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  • Nature Publishing Group  (51,503)
  • 2000-2004  (15,140)
  • 1990-1994  (18,756)
  • 1980-1984  (17,607)
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  • 1
    Publication Date: 2017-01-04
    Description: Tropical South America is one of the three main centres of the global, zonal overturning circulation of the equatorial atmosphere (generally termed the 'Walker' circulation1). Although this area plays a key role in global climate cycles, little is known about South American climate history. Here we describe sediment cores and down-hole logging results of deep drilling in the Salar de Uyuni, on the Bolivian Altiplano, located in the tropical Andes. We demonstrate that during the past 50,000 years the Altiplano underwent important changes in effective moisture at both orbital (20,000-year) and millennial timescales. Long-duration wet periods, such as the Last Glacial Maximum—marked in the drill core by continuous deposition of lacustrine sediments—appear to have occurred in phase with summer insolation maxima produced by the Earth's precessional cycle. Short-duration, millennial events correlate well with North Atlantic cold events, including Heinrich events 1 and 2, as well as the Younger Dryas episode. At both millennial and orbital timescales, cold sea surface temperatures in the high-latitude North Atlantic were coeval with wet conditions in tropical South America, suggesting a common forcing.
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  • 2
    Publication Date: 2017-07-07
    Description: According to small subunit ribosomal RNA (ss rRNA) sequence comparisons all known Archaea belong to the phyla Crenarchaeota, Euryarchaeota, and—indicated only by environmental DNA sequences—to the 'Korarchaeota'1, 2. Here we report the cultivation of a new nanosized hyperthermophilic archaeon from a submarine hot vent. This archaeon cannot be attached to one of these groups and therefore must represent an unknown phylum which we name 'Nanoarchaeota' and species, which we name 'Nanoarchaeum equitans'. Cells of 'N. equitans' are spherical, and only about 400 nm in diameter. They grow attached to the surface of a specific archaeal host, a new member of the genus Ignicoccus3. The distribution of the 'Nanoarchaeota' is so far unknown. Owing to their unusual ss rRNA sequence, members remained undetectable by commonly used ecological studies based on the polymerase chain reaction4. 'N. equitans' harbours the smallest archaeal genome; it is only 0.5 megabases in size. This organism will provide insight into the evolution of thermophily, of tiny genomes and of interspecies communication.
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  • 3
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    Nature Publishing Group
    In:  Nature, 346 (6282). pp. 323-324.
    Publication Date: 2017-08-10
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  • 4
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    Nature Publishing Group
    In:  Nature, 356 (6366). p. 199.
    Publication Date: 2017-03-14
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  • 5
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    Nature Publishing Group
    In:  Nature, 362 (6421). pp. 626-628.
    Publication Date: 2019-02-07
    Description: WHILE ammonites and all other ectocochleate cephalopods became extinct, nautiloids survived relatively unchanged from the Ordovician, suggesting that they are unusually well adapted to their niche. Here we obtain high-resolution tracks of Nautilus positions and depths, combined with telemetered jet pressures, which clarify both its lifestyle and economics. Nautilus is more active in nature than in captivity1, but its energy costs are lower than projected2,3. Viewing Nautilus as 'vertic', rather than benthic, resolves this contradiction. Records show that the cost of transport is the same in any direction within a vertical plane. Living on a reef face swept by a lateral current means that vertical movements4,5 sample large areas for chemical trails. A detected trail can be followed upcurrent in the slow-moving boundary layer, but no effort is wasted on horizontal movement without good prospects for food; long-range movements are downcurrent and made by drifting. Once fed, a Nautilus can reduce its energy costs by moving to deeper, cooler waters, where a single meal can last for months.
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  • 6
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    Nature Publishing Group
    In:  Nature, 371 (6498). p. 563.
    Publication Date: 2017-05-10
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  • 7
    Publication Date: 2017-01-04
    Description: The onset of the Palaeocene/Eocene thermal maximum (about 55 Myr ago) was marked by global surface temperatures warming by 5–7 °C over approximately 30,000 yr (ref. 1), probably because of enhanced mantle outgassing2, 3 and the pulsed release of approx1,500 gigatonnes of methane carbon from decomposing gas-hydrate reservoirs4, 5, 6, 7. The aftermath of this rapid, intense and global warming event may be the best example in the geological record of the response of the Earth to high atmospheric carbon dioxide concentrations and high temperatures. This response has been suggested to include an intensified flux of organic carbon from the ocean surface to the deep ocean and its subsequent burial through biogeochemical feedback mechanisms8. Here we present firm evidence for this view from two ocean drilling cores, which record the largest accumulation rates of biogenic barium—indicative of export palaeoproductivity—at times of maximum global temperatures and peak excursion values of delta13C. The unusually rapid return of delta13C to values similar to those before the methane release7 and the apparent coupling of the accumulation rates of biogenic barium to temperature, suggests that the enhanced deposition of organic matter to the deep sea may have efficiently cooled this greenhouse climate by the rapid removal of excess carbon dioxide from the atmosphere.
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  • 8
    Publication Date: 2017-07-06
    Description: Living coelacanths (Latimeria chalumnae) are normally found only in the western Indian Ocean, where they inhabit submarine caves in the Comores Islands. Two specimens have since been caught off the island of Manado Tua, north Sulawesi, Indonesia, some 10,000 kilometres away. We sought to determine the ecological and geographic distribution of Indonesian coelacanth populations with a view to drawing up conservation measures for this extremely rare fish. During our explorations, we discovered two living Indonesian coelacanths 360 km southwest of Manado Tua.
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  • 9
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    Nature Publishing Group
    In:  Nature, 351 (6325). pp. 394-397.
    Publication Date: 2017-08-10
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  • 10
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    Nature Publishing Group
    In:  Nature, 363 (6428). p. 405.
    Publication Date: 2017-08-03
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  • 11
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    Nature Publishing Group
    In:  Nature, 357 (6374). p. 105.
    Publication Date: 2017-08-03
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  • 12
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    Nature Publishing Group
    In:  Nature, 421 (6922). pp. 520-523.
    Publication Date: 2016-05-10
    Description: Breaking waves markedly increase the rates of air–sea transfer of momentum, energy and mass. In light to moderate wind conditions, spilling breakers with short wavelengths are observed frequently. Theory and laboratory experiments have shown that, as these waves approach breaking in clean water, a ripple pattern that is dominated by surface tension forms at the crest. Under laboratory conditions and in theory, the transition to turbulent flow is triggered by flow separation under the ripples, typically without leading to overturning of the free surface15. Water surfaces in nature, however, are typically contaminated by surfactant films that alter the surface tension and produce surface elasticity and viscosity16, 17. Here we present the results of laboratory experiments in which spilling breaking waves were generated mechanically in water with a range of surfactant concentrations. We find significant changes in the breaking process owing to surfactants. At the highest concentration of surfactants, a small plunging jet issues from the front face of the wave at a point below the wave crest and entraps a pocket of air on impact with the front face of the wave. The bubbles and turbulence created during this process are likely to increase air–sea transfer.
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  • 13
    Publication Date: 2016-04-11
    Description: There has been concern about recent temperature trends and the future effects of CO2 concentrations in the atmosphere1,2; but instrumental records only cover a few decades to a few centuries and it is essential that proxy data sources, such as pollen spectra from peats and lake sediments, be carefully interpreted as climate records. Several workers have shown statistically significant associations between the modern pollen rain and climatic parameters, an approach that by-passes the recognition of pollen/vegetation units. Statistically defined equations that associate abiotic and biotic elements are called transfer functions. We report here on the application of transfer function equations to nine middle and late Holocene peat and lake sediment sequences from northern Canada (Fig. 1).
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  • 14
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    Nature Publishing Group
    In:  Nature, 288 (5788). pp. 260-263.
    Publication Date: 2016-03-01
    Description: Organic detritus passing from the sea surface through the water column to the sea floor controls nutrient regeneration, fuels benthic life and affects burial of organic carbon in the sediment record. Particle trap systems have enabled the first quantification of this important process. The results suggest that the dominant mechanism of vertical transport is by rapid settling of rare large particles, most likely of faecal pellets or marine snow of the order of 〉200 μm in diameter, whereas the more frequent small particles have an insignificant role in vertical mass flux4–6. The ultimate source of organic detritus is biological production in surface waters of the oceans. I determine here an empirical relationship that predicts organic carbon flux at any depth in the oceans below the base of the euphotic zone as a function of the mean net primary production rate at the surface and depth-dependent consumption. Such a relationship aids in estimating rates of decay of organic matter in the water column, benthic and water column respiration of oxygen in the deep sea and burial of organic carbon in the sediment record.
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  • 15
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    Nature Publishing Group
    In:  Nature, 366 (6453). pp. 338-340.
    Publication Date: 2015-08-31
    Description: THE vestimentiferan tubeworm Riftia pachyptila is found around hydrothermal vent areas in the deep sea. Intracellular bacterial chemoautotrophic symbionts use the oxidation of sulphide from the effluent of the vents as an energy source for CO2 fixation. They apparently provide most or all of the nutritional requirements for their gutless hosts1–5. This kind of symbiosis has since been found in many other species from various other phyla from other habitats6–9. Here we present results that the bacteria of R. pachyptila may cover a significant fraction of their respiratory needs by the use of nitrate in addition to oxygen. Nitrate is reduced to nitrite, which may be the end product (nitrate respiration)10 or it may be further reduced to nitrogen gas (denitrification)11. This metabolic trait may have an important role in the colonization of hypoxic habitats in general by animals with this kind of symbiosis.
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  • 16
    Publication Date: 2015-11-24
    Description: Noble-gas geochemistry is an important tool for understanding planetary processes from accretion to mantle dynamics and atmospheric formation. Central to much of the modelling of such processes is the crystal–melt partitioning of noble gases during mantle melting, magma ascent and near-surface degassing5. Geochemists have traditionally considered the 'inert' noble gases to be extremely incompatible elements, with almost 100 per cent extraction efficiency from the solid phase during melting processes. Previously published experimental data on partitioning between crystalline silicates and melts has, however, suggested that noble gases approach compatible behaviour, and a significant proportion should therefore remain in the mantle during melt extraction. Here we present experimental data to show that noble gases are more incompatible than previously demonstrated, but not necessarily to the extent assumed or required by geochemical models. Independent atomistic computer simulations indicate that noble gases can be considered as species of 'zero charge' incorporated at crystal lattice sites. Together with the lattice strain model9, 10, this provides a theoretical framework with which to model noble-gas geochemistry as a function of residual mantle mineralogy.
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  • 17
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    Nature Publishing Group
    In:  Nature Reviews Microbiology, 2 (5). pp. 414-424.
    Publication Date: 2020-06-23
    Description: Horizontal gene transfer is an important mechanism for the evolution of microbial genomes. Pathogenicity islands — mobile genetic elements that contribute to rapid changes in virulence potential — are known to have contributed to genome evolution by horizontal gene transfer in many bacterial pathogens. Increasing evidence indicates that equivalent elements in non-pathogenic species — genomic islands — are important in the evolution of these bacteria, influencing traits such as antibiotic resistance, symbiosis and fitness, and adaptation in general. This review discusses the recent lessons that have been learned from pathogenicity islands in pathogenic microorganisms and how they apply to the role of genomic islands in commensal, symbiotic and environmental bacteria.
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  • 18
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    Nature Publishing Group
    In:  Nature Geoscience, 417 . pp. 848-851.
    Publication Date: 2017-02-28
    Description: A key question in ecology is which factors control species diversity in a community1, 2, 3. Two largely separate groups of ecologists have emphasized the importance of productivity or resource supply, and consumers or physical disturbance, respectively. These variables show unimodal relationships with diversity when manipulated in isolation4, 5, 6, 7, 8. Recent multivariate models9, 10, however, predict that these factors interact, such that the disturbance–diversity relationship depends on productivity, and vice versa. We tested these models in marine food webs, using field manipulations of nutrient resources and consumer pressure on rocky shores of contrasting productivity. Here we show that the effects of consumers and nutrients on diversity consistently depend on each other, and that the direction of their effects and peak diversity shift between sites of low and high productivity. Factorial meta-analysis of published experiments confirms these results across widely varying aquatic communities. Furthermore, our experiments demonstrate that these patterns extend to important ecosystem functions such as carbon storage and nitrogen retention. This suggests that human impacts on nutrient supply11 and food-web structure12, 13 have strong and interdependent effects on species diversity and ecosystem functioning, and must therefore be managed together.
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  • 19
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    Nature Publishing Group
    In:  Nature, 417 . pp. 487-488.
    Publication Date: 2017-03-07
    Description: BOOK REVIEWED: Plate Tectonics: An Insider's History of the Modern Theory of the Earth / edited by Naomi Oreskes Westview Press: 2001. 448 pp.
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  • 20
    Publication Date: 2017-03-09
    Description: The existence in the ocean of deep western boundary currents, which connect the high-latitude regions where deep water is formed with upwelling regions as part of the global ocean circulation, was postulated more than 40 years ago1. These ocean currents have been found adjacent to the continental slopes of all ocean basins, and have core depths between 1,500 and 4,000 m. In the Atlantic Ocean, the deep western boundary current is estimated to carry (10–40) times 106 m3 s-1 of water2, 3, 4, 5, transporting North Atlantic Deep Water—from the overflow regions between Greenland and Scotland and from the Labrador Sea—into the South Atlantic and the Antarctic circumpolar current. Here we present direct velocity and water mass observations obtained in the period 2000 to 2003, as well as results from a numerical ocean circulation model, showing that the Atlantic deep western boundary current breaks up at 8° S. Southward of this latitude, the transport of North Atlantic Deep Water into the South Atlantic Ocean is accomplished by migrating eddies, rather than by a continuous flow. Our model simulation indicates that the deep western boundary current breaks up into eddies at the present intensity of meridional overturning circulation. For weaker overturning, continuation as a stable, laminar boundary flow seems possible.
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  • 21
    Publication Date: 2017-03-07
    Description: More than 50% of the Earth' s surface is sea floor below 3,000 m of water. Most of this major reservoir in the global carbon cycle and final repository for anthropogenic wastes is characterized by severe food limitation. Phytodetritus is the major food source for abyssal benthic communities, and a large fraction of the annual food load can arrive in pulses within a few days1, 2. Owing to logistical constraints, the available data concerning the fate of such a pulse are scattered3, 4 and often contradictory5, 6, 7, 8, 9, 10, hampering global carbon modelling and anthropogenic impact assessments. We quantified (over a period of 2.5 to 23 days) the response of an abyssal benthic community to a phytodetritus pulse, on the basis of 11 in situ experiments. Here we report that, in contrast to previous hypotheses5, 6, 7, 8, 9, 10, 11, the sediment community oxygen consumption doubled immediately, and that macrofauna were very important for initial carbon degradation. The retarded response of bacteria and Foraminifera, the restriction of microbial carbon degradation to the sediment surface, and the low total carbon turnover distinguish abyssal from continental-slope ‘deep-sea’ sediments.
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  • 22
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    Nature Publishing Group
    In:  Nature, 371 (6495). pp. 289-290.
    Publication Date: 2018-03-02
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  • 23
    Publication Date: 2017-03-07
    Description: The shells of the planktonic foraminifer Neogloboquadrina pachyderma have become a classical tool for reconstructing glacial–interglacial climate conditions in the North Atlantic Ocean1, 2, 3. Palaeoceanographers utilize its left- and right-coiling variants, which exhibit a distinctive reciprocal temperature and water mass related shift in faunal abundance both at present and in late Quaternary sediments1, 2, 4, 5. Recently discovered cryptic genetic diversity in planktonic foraminifers6, 7, 8 now poses significant questions for these studies. Here we report genetic evidence demonstrating that the apparent ‘single species’ shell-based records of right-coiling N. pachyderma used in palaeoceanographic reconstructions contain an alternation in species as environmental factors change. This is reflected in a species-dependent incremental shift in right-coiling N. pachyderma shell calcite δ18O between the Last Glacial Maximum and full Holocene conditions. Guided by the percentage dextral coiling ratio, our findings enhance the use of δ18O records of right-coiling N. pachyderma for future study. They also highlight the need to genetically investigate other important morphospecies to refine their accuracy and reliability as palaeoceanographic proxies.
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  • 24
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    Nature Publishing Group
    In:  Nature, 412 . pp. 605-606.
    Publication Date: 2017-02-28
    Description: One way of accounting for lowered atmospheric carbon dioxide concentrations during Pleistocene glacial periods is by invoking the Antarctic stratification hypothesis, which links the reduction in CO2 to greater stratification of ocean surface waters around Antarctica1, 2. As discussed by Sigman and Boyle3, this hypothesis assumes that increased stratification in the Antarctic zone (Fig. 1) was associated with reduced upwelling of deep waters around Antarctica, thereby allowing CO2 outgassing to be suppressed by biological production while also allowing biological production to decline, which is consistent with Antarctic sediment records4. We point out here, however, that the response of ocean eddies to increased Antarctic stratification can be expected to increase, rather than reduce, the upwelling rate of deep waters around Antarctica. The stratification hypothesis may have difficulty in accommodating eddy feedbacks on upwelling within the constraints imposed by reconstructions of winds and Antarctic-zone productivity in glacial periods.
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  • 25
    Publication Date: 2017-03-07
    Description: The climate of the last glacial period was extremely variable, characterized by abrupt warming events in the Northern Hemisphere, accompanied by slower temperature changes in Antarctica and variations of global sea level. It is generally accepted that this millennial-scale climate variability was caused by abrupt changes in the ocean thermohaline circulation. Here we use a coupled ocean–atmosphere–sea ice model to show that freshwater discharge into the North Atlantic Ocean, in addition to a reduction of the thermohaline circulation, has a direct effect on Southern Ocean temperature. The related anomalous oceanic southward heat transport arises from a zonal density gradient in the subtropical North Atlantic caused by a fast wave-adjustment process. We present an extended and quantitative bipolar seesaw concept that explains the timing and amplitude of Greenland and Antarctic temperature changes, the slow changes in Antarctic temperature and its similarity to sea level, as well as a possible time lag of sea level with respect to Antarctic temperature during Marine Isotope Stage 3.
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  • 26
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    Nature Publishing Group
    In:  Nature, 361 . pp. 249-251.
    Publication Date: 2017-02-24
    Description: THE supply of dissolved inorganic carbon (DIC) is not considered to limit oceanic primary productivity1, as its concentration in sea water exceeds that of other plant macronutrients such as nitrate and phosphate by two and three orders of magnitude, respectively. But the bulk of oceanic new production2 and a major fraction of vertical carbon flux is mediated by a few diatom genera whose ability to use DIG components other than CO2, which comprises 〈 1% of total DIC3, is unknown4. Here we show that under optimal light and nutrient conditions, diatom growth rate can in fact be limited by the supply of CO2. The doubling in surface water pCO2 levels since the last glaciation from 180 to 355 p.p.m.5,6 could therefore have stimulated marine productivity, thereby increasing oceanic carbon sequestration by the biological pump.
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  • 27
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    Nature Publishing Group
    In:  Nature, 406 . pp. 955-956.
    Publication Date: 2021-07-01
    Description: Birds taking time off from breeding head for their favourite long-haul destinations. What oceanic seabirds do outside their breeding periods is something of a mystery, although altogether these "sabbaticals' add up to more than half of their lifetime and are probably a key feature of their life history. Here we use geolocation systems based on light-intensity measurements to show that during these periods wandering albatrosses (Diomedea exulans) leave the foraging grounds that they frequent while breeding for specific, individual oceanic sectors and spend the rest of the year there — each bird probably returns to the same area throughout its life. This discovery of individual home-range preferences outside the breeding season has important implications for the conservation of albatrosses threatened by the development of longline fisheries.
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  • 28
    Publication Date: 2017-03-10
    Description: The role of iron in enhancing phytoplankton productivity in high nutrient, low chlorophyll oceanic regions was demonstrated first through iron-addition bioassay experiments1 and subsequently confirmed by large-scale iron fertilization experiments2. Iron supply has been hypothesized to limit nitrogen fixation and hence oceanic primary productivity on geological timescales3, providing an alternative to phosphorus as the ultimate limiting nutrient4. Oceanographic observations have been interpreted both to confirm and refute this hypothesis5, 6, but direct experimental evidence is lacking7. We conducted experiments to test this hypothesis during the Meteor 55 cruise to the tropical North Atlantic. This region is rich in diazotrophs8 and strongly impacted by Saharan dust input9. Here we show that community primary productivity was nitrogen-limited, and that nitrogen fixation was co-limited by iron and phosphorus. Saharan dust addition stimulated nitrogen fixation, presumably by supplying both iron and phosphorus10, 11. Our results support the hypothesis that aeolian mineral dust deposition promotes nitrogen fixation in the eastern tropical North Atlantic.
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  • 29
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    Nature Publishing Group
    In:  Nature, 422 . pp. 602-606.
    Publication Date: 2019-09-23
    Description: The Messinian salinity crisis—the desiccation of the Mediterranean Sea between 5.96 and 5.33 million years (Myr) ago1—was one of the most dramatic events on Earth during the Cenozoic era2. It resulted from the closure of marine gateways between the Atlantic Ocean and the Mediterranean Sea, the causes of which remain enigmatic. Here we use the age and composition of volcanic rocks to reconstruct the geodynamic evolution of the westernmost Mediterranean from the Middle Miocene epoch to the Pleistocene epoch (about 12.1–0.65 Myr ago). Our data show that a marked shift in the geochemistry of mantle-derived volcanic rocks, reflecting a change from subduction-related to intraplate-type volcanism, occurred between 6.3 and 4.8 Myr ago, largely synchronous with the Messinian salinity crisis. Using a thermomechanical model, we show that westward roll back of subducted Tethys oceanic lithosphere and associated asthenospheric upwelling provides a plausible mechanism for producing the shift in magma chemistry and the necessary uplift (approx1 km) along the African and Iberian continental margins to close the Miocene marine gateways, thereby causing the Messinian salinity crisis.
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  • 30
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    Nature Publishing Group
    In:  Nature, 429 .
    Publication Date: 2017-03-10
    Description: No need to wait for more information: industrialized fishing is already wiping out stocks.
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  • 31
    Publication Date: 2019-09-23
    Description: The formation and sinking of biogenic particles mediate vertical mass fluxes and drive elemental cycling in the ocean1. Whereas marine sciences have focused primarily on particle production by phytoplankton growth, particle formation by the assembly of organic macromolecules has almost been neglected2, 3. Here we show, by means of a combined experimental and modelling study, that the formation of polysaccharide particles is an important pathway to convert dissolved into particulate organic carbon during phytoplankton blooms, and can be described in terms of aggregation kinetics. Our findings suggest that aggregation processes in the ocean cascade from the molecular scale up to the size of fast-settling particles, and give new insights into the cycling and export of biogeochemical key elements such as carbon, iron and thorium.
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  • 32
    Publication Date: 2019-09-23
    Description: The deposition of atmospheric dust into the ocean has varied considerably over geological time1, 2. Because some of the trace metals contained in dust are essential plant nutrients which can limit phytoplankton growth in parts of the ocean, it has been suggested that variations in dust supply to the surface ocean might influence primary production3, 4. Whereas the role of trace metal availability in photosynthetic carbon fixation has received considerable attention, its effect on biogenic calcification is virtually unknown. The production of both particulate organic carbon and calcium carbonate (CaCO3) drives the ocean's biological carbon pump. The ratio of particulate organic carbon to CaCO3 export, the so-called rain ratio, is one of the factors determining CO2 sequestration in the deep ocean. Here we investigate the influence of the essential trace metals iron and zinc on the prominent CaCO3-producing microalga Emiliania huxleyi. We show that whereas at low iron concentrations growth and calcification are equally reduced, low zinc concentrations result in a de-coupling of the two processes. Despite the reduced growth rate of zinc-limited cells, CaCO3 production rates per cell remain unaffected, thus leading to highly calcified cells. These results suggest that changes in dust deposition can affect biogenic calcification in oceanic regions characterized by trace metal limitation, with possible consequences for CO2 partitioning between the atmosphere and the ocean.
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  • 33
    Publication Date: 2017-03-07
    Description: The circulation of water masses in the northeastern North Atlantic Ocean has a strong influence on global climate owing to the northward transport of warm subtropical water to high latitudes1. But the ocean circulation at depths below the reach of satellite observations is difficult to measure, and only recently have comprehensive, direct observations of whole ocean basins been possible2, 3, 4. Here we present quantitative maps of the absolute velocities at two levels in the northeastern North Atlantic as obtained from acoustically tracked floats. We find that most of the mean flow transported northward by the Gulf Stream system at the thermocline level (about 600 m depth) remains within the subpolar region, and only relatively little enters the Rockall trough or the Nordic seas. Contrary to previous work5, 6, our data indicate that warm, saline water from the Mediterranean Sea reaches the high latitudes through a combination of narrow slope currents and mixing processes. At both depths under investigation, currents cross the Mid-Atlantic Ridge preferentially over deep gaps in the ridge, demonstrating that sea-floor topography can constrain even upper-ocean circulation patterns.
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  • 34
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    Nature Publishing Group
    In:  Nature, 300 (5889). pp. 245-246.
    Publication Date: 2018-03-08
    Description: A subtropical front was observed in the area south and southeast of the Azores during cruises of FS Meteor and FS Poseidon in early 1982. The front has a basically west–east extension, with considerable meandering observed. Meso-scale eddies are found on both sides. The overall flow pattern corresponds to earlier results on geopotential differences in the upper northeast Atlantic, but the baroclinic transport of the order of 107 m3 s−1 is found to be concentrated in a 60-km wide jet. We suggest here that the current band is part of the gyre circulation, resulting from a branching of the North Atlantic Current.
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  • 35
    Publication Date: 2019-01-21
    Description: Circumpolar surface waters dominate the circulation of the Southern Ocean and sustain one of the ocean's largest standing stocks of biomass thereby producing a significant output of biogenic components, mainly diatoms, to the bottom sediments. Generally transit of biogenic matter from the sea surface to the sea floor affects nutrient regeneration fuels benthic life and transfers signals to the sediment record1–5. Reliable quantification of the relationship between biological production, fractionation of skeletal and tissue components and bottom sediment accumulation depends on direct vertical flux measurements from sediment trap deployments6–9, which have proved to be most scientifically productive10–13. We now present data on vertical mass fluxes from the Southern Ocean and evidence for strong biogeochemical fractionation between organic carbon-, nitrogen- and phosphorus-containing compounds, siliceous and calcareous skeletal remains, and refractory aluminosilicates.
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  • 36
    Publication Date: 2016-05-17
    Description: IN 1989, the submersible Nautile discovered one of the most active hydrothermal fields on the modern ocean floor, in the Lau back-arc basin (Fig. 1). The field contains high-temperature white and black smokers, and as we report here, its characteristics contrast strongly with those of the hydrothermal fields found at normal mid-ocean ridges. The main differences are the acidity (pH as low as 2), chemistry and temperature (up to 400 °C) of the hydrothermal fluids, the composition of the ore deposits, and the volcanic and tectonic environments. The fluids also have very high concentrations of trace metals, and primary gold is present in the accompanying mineral deposits. Our data show that these back-arc deposits in the Lau Basin are intermediate between typical mid-ocean-ridge mineralization and massive sulphide deposits of the Kuroko type.
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  • 37
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    Nature Publishing Group
    In:  Nature, 372 (6505). pp. 421-424.
    Publication Date: 2016-06-10
    Description: Observations of large and abrupt climate changes recorded in Greenland ice cores have spurred a search for clues to their cause. This search has revealed that at six times during the last glaciation, huge armadas of icebergs launched from Canada spread across the northern Atlantic Ocean, each triggering a climate response of global extent.
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  • 38
    Publication Date: 2016-09-02
    Description: Analysis of aeolo-marine dust deposits in the subtropical eastern Atlantic enables the strength of the major wind patterns during the late Quaternary to be evaluated and gives an insight into the climate of North Africa.
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  • 39
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    Nature Publishing Group
    In:  Nature, 372 (6507). pp. 621-622.
    Publication Date: 2016-07-15
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  • 40
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    Nature Publishing Group
    In:  Nature, 421 (6921). pp. 324-325.
    Publication Date: 2016-07-19
    Description: An excellent sediment record from the Arabian Sea traces recent patterns in the activity of the Asian monsoon. It reveals both variability in monsoon strength and links with climatic events elsewhere. The monsoon is the main determinant of environmental conditions over much of Asia, and so affects the most densely populated region on Earth. Differential heating of the north Indian Ocean and the northwest Pacific, and of the Asian land-mass, cause the seasonal reversal of monsoon winds. In summer, these winds blow northwards over the northern Indian Ocean, carrying huge amounts of moisture over the neighbouring land. The ensuing heavy rainfall can have devastating consequences for human life and livelihood. Conversely, agriculture in Asia depends on monsoon rains; and the seasonal upwelling of nutrient-laden subsurface waters, driven by monsoon winds, is essential to the success of coastal fisheries.
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  • 41
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    Nature Publishing Group
    In:  Nature, 358 (6389). pp. 710-711.
    Publication Date: 2016-06-10
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  • 42
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    Nature Publishing Group
    In:  Nature, 356 (6370). pp. 587-589.
    Publication Date: 2016-06-10
    Description: ALTHOUGH anthropogenic emissions of carbon dioxide have today created a greater atmospheric CO2concentration in the Northern than in the Southern Hemisphere, a comparison of interhemispheric CO2 profiles from 1980 and 1962 led Keeling and Heimann1,2 to conclude that, before the Industrial Revolution, natural CO2 sources and sinks acted to set up a reverse (south to north) gradient which drove about one gigatonne of carbon each year through the atmosphere from the Southern to the Northern Hemisphere. At steady state, this flux must have been balanced by a counter flow of carbon from north to south through the ocean. Here we present a means to estimate this natural flux by a separation of oceanic carbon anomalies into those created by biogenic processes and those created by CO2 exchange between the ocean and atmosphere. We find that before the Industrial Revolution, deep water formed in the northern Atlantic Ocean carried about 0.6 gigatonnes of carbon annually to the Southern Hemisphere, providing support for Keeling and Heimann's proposal. The existence of this oceanic carbon pump also raises questions about the need for a large terrestrial carbon sink in the Northern Hemisphere, as postulated by Tans et al.3, to balance the present global carbon budget.
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  • 43
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    Nature Publishing Group
    In:  Nature, 359 (6398). pp. 779-780.
    Publication Date: 2016-06-10
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  • 44
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    Nature Publishing Group
    In:  Nature, 367 (6462). pp. 414-415.
    Publication Date: 2016-06-16
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  • 45
    Publication Date: 2016-07-19
    Description: A high-resolution mapping and sampling study of the Gakkel ridge was accomplished during an international ice-breaker expedition to the high Arctic and North Pole in summer 2001. For this slowest-spreading endmember of the global mid-ocean-ridge system, predictions were that magmatism should progressively diminish as the spreading rate decreases along the ridge, and that hydrothermal activity should be rare. Instead, it was found that magmatic variations are irregular, and that hydrothermal activity is abundant. A 300-kilometre-long central amagmatic zone, where mantle peridotites are emplaced directly in the ridge axis, lies between abundant, continuous volcanism in the west, and large, widely spaced volcanic centres in the east. These observations demonstrate that the extent of mantle melting is not a simple function of spreading rate: mantle temperatures at depth or mantle chemistry (or both) must vary significantly along-axis. Highly punctuated volcanism in the absence of ridge offsets suggests that first-order ridge segmentation is controlled by mantle processes of melting and melt segregation. The strong focusing of magmatic activity coupled with faulting may account for the unexpectedly high levels of hydrothermal activity observed.
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  • 46
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    Nature Publishing Group
    In:  Nature, 356 (6372). pp. 744-746.
    Publication Date: 2018-03-02
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  • 47
    Publication Date: 2017-02-24
    Description: The response of the global climate system to smoke from burning oil wells in Kuwait is investigated in a series of numerical experiments using a coupled atmosphere–ocean general circulation model with an interactive soot transport model and extended radiation scheme. The results show a decrease in surface air temperature of ~4 °C in the Gulf region. Outside this region the changes are small and statistically insignificant. No weakening of the Indian summer monsoon is observed.
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  • 48
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    Nature Publishing Group
    In:  Nature Biotechnology, 20 (8). pp. 788-789.
    Publication Date: 2019-10-22
    Description: normous amounts of potential energy lie buried in marine sediments in the form of reduced carbon compounds. The most familiar form of this vast energy reserve is petroleum, which drives the lion's share of today's energy economy. The next most obvious submarine energy reserve, even more abundant than petroleum, is methane. At deep-sea conditions of low temperature and high pressure, large amounts of this natural gas are found in sub-seafloor reservoirs of frozen methane hydrates [1]. Yet there is another abundant, but less obvious, marine energy reserve: sediment-associated organic carbon, which represents about 2% of the dry weight of marine sediments along continental margins. Is it possible to tap into this vast, dispersed form of submarine energy? If so, how? The answer, in part, is that microbes already have tapped into this large energy reserve. Now, in two papers, one in this issue [2] and the other in a previous issue of Science [3], researchers harness microbially generated power by constructing a fuel cell that can exploit the naturally occurring voltage gradient created by microbial activity in marine sediments.
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  • 49
    Publication Date: 2019-02-26
    Description: A 20-Myr record of creation of oceanic lithosphere is exposed along a segment of the central Mid-Atlantic Ridge on an uplifted sliver of lithosphere. The degree of melting of the mantle that is upwelling below the ridge, estimated from the chemistry of the exposed mantle rocks, as well as crustal thickness inferred from gravity measurements, show oscillations of ∼3–4 Myr superimposed on a longer-term steady increase with time. The time lag between oscillations of mantle melting and crustal thickness indicates that the mantle is upwelling at an average rate of ∼25 mm yr-1, but this appears to vary through time. Slow-spreading lithosphere seems to form through dynamic pulses of mantle upwelling and melting, leading not only to along-axis segmentation but also to across-axis structural variability. Also, the central Mid-Atlantic Ridge appears to have become steadily hotter over the past 20 Myr, possibly owing to north–south mantle flow.
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  • 50
    Publication Date: 2019-05-08
    Description: ISOTOPE ratios and concentrations of incompatible trace elements are remarkably successful in discriminating the tectonic origin and magmatic source components for basalts1–5. But problems remain with discriminating the tectonic origin of some tholeiites, especially where field relations and other geological evidence are ambiguous. For example, the tectonic origin of basalts from the Troodos ophiolite (Cyprus) has been debated for several decades. Most workers have been unable to distinguish between an island-arc and/or back-arc origin for the ophiolite6–8. Here we use volatile, K2O and TiO2 contents from ∼250 fresh submarine volcanic glasses to discriminate between tholeiites from different tectonic regimes. K2O÷H2O ratios are lower (〈0.70) in spread ing-centre glasses than in those from island arcs and intraplate oceanic islands. Back-arc-basin basalts can generally be separated from mid-ocean-ridge basalts by their high H2O contents. Using this information, we show that some fresh glasses from the Troodos ophiolite have a clear back-arc-basin affinity.
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  • 51
    Publication Date: 2019-10-22
    Description: In many marine environments, a voltage gradient exists across the water sediment interface resulting from sedimentary microbial activity. Here we show that a fuel cell consisting of an anode embedded in marine sediment and a cathode in overlying seawater can use this voltage gradient to generate electrical power in situ. Fuel cells of this design generated sustained power in a boat basin carved into a salt marsh near Tuckerton, New Jersey, and in the Yaquina Bay Estuary near Newport, Oregon. Retrieval and analysis of the Tuckerton fuel cell indicates that power generation results from at least two anode reactions: oxidation of sediment sulfide (a by-product of microbial oxidation of sedimentary organic carbon) and oxidation of sedimentary organic carbon catalyzed by microorganisms colonizing the anode. These results demonstrate in real marine environments a new form of power generation that uses an immense, renewable energy reservoir (sedimentary organic carbon) and has near-immediate application.
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  • 52
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    Nature Publishing Group
    In:  Nature, 403 (6765). p. 38.
    Publication Date: 2019-11-11
    Description: Living coelacanths (Latimeria chalumnae) are normally found only in the western Indian Ocean, where they inhabit submarine caves in the Comores Islands1. Two specimens have since been caught off the island of Manado Tua, north Sulawesi, Indonesia, some 10,000 kilometres away2. We sought to determine the ecological and geographic distribution of Indonesian coelacanth populations with a view to drawing up conservation measures for this extremely rare fish2,3. During our explorations, we discovered two living Indonesian coelacanths 360 km southwest of Manado Tua.
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  • 53
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    Nature Publishing Group
    In:  Nature, 287 (5783). pp. 628-630.
    Publication Date: 2016-11-15
    Description: Statoliths of cephalopods are small, hard calcareous stones which lie within the cartilaginous skulls of octopods, sepioids and teuthoids1. Fossil statoliths, clearly belonging to genera which are alive today, have previously been described from 11 Cenozoic deposits spanning from the Eocene to the Pleistocene in North America2–5. Such statoliths are of particular interest because they provide a means of studying the evolution of living cephalopod groups which have no calcareous shells, including the cosmopolitan and numerous teuthoids and octopods. Here, the first cephalopod statoliths to be recognized in European deposits are described and identified as Loligo sp. They are compared with the North American fossil Loligo species and statoliths removed from the two living Loligo species of Europe.
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  • 54
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    Nature Publishing Group
    In:  Nature, 305 (5933). pp. 403-407.
    Publication Date: 2016-11-23
    Description: Basalts from the Reykjanes Ridge contain noble gases delivered from the non-degassed lower mantle by the Iceland plume. These lower mantle gases are thought to be a mixture of planetary and solar components, as would be expected if the Earth accreted from fine silicate particles.
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  • 55
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    Nature Publishing Group
    In:  Nature, 404 (6780). p. 814.
    Publication Date: 2021-02-25
    Description: Book review of: The Change in the Weather: People, Weather, and the Science of Climate by William K. Stevens Delacorte: 2000. 432 pp. $24.95
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  • 56
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    Nature Publishing Group
    In:  Nature, 426 (6965). p. 401.
    Publication Date: 2017-03-07
    Description: The speed at which mid-ocean ridges grind out new ocean floor varies considerably. The slowest-spreading ridges are especially tough to study — but the latest data show that they are especially intriguing.
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  • 57
    Publication Date: 2017-02-28
    Description: The oceanic carbon cycle is mainly determined by the combined activities of bacteria and phytoplankton, but the interdependence of climate, the carbon cycle and the microbes is not well understood. To elucidate this interdependence, we performed high-frequency sampling of sea water along a north-south transect of the Atlantic Ocean. Here we report that the interaction of bacteria and phytoplankton is closely related to the meridional profile of water temperature, a variable directly dependent on climate. Water temperature was positively correlated with the ratio of bacterial production to primary production, and, more strongly, with the ratio of bacterial carbon demand to primary production. In warm latitudes (25 degrees N to 30 degrees S), we observed alternating patches of predominantly heterotrophic and autotrophic community metabolism. The calculated regression lines (for data north and south of the Equator) between temperature and the ratio of bacterial production to primary production give a maximum value for this ratio of 40% in the oligotrophic equatorial regions. Taking into account a bacterial growth efficiency of 30%, the resulting area of net heterotrophy (where the bacterial carbon demand for growth plus respiration exceeds phytoplankton carbon fixation) expands from 8 degrees N (27 degrees C) to 20 degrees S (23 degrees C). This suggests an output of CO2 from parts of the ocean to the atmosphere.
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  • 58
    Publication Date: 2017-02-28
    Description: Changes in iron supply to oceanic plankton are thought to have a significant effect on concentrations of atmospheric carbon dioxide by altering rates of carbon sequestration, a theory known as the 'iron hypothesis'. For this reason, it is important to understand the response of pelagic biota to increased iron supply. Here we report the results of a mesoscale iron fertilization experiment in the polar Southern Ocean, where the potential to sequester iron-elevated algal carbon is probably greatest. Increased iron supply led to elevated phytoplankton biomass and rates of photosynthesis in surface waters, causing a large drawdown of carbon dioxide and macronutrients, and elevated dimethyl sulphide levels after 13 days. This drawdown was mostly due to the proliferation of diatom stocks. But downward export of biogenic carbon was not increased. Moreover, satellite observations of this massive bloom 30 days later, suggest that a sufficient proportion of the added iron was retained in surface waters. Our findings demonstrate that iron supply controls phytoplankton growth and community composition during summer in these polar Southern Ocean waters, but the fate of algal carbon remains unknown and depends on the interplay between the processes controlling export, remineralisation and timescales of water mass subduction.
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  • 59
    Publication Date: 2017-02-28
    Description: A large fraction of globally produced methane is converted to CO2 by anaerobic oxidation in marine sediments. Strong geochemical evidence for net methane consumption in anoxic sediments is based on methane profiles, radiotracer experiments and stable carbon isotope data. But the elusive microorganisms mediating this reaction have not yet been isolated, and the pathway of anaerobic oxidation of methane is insufficiently understood. Recent data suggest that certain archaea reverse the process of methanogenesis by interaction with sulphate-reducing bacteria. Here we provide microscopic evidence for a structured consortium of archaea and sulphate-reducing bacteria, which we identified by fluorescence in situ hybridization using specific 16S rRNA-targeted oligonucleotide probes. In this example of a structured archaeal-bacterial symbiosis, the archaea grow in dense aggregates of about 100 cells and are surrounded by sulphate-reducing bacteria. These aggregates were abundant in gas-hydrate-rich sediments with extremely high rates of methane-based sulphate reduction, and apparently mediate anaerobic oxidation of methane.
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  • 60
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    Nature Publishing Group
    In:  Nature (423). pp. 280-283.
    Publication Date: 2017-03-07
    Description: Serious concerns have been raised about the ecological effects of industrialized fishing1, 2, 3, spurring a United Nations resolution on restoring fisheries and marine ecosystems to healthy levels4. However, a prerequisite for restoration is a general understanding of the composition and abundance of unexploited fish communities, relative to contemporary ones. We constructed trajectories of community biomass and composition of large predatory fishes in four continental shelf and nine oceanic systems, using all available data from the beginning of exploitation. Industrialized fisheries typically reduced community biomass by 80% within 15 years of exploitation. Compensatory increases in fast-growing species were observed, but often reversed within a decade. Using a meta-analytic approach, we estimate that large predatory fish biomass today is only about 10% of pre-industrial levels. We conclude that declines of large predators in coastal regions5 have extended throughout the global ocean, with potentially serious consequences for ecosystems5, 6, 7. Our analysis suggests that management based on recent data alone may be misleading, and provides minimum estimates for unexploited communities, which could serve as the 'missing baseline'8 needed for future restoration efforts.
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  • 61
    Publication Date: 2017-02-28
    Description: The formation of calcareous skeletons by marine planktonic organisms and their subsequent sinking to depth generates a continuous rain of calcium carbonate to the deep ocean and underlying sediments1. This is important in regulating marine carbon cycling and ocean–atmosphere CO2 exchange2. The present rise in atmospheric CO2 levels3 causes significant changes in surface ocean pH and carbonate chemistry4. Such changes have been shown to slow down calcification in corals and coralline macroalgae5,6, but the majority of marine calcification occurs in planktonic organisms. Here we report reduced calcite production at increased CO2 concentrations in monospecific cultures of two dominant marine calcifying phytoplankton species, the coccolithophorids Emiliania huxleyi and Gephyrocapsa oceanica . This was accompanied by an increased proportion of malformed coccoliths and incomplete coccospheres. Diminished calcification led to a reduction in the ratio of calcite precipitation to organic matter production. Similar results were obtained in incubations of natural plankton assemblages from the north Pacific ocean when exposed to experimentally elevated CO2 levels. We suggest that the progressive increase in atmospheric CO2 concentrations may therefore slow down the production of calcium carbonate in the surface ocean. As the process of calcification releases CO2 to the atmosphere, the response observed here could potentially act as a negative feedback on atmospheric CO2 levels.
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  • 62
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    Nature Publishing Group
    In:  Nature, 303 (5916). pp. 422-423.
    Publication Date: 2019-04-16
    Description: Strandings of the giant squid, Architeuthis monachus (Steen-strup), have always stirred attention because of the rarity and enormous size of these cephalopods. These animals have never been observed in their natural habitat and little is known about their physiology and ecology. Stranding of giant squids in Newfoundland waters has been correlated with the inflow of warm water, suggesting that increased temperature may be causing their death1. Squids have also been carried to the Norwegian coast with the warm North Atlantic current2 and on 23 August 1982 a live specimen was caught off Radöy near Bergen, Norway (Fig. 1). This catch gave an unprecedented opportunity to study the effects of temperature on the oxygen binding properties of blood from the giant squid. The present finding of an excess of a fourfold decrease in O2 affinity when temperature is increased from 6.4 to 15°C strongly suggests that giant squids may suffocate from arterial desaturation when increased ambient temperatures are experierced.
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  • 63
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    Nature Publishing Group
    In:  Nature, 410 (6827). pp. 427-428.
    Publication Date: 2017-02-28
    Description: To what extent was the Arctic Ocean glaciated in the past? Heavily, according to data, gathered by a submarine, which show considerable ice-scouring of topography in parts of the ocean basin
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  • 64
    Publication Date: 2023-09-26
    Description: The dehydration of subducting oceanic crust and upper mantle has been inferred both to promote the partial melting leading to arc magmatism and to induce intraslab intermediate-depth earthquakes, at depths of 50–300 km. Yet there is still no consensus about how slab hydration occurs or where and how much chemically bound water is stored within the crust and mantle of the incoming plate. Here we document that bending-related faulting of the incoming plate at the Middle America trench creates a pervasive tectonic fabric that cuts across the crust, penetrating deep into the mantle. Faulting is active across the entire ocean trench slope, promoting hydration of the cold crust and upper mantle surrounding these deep active faults. The along-strike length and depth of penetration of these faults are also similar to the dimensions of the rupture area of intermediate-depth earthquakes.
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  • 65
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    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 584-590 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] The conformational properties of a 16 residue peptide, corresponding to the second β-hairpin of the B1 domain of protein G, have been studied by nuclear magnetic resonance spectroscopy (NMR). This fragment is monomeric under our experimental conditions and in pure water adopts a population ...
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  • 66
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    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 605-614 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] The solution structure of the DNA-binding domain of the Drosophila heat shock transcription factor, as determined by multidimensional multinuclear NMR, resembles that of the helix-turn-helix class of DNA-binding proteins. The domain comprises a four-stranded antiparallel β-sheet, packed ...
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  • 67
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    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 615-620 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Both randomized oligonucleotide cassette mutagenesis and site-directed mutagenesis have been used in combination with a yeast genetic screen to identify critical residues in the DNA-binding domain of heat shock transcription factor from Saccharomyces cerevisiae. Most of the surface residues in this ...
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  • 68
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Pertussis toxin is an exotoxin from the bacterium Bordetella pertussis which is important the pathogenesis of whooping cough and the generation of a protective immune response. The diverse biological activities of the toxin depend on its ability to recognize carbohydrate-containing receptors on a ...
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  • 69
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    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 502-504 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Sir — Protein splicing1,2 modifies the polypeptide chain of a gene product by excision of intervening sequence(s) and religation of the remainder. An early example was found during the post-translational processing of concanavalin A (Con A) in maturing jackbeans3,4. This takes an unusual ...
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  • 70
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    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 507-510 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Sir — The sequences of many animal mitochondrial tRNAs (mtRNAs) are perplexing in that they display both primary and presumed secondary structural patterns which deviate significantly from the norm as defined by several highly conserved nucleotides and the cloverleaf structure1. As some of ...
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  • 71
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    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 492-494 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Structural biologists have long realised that nature is subtle rather than simple. The classification of proteolytic enzymes — which once seemed so clearcut — into cysteine, serine, aspartate and zinc proteinases was previously complicated by the finding that the subtilisins had ...
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  • 72
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    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 557-557 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] The structure of the trp repressor/operator complex caused something of a stir when it was published over five years ago. Of the four base-specific hydrogen bonds between a repressor monomer and operator DNA, three are indirect, being mediated through water molecules: a thoroughly unexpected result ...
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  • 73
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    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 417-420 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Since their discovery in 19861, Src Homology 2 (SH2) domains have attracted enormous attention from the fields of cell biology, biochemistry and structural biology. As a result, we now have a much more detailed picture of the function, structure and ligand specificity of this 100 amino acid protein ...
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  • 74
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    [s.l.] : Nature Publishing Group
    Nature structural biology 1 (1994), S. 524-531 
    ISSN: 1072-8368
    Source: Nature Archives 1869 - 2009
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    Notes: [Auszug] The Fe+3-OOH complex of peroxidases has a very short half life, and its structure cannot be determined by conventional methods. The Fe+2-O2 complex provides a useful structural model for this intermediate, as it differs by only one electron and one proton from the transient Fe+3-OOH complex. We ...
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    Nature structural biology 1 (1994), S. 532-537 
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    Notes: [Auszug] The crystal structure of the bromoperoxidase A2 from Streptomyces aureofaciens (ATCC 10762) has been determined by isomorphous replacement and refined to 2.05 Å resolution with an R-value of 18.4%. The enzyme catalyzes the bromination of organic compounds in the presence of bromide and ...
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    Nature structural biology 1 (1994), S. 558-558 
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    Notes: [Auszug] Nature Structural Biology 1, 368–373 (1994). The abstract and Table 1 were printed with a number of typographical errors which are corrected in the version below. The frequent occurrence of β-sheet promoting residues such as Ile, Val, and Thr in the α-helical transmembrane ...
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    Nature structural biology 1 (1994), S. 411-412 
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    Notes: [Auszug] What are the mechanisms that underlie the evolution of protein form? Although the details of intra- or intermodular interactions are often moulded by gradual change involving individual residues, there is much evidence indicating that the overall architecture of a polypeptide chain is formed by the ...
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    Nature structural biology 1 (1994), S. 421-422 
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    Notes: [Auszug] Sir—Using global structure comparisons, Holm et all have identified a superfamily of three NAD(P) linked oxidoreductases; dihydropteridine reductase (DHR)2, UDP galactose-4-epimerase (UDP)3 and 3α, 20βhydroxysteroid dehydrogenase (HSD)4. They also suggest that apart from a common ...
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    Nature structural biology 1 (1994), S. 434-438 
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    Notes: [Auszug] To measure the thermodynamic consequences of the reduction in the number of polypeptide-chain conformations that accompanies protein folding, we developed a method called loop permutation analysis. In this approach, the stabilizing contributions of three engineered disulphide bonds were compared in ...
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    Nature structural biology 1 (1994), S. 461-468 
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    Notes: [Auszug] The crystal structure of Serratia endonuclease has been solved to 2.1 Å by multiple isomorphous replacement. This magnesium-dependent enzyme is equally active against single- and double-stranded DNA, as well as RNA, without any apparent base preference. The Serratia endonuclease fold is ...
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    Nature structural biology 1 (1994), S. 345-349 
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    Notes: [Auszug] Scientific exploration has always progressed in fits and starts. As new themes are exposed these often become ‘fashionable’ and so for a time develop into focal points for further research by large numbers of scientists. In this way the discovery in 1985 of the ‘zinc-finger ...
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    Nature structural biology 1 (1994), S. 230-233 
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    Notes: [Auszug] The study of cooperative ligand binding among the four subunits of haemoglobin has played a central role in the understanding of allosteric transitions in a large number of enzymes. Haem iron out-of–plane motion has been suggested to be the trigger for the cooperative transition of ...
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    Nature structural biology 1 (1994), S. 213-214 
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    Notes: [Auszug] Sir — Most biochemists would probably agree that proteins in the native state are not knotted. The protein folding mechanism is not perceived as including reptative, snake-like motions of the chain along its own contour. However, reptation would be necessary for the protein to knot itself. ...
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    Nature structural biology 1 (1994), S. 221-225 
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    Notes: [Auszug] Src homology 3 (SH3) domains bind specific proline-rich peptide motifs. To identify interactions involved in peptide recognition, we have mutated residues on the putative binding surface of an SH3 domain from the Caenorhabditis elegans protein Sem-5. Among the most critical positions are three ...
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    Nature structural biology 1 (1994), S. 239-245 
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    Notes: [Auszug] The three–dimensional structure of calbindin D9k in the absence of Ca2+ has been determined using NMR spectroscopy in solution, allowing the first direct analysis of the consequences of Ca2+ binding for a member of the calmodulin superfamily of proteins. The overall response in calbindin D9k ...
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    Nature structural biology 1 (1994), S. 129-130 
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    Notes: [Auszug] The 1990s have seen a significant expansion of the lexicon of structural motifs in proteins known to interact with DNA, as well as an ever-increasing wealth of detail about previously characterized DNA-binding domains. And the first quarter of 1994 has not been a disappointment; papers in this1 and ...
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    Nature structural biology 1 (1994), S. 146-147 
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    Notes: [Auszug] Sir — The classical NAD binding fold, as seen in lactate dehydrogenase or liver alcohol dehydrogenases, consists of six strands of parallel β-pleated sheet flanked on either side by α-helices, with ∼100 structurally conserved residues1. Here, we report a novel subclass of ...
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    Nature structural biology 1 (1994), S. 149-156 
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    Notes: [Auszug] Elimination of an interaction which forms in denatured cytochrome c enables the majority of the molecules to fold to the native state on a 15 ms time scale, without populating observable intermediates. These results are contrary to the current view that particular steps in protein folding, ...
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    Nature structural biology 1 (1994), S. 176-185 
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    Notes: [Auszug] The crystal structure of L–lactate dehydrogenase from Bifidobacterium longum, determined to 2.5 Å resolution, contains a regular 1:1 complex of T– and R–state tetramers. A comparison of these two structures within the same crystal lattice and kinetical characterization of ...
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    Notes: [Auszug] The three–dimensional structure of the catalytic domain of stromelysin–1 complexed with an N–carboxyl alkyl inhibitor has been determined by NMR methods. The global fold consists of three helices, a five stranded β–sheet and a methionine located in a turn near the ...
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    Nature structural biology 1 (1994), S. 73-75 
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    Notes: [Auszug] As the process of drug discovery focuses on structure-based design, the small number of available three-dimensional structures compared to the wealth of gene sequences becomes an increasing frustration. One solution to the paucity of structural information is to search for proteins with a common ...
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    Nature structural biology 1 (1994), S. 80-80 
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    Notes: [Auszug] A model of the oligomeric form of the bacterial toxin aerolysin from Aeromonas hydrophila that inserts into the membranes of ill-fated host cells is shown on the right — taken from Parker et al., Nature 367, 292–295 (1994). The seven toxin monomers that make up the proposed channel are ...
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    Nature structural biology 1 (1994), S. 83-88 
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    Notes: [Auszug] Telomeric C–strand sequences form non–Watson–Crick base–paired structures in supercoiled plasmids and in oligonucleotides at low pH. Here we examine oligonucleotides composed of 2 or 4 repeats of the human telomeric C–strand sequence d(CCCTAA)n. At low pH, the ...
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    Nature structural biology 1 (1994), S. 89-94 
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    Notes: [Auszug] One– and two–dimensional NMR shows that the carcinogen 2–aminofluorene exists in two unique, interchangeable conformations when covalently bound to a model human c–H–ras1 proto–oncogene codon 61 oligomer duplex. In one conformation the 2–aminofluorene ...
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    Nature structural biology 1 (1994), S. 833-834 
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    Notes: [Auszug] The disparate structural themes that have caught the imagination of readers of this, and other journals over the last year provide an apposite illustration of the ever widening impact of structural biology on the efforts of scientists to understand the workings of the cell and the molecular ...
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    Notes: [Auszug] The activity of DnaK (Hsp70) chaperones in assisting protein folding relies on DnaK binding and ATP–controlled release of protein substrates. The ATPase activity of DnaK is tightly controlled by the nucleotide exchange factor GrpE. We find that GrpE interacts stably with the ...
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    Nature structural biology 1 (1994), S. 846-849 
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    Notes: [Auszug] In discussing the genetic code in 1966 Crick proposed that tRNA was “Nature's attempt to make an RNA play the role of a protein“1.The sub- sequent X-ray crystal structure de terminations of tRNAs showed Crick's hypothesis to be correct. Pley, Flaherty and McKay now present the structure ...
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    Notes: [Auszug] Members of the ets family of transcription factors share a conserved DNA-binding domain, the ets domain. By using multidimensional NMR, we have determined the structure of the ets domain of human Fli-1 in the DNA-bound form. It consists of three α-helices and a four-stranded β-sheet, ...
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    Notes: [Auszug] GRB2 is a small adaptor protein of 217 amino acids comprising one SH2 domain surrounded by two SH3 domains. GRB2 couples receptor tyrosine kinase activation to Ras signalling by interacting, through its SH3 domains, to the carboxy-terminal proline-rich regions of the guanine nucleotide exchange ...
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    Nature structural biology 1 (1994), S. 915-920 
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    Notes: [Auszug] Analysis of human and mouse immunoglobulins has shown that five of six hypervariable regions that form the antigen binding site have a small repertoire of main chain conformations (canonical structures). Cartilaginous fishes are the most distantly related species to humans known to have an immune ...
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