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  • 1
    Publication Date: 2022-05-25
    Description: Author Posting. © Ecological Society of America, 2005. This article is posted here by permission of Ecological Society of America for personal use, not for redistribution. The definitive version was published in Ecological Applications 15 (2005): 1036–1052, doi:10.1890/04-0434.
    Description: Boltonia decurrens is an endangered plant restricted to the Illinois River Valley. Its complex life cycle has evolved in response to the dynamics of the historic flood regime, which has changed dramatically in the last century due to the construction of navigation dams and agricultural levees. To explore the effects of these changes, we developed deterministic and stochastic matrix population models of the demography of Boltonia. We used periodic matrix models to incorporate intra-annual seasonal variation. We estimated parameters as a function of the timing of spring flood recession (early or late) and of growing season precipitation (high or low). Late floods and/or low precipitation reduce population growth (λ). Early floods and high precipitation lead to explosive population growth. Elasticity analysis shows that changes in floods and precipitation alter the life history pathways responsible for population growth, from annual to biennial and eventually clonal pathways. We constructed and analyzed a stochastic model in which flood timing and precipitation vary independently, and we computed the stochastic growth rate (log λs) and the variance growth rate (σ2) as functions of the frequency of late floods and low precipitation. Using historical data on floods and rainfall over the last 100 years, we found that log λs has declined as a result of hydrological changes accompanying the regulation of the river. Stochastic elasticity analysis showed that over that time the contribution of annual life history pathways to log λs has declined as the contributions of biennial and clonal pathways have increased. Over the same time period, σ2 has increased, in agreement with observations of large fluctuations in local B. decurrens populations. Undoubtedly, many plant and animal species evolved in concert with dynamic habitats and are now threatened by anthropogenic changes in those dynamics. The data and analyses used in this study can be applied to management and development strategies to preserve other dynamic systems.
    Description: This work was supported by grants to M. Smith from NSF (DEB 9509763, DED 9321517), USACE, Illinois Groundwater Consortium and USFWS, and an EPA STAR grant (U- 91578101-2) to P. Mettler. H. Caswell also received support from NSF grant OCE-9983976 and EPA grant R-82908901, and a Maclaurin Fellowship from the New Zealand Institute of Mathematics and its Applications.
    Keywords: Boltonia decurrens ; Conservation ; Elasticity ; Floodplain ; Flood regime ; LTRE ; Matrix population model ; Periodic matrix model ; Stochastic elasticity ; Stochastic environment ; Stochastic matrix model ; Threatened species
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
    Publication Date: 2022-05-25
    Description: Author Posting. © Ecological Society of America, 2005. This article is posted here by permission of Ecological Society of America for personal use, not for redistribution. The definitive version was published in Ecological Applications 15 (2005): 2097–2108, doi:10.1890/04-1762.
    Description: We investigated the effects of fire on population growth rate and invasive spread of the perennial tussock grass Molinia caerulea. During the last decades, this species has invaded heathland communities in Western Europe, replacing typical heathland species such as Calluna vulgaris and Erica tetralix. M. caerulea is considered a major threat to heathland conservation. In 1996, a large and unintended fire destroyed almost one-third of the Kalmthoutse Heide, a large heathland area in northern Belgium. To study the impact of this fire on the population dynamics and invasive spread of M. caerulea, permanent monitoring plots were established both in burned and unburned heathland. The fate of each M. caerulea individual in these plots was monitored over four years (1997–2000). Patterns of seed dispersal were inferred from a seed germination experiment using soil cores sampled one month after seed rain at different distances from seed-producing plants. Based on these measures, we calculated projected rates of spread for M. caerulea in burned and unburned heathland. Elasticity and sensitivity analyses were used to determine vital rates that contributed most to population growth rate, and invasion speed. Invasion speed was, on average, three times larger in burned compared to unburned plots. Dispersal distances on the other hand, were not significantly different between burned and unburned plots indicating that differences in invasive spread were mainly due to differences in demography. Elasticities for fecundity and growth of seedlings and juveniles were higher for burned than for unburned plots, whereas elasticities for survival were higher in unburned plots. Finally, a life table response experiment (LTRE) analysis revealed that the effect of fire was mainly contributed by increases in sexual reproduction (seed production and germination) and growth of seedlings and juveniles. Our results clearly showed increased invasive spread of M. caerulea after fire, and call for active management guidelines to prevent further encroachment of the species and to reduce the probability of large, accidental fires in the future. Mowing of resprouted plants before flowering is the obvious management tactic to halt massive invasive spread of the species after fire.
    Description: This work was supported by the Flemish Fund for Scientific Research (FWO) to HJ, the U.S. National Science foundation (DEB-0235692, OCE-0083976), and the U.S. Environmental Protection Agency (R-8290891) to MGN.
    Keywords: Disturbance ; Elasticity ; Fire ; Integrodifference equations ; Invasive spread ; LTRE ; Matrix population model ; Molinia caerulea ; Sensitivity
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 3
    Publication Date: 2014-05-16
    Description: Groundwater use in California's San Joaquin Valley exceeds replenishment of the aquifer, leading to substantial diminution of this resource and rapid subsidence of the valley floor. The volume of groundwater lost over the past century and a half also represents a substantial reduction in mass and a large-scale unburdening of the lithosphere, with significant but unexplored potential impacts on crustal deformation and seismicity. Here we use vertical global positioning system measurements to show that a broad zone of rock uplift of up to 1-3 mm per year surrounds the southern San Joaquin Valley. The observed uplift matches well with predicted flexure from a simple elastic model of current rates of water-storage loss, most of which is caused by groundwater depletion. The height of the adjacent central Coast Ranges and the Sierra Nevada is strongly seasonal and peaks during the dry late summer and autumn, out of phase with uplift of the valley floor during wetter months. Our results suggest that long-term and late-summer flexural uplift of the Coast Ranges reduce the effective normal stress resolved on the San Andreas Fault. This process brings the fault closer to failure, thereby providing a viable mechanism for observed seasonality in microseismicity at Parkfield and potentially affecting long-term seismicity rates for fault systems adjacent to the valley. We also infer that the observed contemporary uplift of the southern Sierra Nevada previously attributed to tectonic or mantle-derived forces is partly a consequence of human-caused groundwater depletion.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Amos, Colin B -- Audet, Pascal -- Hammond, William C -- Burgmann, Roland -- Johanson, Ingrid A -- Blewitt, Geoffrey -- England -- Nature. 2014 May 22;509(7501):483-6. doi: 10.1038/nature13275. Epub 2014 May 14.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Geology Department, Western Washington University, Bellingham, Washington 98225-9080, USA. ; Department of Earth Sciences, University of Ottawa, Ottawa, Ontario K1N 6N5, Canada. ; Nevada Geodetic Laboratory, Nevada Bureau of Mines and Geology and Nevada Seismological Laboratory, University of Nevada, Reno, Nevada 89557, USA. ; 1] Berkeley Seismological Laboratory, University of California, Berkeley, California 94720-4760, USA [2] Department of Earth and Planetary Science, University of California, Berkeley, California 97720-4767, USA. ; Berkeley Seismological Laboratory, University of California, Berkeley, California 94720-4760, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/24828048" target="_blank"〉PubMed〈/a〉
    Keywords: *Altitude ; California ; Earthquakes/*statistics & numerical data ; Elasticity ; Environmental Monitoring ; Geographic Information Systems ; Groundwater/*analysis ; *Models, Theoretical ; Seasons ; Water Supply/analysis/*statistics & numerical data
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
    Topics: Biology , Chemistry and Pharmacology , Medicine , Natural Sciences in General , Physics
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  • 4
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    Nature Publishing Group (NPG)
    Publication Date: 2013-01-16
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Jonietz, Erika -- England -- Nature. 2012 Nov 22;491(7425):S56-7.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/23320288" target="_blank"〉PubMed〈/a〉
    Keywords: Biomechanical Phenomena ; Biophysics/methods ; Cell Communication ; *Cell Physiological Processes ; Drug Resistance, Neoplasm ; Elasticity ; Hardness ; Humans ; Medical Oncology ; *Models, Biological ; Neoplasm Invasiveness ; Neoplasm Metastasis ; Neoplasms/diagnosis/drug therapy/genetics/*pathology ; Rheology ; Tumor Microenvironment ; Viscosity
    Print ISSN: 0028-0836
    Electronic ISSN: 1476-4687
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  • 5
    Publication Date: 2012-09-08
    Description: Hydrogels are used as scaffolds for tissue engineering, vehicles for drug delivery, actuators for optics and fluidics, and model extracellular matrices for biological studies. The scope of hydrogel applications, however, is often severely limited by their mechanical behaviour. Most hydrogels do not exhibit high stretchability; for example, an alginate hydrogel ruptures when stretched to about 1.2 times its original length. Some synthetic elastic hydrogels have achieved stretches in the range 10-20, but these values are markedly reduced in samples containing notches. Most hydrogels are brittle, with fracture energies of about 10 J m(-2) (ref. 8), as compared with approximately 1,000 J m(-2) for cartilage and approximately 10,000 J m(-2) for natural rubbers. Intense efforts are devoted to synthesizing hydrogels with improved mechanical properties; certain synthetic gels have reached fracture energies of 100-1,000 J m(-2) (refs 11, 14, 17). Here we report the synthesis of hydrogels from polymers forming ionically and covalently crosslinked networks. Although such gels contain approximately 90% water, they can be stretched beyond 20 times their initial length, and have fracture energies of approximately 9,000 J m(-2). Even for samples containing notches, a stretch of 17 is demonstrated. We attribute the gels' toughness to the synergy of two mechanisms: crack bridging by the network of covalent crosslinks, and hysteresis by unzipping the network of ionic crosslinks. Furthermore, the network of covalent crosslinks preserves the memory of the initial state, so that much of the large deformation is removed on unloading. The unzipped ionic crosslinks cause internal damage, which heals by re-zipping. These gels may serve as model systems to explore mechanisms of deformation and energy dissipation, and expand the scope of hydrogel applications.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642868/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3642868/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Sun, Jeong-Yun -- Zhao, Xuanhe -- Illeperuma, Widusha R K -- Chaudhuri, Ovijit -- Oh, Kyu Hwan -- Mooney, David J -- Vlassak, Joost J -- Suo, Zhigang -- R01 DE013033/DE/NIDCR NIH HHS/ -- R37 DE013033/DE/NIDCR NIH HHS/ -- England -- Nature. 2012 Sep 6;489(7414):133-6. doi: 10.1038/nature11409.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22955625" target="_blank"〉PubMed〈/a〉
    Keywords: Acrylic Resins/chemistry ; Alginates/chemistry ; Carbohydrate Sequence ; Elasticity ; Glucuronic Acid/chemistry ; Hexuronic Acids/chemistry ; Hydrogels/chemical synthesis/*chemistry ; Materials Testing ; Molecular Sequence Data ; Polymers/chemical synthesis/chemistry
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  • 6
    Publication Date: 2012-02-03
    Description: Natural materials are renowned for exquisite designs that optimize function, as illustrated by the elasticity of blood vessels, the toughness of bone and the protection offered by nacre. Particularly intriguing are spider silks, with studies having explored properties ranging from their protein sequence to the geometry of a web. This material system, highly adapted to meet a spider's many needs, has superior mechanical properties. In spite of much research into the molecular design underpinning the outstanding performance of silk fibres, and into the mechanical characteristics of web-like structures, it remains unknown how the mechanical characteristics of spider silk contribute to the integrity and performance of a spider web. Here we report web deformation experiments and simulations that identify the nonlinear response of silk threads to stress--involving softening at a yield point and substantial stiffening at large strain until failure--as being crucial to localize load-induced deformation and resulting in mechanically robust spider webs. Control simulations confirmed that a nonlinear stress response results in superior resistance to structural defects in the web compared to linear elastic or elastic-plastic (softening) material behaviour. We also show that under distributed loads, such as those exerted by wind, the stiff behaviour of silk under small deformation, before the yield point, is essential in maintaining the web's structural integrity. The superior performance of silk in webs is therefore not due merely to its exceptional ultimate strength and strain, but arises from the nonlinear response of silk threads to strain and their geometrical arrangement in a web.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Cranford, Steven W -- Tarakanova, Anna -- Pugno, Nicola M -- Buehler, Markus J -- England -- Nature. 2012 Feb 1;482(7383):72-6. doi: 10.1038/nature10739.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Laboratory for Atomistic and Molecular Mechanics, Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, Massachusetts 02139, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/22297972" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomechanical Phenomena ; Elasticity ; Hardness ; Models, Biological ; Silk/*chemistry ; *Spiders/physiology ; *Tensile Strength ; Wind
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  • 7
    Publication Date: 2011-08-05
    Description: The developing vertebrate gut tube forms a reproducible looped pattern as it grows into the body cavity. Here we use developmental experiments to eliminate alternative models and show that gut looping morphogenesis is driven by the homogeneous and isotropic forces that arise from the relative growth between the gut tube and the anchoring dorsal mesenteric sheet, tissues that grow at different rates. A simple physical mimic, using a differentially strained composite of a pliable rubber tube and a soft latex sheet is consistent with this mechanism and produces similar patterns. We devise a mathematical theory and a computational model for the number, size and shape of intestinal loops based solely on the measurable geometry, elasticity and relative growth of the tissues. The predictions of our theory are quantitatively consistent with observations of intestinal loops at different stages of development in the chick embryo. Our model also accounts for the qualitative and quantitative variation in the distinct gut looping patterns seen in a variety of species including quail, finch and mouse, illuminating how the simple macroscopic mechanics of differential growth drives the morphology of the developing gut.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335276/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335276/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Savin, Thierry -- Kurpios, Natasza A -- Shyer, Amy E -- Florescu, Patricia -- Liang, Haiyi -- Mahadevan, L -- Tabin, Clifford J -- R01 HD047360/HD/NICHD NIH HHS/ -- R01 HD047360-07/HD/NICHD NIH HHS/ -- England -- Nature. 2011 Aug 3;476(7358):57-62. doi: 10.1038/nature10277.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21814276" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Biomechanical Phenomena ; Chick Embryo ; Computer Simulation ; Elasticity ; Female ; Finches/embryology ; Intestines/*anatomy & histology/*embryology ; Mesentery/anatomy & histology/embryology ; Mice ; *Models, Anatomic ; *Models, Biological ; Quail/embryology ; Rotation ; Rubber
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  • 8
    Publication Date: 2011-04-29
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Huck, Wilhelm T S -- England -- Nature. 2011 Apr 28;472(7344):425-6. doi: 10.1038/472425a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21525922" target="_blank"〉PubMed〈/a〉
    Keywords: Biosensing Techniques ; Drug Delivery Systems ; Elasticity ; Elastomers/chemistry ; Molecular Conformation/radiation effects ; Pliability ; Polymers/*chemistry/*radiation effects ; Tissue Engineering
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  • 9
    Publication Date: 2011-03-18
    Description: Inelastic light scattering spectroscopy has, since its first discovery, been an indispensable tool in physical science for probing elementary excitations, such as phonons, magnons and plasmons in both bulk and nanoscale materials. In the quantum mechanical picture of inelastic light scattering, incident photons first excite a set of intermediate electronic states, which then generate crystal elementary excitations and radiate energy-shifted photons. The intermediate electronic excitations therefore have a crucial role as quantum pathways in inelastic light scattering, and this is exemplified by resonant Raman scattering and Raman interference. The ability to control these excitation pathways can open up new opportunities to probe, manipulate and utilize inelastic light scattering. Here we achieve excitation pathway control in graphene with electrostatic doping. Our study reveals quantum interference between different Raman pathways in graphene: when some of the pathways are blocked, the one-phonon Raman intensity does not diminish, as commonly expected, but increases dramatically. This discovery sheds new light on the understanding of resonance Raman scattering in graphene. In addition, we demonstrate hot-electron luminescence in graphene as the Fermi energy approaches half the laser excitation energy. This hot luminescence, which is another form of inelastic light scattering, results from excited-state relaxation channels that become available only in heavily doped graphene.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Chen, Chi-Fan -- Park, Cheol-Hwan -- Boudouris, Bryan W -- Horng, Jason -- Geng, Baisong -- Girit, Caglar -- Zettl, Alex -- Crommie, Michael F -- Segalman, Rachel A -- Louie, Steven G -- Wang, Feng -- England -- Nature. 2011 Mar 31;471(7340):617-20. doi: 10.1038/nature09866. Epub 2011 Mar 16.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Physics, University of California at Berkeley, Berkeley, California 94720, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21412234" target="_blank"〉PubMed〈/a〉
    Keywords: Elasticity ; Electrons ; Graphite/*chemistry ; *Light ; Luminescence ; Photons ; *Quantum Theory ; *Scattering, Radiation ; Spectrum Analysis, Raman ; Static Electricity
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  • 10
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    Nature Publishing Group (NPG)
    Publication Date: 2011-02-19
    Description: 〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Hersen, Pascal -- Ladoux, Benoit -- England -- Nature. 2011 Feb 17;470(7334):340-1. doi: 10.1038/470340a.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/21331032" target="_blank"〉PubMed〈/a〉
    Keywords: Biomechanical Phenomena ; Cell Adhesion/physiology ; Cell Movement/*physiology ; Dictyostelium/*cytology ; Elasticity ; Single-Cell Analysis/*methods
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