ALBERT

Description: Iron (Fe) is an essential micronutrient for marine microbial organisms, and low supply controls productivity in large parts of the world’s ocean. The high latitude North Atlantic is seasonally Fe limited, but Fe distributions and source strengths are poorly constrained. Surface ocean dissolved Fe (DFe) concentrations were low in the study region (〈0.1 nM) in summer 2010, with significant perturbations during spring 2010 in the Iceland Basin as a result of an eruption of the Eyjafjallajökull volcano (up to 2.5 nM DFe near Iceland) with biogeochemical consequences. Deep water concentrations in the vicinity of the Reykjanes Ridge system were influenced by pronounced sediment resuspension, with indications for additional inputs by hydrothermal vents, with subsequent lateral transport of Fe and manganese plumes of up to 250–300 km. Particulate Fe formed the dominant pool, as evidenced by 4–17 fold higher total dissolvable Fe compared with DFe concentrations, and a dynamic exchange between the fractions appeared to buffer deep water DFe. Here we show that Fe supply associated with deep winter mixing (up to 103 nmol m−2 d−1) was at least ca. 4–10 times higher than atmospheric deposition, diffusive fluxes at the base of the summer mixed layer, and horizontal surface ocean fluxes.

Description: Anthropogenic emissions completely overwhelmed natural marine lead (Pb) sources during the past century, predominantly due to leaded petrol usage. Here, based on Pb isotope measurements, we reassess the importance of natural and anthropogenic Pb sources to the tropical North Atlantic following the nearly complete global cessation of leaded petrol use. Significant proportions of up to 30–50% of natural Pb, derived from mineral dust, are observed in Atlantic surface waters, reflecting the success of the global effort to reduce anthropogenic Pb emissions. The observation of mineral dust derived Pb in surface waters is governed by the elevated atmospheric mineral dust concentration of the North African dust plume and the dominance of dry deposition for the atmospheric aerosol flux to surface waters. Given these specific regional conditions, emissions from anthropogenic activities will remain the dominant global marine Pb source, even in the absence of leaded petrol combustion.

Description: The marine iodine cycle has significant impacts on air quality and atmospheric chemistry. Specifically, the reaction of iodide with ozone in the top few micrometres of the surface ocean is an important sink for tropospheric ozone (a pollutant gas) and the dominant source of reactive iodine to the atmosphere. Sea surface iodide parameterisations are now being implemented in air quality models, but these are currently a major source of uncertainty. Relatively little observational data is available to estimate the global surface iodide concentrations, and this data has not hitherto been openly available in a collated, digital form. Here we present all available sea surface (〈20 m depth) iodide observations. The dataset includes values digitised from published manuscripts, published and unpublished data supplied directly by the originators, and data obtained from repositories. It contains 1342 data points, and spans latitudes from 70°S to 68°N, representing all major basins. The data may be used to model sea surface iodide concentrations or as a reference for future observations.

Description: Subduction of oceanic crust and the formation of volcanic arcs above the subduction zone are important components in Earth’s geological and geochemical cycles. Subduction consumes and recycles material from the oceanic plates, releasing fluids and gases that enhance magmatic activity, feed hydrothermal systems, generate ore deposits and nurture chemosynthetic biological communities. Among the first lavas to erupt at the surface from a nascent subduction zone are a type classified as boninites. These lavas contain information about the early stages of subduction, yet because most subduction systems on Earth are old and well-established, boninite lavas have previously only been observed in the ancient geological record. Here we observe and sample an active boninite eruption occurring at 1,200 m depth at the West Mata submarine volcano in the northeast Lau Basin, southwest Pacific Ocean. We find that large volumes of H2O, CO2 and sulphur are emitted, which we suggest are derived from the subducting slab. These volatiles drive explosive eruptions that fragment rocks and generate abundant incandescent magma-skinned bubbles and pillow lavas. The eruption has been ongoing for at least 2.5 years and we conclude that this boninite eruption is a multi-year, low-mass-transfer-rate eruption. Thus the Lau Basin may provide an important site for the long-term study of submarine volcanic eruptions related to the early stages of subduction.

Description: The direct effects of temperature increases and differences among life-history might affect the impacts of native and invasive predators on recipient communities. Comparisons of functional responses can improve our understanding of underlying processes involved in altering species interaction strengths and may predict the effect of species invading new communities. Therefore, we investigated the functional responses of the mourning gecko Lepidodactylus lugubris (Duméril & Bibron, 1836) to explore how temperature, body-size and prey density alter gecko predatory impacts in ecosystems. We quantified the functional responses of juvenile and adult geckos in single-predator experiments at 20, 23 and 26 °C. Both displayed saturating Type-II functional responses, but juvenile functional responses and the novel Functional Response Ratio were positively affected by temperature as juvenile attack rates (a) increased as a function of increased temperature. Handling times (h) tended to shorten at higher temperature for both predator stages. We demonstrate that the effects of temperature on functional responses of geckos differ across ontogeny, perhaps reflecting life-history stages prioritising growth and maturation or body maintenance. This indicates that temperature-dependent gecko predatory impacts will be mediated by population demographics. We advocate further comparisons of functional responses to understand the invasiveness and future predatory impacts of geckos, and other invasive species globally, as temperatures change.

Description: Landslide-dams, which are often transient, can strongly affect the geomorphology, and sediment and geochemical fluxes, within subaerial fluvial systems. The potential occurrence and impact of analogous landslide-dams in submarine canyons has, however, been difficult to determine due to a scarcity of sufficiently time-resolved observations. Here we present repeat bathymetric surveys of a major submarine canyon, the Congo Canyon, offshore West Africa, from 2005 and 2019. We show how an ~0.09 km3 canyon-flank landslide dammed the canyon, causing temporary storage of a further ~0.4 km3 of sediment, containing ~5 Mt of primarily terrestrial organic carbon. The trapped sediment was up to 150 m thick and extended 〉26 km up-canyon of the landslide-dam. This sediment has been transported by turbidity currents whose sediment load is trapped by the landslide-dam. Our results suggest canyon-flank collapses can be important controls on canyon morphology as they can generate or contribute to the formation of meander cut-offs, knickpoints and terraces. Flank collapses have the potential to modulate sediment and geochemical fluxes to the deep sea and may impact efficiency of major submarine canyons as transport conduits and locations of organic carbon sequestration. This has potential consequences for deep-sea ecosystems that rely on organic carbon transported through submarine canyons.

Description: Metagenomes encode an enormous diversity of proteins, reflecting a multiplicity of functions and activities1,2. Exploration of this vast sequence space has been limited to a comparative analysis against reference microbial genomes and protein families derived from those genomes. Here, to examine the scale of yet untapped functional diversity beyond what is currently possible through the lens of reference genomes, we develop a computational approach to generate reference-free protein families from the sequence space in metagenomes. We analyse 26,931 metagenomes and identify 1.17 billion protein sequences longer than 35 amino acids with no similarity to any sequences from 102,491 reference genomes or the Pfam database3. Using massively parallel graph-based clustering, we group these proteins into 106,198 novel sequence clusters with more than 100 members, doubling the number of protein families obtained from the reference genomes clustered using the same approach. We annotate these families on the basis of their taxonomic, habitat, geographical and gene neighbourhood distributions and, where sufficient sequence diversity is available, predict protein three-dimensional models, revealing novel structures. Overall, our results uncover an enormously diverse functional space, highlighting the importance of further exploring the microbial functional dark matter.

Description: The discovery of atmospheric micro(nano)plastic transport and ocean–atmosphere exchange points to a highly complex marine plastic cycle, with negative implications for human and ecosystem health. Yet, observations are currently limited. In this Perspective, we quantify the processes and fluxes of the marine-atmospheric micro(nano)plastic cycle, with the aim of highlighting the remaining unknowns in atmospheric micro(nano)plastic transport. Between 0.013 and 25 million metric tons per year of micro(nano)plastics are potentially being transported within the marine atmosphere and deposited in the oceans. However, the high uncertainty in these marine-atmospheric fluxes is related to data limitations and a lack of study intercomparability. To address the uncertainties and remaining knowledge gaps in the marine-atmospheric micro(nano)plastic cycle, we propose a future global marine-atmospheric micro(nano)plastic observation strategy, incorporating novel sampling methods and the creation of a comparable, harmonized and global data set. Together with long-term observations and intensive investigations, this strategy will help to define the trends in marine-atmospheric pollution and any responses to future policy and management actions.

Description: Here we show how major rivers can efficiently connect to the deep-sea, by analysing the longest runout sediment flows (of any type) yet measured in action on Earth. These seafloor turbidity currents originated from the Congo River-mouth, with one flow travelling 〉1,130 km whilst accelerating from 5.2 to 8.0 m/s. In one year, these turbidity currents eroded 1,338-2,675 [〉535-1,070] Mt of sediment from one submarine canyon, equivalent to 19–37 [〉7–15] % of annual suspended sediment flux from present-day rivers. It was known earthquakes trigger canyon-flushing flows. We show river-floods also generate canyon-flushing flows, primed by rapid sediment-accumulation at the river-mouth, and sometimes triggered by spring tides weeks to months post-flood. It is demonstrated that strongly erosional turbidity currents self-accelerate, thereby travelling much further, validating a long-proposed theory. These observations explain highly-efficient organic carbon transfer, and have important implications for hazards to seabed cables, or deep-sea impacts of terrestrial climate change.

Description: Vibrios are rod-shaped bacteria, and are a functionally and phylogenetically diverse grouping of Gram-negative microbes found widely in aquatic, estuarine, and marine habitats. Approximately a dozen Vibrio species are known to cause disease in humans, and infection is usually initiated from exposure to seawater or consumption of raw or undercooked seafood. Although a wide range of different bacterial species contain multiple chromosomes, Vibrio species are noted in that they possess two circular chromosomes. Bacteria of the genus Vibrio are commonly found in tropical and temperate coastal and estuarine waters. Vibrios are among the most common bacteria that inhabit surface waters throughout the world and are responsible for a number of severe infections both in humans and animals. Vibriosis is characterized by diarrhea, primary septicemia, wound infections, or other extraintestinal infections. Select strains of V. cholerae, V. parahaemolyticus, V. vulnificus, and V. alginolyticus are perhaps considered the most serious human pathogens from this genus. Two Vibrio species in particular, V. vulnificus and V. parahaemolyticus are significant foodborne human pathogens, and most frequently infections occur via the consumption of naturally contaminated shellfish produce. It is worth noting that these pathogens represent a significant cause of morbidity and mortality. For example, an estimated 80,000 people contract Vibrio infections each year in the United States, with a sizeable fraction originating from foodborne sources, such as consumption of raw or undercooked seafood produce. Recent data from the Centers for Disease Control and Prevention (CDC) in the United States have indicated that there has been a significant increase in reported infections associated with vibrios, particularly in the last two decades. The annual incidence of reported vibriosis per 100,000 population has increased significantly in the United States from 1996 to 2010, highlighting the importance of these pathogens from a clinical context. Calculations based upon probable incidence of vibriosis have estimated that V. vulnificus and V. parahaemolyticus are the first and third most costly marine-borne pathogens, costing $233 and $20 million, respectively. From a foodborne perspective V. vulnificus and V. parahaemolyticus represent the major pathogens from the Vibrio genus in terms of clinical impact and relevance, and as such this chapter is mostly concerned with these species. These taxa do not sustain prolonged presence in clinical or agricultural settings, where it would likely undergo human-induced selection for antibiotic resistance. As such, these bacteria represent a particularly interesting group of pathogens to study antibiotic resistance, as they provide a “snapshot” of resistance presumably acquired from environmental rather than clinical settings. Despite their public-health significance, strains of V. parahaemolyticus and V. vulnificus have not been extensively monitored for antimicrobial resistance, in contrast to enteric pathogens such as Salmonella or Campylobacter. Given their increasing incidence, global distribution, and severity of disease progression (especially V. vulnificus) it is critical to gain a better understanding of the antimicrobial susceptibility patterns of V. vulnificus and V. parahaemolyticus originating from the environment (Shaw et al., 2014). Data from such sources is invaluable, particularly from routine antimicrobial screening of large numbers of environmental and clinical Vibrio strains as it can provide effective baseline data for treatment purposes.