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  • 1
    Publication Date: 2015-07-17
    Description: Sall2 is required for proapoptotic Noxa expression and genotoxic stress-induced apoptosis by doxorubicin Cell Death and Disease 6, e1816 (July 2015). doi:10.1038/cddis.2015.165 Authors: D Escobar, M I Hepp, C Farkas, T Campos, N M Sodir, M Morales, C I Álvarez, L Swigart, G I Evan, J L Gutiérrez, R Nishinakamura, A F Castro & R Pincheira
    Electronic ISSN: 2041-4889
    Topics: Biology , Medicine
    Published by Springer Nature
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  • 2
    Publication Date: 2016-01-30
    Description: The reported range for global production of nitrogen oxides (NO x =NO+NO 2 ) by lightning remains large ( e . g ., 32 to 664 moles NO x flash -1 ), despite incorporating results from over thirty individual laboratory, theoretical, and field studies since the 1970s. Airborne and ground-based observations from the Deep Convective Clouds & Chemistry (DC3) experiment in May and June 2012 provide a new data set for calculating moles of NO x produced per lightning flash, P(NO x ) , in thunderstorms over the United States Great Plains. This analysis utilizes a combination of in-situ observations of storm inflow and outflow from three instrumented aircraft, three-dimensional spatial information from ground-based radars and satellite observations, and spatial and temporal information for intra-cloud and cloud-to-ground lightning flashes from ground-based lightning mapping arrays. Evaluation of two analysis methods ( e.g ., a volume-based and a flux-based approach) for converting enhancements in lightning-produced NO x from volume-based mixing ratios to moles NO x flash -1 suggests that both methods equally approximate P(NO x ) for storms with elongated anvils while the volume-based approach better approximates P(NO x ) for storms with circular-shaped anvils. Results from the more robust volume-based approach for three storms sampled over Oklahoma and Colorado during DC3 suggest a range of 142 to 291 (average of 194) moles NO x flash -1 (or 117 – 332 moles NO x flash -1 including uncertainties). Although not vastly different from the previously reported range for storms occurring in the Great Plains ( e . g ., 21 – 465 moles NO x flash -1 ), results from this analysis of DC3 storms offer more constrained upper and lower limits for P(NO x ) in this geographical region.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 3
    Publication Date: 2011-03-15
    Description: Model simulations with the Chemical Lagrangian Model of the Stratosphere (CLaMS) driven by wind fields of the National Center for Environmental Prediction (NCEP) were performed in the midlatitude tropopause region in April 2008 to study two research flights conducted during the START08 campaign. One flight targeted a deep tropospheric intrusion and another flight targeted a deep stratospheric intrusion event, both of them in the vicinity of the subtropical and polar jet. Air masses with strong signatures of mixing between stratospheric and tropospheric air masses were identified from measured CO-O3 correlations, and the characteristics were reproduced by CLaMS model simulations. CLaMS simulations in turn complement the observations and provide a broader view of the mixed region in physical space. Using artificial tracers of air mass origin within CLaMS yields unique information about the transport pathways and their contribution to the composition in the mixed region from different transport origins. Three different regions are examined to categorize dominant transport processes: (1) on the cyclonic side of the polar jet within tropopause folds where air from the lowermost stratosphere and the cyclonic side of the jet is transported downward into the troposphere, (2) on the anticyclonic side of the polar jet around the 2 PVU surface air masses, where signatures of mixing between the troposphere and lowermost stratosphere were found with large contributions of air masses from low latitudes, and (3) in the lower stratosphere associated with a deep tropospheric intrusion originating in the tropical tropopause layer (TTL). Moreover, the time scale of transport from the TTL into the lowermost stratosphere is in the range of weeks whereas the stratospheric intrusions occur on a time scale of days.
    Print ISSN: 0148-0227
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 4
    Publication Date: 2014-11-18
    Description: Recent advances in growth techniques have allowed the fabrication of semiconductor nanostructures with mixed wurtzite/zinc-blende crystal phases. Although the optical characterization of these polytypic structures is well reported in the literature, a deeper theoretical understanding of how crystal phase mixing and quantum confinement change the output linear light polarization is still needed. In this paper, we theoretically investigate the mixing effects of wurtzite and zinc-blende phases on the interband absorption and in the degree of light polarization of an InP polytypic superlattice. We use a single 8 × 8 k⋅p Hamiltonian that describes both crystal phases. Quantum confinement is investigated by changing the size of the polytypic unit cell. We also include the optical confinement effect due to the dielectric mismatch between the superlattice and the vaccum and we show it to be necessary to match experimental results. Our calculations for large wurtzite concentrations and small quantum confinement explain the optical trends of recent photoluminescence excitation measurements. Furthermore, we find a high sensitivity to zinc-blende concentrations in the degree of linear polarization. This sensitivity can be reduced by increasing quantum confinement. In conclusion, our theoretical analysis provides an explanation for optical trends in InP polytypic superlattices, and shows that the interplay of crystal phase mixing and quantum confinement is an area worth exploring for light polarization engineering.
    Print ISSN: 0021-8979
    Electronic ISSN: 1089-7550
    Topics: Physics
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  • 5
    Publication Date: 2019
    Description: Abstract As part of the WINTER (Wintertime Investigation of Transport, Emissions, and Reactivity) campaign, a Particle‐into‐Liquid Sampler with a fraction collector was flown aboard the National Center for Atmospheric Research C‐130 aircraft. Two‐minute integrated liquid samples containing dissolved fine particulate matter (PM1) species were collected and analyzed off‐line for the smoke marker levoglucosan using high‐performance anion‐exchange chromatography‐pulsed amperometric detection to compare levoglucosan with aerosol mass spectrometer (AMS) biomass burning markers and investigate the contribution from residential burning during the study. Levoglucosan was correlated with AMS organic aerosol (R2 = 0.49) and with carbon monoxide (CO; R2 = 0.51) for all flights. Levoglucosan was not correlated with the inorganic smoke marker water‐soluble potassium but was correlated with the AMS markers ∆C2H4O2+ (high resolution, R2 = 0.60) and ∆m/z 60 (unit mass resolution, R2 = 0.61). However, at low levoglucosan, AMS markers deviated potentially due to interferences from other sources or differences with the species captured by the AMS markers. Analysis of levoglucosan changes relative to carbon monoxide as plumes advected from source regions showed no systematic levoglucosan loss for plumes up to 20 hr old. Based on literature residential burning source ratios and measured levoglucosan, contributions of organic carbon (OC) due to residential burning were estimated. The contribution ranged from ~30 to 100% of the OC, with significant variability depending on the source ratio used; however, the results show that biomass burning was a significant PM1 OC source across the entire sampling region. A GEOS‐Chem model simulation predicted significantly less smoke contribution.
    Print ISSN: 2169-897X
    Electronic ISSN: 2169-8996
    Topics: Geosciences , Physics
    Published by Wiley on behalf of American Geophysical Union (AGU).
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  • 6
    Publication Date: 2001-02-13
    Description: The Indian Ocean Experiment (INDOEX) was an international, multiplatform field campaign to measure long-range transport of air pollution from South and Southeast Asia toward the Indian Ocean during the dry monsoon season in January to March 1999. Surprisingly high pollution levels were observed over the entire northern Indian Ocean toward the Intertropical Convergence Zone at about 6 degrees S. We show that agricultural burning and especially biofuel use enhance carbon monoxide concentrations. Fossil fuel combustion and biomass burning cause a high aerosol loading. The growing pollution in this region gives rise to extensive air quality degradation with local, regional, and global implications, including a reduction of the oxidizing power of the atmosphere.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Lelieveld, J -- Crutzen, P J -- Ramanathan, V -- Andreae, M O -- Brenninkmeijer, C M -- Campos, T -- Cass, G R -- Dickerson, R R -- Fischer, H -- de Gouw, J A -- Hansel, A -- Jefferson, A -- Kley, D -- de Laat, A T -- Lal, S -- Lawrence, M G -- Lobert, J M -- Mayol-Bracero, O L -- Mitra, A P -- Novakov, T -- Oltmans, S J -- Prather, K A -- Reiner, T -- Rodhe, H -- Scheeren, H A -- Sikka, D -- Williams, J -- New York, N.Y. -- Science. 2001 Feb 9;291(5506):1031-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Max-Planck-Institute for Chemistry, Post Office Box 3060, D-55020 Mainz, Germany. lelieveld@mpch-mainz.mpg.de〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/11161214" target="_blank"〉PubMed〈/a〉
    Keywords: Aerosols ; Agriculture ; *Air Pollution ; Asia ; Asia, Southeastern ; Atmosphere ; Biomass ; Carbon ; Carbon Monoxide ; Coal Ash ; Fossil Fuels ; Industrial Waste ; Nitrogen Oxides ; Oceans and Seas ; Ozone ; Particulate Matter ; Seasons
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2010-01-22
    Description: In the lowermost layer of the atmosphere-the troposphere-ozone is an important source of the hydroxyl radical, an oxidant that breaks down most pollutants and some greenhouse gases. High concentrations of tropospheric ozone are toxic, however, and have a detrimental effect on human health and ecosystem productivity. Moreover, tropospheric ozone itself acts as an effective greenhouse gas. Much of the present tropospheric ozone burden is a consequence of anthropogenic emissions of ozone precursors resulting in widespread increases in ozone concentrations since the late 1800s. At present, east Asia has the fastest-growing ozone precursor emissions. Much of the springtime east Asian pollution is exported eastwards towards western North America. Despite evidence that the exported Asian pollution produces ozone, no previous study has found a significant increase in free tropospheric ozone concentrations above the western USA since measurements began in the late 1970s. Here we compile springtime ozone measurements from many different platforms across western North America. We show a strong increase in springtime ozone mixing ratios during 1995-2008 and we have some additional evidence that a similar rate of increase in ozone mixing ratio has occurred since 1984. We find that the rate of increase in ozone mixing ratio is greatest when measurements are more heavily influenced by direct transport from Asia. Our result agrees with previous modelling studies, which indicate that global ozone concentrations should be increasing during the early part of the twenty-first century as a result of increasing precursor emissions, especially at northern mid-latitudes, with western North America being particularly sensitive to rising Asian emissions. We suggest that the observed increase in springtime background ozone mixing ratio may hinder the USA's compliance with its ozone air quality standard.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cooper, O R -- Parrish, D D -- Stohl, A -- Trainer, M -- Nedelec, P -- Thouret, V -- Cammas, J P -- Oltmans, S J -- Johnson, B J -- Tarasick, D -- Leblanc, T -- McDermid, I S -- Jaffe, D -- Gao, R -- Stith, J -- Ryerson, T -- Aikin, K -- Campos, T -- Weinheimer, A -- Avery, M A -- England -- Nature. 2010 Jan 21;463(7279):344-8. doi: 10.1038/nature08708.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Cooperative Institute for Research in Environmental Sciences, University of Colorado, Boulder, Colorado 80309, USA. owen.r.cooper@noaa.gov〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/20090751" target="_blank"〉PubMed〈/a〉
    Keywords: Air Pollutants/analysis/chemistry ; Asia ; Atmosphere/*chemistry ; Ecosystem ; Greenhouse Effect ; History, 20th Century ; History, 21st Century ; North America ; Ozone/*analysis/chemical synthesis/chemistry ; Sample Size ; Seasons
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2013-07-17
    Description: : The continuous growth of the biomedical scientific literature has been motivating the development of text-mining tools able to efficiently process all this information. Although numerous domain-specific solutions are available, there is no web-based concept-recognition system that combines the ability to select multiple concept types to annotate, to reference external databases and to automatically annotate nested and intercepted concepts. BeCAS, the Biomedical Concept Annotation System, is an API for biomedical concept identification and a web-based tool that addresses these limitations. MEDLINE abstracts or free text can be annotated directly in the web interface, where identified concepts are enriched with links to reference databases. Using its customizable widget, it can also be used to augment external web pages with concept highlighting features. Furthermore, all text-processing and annotation features are made available through an HTTP REST API, allowing integration in any text-processing pipeline. Availability: BeCAS is freely available for non-commercial use at http://bioinformatics.ua.pt/becas . Contacts: tiago.nunes@ua.pt or jlo@ua.pt
    Print ISSN: 1367-4803
    Electronic ISSN: 1460-2059
    Topics: Biology , Computer Science , Medicine
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  • 9
    Publication Date: 2016-04-12
    Description: Nitrogen oxides are essential for the formation of secondary atmospheric aerosols and of atmospheric oxidants such as ozone and the hydroxyl radical, which controls the self-cleansing capacity of the atmosphere. Nitric acid, a major oxidation product of nitrogen oxides, has traditionally been considered to be a permanent sink of nitrogen oxides. However, model studies predict higher ratios of nitric acid to nitrogen oxides in the troposphere than are observed. A 'renoxification' process that recycles nitric acid into nitrogen oxides has been proposed to reconcile observations with model studies, but the mechanisms responsible for this process remain uncertain. Here we present data from an aircraft measurement campaign over the North Atlantic Ocean and find evidence for rapid recycling of nitric acid to nitrous acid and nitrogen oxides in the clean marine boundary layer via particulate nitrate photolysis. Laboratory experiments further demonstrate the photolysis of particulate nitrate collected on filters at a rate more than two orders of magnitude greater than that of gaseous nitric acid, with nitrous acid as the main product. Box model calculations based on the Master Chemical Mechanism suggest that particulate nitrate photolysis mainly sustains the observed levels of nitrous acid and nitrogen oxides at midday under typical marine boundary layer conditions. Given that oceans account for more than 70 per cent of Earth's surface, we propose that particulate nitrate photolysis could be a substantial tropospheric nitrogen oxide source. Recycling of nitrogen oxides in remote oceanic regions with minimal direct nitrogen oxide emissions could increase the formation of tropospheric oxidants and secondary atmospheric aerosols on a global scale.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Ye, Chunxiang -- Zhou, Xianliang -- Pu, Dennis -- Stutz, Jochen -- Festa, James -- Spolaor, Max -- Tsai, Catalina -- Cantrell, Christopher -- Mauldin, Roy L 3rd -- Campos, Teresa -- Weinheimer, Andrew -- Hornbrook, Rebecca S -- Apel, Eric C -- Guenther, Alex -- Kaser, Lisa -- Yuan, Bin -- Karl, Thomas -- Haggerty, Julie -- Hall, Samuel -- Ullmann, Kirk -- Smith, James N -- Ortega, John -- Knote, Christoph -- England -- Nature. 2016 Apr 28;532(7600):489-91. doi: 10.1038/nature17195. Epub 2016 Apr 11.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Wadsworth Center, New York State Department of Health, Albany, New York, USA. ; Department of Environmental Health Sciences, State University of New York, Albany, New York, USA. ; Department of Atmospheric and Oceanic Sciences, University of California, Los Angeles (UCLA), California, USA. ; Department of Atmospheric and Oceanic Sciences, University of Colorado at Boulder, Boulder, Colorado, USA. ; Department of Physics, University of Helsinki, Helsinki, Finland. ; National Center for Atmospheric Research, Boulder, Colorado, USA. ; Pacific Northwest National Laboratory, Richland, Washington, USA. ; NOAA, Earth System Research Laboratory, Chemical Sciences Division, Boulder, Colorado, USA. ; Cooperative Institute for Research in Environmental Sciences, University of Colorado at Boulder, Boulder, Colorado, USA. ; Institute for Meteorology and Geophysics, University of Innsbruck, Innsbruck, Austria. ; University of Eastern Finland, Kuopio, Finland.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/27064904" target="_blank"〉PubMed〈/a〉
    Keywords: Aerosols/chemistry ; Atlantic Ocean ; Atmosphere/*chemistry ; Nitrates/analysis/chemistry ; Nitric Acid/chemistry ; Nitrogen/*analysis/*chemistry ; Nitrogen Oxides/*analysis/*chemistry ; Nitrous Acid/analysis/chemistry ; North Carolina ; Oxidants/chemistry ; Photolysis ; Seawater/*chemistry ; South Carolina
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 10
    Publication Date: 2017-02-11
    Description: The syntheses of several polyazaheterocycles are demonstrated. The cyclocondensation reactions between β-enaminodiketones [CCl 3 C(O)C(=CNMe 2 )C(O)-CO 2 Et] and aromatic amidines resulted in glyoxalate-substituted pyrido[1,2- a ]pyrimidinone, thiazolo[3,2- a ]pyrimidinone and pyrimido[1,2- a ]benzimidazole. Pyrazinones and quinoxalinones were obtained through the reaction of these glyoxalates with ethylenediamine and 1,2-phenylenediamine derivatives. On the other hand, the reaction of glyoxalates with amidines did not lead to the formation of imidazolones, but rather N -acylated products were obtained. All the products were isolated in good yields. DFT-B3LYP calculations provided HOMO/LUMO coefficients, charge densities, and the stability energies of the intermediates, and from these data it was possible to explain the regiochemistry of the products obtained. Additionally, the data were a useful tool for elucidating the reaction mechanisms. Beilstein J. Org. Chem. 2017, 13, 257–266. doi:10.3762/bjoc.13.29
    Keywords: DFT-B3LYPpolyazaheterocyclespyrazinonepyrido[1,2-a]pyrimidinonepyrimido[1,2-a]benzimidazolequinoxalinonethiazolo[3,2-a]pyrimidinone
    Electronic ISSN: 1860-5397
    Topics: Chemistry and Pharmacology
    Published by Beilstein-Institut
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