ALBERT

Description: The Quaternary history of Beringia and of the Arctic–Pacific marine connection via the Bering Strait is poorly understood because of the fragmentary stratigraphic record from this region. We report new borehole and seismic-reflection data collected in 2006 in the southwestern Chukchi Sea. Sediment samples were analyzed for magnetic properties, grain size, heavy minerals, and biostratigraphic proxies (spores and pollen, foraminifers, ostracodes, diatoms, and aquatic palynomorphs). Two shallow boreholes drilled between the Chukotka Peninsula and the Wrangel Island recovered sediments of two principal stratigraphic units with a distinct unconformity between them. Based on predominantly reverse paleomagnetic polarity of the lower unit and pollen spectra indicative of forested coasts and climate warmer than present, the age of this unit is estimated as Pliocene to early Pleistocene (broadly between ca. 5 and 2 Ma). Attendant sedimentary environments were likely alluvial to nearshore marine. These deposits can be correlated to the seismic unit infilling valleys incised into sedimentary bedrock across much of the study area, and possibly deposited during a transgression following the opening of the Bering Strait. The upper unit from both boreholes contains Holocene 14C ages and is clearly related to the last, postglacial transgression. Holocene sediments in Borehole 2 indicate fast deposition at the early stages of flooding (between ca. 11 and 9 ka) to very low deposition, possibly related to expansive sea ice. Closer to shore, deposition at Borehole 1 resumed much later (ca. 2 ka), likely due to a change in the pattern of coastal erosional processes and/or the demise of a landbridge between the Chukotka Peninsula and the Wrangel Island inferred from studies on mammoth distribution.

Description: Highlights: • New predatory protist (Tunicaraptor) with unique morphology is related to animals • Tunicaraptor calls into question many of the well-accepted relationships in Holozoa • Tunicaraptor possesses a unique combination of “animal-specific” gene products • Eukaryovorous flagellates may represent a major share of unicellular animal relatives The origin of animals is one of the most intensely studied evolutionary events, and our understanding of this transition was greatly advanced by analyses of unicellular relatives of animals, which have shown many “animal-specific” genes actually arose in protistan ancestors long before the emergence of animals [1–3]. These genes have complex distributions, and the protists have diverse lifestyles, so understanding their evolutionary significance requires both a robust phylogeny of animal relatives and a detailed understanding of their biology [4, 5]. But discoveries of new animal-related lineages are rare and historically biased to bacteriovores and parasites. Here, we characterize the morphology and transcriptome content of a new animal-related lineage, predatory flagellate Tunicaraptor unikontum. Tunicaraptor is an extremely small (3–5 μm) and morphologically simple cell superficially resembling some fungal zoospores, but it survives by preying on other eukaryotes, possibly using a dedicated but transient “mouth,” which is unique for unicellular opisthokonts. The Tunicaraptor transcriptome encodes a full complement of flagellar genes and the flagella-associated calcium channel, which is only common to predatory animal relatives and missing in microbial parasites and grazers. Tunicaraptor also encodes several major classes of animal cell adhesion molecules, as well as transcription factors and homologs of proteins involved in neurodevelopment that have not been found in other animal-related lineages. Phylogenomics, including Tunicaraptor, challenges the existing framework used to reconstruct the evolution of animal-specific genes and emphasizes that the diversity of animal-related lineages may be better understood only once the smaller, more inconspicuous animal-related lineages are better studied.

Description: Understanding the influence of growth temperature and carbon dioxide (CO2) on seed quality in terms of seed composition, subsequent seedling emergence and early seedling vigour is important under present and future climates. The objective of this study was to determine the combined effects of elevated temperature and CO2 during seed-filling of parent plants on seed composition, subsequent seedling emergence and seedling vigour of red kidney bean (Phaseolus vulgaris). Plants of cultivar ‘Montcalm’, were grown at daytime maximum/nighttime minimum sinusoidal temperature regimes of 28/18 and 34/24 °C at ambient CO2 (350 μmol mol−1) and at elevated CO2 (700 μmol mol−1) from emergence to maturity. Seed size and seed composition at maturity and subsequent per cent emergence, early seedling vigour (rate of development) and seedling dry matter production were measured. Elevated CO2 did not influence seed composition, emergence, or seedling vigour of seeds produced either at 28/18 or 34/24 °C. Seed produced at 34/24 °C had smaller seed size, decreased glucose concentration, but significantly increased concentrations of sucrose and raffinose compared to 28/18 °C. Elevated growth temperatures during seed production decreased the subsequent per cent emergence and seedling vigour of the seeds and seedling dry matter production of seed produced either at ambient or elevated CO2.

Description: The Gulf of Cadiz, off SW Iberia and the NW Moroccan margin, straddles the cryptic plate boundary between Africa and Eurasia, a region where the orogenic Alpine compressive deformation in the continental collision zone passes laterally to the west to strike-slip deformation. A set of new multibeam bathymetry, multi-channel and single-channel seismic data presented here image the main morphological features of tectonic origin of a significant part of the Gulf of Cadiz from the continental shelf to the abyssal plain. These morphotectonic features are shown to result from the reactivation of deeply rooted faults that changed their kinematics from the early Mesozoic rifting, through the Late Cretaceous–Paleogene collision, to the Pliocene–Quaternary thrusting and wrenching. The old faults control deep incised, more than 100 km long canyons and valleys. Several effects of neotectonics on deep water seabed are shown. These include: i) the complex morphology caused by wrenching on the 230 km long WNW–ESE faults that produced en echelon folds on the sediments; ii) the formation of up to 5 km wide crescent shaped scours at roughly 4 km water depth by reactivation of thrusts; iii) 10 km long creep folds on the continental slope; and iv) the formation of landslides on active fault escarpments. The present day deformation is partitioned on NE–SW thrusts and WNW–ESE to W–E strike-slip faults and is propagating northwards on N–S trending thrusts along the West Iberia Margin from 35.5°N to 38°N, which should be considered for seismic hazard.

Description: Multidisciplinary study of a key section on the Laptev Sea Coast (Bykovsky Peninsula, east Lena Delta) in 1998–2001 provides the most complete record of Middle and Late Weichselian environments in the East Siberian Arctic. The 40-m high Mamontovy Khayata cliff is a typical Ice Complex section built of icy silts with a network of large syngenetic polygonal ice wedges, and is richly fossiliferous. In combination with pollen, plant macrofossil and mammal fossils, a sequence of ca 70 insect samples provides a new interpretation of the environment and climate of the area between ca 50 and 12 ka. The large number of radiocarbon dates from the section, together with an extensive 14C database on mammal bones, allows chronological correlation of the various proxies. The Bykovsky record shows how climate change, and the Last Glacial Maximum in particular, affected terrestrial organisms such as insects and large grazing mammals. Both during the presumed “Karginsky Interstadial” (MIS 3) and the Sartanian Glacial (MIS 2), the vegetation remained a mosaic arctic grassland with relatively high diversity of grasses and herbs and dominance of xeric habitats: the tundra-steppe type. This biome was supported by a constantly very continental climate, caused by low sea level and enormous extension of shelf land. Variations within the broad pattern were caused mainly by fluctuations in summer temperature, related to global trends but overprinted by the effect of continentality. No major changes in humidity were observed nor were advances of modern-type forest or forest-tundra recorded, suggesting a major revision of the “Karginsky Interstadial” paradigm. The changing subtypes of the tundra-steppe environment were persistently favourable for mammalian grazers, which inhabited the shelf lowlands throughout the studied period. Mammal population numbers were lowered during the LGM, especially toward its end, and then flourished in a short, but impressive peak in the latest Weichselian, just before the collapse of the tundra-steppe biome. Throughout MIS 3 and MIS 2, the climate remained very favourable for the aggradation of permafrost. No events of regional permafrost degradation were observed in the continuous Bykovsky sequence until the very end of the Pleistocene.

Description: We investigated the influence of the composition of the vertical particle flux on the removal of particle reactive natural radionuclides (Th-230 and Pa-231) from the water column to the sediments. Radionuclide concentrations determined in sediment traps moored in the western, central and eastern Arabian Sea were related to the major components (carbonate, particulate organic matter (POC), opal, lithogenic material) of the particle flux. These data were combined with sediment trap data previously published from the Southern Ocean, Equatorial Pacific and North Atlantic [Z. Chase, R.F. Anderson, M.Q. Fleisher, P.W. Kubik, The influence of particle composition and particle flux on scavenging of Th, Pa and Be in the ocean, Earth Planet. Sci. Lett. 204 (2002) 215-229; J.C. Scholten, F. Fietzke, S. Vogler, M. Rutgers van der Loeff, A. Mangini, W Koeve, J. Waniek. P. Stoffers, A. Antia, J. Kass, Trapping efficiencies of sediment traps from the deep eastern North Atlantic: The Th-230 calibration, Deep Sea Research 1148 (2001) 2383-2408]. The correlations observed between the particle-dissolved distribution coefficients (K-d) of Th-230 and Pa-231 and the concentrations of the particle types depend on the sediment trap data set used. This result suggests that scavenging affinities of the nuclides differ between oceanic regions. Several factors (K-d values, reactive surface areas of particles, inter-correlations in closed data set) can, however, influence the observed relationships and thus hamper the interpretation of these correlation coefficients as a measure of relative scavenging affinities of the nuclides to the particle types investigated. The mean fractionation factor (F(Pa/Th)=K-d(Pa)/(K)d(Th)) from the Equatorial Pacific (F=0.11+/-0.03) is similar to that from the North Atlantic (F(Pa/Th)=0.077+/-0.026), and both are lower than the factors from the Arabian Sea (F(Pa/Th)=0.35+/-0.12) and from the Southern Ocean (F(Pa/Th) 0.87+/-0.4). For opal concentrations exceeding similar to60%, an increase in the fractionation factors is observed causing a higher mean fractionation factor for the Southern Ocean trap data set. For the other areas investigated, differences in the mean fractionation factors cannot be related to the particles types considered. In the Arabian Sea, seasonally variable Pa-231(ex)/Th-230(ex) ratios observed in the sediment traps as well as differences of the ratios between recently deposited phytodetritus (fluff) and normal surface sediments indicate seasonal changes in scavenging processes which the generally accepted reversible scavenging models do not envisage. We assume that variable sinking rates of particles, and/or particles not considered in this study (e.g. colloids, manganese oxides, transparent exopolymer particles) may play an important but as yet unexplored role in deep-water scavenging processes. (C) 2004 Elsevier B.V. All rights reserved.

Description: A combination of 2-year-long mooring-based measurements and snapshot conductivity–temperature–depth (CTD) observations at the continental slope off Spitsbergen (81°30′N, 31°00′E) is used to demonstrate a significant hydrographic seasonal signal in Atlantic Water (AW) that propagates along the Eurasian continental slope in the Arctic Ocean. At the mooring position this seasonal signal dominates, contributing up to 50% of the total variance. Annual temperature maximum in the upper ocean (above 215 m) is reached in mid-November, when the ocean in the area is normally covered by ice. Distinct division into ‘summer’ (warmer and saltier) and ‘winter’ (colder and fresher) AW types is revealed there. Estimated temperature difference between the ‘summer’ and ‘winter’ waters is 1.2 °C, which implies that the range of seasonal heat content variations is of the same order of magnitude as the mean local AW heat content, suggesting an important role of seasonal changes in the intensity of the upward heat flux from AW. Although the current meter observations are only 1-year long, they hint at a persistent, highly barotropic current with little or no seasonal signal attached.

Description: Absolute abundances (concentrations) of dinoflagellate cysts are often determined through the addition of Lycopodium clavatum marker-grains as a spike to a sample before palynological processing. An interlaboratory calibration exercise was set up in order to test the comparability of results obtained in different laboratories, each using its own preparation method. Each of the 23 laboratories received the same amount of homogenized splits of four Quaternary sediment samples. The samples originate from different localities and consisted of a variety of lithologies. Dinoflagellate cysts were extracted and counted, and relative and absolute abundances were calculated. The relative abundances proved to be fairly reproducible, notwithstanding a need for taxonomic calibration. By contrast, excessive loss of Lycopodium spores during sample preparation resulted in non-reproducibility of absolute abundances. Use of oxidation, KOH, warm acids, acetolysis, mesh sizes larger than 15 μm and long ultrasonication (N1 min) must be avoided to determine reproducible absolute abundances. The results of this work therefore indicate that the dinoflagellate cyst worker should make a choice between using the proposed standard method which circumvents critical steps, adding Lycopodium tablets at the end of the preparation and using an alternative method.

Description: Microsporidia are intracellular eukaryotic parasites that can infect a wide range of animal hosts with several genera causing opportunistic infections in immunodeficient patients. Their spore wall and their unique extrusion apparatus, which has the form of a long polar tube, confer resistance of these parasites against the environment and during host-cell invasion. In contrast to parasites of vertebrates, the spore-wall and polar-tube proteins of many microsporidia species still remain to be characterized, even though a great number of microsporidia infect invertebrates. Here, we have identified one spore-wall protein and three polar-tube proteins of the microsporidia Paranosema grylli that infects the cricket Gryllus bimaculatus. Incubation of intact spores with an alkaline–saline solution resulted in the selective extraction of a major 40 kDa protein. A wash of the discharged (or destroyed) spores with SDS and the following solubilization of their polar tubes with 50–75% 2-mercaptoethanol extracted a major protein of ca. 56 kDa. When the polar tubes were solubilized in the presence of SDS, two additional proteins of 46 and 34 kDa were extracted. Antibodies specific for these extracted proteins were generated and isolated by incubation of immune sera with the protein bands that had been transferred to nitrocellulose. Western blotting demonstrated the cross-reactivity of the anti-p46 and anti-p34 antibodies. Immuno-electron microscopy with the anti-p40 antibody revealed specific decoration of the microsporidia exospore. The 56, 46 and 34 kDa proteins were characterized as polar-tube components due to the clear antibody labeling of the polar filament.