
  • 1930-1934
  • 1
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    Heavy baryonic resonances, multistrange hadrons, and equilibration at energies available at the GSI Schwerionensynchrotron, SIS18 (2016)
    American Physical Society (APS)
    Details
    Publication Date: 2016-06-30
    Description: Author(s): J. Steinheimer, M. Lorenz, F. Becattini, R. Stock, and M. Bleicher We study the details and time dependence of particle production in nuclear collisions at a fixed target beam energy of E lab = 1.76 A GeV with the UrQMD transport model. We find that the previously proposed production mechanisms for multistrange hadrons ϕ and Ξ are possible due to secondary interactions… [Phys. Rev. C 93, 064908] Published Wed Jun 29, 2016
    Keywords: Relativistic Nuclear Collisions
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
    Topics: Physics
    Published by American Physical Society (APS)
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  • 2
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    Hadronization and hadronic freeze-out in relativistic nuclear collisions (2012)
    American Physical Society (APS)
    Details
    Publication Date: 2012-04-24
    Description: Author(s): Francesco Becattini, Marcus Bleicher, Thorsten Kollegger, Michael Mitrovski, Tim Schuster, and Reinhard Stock We analyze hadrochemical freeze-out in central Pb + Pb collisions at CERN SPS energies, employing the hybrid version of the Ultrarelativistic Quantum Molecular Dynamics model, which describes the transition from a hydrodynamic stage to hadrons by the Cooper-Frye mechanism, and matches to a final had... [Phys. Rev. C 85, 044921] Published Mon Apr 23, 2012
    Keywords: Relativistic Nuclear Collisions
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
    Topics: Physics
    Published by American Physical Society (APS)
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  • 3
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    Centrality dependence of hadronization and chemical freeze-out conditions in heavy ion collisions at sNN=2.76 TeV (2014)
    American Physical Society (APS)
    Details
    Publication Date: 2014-11-15
    Description: Author(s): Francesco Becattini, Marcus Bleicher, Eduardo Grossi, Jan Steinheimer, and Reinhard Stock We present an analysis of hadronic multiplicities measured in Pb-Pb collisions at sNN=2.76 TeV as a function of the collision centrality within the statistical hadronization model. Evidence is found of a dependence of the chemical freeze-out temperature as a function of centrality, with a slow rise ... [Phys. Rev. C 90, 054907] Published Fri Nov 14, 2014
    Keywords: Relativistic Nuclear Collisions
    Print ISSN: 0556-2813
    Electronic ISSN: 1089-490X
    Topics: Physics
    Published by American Physical Society (APS)
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  • 4
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    Structure of the torque ring of the flagellar motor and the molecular basis for rotational switching (2010)
    Nature Publishing Group (NPG)
    Details
    Publication Date: 2010-08-03
    Description: The flagellar motor drives the rotation of flagellar filaments at hundreds of revolutions per second, efficiently propelling bacteria through viscous media. The motor uses the potential energy from an electrochemical gradient of cations across the cytoplasmic membrane to generate torque. A rapid switch from anticlockwise to clockwise rotation determines whether a bacterium runs smoothly forward or tumbles to change its trajectory. A protein called FliG forms a ring in the rotor of the flagellar motor that is involved in the generation of torque through an interaction with the cation-channel-forming stator subunit MotA. FliG has been suggested to adopt distinct conformations that induce switching but these structural changes and the molecular mechanism of switching are unknown. Here we report the molecular structure of the full-length FliG protein, identify conformational changes that are involved in rotational switching and uncover the structural basis for the formation of the FliG torque ring. This allows us to propose a model of the complete ring and switching mechanism in which conformational changes in FliG reverse the electrostatic charges involved in torque generation.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159035/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3159035/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lee, Lawrence K -- Ginsburg, Michael A -- Crovace, Claudia -- Donohoe, Mhairi -- Stock, Daniela -- MC_U105170645/Medical Research Council/United Kingdom -- P41 RR007707/RR/NCRR NIH HHS/ -- P41 RR007707-17/RR/NCRR NIH HHS/ -- RR007707/RR/NCRR NIH HHS/ -- Y1-CO-1020/CO/NCI NIH HHS/ -- Y1-GM-1104/GM/NIGMS NIH HHS/ -- Medical Research Council/United Kingdom -- England -- Nature. 2010 Aug 19;466(7309):996-1000. doi: 10.1038/nature09300. Epub 2010 Aug 1.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Structural and Computational Biology Division, The Victor Chang Cardiac Research Institute, Lowy Packer Building, 405 Liverpool Street, Darlinghurst, New South Wales 2010, Australia.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20676082" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Bacterial Proteins/*chemistry/genetics/*metabolism ; Flagella/*chemistry/genetics/*physiology ; Models, Molecular ; Molecular Motor Proteins/*chemistry/genetics/metabolism ; Molecular Sequence Data ; Mutation ; Protein Conformation ; Protein Multimerization ; Protein Structure, Tertiary ; *Rotation ; Static Electricity ; Structure-Activity Relationship ; Thermotoga maritima/chemistry ; *Torque
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
    Published by Nature Publishing Group (NPG)
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  • 5
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    Mass spectrometry of intact V-type ATPases reveals bound lipids and the effects of nucleotide binding (2011)
    American Association for the Advancement of Science (AAAS)
    Details
    Publication Date: 2011-10-25
    Description: The ability of electrospray to propel large viruses into a mass spectrometer is established and is rationalized by analogy to the atmospheric transmission of the common cold. Much less clear is the fate of membrane-embedded molecular machines in the gas phase. Here we show that rotary adenosine triphosphatases (ATPases)/synthases from Thermus thermophilus and Enterococcus hirae can be maintained intact with membrane and soluble subunit interactions preserved in vacuum. Mass spectra reveal subunit stoichiometries and the identity of tightly bound lipids within the membrane rotors. Moreover, subcomplexes formed in solution and gas phases reveal the regulatory effects of nucleotide binding on both ATP hydrolysis and proton translocation. Consequently, we can link specific lipid and nucleotide binding with distinct regulatory roles.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927129/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3927129/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Zhou, Min -- Morgner, Nina -- Barrera, Nelson P -- Politis, Argyris -- Isaacson, Shoshanna C -- Matak-Vinkovic, Dijana -- Murata, Takeshi -- Bernal, Ricardo A -- Stock, Daniela -- Robinson, Carol V -- 088150/Wellcome Trust/United Kingdom -- 099141/Wellcome Trust/United Kingdom -- G1000819/Medical Research Council/United Kingdom -- Wellcome Trust/United Kingdom -- New York, N.Y. -- Science. 2011 Oct 21;334(6054):380-5. doi: 10.1126/science.1210148.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, UK.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22021858" target="_blank"〉PubMed〈/a〉
    Keywords: Adenosine Triphosphatases/*chemistry/*metabolism ; Adenosine Triphosphate/*metabolism ; Bacterial Proteins/*chemistry/*metabolism ; Binding Sites ; Cardiolipins/analysis/metabolism ; Enterococcus/enzymology ; Hydrolysis ; Hydrophobic and Hydrophilic Interactions ; Mass Spectrometry ; Membrane Lipids/analysis/*metabolism ; Models, Molecular ; Phosphatidylethanolamines/analysis/metabolism ; Protein Conformation ; Protein Multimerization ; Protein Structure, Tertiary ; Protein Subunits/chemistry/metabolism ; Spectrometry, Mass, Electrospray Ionization ; Thermus thermophilus/*enzymology ; Vacuolar Proton-Translocating ATPases/*chemistry/*metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
    Published by American Association for the Advancement of Science (AAAS)
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  • 6
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    Development of a Climate-Data Record (CDR) of the Surface Temperature of the Greenland Ice Sheet (2010)
    In:  CASI
    Details
    Publication Date: 2019-07-19
    Description: Regional "clear sky" surface temperature increases since the early 1980s in the Arctic, measured using Advanced Very High Resolution Radiometer (AVHRR) infrared data, range from 0.57+/-0.02 deg C to 72+/-0.10 deg C per decade. Arctic warming has important implications for ice-sheet mass balance because much of the periphery of the Greenland Ice Sheet is already near 0 deg C during the melt season, and is thus vulnerable to rapid melting if temperatures continue to increase. An increase in melting of the ice sheet would accelerate sea-level rise, an issue affecting potentially billions of people worldwide. To quantify the ice-surface temperature (IST) of the Greenland Ice Sheet, and to provide an IST dataset of Greenland for modelers that provides uncertainties, we are developing a climate-data record (CDR) of daily "clear-sky" IST of the Greenland Ice Sheet, from 1982 to the present using AVHRR (1982 - present) and Moderate-Resolution Imaging Spectroradiometer (MODIS) data (2000 - present) at a resolution of approximately 5 km. Known issues being addressed in the production of the CDR are: time-series bias caused by cloud cover (surface temperatures can be different under clouds vs. clear areas) and cross-calibration in the overlap period between AVHRR instruments, and between AVHRR and MODIS instruments. Because of uncertainties, mainly due to clouds, time-series of satellite IST do not necessarily correspond with actual surface temperatures. The CDR will be validated by comparing results with automatic-weather station data and with satellite-derived surface-temperature products and biases will be calculated.
    Keywords: Meteorology and Climatology
    Type: Association of American Geographer''s Annual Meeting; Apr 17, 2010; Washington, DC; United States
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  • 7
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    A Climate-Data Record of the "Clear-Sky" Surface Temperature of the Greenland Ice Sheet (2009)
    In:  CASI
    Details
    Publication Date: 2019-07-27
    Description: We are developing a climate-data record (CDR of daily "clear-sky" ice-surface temperature (IST) of the Greenland Ice Sheet, from 1982 to the present using Advanced Very High Resolution Radiometer (AVHRR) (1982 - present) and Moderate-Resolution Imaging Spectroradiometer (MODIS) data (2000 - present) at a resolution of approximately 5 km. The CDR will be continued in the National Polar-orbiting Operational Environmental Satellite System Visible/Infrared Imager Radiometer Suite era. Two algorithms remain under consideration. One algorithm under consideration is based on the split-window technique used in the Polar Pathfinder dataset (Fowler et al., 2000 & 21007). Another algorithm under consideration, developed by Comiso (2006), uses a single channel of AVHRR data (channel 4) in conjunction with meteorological-station data to account for atmospheric effects and drift between AVHRR instruments. Known issues being addressed in the production of the CDR are: tune-series bias caused by cloud cover (surface temperatures can be different under clouds vs. clear areas) and cross-calibration in the overlap period between AVHRR instruments, and between AVHRR and MODIS instruments. Because of uncertainties, mainly due to clouds (Stroeve & Steffen, 1998; Wang and Key, 2005; Hall et al., 2008 and Koenig and Hall, submitted), time-series of satellite 1S'1" do not necessarily correspond to actual surface temperatures. The CDR will be validated by comparing results with automatic-,",eather station (AWS) data and with satellite-derived surface-temperature products. Regional "clear-sky" surface temperature increases in the Arctic, measured from AVHRR infrared data, range from 0.57+/-0.02 deg C (Wang and Key, 2005) to 0.72+/-0.10 deg C (Comiso, 2006) per decade since the early 1980s. Arctic warming has important implications for ice-sheet mass balance because much of the periphery of the Greenland Ice Sheet is already near 0 deg C during the melt season, and is thus vulnerable to rapid melting if temperatures continue to increase. References
    Keywords: Meteorology and Climatology
    Type: 2009 AGU Fall Meeting; 14?18 Dec. 2009; San Francisco, CA; United States
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  • 8
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    Positive Trend in the Antarctic Sea Ice Cover and Associated Changes in Surface Temperature (2017)
    In:  CASI
    Details
    Publication Date: 2019-07-13
    Description: The Antarctic sea ice extent has been slowly increasing contrary to expected trends due to global warming and results from coupled climate models. After a record high extent in 2012 the extent was even higher in 2014 when the magnitude exceeded 20 10(exp 6) km(exp 2) for the first time during the satellite era. The positive trend is confirmed with newly reprocessed sea ice data that addressed inconsistency issues in the time series. The variability in sea ice extent and ice area was studied alongside surface ice temperature for the 34-yr period starting in 1981, and the results of the analysis show a strong correlation of 0.94 during the growth season and 0.86 during the melt season. The correlation coefficients are even stronger with a one-month lag in surface temperature at 0.96 during the growth season and 0.98 during the melt season, suggesting that the trend in sea ice cover is strongly influenced by the trend in surface temperature. The correlation with atmospheric circulation as represented by the southern annular mode (SAM) index appears to be relatively weak. A case study comparing the record high in 2014 with a relatively low ice extent in 2015 also shows strong sensitivity to changes in surface temperature. The results suggest that the positive trend is a consequence of the spatial variability of global trends in surface temperature and that the ability of current climate models to forecast sea ice trend can be improved through better performance in reproducing observed surface temperatures in the Antarctic region.
    Keywords: Meteorology and Climatology
    Type: GSFC-E-DAA-TN53276 , Journal of Climate (ISSN 0894-8755) (e-ISSN 1520-0442); 30; 6; 2251-2267
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