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  • Oxford University Press  (85,497)
  • American Association for the Advancement of Science (AAAS)
  • American Institute of Physics (AIP)
  • 2015-2019  (130,239)
  • 1945-1949  (1,681)
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  • 1
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    Oxford University Press
    Publication Date: 2024-03-23
    Description: "With so much media and political criticism of their shortcomings and failures, it is easy to overlook the fact that many governments work pretty well much of the time. Great Policy Successes turns the spotlight on instances of public policy that are remarkably successful. It develops a framework for identifying and assessing policy successes, paying attention not just to their programmatic outcomes but also to the quality of the processes by which policies are designed and delivered, the level of support and legitimacy they attain, and the extent to which successful performance endures over time. The bulk of the book is then devoted to 15 detailed case studies of striking policy successes from around the world, including Singapore's public health system, Copenhagen and Melbourne's rise from stilted backwaters to the highly liveable and dynamic urban centres they are today, Brazil's Bolsa Familia poverty relief scheme, the US's GI Bill, and Germany's breakthrough labour market reforms of the 2000s. Each case is set in context, its main actors are introduced, key events and decisions are described, the assessment framework is applied to gauge the nature and level of its success, key contributing factors to success are identified, and potential lessons and future challenges are identified. Purposefully avoiding the kind of heavy theorizing that characterizes many accounts of public policy processes, each case is written in an accessible and narrative style ideally suited for classroom use in conjunction with mainstream textbooks on public policy design, implementation, and evaluation.
    Keywords: public policy ; policy evaluation ; government ; governance ; social policy ; health policy ; economic policy ; thema EDItEUR::J Society and Social Sciences::JP Politics and government
    Language: English
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  • 2
    Publication Date: 2021-06-21
    Description: We present the analysis of rotational and translational ground motions from earthquakes recorded during October–November 2016, in association with the Central Italy seismic sequence. We use co-located measurements of the vertical ground rotation rate from a large ring laser gyroscope and the three components of ground velocity from a broad-band seismometer. Both instruments are positioned in a deep underground environment, within the Gran Sasso National Laboratories of the Istituto Nazionale di Fisica Nucleare. We collected dozens of events spanning the 3.5–5.9 magnitude range and epicentral distances between 30 and 70 km. This data set constitutes an unprecedented observation of the vertical rotational motions associated with an intense seismic sequence at local distance. Under the plane-wave approximation we process the data set in order to get an experimental estimation of the events backazimuth. Peak values of rotation rate (PRR) and horizontal acceleration (PGA) are markedly correlated, according to a scaling constant which is consistent with previous measurements from different earthquake sequences. We used a prediction model in use for Italy to calculate the expected PGA at the recording site, obtaining consequently predictions for PRR. Within the modelling uncertainties, predicted rotations are consistent with the observed ones, suggesting the possibility of establishing specific attenuation models for ground rotations, like the scaling of peak velocity and peak acceleration in empirical ground-motion prediction relationships. In a second step, after identifying the direction of the incoming wavefield, we extract phase-velocity data using the spectral ratio of the translational and rotational components. This analysis is performed over time windows associated with the P-coda, S-coda and Lg phase. Results are consistent with independent estimates of shear wave velocities in the shallow crust of the Central Apennines
    Description: Published
    Description: 705-715
    Description: 4T. Sismicità dell'Italia
    Description: JCR Journal
    Keywords: Rotational seismology ; Surface waves and free oscillations ; Wave propagation
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 3
    Publication Date: 2019-03-13
    Description: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2015. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Description: Mud volcanoes are geological systems often characterized by elevated fluid pressures at depth deviating from hydrostatic conditions. This near-critical state makes mud volcanoes particularly sensitive to external forcing induced by natural or man-made perturbations. We used the Nirano mud volcanic field as a natural laboratory to test pre- and post-seismic effects generated by distant earthquakes.We first characterized the subsurface structure of the Nirano mud volcanic field with a geoelectrical study. Next, we deployed a broad-band seismic station in the area to understand the typical seismic signal generated by the mud volcano. Seismic records show a background noise below 2 s, sometimes interrupted by pulses of drumbeatlike high-frequency signals lasting from several minutes to hours. To date this is the first observation of drumbeat signal observed in mud volcanoes. In 2013 June we recorded a M4.7 earthquake, that occurred approximately 60 km far from our seismic station. According to empirical estimations the Nirano mud volcanic field should not have been affected by the M4.7 earthquake. Yet, before the seismic event we recorded an increasing amplitude of the signal in the 10–20 Hz frequency band. The signal emerged approximately two hours before the earthquake and lasted for about three hours. Our statistical analysis suggests the presence of a possible precursory signal about 10 min before the earthquake.
    Description: Published
    Description: 907–917
    Description: 7A. Geofisica per il monitoraggio ambientale
    Description: JCR Journal
    Keywords: Tomography ; Gas and hydrate systems ; Earthquake interaction, forecasting, and prediction ; Seismicity and tectonics ; Volcano seismology ; Mud volcanism
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 4
    Publication Date: 2021-11-09
    Description: This article has been accepted for publication in Geophysical Journal International ©: The Authors 2019. Published by Oxford University Press on behalf of the Royal Astronomical Society. All rights reserved. Uploaded in accordance with the publisher's self-archiving policy.
    Description: The Amatrice–Norcia–Visso sequence is characterized by complex behaviour that is somewhat atypical of main-shock–aftershock sequences, as there were multiple large main shocks that continued for months. In this study we focus on the Amatrice sequence (main shock 2016 August 24, Mw = 5.97) to evaluate the apparent stress values and magnitude-dependent scaling in order to improve our knowledge of processes that control small and large earthquakes within this active region of Italy. Apparent stress is proportional to the ratio of radiated seismic energy and seismic moment, and as such, these stress parameters play an important role in hazard prediction as they have a strong effect on the observed and predicted ground shaking. We analyse 83 events of the sequence from 2016 August 24 to October 16, within a radius of 20 km from the main shock and with an Mw ranging between 5.97 and 2.72. Taking advantage of the averaging nature of coda waves, we analyse coda-envelope-based spectral ratios between neighbouring event pairs.We use equations proposed byWalter et al. to consider stable, low-frequency and high-frequency spectral ratio levelswhich provide measures of the corner frequency and apparent stress ratios of the events within the sequence. The results demonstrate non-self-similar behaviour within the sequence, suggesting a change in dynamics between the largest events and the smaller aftershocks. The apparent stress and corner frequency estimates are compared to those obtained by Malagnini and Munaf`o who utilized hundreds of direct S-wave spectral ratio measurements to obtain their results. Although our analysis is based only on 83 events, our results are in very good agreement, demonstrating once more that the use of coda waves is very stable and provides lower variance measures than those using direct waves. A comparison with recent Central Apennines source scaling models derived from various seismic sequences (1997–1998 Colfiorito, 2002 San Giuliano di Puglia, 2009 L’Aquila) shows that the Amatrice sequence source scaling in this study is well represented by the models proposed by Pacor et al. and Malagnini and Mayeda.
    Description: Published
    Description: 446-455
    Description: 3T. Sorgente sismica
    Description: JCR Journal
    Keywords: Coda waves; Earthquake dynamics; Earthquake source observations; Amatrice ; earthquake stress parameters
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
    Publication Date: 2022-05-26
    Description: Author Posting. © The Authors, 2019. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 218(3), (2019): 1822-1837, doi: 10.1093/gji/ggz253.
    Description: Joint inversion of multiple electromagnetic data sets, such as controlled source electromagnetic and magnetotelluric data, has the potential to significantly reduce uncertainty in the inverted electrical resistivity when the two data sets contain complementary information about the subsurface. However, evaluating quantitatively the model uncertainty reduction is made difficult by the fact that conventional inversion methods—using gradients and model regularization—typically produce just one model, with no associated estimate of model parameter uncertainty. Bayesian inverse methods can provide quantitative estimates of inverted model parameter uncertainty by generating an ensemble of models, sampled proportional to data fit. The resulting posterior distribution represents a combination of a priori assumptions about the model parameters and information contained in field data. Bayesian inversion is therefore able to quantify the impact of jointly inverting multiple data sets by using the statistical information contained in the posterior distribution. We illustrate, for synthetic data generated from a simple 1-D model, the shape of parameter space compatible with controlled source electromagnetic and magnetotelluric data, separately and jointly. We also demonstrate that when data sets contain complementary information about the model, the region of parameter space compatible with the joint data set is less than or equal to the intersection of the regions compatible with the individual data sets. We adapt a trans-dimensional Markov chain Monte Carlo algorithm for jointly inverting multiple electromagnetic data sets for 1-D earth models and apply it to surface-towed controlled source electromagnetic and magnetotelluric data collected offshore New Jersey, USA, to evaluate the extent of a low salinity aquifer within the continental shelf. Our inversion results identify a region of high resistivity of varying depth and thickness in the upper 500 m of the continental shelf, corroborating results from a previous study that used regularized, gradient-based inversion methods. We evaluate the joint model parameter uncertainty in comparison to the uncertainty obtained from the individual data sets and demonstrate quantitatively that joint inversion offers reduced uncertainty. In addition, we show how the Bayesian model ensemble can subsequently be used to derive uncertainty estimates of pore water salinity within the low salinity aquifer.
    Description: We gratefully acknowledge funding support from National Science Foundation grants 1458392 and 1459035. We thank the captain and crew of the R.V. Marcus G. Langseth for a successful cruise and the Marine EM Lab at Scripps Institution of Oceanography for providing the instrumentation. We also thank Chris Armerding, Marah Dahn, John Desanto, Jimmy Elsenbeck, Matt Folsom, Keiichi Ishizu, Jeff Pepin, Charlotte Wiman and Georgie Zelenak for participating in the cruise. We gratefully acknowledge Alberto Malinverno for the idea to use a Monte Carlo scheme to estimate the distribution of pore fluid salinity, and William Menke for many constructive conversations and suggestions.
    Keywords: Controlled source electromagnetics (CSEM) ; Joint inversion ; Magnetotellurics ; Statistical methods ; Marine electromagnetics ; Probability distributions
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2022-05-26
    Description: Author Posting. © The Authors, 2019. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 218(3), (2019): 2122-2135, doi: 10.1093/gji/ggz272.
    Description: We have conducted the first passive Ocean Bottom Seismograph (OBS) experiment near the Challenger Deep at the southernmost Mariana subduction zone by deploying and recovering an array of 6 broad-band OBSs during December 2016–June 2017. The obtained passive-source seismic records provide the first-ever near-field seismic observations in the southernmost Mariana subduction zone. We first correct clock errors of the OBS recordings based on both teleseismic waveforms and ambient noise cross-correlation. We then perform matched filter earthquake detection using 53 template events in the catalogue of the US Geological Survey and find 〉7000 local earthquakes during the 6-month OBS deployment period. Results of the two independent approaches show that the maximum clock drifting was ∼2 s on one instrument (OBS PA01), while the rest of OBS waveforms had negligible time drifting. After timing correction, we locate the detected earthquakes using a newly refined local velocity model that was derived from a companion active source experiment in the same region. In total, 2004 earthquakes are located with relatively high resolution. Furthermore, we calibrate the magnitudes of the detected earthquakes by measuring the relative amplitudes to their nearest relocated templates on all OBSs and acquire a high-resolution local earthquake catalogue. The magnitudes of earthquakes in our new catalogue range from 1.1 to 5.6. The earthquakes span over the Southwest Mariana rift, the megathrust interface, forearc and outer-rise regions. While most earthquakes are shallow, depths of the slab earthquakes increase from ∼100 to ∼240 km from west to east towards Guam. We also delineate the subducting interface from seismicity distribution and find an increasing trend in dip angles from west to east. The observed along-strike variation in slab dip angles and its downdip extents provide new constraints on geodynamic processes of the southernmost Mariana subduction zone.
    Description: We express our appreciation to the science parties and crew members of the R/V Shiyan 3 for deployment and collection of the OBS instruments during the Mariana expeditions. This study is supported by the Hong Kong Research Grant Council Grants (No. 14313816), Faculty of Science at CUHK, Chinese Academy of Sciences (No. Y4SL021001, QYZDY-SSW-DQC005, 133244KYSB20180029), the National Natural Science Foundation of China (No. 41890813, 91628301, 41676042, U1701641, 41576041, 91858207 and U1606401), the National Key R&D Program of China (2018YFC0309800 and 2018YFC0310100). Generic Mapping Tools (Wessel & Smith 1991) and PSSAC (developed by Prof Lupei Zhu) are used for data analysis and figure preparation in this study. Constructive comments from Dr Lidong Bie and two anonymous reviewers are helpful in improving the manuscript.
    Keywords: Seismicity and tectonics ; Dynamics: seismotectonics ; Subduction zone processes
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in ICES Journal of Marine Science 76(4), (2010): 781-786, doi:10.1093/icesjms/fsy194.
    Description: Whales are federally protected by the Marine Mammal Protection Act; endangered species, such as the North Atlantic right whale, receive additional protection under the Endangered Species Act. However, their regulations have failed to satisfy conservation and animal welfare concerns. From 1990 to 2011 the North Atlantic right whale (Eubalaena glacialis, NARW) population grew at a mean of 2.8% annually. However, population trends reversed since 2011; the species is in decline, with only ∼100 reproductively active females remaining. This failure is driven by vessel collisions and increasingly fatal and serious entanglement in fixed fishing gear, whose rope strength has increased substantially. Chronic entanglement, drag, and associated morbidity have been linked to poor fecundity. Genuine solutions involve designating areas to be avoided and speed restrictions for ships and removing fishing trap ropes from the water column. A trap fishing closure for NARW habitat in the Cape Cod Bay (U.S.) area has been in place seasonally since 2015. 2017 mortalities in Eastern Canada elicited substantive management changes whereby the 2018 presence of NARW in active trap fishing areas resulted in an effective closure. To avoid these costly closures, the traditional trap fishery model of rope end lines attached to surface marker buoys has to be modified so that traps are marked virtually, and retrieved with gear that does not remain in the water column except during trap retrieval. Consumer demand for genuinely whale-safe products will augment and encourage the necessary regulatory changes so that trap fisheries conserve target and nontarget species.
    Description: I thank Mark Baumgartner, Scott Kraus, Tim Werner, Amy Knowlton, Heather Pettis, Scott Landry, Stormy Mayo, Fred Penney, and Beth Casoni for discussions on this topic and Natalie Renier for drawing Figures 5 and 6. Funding was provided by the Woods Hole Oceanographic Institution Independent Research and Development Program.
    Description: 2020-01-10
    Keywords: end line ; entanglement ; large whale ; rope removal ; trap
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2019. This is the author's version of the work. It is posted here by permission of Oxford University Press for personal use, not for redistribution. The definitive version was published in Geophysical Journal International, 219(1), (2019): 464-478, doi:10.1093/gji/ggz315.
    Description: The electromagnetic (EM) field generated by ocean tidal flow is readily detectable in both satellite magnetic field data, and in ocean-bottom measurements of electric and magnetic fields. The availability of accurate charts of tidal currents, constrained by assimilation of modern satellite altimetry data, opens the possibility of using tidal EM fields as a source to image mantle electrical resistivity beneath the ocean basins, as highlighted by the recent success in defining the globally averaged lithosphere–asthenosphere boundary (LAB) with satellite data. In fact, seafloor EM data would be expected to provide better constraints on the structure of resistive oceanic lithosphere, since the toroidal magnetic mode, which can constrain resistive features, is a significant component of the tidal EM field within the ocean, but is absent above the surface (in particular in satellite data). Here we consider this issue in more detail, using a combination of simplified theoretical analysis and 1-D and 3-D numerical modelling to provide a thorough discussion of the sensitivity of satellite and seafloor data to subsurface electrical structure. As part of this effort, and as a step toward 3-D inversion of seafloor tidal data, we have developed a new flexible 3-D spherical-coordinate finite difference scheme for both global and regional scale modelling, with higher resolution models nested in larger scale solutions. We use the new 3-D model, together with Monte Carlo simulations of errors in tidal current estimates, to provide a quantitative assessment of errors in the computed tidal EM signal caused by uncertainty in the tidal source. Over the open ocean this component of error is below 0.01 nT in Bz at satellite height and 0.05 nT in Bx on the seafloor, well below typical signal levels. However, as coastlines are approached error levels can increase substantially. Both analytical and 3-D modelling demonstrate that the seafloor magnetic field is most sensitive to the lithospheric resistance (the product of resistivity and thickness), and is more weakly influenced (primarily in the phase) by resistivity of the underlying asthenosphere. Satellite data, which contain only the poloidal magnetic mode, are more sensitive to the conductive asthenosphere, but have little sensitivity to lithospheric resistance. For both seafloor and satellite data’s changes due to plausible variations in Earth parameters are well above error levels associated with source uncertainty, at least in the ocean interior. Although the 3-D modelling results are qualitatively consistent with theoretical analysis, the presence of coastlines and bathymetric variations generates a complex response, confirming that quantitative interpretation of ocean tidal EM fields will require a 3-D treatment. As an illustration of the nested 3-D scheme, seafloor data at five magnetic and seven electric stations in the northeastern Pacific (41○N, 165○W) are fit with trial-and-error forward modelling of a local domain. The simulation results indicate that the lithospheric resistance is roughly 7 × 108 Ωm2. The phase of the seafloor data in this region are inconsistent with a sharp transition between the resistive lithosphere and conductive asthenosphere.
    Description: This work has been supported by National Natural Science Foundation of China grants 41804072 and 41574104, and NSF grant EAR-1447109. Special thanks to Dr Benjamin Murphy who provided the conductivity-depth profile for 1-D earth model, Dr Min Ding who provided valuable discussion about the oceanic lithosphere and Dr Jeffery Love who provided comments on the stylistics of the manuscript.
    Keywords: Composition and structure of the mantle ; Pacific Ocean ; Electromagnetic theory ; Geomagnetic induction ; Satellite magnetics
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Aslan, C., Beckman, N. G., Rogers, H. S., Bronstein, J., Zurell, D., Hartig, F., Shea, K., Pejchar, L., Neubert, M., Poulsen, J., HilleRisLambers, J., Miriti, M., Loiselle, B., Effiom, E., Zambrano, J., Schupp, G., Pufal, G., Johnson, J., Bullock, J. M., Brodie, J., Bruna, E., Cantrell, R. S., Decker, R., Fricke, E., Gurski, K., Hastings, A., Kogan, O., Razafindratsima, O., Sandor, M., Schreiber, S., Snell, R., Strickland, C., & Zhou, Y. Employing plant functional groups to advance seed dispersal ecology and conservation. AoB Plants, 11(2), (2019):plz006, doi:10.1093/aobpla/plz006.
    Description: Seed dispersal enables plants to reach hospitable germination sites and escape natural enemies. Understanding when and how much seed dispersal matters to plant fitness is critical for understanding plant population and community dynamics. At the same time, the complexity of factors that determine if a seed will be successfully dispersed and subsequently develop into a reproductive plant is daunting. Quantifying all factors that may influence seed dispersal effectiveness for any potential seed-vector relationship would require an unrealistically large amount of time, materials and financial resources. On the other hand, being able to make dispersal predictions is critical for predicting whether single species and entire ecosystems will be resilient to global change. Building on current frameworks, we here posit that seed dispersal ecology should adopt plant functional groups as analytical units to reduce this complexity to manageable levels. Functional groups can be used to distinguish, for their constituent species, whether it matters (i) if seeds are dispersed, (ii) into what context they are dispersed and (iii) what vectors disperse them. To avoid overgeneralization, we propose that the utility of these functional groups may be assessed by generating predictions based on the groups and then testing those predictions against species-specific data. We suggest that data collection and analysis can then be guided by robust functional group definitions. Generalizing across similar species in this way could help us to better understand the population and community dynamics of plants and tackle the complexity of seed dispersal as well as its disruption.
    Description: Ideas for this manuscript initiated during the Seed Dispersal Workshop held in May 2016 at the Socio-Environmental Synthesis Center in Annapolis, MD and supported by the US National Science Foundation Grant DEB-1548194 to N.G.B. and the National Socio‐Environmental Synthesis Center under the US National Science Foundation Grant DBI‐1052875. D.Z. received funding from the Swiss National Science Foundation (SNF, grant: PZ00P3_168136/1) and from the German Science Foundation (DFG, grant: ZU 361/1- 1). Contributions by the authors C.A. led the development of the concepts, writing, and revising of the manuscript with input from N.G.B. and H.S.R. All authors contributed to the development of concepts and are listed in order of contribution and alphabetical order within each level of contribution.
    Keywords: dependency ; directed dispersal ; dispersal vectors ; generalization ; mutualism ; seed dispersal effectiveness
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Alexander, H., Johnson, L. K., & Brown, C. T.. Keeping it light: (re)analyzing community-wide datasets without major infrastructure. Gigascience, 8(2),(2019): giy159, doi:10.1093/gigascience/giy159.
    Description: DNA sequencing technology has revolutionized the field of biology, shifting biology from a data-limited to data-rich state. Central to the interpretation of sequencing data are the computational tools and approaches that convert raw data into biologically meaningful information. Both the tools and the generation of data are actively evolving, yet the practice of re-analysis of previously generated data with new tools is not commonplace. Re-analysis of existing data provides an affordable means of generating new information and will likely become more routine within biology, yet necessitates a new set of considerations for best practices and resource development. Here, we discuss several practices that we believe to be broadly applicable when re-analyzing data, especially when done by small research groups.
    Description: Funding was provided by the Gordon and Betty Moore Foundation (award GBMF4551 to C.T.B.).
    Keywords: reproducibility ; data reuse ; open data
    Repository Name: Woods Hole Open Access Server
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  • 11
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    Oxford University Press
    Publication Date: 2022-05-26
    Description: Author Posting. © The Authors, 2019. This article is posted here by permission of The Royal Astronomical Society for personal use, not for redistribution. The definitive version was published in Geophysical Journal International 218(3), (2019): 2165-2178, doi: 10.1093/gji/ggz280.
    Description: A multitaper estimator is proposed that accommodates time-series containing gaps without using any form of interpolation. In contrast with prior missing-data multitaper estimators that force standard Slepian sequences to be zero at gaps, the proposed missing-data Slepian sequences are defined only where data are present. The missing-data Slepian sequences are frequency independent, as are the eigenvalues that define the energy concentration within the resolution bandwidth, when the process bandwidth is [−1/2,1/2) for unit sampling and the sampling scheme comprises integer multiples of unity. As a consequence, one need only compute the ensuing missing-data Slepian sequences for a given sampling scheme once, and then the spectrum at an arbitrary set of frequencies can be computed using them. It is also shown that the resulting missing-data multitaper estimator can incorporate all of the optimality features (i.e. adaptive-weighting, F-test and reshaping) of the standard multitaper estimator, and can be applied to bivariate or multivariate situations in similar ways. Performance of the missing-data multitaper estimator is illustrated using length of day, seafloor pressure and Nile River low stand time-series.
    Description: The length of day utilized in Section 3 are available from http://hpiers.obspm.fr. The pressure data used in Section 4 are available from https://doi.org/10.1029/2018JC014586. A Matlab function MDmwps.m to compute missing-data power spectra is available from the Mathworks file exchange website. The author thanks Jeff Park and editor F.J. Simons for thorough reviews. This work was supported by an Internal Research and Development award at WHOI, and by the Walter A. and Hope Noyes Smith Chair for Excellence in Oceanography.
    Keywords: Fourier analysis ; Numerical approximations and analysis ; Statistical methods ; Time-series analysis
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  • 12
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, L. K., Alexander, H., & Brown, C. T. Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes. Gigascience, 8(4), (2019): giy158, doi: 10.1093/gigascience/giy158.
    Description: Background: De novo transcriptome assemblies are required prior to analyzing RNA sequencing data from a species without an existing reference genome or transcriptome. Despite the prevalence of transcriptomic studies, the effects of using different workflows, or “pipelines,” on the resulting assemblies are poorly understood. Here, a pipeline was programmatically automated and used to assemble and annotate raw transcriptomic short-read data collected as part of the Marine Microbial Eukaryotic Transcriptome Sequencing Project. The resulting transcriptome assemblies were evaluated and compared against assemblies that were previously generated with a different pipeline developed by the National Center for Genome Research. Results: New transcriptome assemblies contained the majority of previous contigs as well as new content. On average, 7.8% of the annotated contigs in the new assemblies were novel gene names not found in the previous assemblies. Taxonomic trends were observed in the assembly metrics. Assemblies from the Dinoflagellata showed a higher number of contigs and unique k-mers than transcriptomes from other phyla, while assemblies from Ciliophora had a lower percentage of open reading frames compared to other phyla. Conclusions: Given current bioinformatics approaches, there is no single “best” reference transcriptome for a particular set of raw data. As the optimum transcriptome is a moving target, improving (or not) with new tools and approaches, automated and programmable pipelines are invaluable for managing the computationally intensive tasks required for re-processing large sets of samples with revised pipelines and ensuring a common evaluation workflow is applied to all samples. Thus, re-assembling existing data with new tools using automated and programmable pipelines may yield more accurate identification of taxon-specific trends across samples in addition to novel and useful products for the community.
    Description: Funding was provided by the Gordon and Betty Moore Foundation under award number GBMF4551 to C.T.B. Jetstream cloud platform was used with XSEDE allocation TG-BIO160028 [66, 67].
    Keywords: marine microbial eukaryote ; transcriptome assembly ; automated pipeline ; re-analysis
    Repository Name: Woods Hole Open Access Server
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  • 13
    Publication Date: 2019
    Description: 〈span〉〈div〉Summary〈/div〉The investigation of using a novel radial basis function-based meshfree method for forward modelling magnetotelluric data is presented. The meshfree method, which can be termed radial basis function-based finite difference (RBF-FD), uses only a cloud of unconnected points to obtain the numerical solution throughout the computational domain. Unlike mesh-based numerical methods (for example, grid-based finite difference, finite volume and finite element), the meshfree method has the unique feature that the discretization of the conductivity model can be decoupled from the discretization used for numerical computation, thus avoiding traditional expensive mesh generation and allowing complicated geometries of the model be easily represented. To accelerate the computation, unstructured point discretization with local refinements are employed. Maxwell’s equations in the frequency domain are re-formulated using $\mathbf {A}$-ψ potentials in conjuction with the Coulomb gauge condition, and are solved numerically with a direct solver to obtain magnetotelluric responses. A major obstacle in applying common meshfree methods in modelling geophysical electromagnetic data is that they are incapable of reproducing discontinuous fields such as the discontinuous electric field over conductivity jumps, causing spurious solutions. The occurrence of spurious, or non-physical, solutions when applying standard meshfree methods is removed here by proposing a novel mixed scheme of the RBF-FD and a Galerkin-type weak-form treatment in discretizing the equations. The RBF-FD is applied to the points in uniform conductivity regions, whereas the weak-form treatment is introduced to points located on the interfaces separating different homogeneous conductivity regions. The effectiveness of the proposed meshfree method is validated with two numerical examples of modelling the magnetotelluric responses over three-dimensional conductivity models.〈/span〉
    Print ISSN: 2051-1965
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 14
    Publication Date: 2019
    Description: 〈p〉The compatibility of free boronic acid building blocks in multicomponent reactions to readily create large libraries of diverse and complex small molecules was investigated. Traditionally, boronic acid synthesis is sequential, synthetically demanding, and time-consuming, which leads to high target synthesis times and low coverage of the boronic acid chemical space. We have performed the synthesis of large libraries of boronic acid derivatives based on multiple chemistries and building blocks using acoustic dispensing technology. The synthesis was performed on a nanomole scale with high synthesis success rates. The discovery of a protease inhibitor underscores the usefulness of the approach. Our acoustic dispensing–enabled chemistry paves the way to highly accelerated synthesis and miniaturized reaction scouting, allowing access to unprecedented boronic acid libraries.〈/p〉
    Electronic ISSN: 2375-2548
    Topics: Natural Sciences in General
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  • 15
    Publication Date: 2019
    Description: 〈p〉Humans are adept in simultaneously following multiple goals, but the neural mechanisms for maintaining specific goals and distinguishing them from other goals are incompletely understood. For short time scales, working memory studies suggest that multiple mental contents are maintained by theta-coupled reactivation, but evidence for similar mechanisms during complex behaviors such as goal-directed navigation is scarce. We examined intracranial electroencephalography recordings of epilepsy patients performing an object-location memory task in a virtual environment. We report that large-scale electrophysiological representations of objects that cue for specific goal locations are dynamically reactivated during goal-directed navigation. Reactivation of different cue representations occurred at stimulus-specific hippocampal theta phases. Locking to more distinct theta phases predicted better memory performance, identifying hippocampal theta phase coding as a mechanism for separating competing goals. Our findings suggest shared neural mechanisms between working memory and goal-directed navigation and provide new insights into the functions of the hippocampal theta rhythm.〈/p〉
    Electronic ISSN: 2375-2548
    Topics: Natural Sciences in General
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  • 16
    Publication Date: 2019
    Description: 〈p〉Voters may be unable to hold politicians to account if they lack basic information about their representatives’ performance. Civil society groups and international donors therefore advocate using voter information campaigns to improve democratic accountability. Yet, are these campaigns effective? Limited replication, measurement heterogeneity, and publication biases may undermine the reliability of published research. We implemented a new approach to cumulative learning, coordinating the design of seven randomized controlled trials to be fielded in six countries by independent research teams. Uncommon for multisite trials in the social sciences, we jointly preregistered a meta-analysis of results in advance of seeing the data. We find no evidence overall that typical, nonpartisan voter information campaigns shape voter behavior, although exploratory and subgroup analyses suggest conditions under which informational campaigns could be more effective. Such null estimated effects are too seldom published, yet they can be critical for scientific progress and cumulative, policy-relevant learning.〈/p〉
    Electronic ISSN: 2375-2548
    Topics: Natural Sciences in General
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  • 17
    Publication Date: 2019
    Description: 〈p〉The canonical view is that touch is signaled by fast-conducting, thickly myelinated afferents, whereas pain is signaled by slow-conducting, thinly myelinated ("fast" pain) or unmyelinated ("slow" pain) afferents. While other mammals have thickly myelinated afferents signaling pain (ultrafast nociceptors), these have not been demonstrated in humans. Here, we performed single-unit axonal recordings (microneurography) from cutaneous mechanoreceptive afferents in healthy participants. We identified A-fiber high-threshold mechanoreceptors (A-HTMRs) that were insensitive to gentle touch, encoded noxious skin indentations, and displayed conduction velocities similar to A-fiber low-threshold mechanoreceptors. Intraneural electrical stimulation of single ultrafast A-HTMRs evoked painful percepts. Testing in patients with selective deafferentation revealed impaired pain judgments to graded mechanical stimuli only when thickly myelinated fibers were absent. This function was preserved in patients with a loss-of-function mutation in mechanotransduction channel PIEZO2. These findings demonstrate that human mechanical pain does not require PIEZO2 and can be signaled by fast-conducting, thickly myelinated afferents.〈/p〉
    Electronic ISSN: 2375-2548
    Topics: Natural Sciences in General
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  • 18
    Publication Date: 2019
    Description: 〈p〉Mineralization is the most fundamental process in vertebrates. It is predominantly mediated by osteoblasts, which secrete mineral precursors, most likely through matrix vesicles (MVs). These vesicular structures are calcium and phosphate rich and contain organic material such as acidic proteins. However, it remains largely unknown how intracellular MVs are transported and secreted. Here, we use scanning electron-assisted dielectric microscopy and super-resolution microscopy for assessing live osteoblasts in mineralizing conditions at a nanolevel resolution. We found that the calcium-containing vesicles were multivesicular bodies containing MVs. They were transported via lysosome and secreted by exocytosis. Thus, we present proof that the lysosome transports amorphous calcium phosphate within mineralizing osteoblasts.〈/p〉
    Electronic ISSN: 2375-2548
    Topics: Natural Sciences in General
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  • 19
    Publication Date: 2019
    Description: 〈p〉Over 140 Mha of restoration commitments have been pledged across the global tropics, yet guidance is needed to identify those landscapes where implementation is likely to provide the greatest potential benefits and cost-effective outcomes. By overlaying seven recent, peer-reviewed spatial datasets as proxies for socioenvironmental benefits and feasibility of restoration, we identified restoration opportunities (areas with higher potential return of benefits and feasibility) in lowland tropical rainforest landscapes. We found restoration opportunities throughout the tropics. Areas scoring in the top 10% (i.e., restoration hotspots) are located largely within conservation hotspots (88%) and in countries committed to the Bonn Challenge (73%), a global effort to restore 350 Mha by 2030. However, restoration hotspots represented only a small portion (19.1%) of the Key Biodiversity Area network. Concentrating restoration investments in landscapes with high benefits and feasibility would maximize the potential to mitigate anthropogenic impacts and improve human well-being.〈/p〉
    Electronic ISSN: 2375-2548
    Topics: Natural Sciences in General
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  • 20
    Publication Date: 2019
    Description: 〈span〉〈div〉Summary〈/div〉Receiver functions are sensitive to sharp seismic velocity variations with depth and are commonly used to constrain crustal thickness. The H-κ stacking method of Zhu and Kanamori (〈span〉2000〈/span〉) is often employed to constrain both the crustal thickness (H) and ${V_P}$/${V_S}$ ratio ($\kappa $) beneath a seismic station using P-to-s converted waves (Ps). However, traditional H-κ stacks require an assumption of average crustal velocity (usually ${V_P}$). Additionally, large amplitude reverberations from low velocity shallow layers, such as sedimentary basins, can overprint sought-after crustal signals, rendering traditional H-$\ \kappa $ stacking uninterpretable. We overcome these difficulties in two ways. When S-wave reverberations from sediment are present, they are removed by applying a resonance removal filter allowing crustal signals to be clarified and interpreted. We also combine complementary Ps receiver functions, Sp receiver functions, and the post-critical P wave reflection from the Moho (SP〈sub〉m〈/sub〉p) to remove the dependence on an assumed average crustal ${V_P}$. By correcting for sediment and combining multiple data sets, the crustal thickness, average crustal P-wave velocity, and crustal ${V_P}$/${V_S}$ ratio is constrained in geologic regions where traditional H-$\ \kappa $ stacking fails, without making an initial P-wave velocity assumption or suffering from contamination by sedimentary reverberations.〈/span〉
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  • 21
    Publication Date: 2019
    Description: 〈p〉In engineering, the "softness" of an object, as measured by an indenter, manifests as two measurable parameters: (i) indentation depth and (ii) contact area. For humans, softness is not well defined, although it is believed that perception depends on the same two parameters. Decoupling their relative contributions, however, has not been straightforward because most bulk—"off-the-shelf"—materials exhibit the same ratio between the indentation depth and contact area. Here, we decoupled indentation depth and contact area by fabricating elastomeric slabs with precise thicknesses and microstructured surfaces. Human subject experiments using two-alternative forced-choice and magnitude estimation tests showed that the indentation depth and contact area contributed independently to perceived softness. We found an explicit relationship between the perceived softness of an object and its geometric properties. Using this approach, it is possible to design objects for human interaction with a desired level of perceived softness.〈/p〉
    Electronic ISSN: 2375-2548
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  • 22
    Publication Date: 2019
    Description: 〈p〉The electronic energy and dynamics of solvated electrons, the simplest yet elusive chemical species, is of interest in chemistry, physics, and biology. Here, we present the electron binding energy distributions of solvated electrons in liquid water, methanol, and ethanol accurately measured using extreme ultraviolet (EUV) photoelectron spectroscopy of liquids with a single-order high harmonic. The distributions are Gaussian in all cases. Using the EUV and UV photoelectron spectra of solvated electrons, we succeeded in retrieving sharp electron kinetic energy distributions from the spectra broadened and energy shifted by inelastic scattering in liquids, overcoming an obstacle in ultrafast UV photoelectron spectroscopy of liquids. The method is demonstrated for the benchmark systems of charge transfer to solvent reaction and ultrafast internal conversion of hydrated electron from the first excited state.〈/p〉
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  • 23
    Publication Date: 2019
    Description: 〈p〉Topological surface states (TSSs) in a topological insulator are expected to be able to produce a spin-orbit torque that can switch a neighboring ferromagnet. This effect may be absent if the ferromagnet is conductive because it can completely suppress the TSSs, but it should be present if the ferromagnet is insulating. This study reports TSS-induced switching in a bilayer consisting of a topological insulator Bi〈sub〉2〈/sub〉Se〈sub〉3〈/sub〉 and an insulating ferromagnet BaFe〈sub〉12〈/sub〉O〈sub〉19〈/sub〉. A charge current in Bi〈sub〉2〈/sub〉Se〈sub〉3〈/sub〉 can switch the magnetization in BaFe〈sub〉12〈/sub〉O〈sub〉19〈/sub〉 up and down. When the magnetization is switched by a field, a current in Bi〈sub〉2〈/sub〉Se〈sub〉3〈/sub〉 can reduce the switching field by ~4000 Oe. The switching efficiency at 3 K is 300 times higher than at room temperature; it is ~30 times higher than in Pt/BaFe〈sub〉12〈/sub〉O〈sub〉19〈/sub〉. These strong effects originate from the presence of more pronounced TSSs at low temperatures due to enhanced surface conductivity and reduced bulk conductivity.〈/p〉
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  • 24
    Publication Date: 2019
    Description: 〈p〉The in situ two-dimensional (2D) and 3D imaging of the chemical speciation of organic fossils is an unsolved problem in paleontology and cultural heritage. Here, we use x-ray Raman scattering (XRS)–based imaging at the carbon K-edge to form 2D and 3D images of the carbon chemistry in two exceptionally preserved specimens, a fossil plant dating back from the Carboniferous and an ancient insect entrapped in 53-million-year-old amber. The 2D XRS imaging of the plant fossil reveals a homogeneous chemical composition with micrometric "pockets" of preservation, likely inherited from its geological history. The 3D XRS imaging of the insect cuticle displays an exceptionally well preserved remaining chemical signature typical of polysaccharides such as chitin around a largely hollowed-out inclusion. Our results open up new perspectives for in situ chemical speciation imaging of fossilized organic materials, with the potential to enhance our understanding of organic specimens and their paleobiology.〈/p〉
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  • 25
    Publication Date: 2019
    Description: 〈p〉The regeneration of tooth enamel, the hardest biological tissue, remains a considerable challenge because its complicated and well-aligned apatite structure has not been duplicated artificially. We herein reveal that a rationally designed material composed of calcium phosphate ion clusters can be used to produce a precursor layer to induce the epitaxial crystal growth of enamel apatite, which mimics the biomineralization crystalline-amorphous frontier of hard tissue development in nature. After repair, the damaged enamel can be recovered completely because its hierarchical structure and mechanical properties are identical to those of natural enamel. The suggested phase transformation–based epitaxial growth follows a promising strategy for enamel regeneration and, more generally, for biomimetic reproduction of materials with complicated structure.〈/p〉
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  • 26
    Publication Date: 2019
    Description: 〈span〉In the original version of this article the author, Adrian Flores Orozco, was incorrectly listed. This has now been corrected and the publisher apologises for the error.〈/span〉
    Print ISSN: 2051-1965
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  • 27
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉The evolution of the Philippine Sea Plate (PSP) since Jurassic is one of the key issues in the dynamics of lithosphere and mantle. The related studies benefited mostly from seismic tomography which provides velocity structures in the upper mantle. However, the upper-mantle structure is not well resolved compared to the continental areas due to the lack of seismic data in the Philippine Sea. We employ a 3-D gravity inversion constrained by an initial model based on the 〈span〉S〈/span〉-wave tomography (SL2013sv; Schaeffer & Lebedev 2013) to image the density structure of the upper mantle of the PSP and adjacent region. The resulting model shows a three-layer pattern of vertical high-low-high density variation in the upper mantle under the PSP. The thin high-density layer evidences for strong oceanic lithosphere in the West Philippine Sea. The relatively low dense mantle located below the PSP possibly originates from the asthenosphere. The PSP differs from the Pacific and the Indian-Australian plates in the whole depth range, while its structure is similar to the eastern Eurasian and Sunda plates. In the depth range, 200–300 km, the relative high-density zone beneath PSP extends to the Sunda Plate and to the eastern Eurasian Plate. We further estimated the conversion factor of our density model and the velocity model (SL2013sv; Schaeffer & Lebedev 2013) in order to locate the changes of compositional effects in the upper mantle. The negative conversion factor indicates that the compositional changes primarily affect the density anomalies beneath the PSP. We, therefore, describe the layered density structures as ‘sandwich’ pattern, which is unique and different from adjacent regions.〈/span〉
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  • 28
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉Low-velocity layers within the crust can indicate the presence of melt and lithologic differences with implications for crustal composition and formation. Seismic wave conversions and reverberations across the base of the crust or intracrustal discontinuities, analysed using the receiver function method, can be used to constrain crustal layering. This is commonly accomplished by inverting receiver functions jointly with surface wave dispersion. Recently, the proliferation of model-space search approaches has made this technique a workhorse of crustal seismology. We show that reverberations from shallow layers such as sedimentary basins produce spurious low-velocity zones when inverted for crustal structure with surface wave data of insufficiently high frequency. Therefore, reports of such layers in the literature based on inversions using receiver function data should be re-evaluated. We demonstrate that a simple resonance-removal filter can suppress these effects and yield reliable estimates of crustal structure, and advocate for its use in receiver-function based inversions.〈/span〉
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  • 29
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉We present a numerical method for simulating both single-event dynamic ruptures and earthquake sequences with full inertial effects in antiplane shear with rate-and-state fault friction. We use the second-order form of the wave equation, expressed in terms of displacements, discretized with high-order-accurate finite difference operators in space. Advantages of this method over other methods include reduced computational memory usage and reduced spurious high frequency oscillations. Our method handles complex geometries, such as non-planar fault interfaces and free surface topography. Boundary conditions are imposed weakly using penalties. We prove time stability by constructing discrete energy estimates. We present numerical experiments demonstrating the stability and convergence of the method, and showcasing applications of the method, including the transition in rupture style from crack-like ruptures to slip pulses for strongly rate-weakening friction and the simulation of earthquake sequences in a viscoelastic solid with a fully dynamic coseismic phase.〈/span〉
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  • 30
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    Publication Date: 2019
    Description: 〈sec〉〈st〉Electron energy bands of crystalline solids generically exhibit degeneracies called band-structure nodes. Here, we introduce non-Abelian topological charges that characterize line nodes inside the momentum space of〈/st〉〈p〉〈b〉-symmetric crystalline metals with weak spin-orbit coupling. We show that these are quaternion charges, similar to those describing disclinations in biaxial nematics. Starting from two-band considerations, we develop the complete many-band description of nodes in the presence of 〈/b〉 〈b〉and mirror symmetries, which allows us to investigate the topological stability of nodal chains in metals. The non-Abelian charges put strict constraints on the possible nodal line configurations. Our analysis goes beyond the standard approach to band topology, and implies the existence of 1D topological phases not present in existing classifications.〈/b〉〈/p〉〈/sec〉
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  • 31
    Publication Date: 2019
    Description: 〈span〉〈div〉Summary〈/div〉We derive a theoretical relationship between the cross correlation of ambient Rayleigh waves (seismic ambient noise) and the attenuation parameter α associated with Rayleigh-wave propagation. In particular, we derive a mathematical expression for the multiplicative factor relating normalized cross correlation to the Rayleigh-wave Green’s function. Based on this expression, we formulate an inverse problem to determine α from cross correlations of recorded ambient signal. We conduct a preliminary application of our algorithm to a relatively small instrument array, conveniently deployed on an island. In our setup, the mentioned multiplicative factor has values of about 2.5 to 3, which, if neglected, could result in a significant underestimate of α. We find that our inferred values of α are reasonable, in comparison with independently obtained estimates found in the literature. Allowing α to vary with respect to frequency results in a reduction of misfit between observed and predicted cross correlations.〈/span〉
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  • 42
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  • 43
    Publication Date: 2019
    Description: 〈p〉Investigating slow earthquake activity in subduction zones provides insight into the slip behavior of megathrusts, which can provide important clues about the rupture extent of future great earthquakes. Using the S-net ocean-bottom seismograph network along the Japan Trench, we mapped a detailed distribution of tectonic tremors, which coincided with very-low-frequency earthquakes and a slow slip event. Compiling these and other related observations, including repeating earthquakes and earthquake swarms, we found that the slow earthquake distribution is complementary to the Tohoku-Oki earthquake rupture. We used our observations to divide the megathrust in the Japan Trench into three along-strike segments characterized by different slip behaviors. We found that the rupture of the Tohoku-Oki earthquake, which nucleated in the central segment, was terminated by the two adjacent segments.〈/p〉
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  • 44
    Publication Date: 2019
    Description: 〈p〉Stimuli-responsive materials activated by biological signals play an increasingly important role in biotechnology applications. We exploit the programmability of CRISPR-associated nucleases to actuate hydrogels containing DNA as a structural element or as an anchor for pendant groups. After activation by guide RNA–defined inputs, Cas12a cleaves DNA in the gels, thereby converting biological information into changes in material properties. We report four applications: (i) branched poly(ethylene glycol) hydrogels releasing DNA-anchored compounds, (ii) degradable polyacrylamide-DNA hydrogels encapsulating nanoparticles and live cells, (iii) conductive carbon-black–DNA hydrogels acting as degradable electrical fuses, and (iv) a polyacrylamide-DNA hydrogel operating as a fluidic valve with an electrical readout for remote signaling. These materials allow for a range of in vitro applications in tissue engineering, bioelectronics, and diagnostics.〈/p〉
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  • 45
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  • 46
    Publication Date: 2019
    Description: 〈p〉Understanding genomic variation and population structure of 〈i〉Plasmodium falciparum〈/i〉 across Africa is necessary to sustain progress toward malaria elimination. Genome clustering of 2263 〈i〉P. falciparum〈/i〉 isolates from 24 malaria-endemic settings in 15 African countries identified major western, central, and eastern ancestries, plus a highly divergent Ethiopian population. Ancestry aligned to these regional blocs, overlapping with both the parasite’s origin and with historical human migration. The parasite populations are interbred and shared genomic haplotypes, especially across drug resistance loci, which showed the strongest recent identity-by-descent between populations. A recent signature of selection on chromosome 12 with candidate resistance loci against artemisinin derivatives was evident in Ghana and Malawi. Such selection and the emerging substructure may affect treatment-based intervention strategies against 〈i〉P. falciparum〈/i〉 malaria.〈/p〉
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  • 49
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉Global phases, viz. seismic phases that travel through the Earth’s core, can be used to locally image the crust by means of seismic interferometry. This method is known as Global Phase Seismic Interferometry (GloPSI). Traditionally, GloPSI retrieves low-frequency information (up to 1 Hz). Recent studies, however, suggest that there is high-frequency signal present in the coda of strong, distant earthquakes. This research quantifies the potential of these high-frequency signals, by analysing recordings of a multitude of high-magnitude earthquakes (≥6.4 〈span〉M〈/span〉〈sub〉w〈/sub〉) and their coda on a selection of permanent USArray stations. Nearly half of the 〈span〉P, PKP〈/span〉 and PKIKP phases are recorded with a signal-to-noise ratio of at least 5 dB at 3 Hz. To assess the viability of using the high-frequency signal, the second half of the paper highlights two case studies. First, a known sedimentary structure is imaged in Malargüe, Argentina. Secondly, the method is used to reveal the structure of the Midcontinent Rift below the SPREE array in Minnesota, USA. Both studies demonstrate that structural information of the shallow crust (≤5 km) below the arrays can be retrieved. In particular, the interpreted thickness of the sedimentary layer below the Malargüe array is in agreement with earlier studies in the same area. Being able to use global phases and direct 〈span〉P〈/span〉-phases with large epicentral distances (〉80°) to recover the Earth’s sedimentary structure suggests that GloPSI can be applied in an industrial context.〈/span〉
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  • 50
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉The localization of passive seismic sources in form of microseismic tremors as well as large-scale earthquakes is a key issue in seismology. While most previous studies are assuming fairly good knowledge of the underlying velocity model, we propose an automatic spatial localization and joint velocity model building scheme that is independent of detailed 〈span〉a priori〈/span〉 information. The first step is a coherence analysis, estimating so-called wavefront attributes to locally describe the wavefield in terms of slopes and curvatures. In a similar fashion, we also obtain an initial guess of the source excitation times of the recorded events. The wavefront attributes constitute the input for wavefront tomography which represents the next step of the workflow and allows for a refinement of the previously evaluated source excitation times while simultaneously approximating the velocity distribution. In a last step, we use the final estimate of the velocity distribution and compute the respective image function by reverse time modelling to gain the source locations. This paper introduces the theoretical concept of our proposed approach for the general 3-D case. We analyse the feasibility of our strategy and the influences of different acquisition settings by means of a synthetic 2-D data example. In a final 3-D field data example we use the workflow to localize a deep earthquake without relying on a given velocity model. The approach can deal with high levels of noise and low signal amplitudes, respectively, as well as sparse geophone sampling. The workflow generally delivers good approximations of the long-wavelength velocity variations along with accurate source locations.〈/span〉
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  • 51
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉The 2017 July 20, 〈span〉M〈/span〉〈sub〉w〈/sub〉6.6 Bodrum–Kos earthquake occurred in the Gulf of Gökova in the SE Aegean, a region characterized by N–S extension in the backarc of the easternmost Hellenic Trench. The dip direction of the fault that ruptured during the earthquake has been a matter of controversy where both north- and south-dipping fault planes were used to model the coseismic slip in previous studies. Here, we use seismic (seismicity, main shock modelling, aftershock relocations and aftershock mechanisms using regional body and surface waves), geodetic (GPS, InSAR) and structural observations to estimate the location, and the dip direction of the fault that ruptured during the 2017 earthquake, and the relationship of this event to regional tectonics. We consider both dip directions and systematically search for the best-fitting locations for the north- and south-dipping fault planes. Comparing the best-fitting planes for both dip directions in terms of their misfit to the geodetic data, proximity to the hypocenter location and Coulomb stress changes at the aftershock locations, we conclude that the 2017 earthquake ruptured a north-dipping fault. We find that the earthquake occurred on a 20–25 km long, ∼E–W striking, 40° north-dipping, pure normal fault with slip primarily confined between 3 and 15 km depth, and the largest slip exceeding 2 m between depths of 4 and 10 km. The coseismic fault, not mapped previously, projects to the surface within the western Gulf, and partly serves both to widen the Gulf and separate Kos Island from the Bodrum Peninsula of SW Anatolia. The coseismic fault may be an extension of a mapped, north-dipping normal fault along the south side of the Gulf of Gökova. While all of the larger aftershocks are consistent with N–S extension, their spatially dispersed pattern attests to the high degree of crustal fracturing within the basin, due to rapid trenchward extension and anticlockwise rotation within the southeastern Aegean.〈/span〉
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  • 52
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉The harmonic electromagnetic noise produced by anthropic electrical structures is a critical component of the global noise affecting geophysical signals and increasing data uncertainty. It is composed of a series of harmonic signals whose frequencies are multiple integers of the fundamental frequency specific to the electrical noise source. To date, most model-based noise removal strategies assume that the fundamental frequency constraining the harmonic noise is single and constant over the duration of the geophysical record. In this paper, we demonstrate that classical harmonic processing methods lose efficacy when these assumptions are not valid. We present several surface nuclear magnetic resonance field data sets, which testify the increasing probability of recording the harmonic noise with such multiple or unstable frequency content. For each case (multiple frequencies or unstable frequency) we propose new processing strategies, namely, the 〈span〉2-D grid-search〈/span〉 and the 〈span〉segmentation〈/span〉 approach, respectively, which efficiently manage to remove the harmonic noise in these difficult conditions. In the process, we also apply a fast frequency estimator called the Nyman, Gaiser and Saucier estimation method, which shows equivalent performance as classical estimators while allowing a reduction of the computing time by a factor of 2.5.〈/span〉
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  • 53
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉Combinatorial methods are used to determine the spatial distribution of earthquake magnitudes on a fault whose slip rate varies along strike. Input to the problem is a finite sample of earthquake magnitudes that span 5 kyr drawn from a truncated Pareto distribution. The primary constraints to the problem are maximum and minimum values around the target slip-rate function indicating where feasible solutions can occur. Two methods are used to determine the spatial distribution of earthquakes: integer programming and the greedy-sequential algorithm. For the integer-programming method, the binary decision vector includes all possible locations along the fault where each earthquake can occur. Once a set of solutions that satisfy the constraints is found, the cumulative slip misfit on the fault is globally minimized relative to the target slip-rate function. The greedy algorithm sequentially places earthquakes to locally optimize slip accumulation. As a case study, we calculate how earthquakes are distributed along the megathrust of the Nankai subduction zone, in which the slip rate varies significantly along strike. For both methods, the spatial distribution of magnitudes depends on slip rate, except for the largest magnitude earthquakes that span multiple sections of the fault. The greedy-sequential algorithm, previously applied to this fault (Parsons et al., 2012), tends to produce smoother spatial distributions and fewer lower magnitude earthquakes in the low slip-rate section of the fault compared to the integer-programming method. Differences in results from the two methods relate to how much emphasis is placed on minimizing the misfit to the target slip rate (integer programming) compared to finding a solution within the slip-rate constraints (greedy sequential). Specifics of the spatial distribution of magnitudes also depend on the shape of the target slip-rate function: that is, stepped at the section boundaries versus a smooth function. This study isolates the effects of slip-rate variation along a single fault in determining the spatial distribution of earthquake magnitudes, helping to better interpret results from more complex, interconnected fault systems.〈/span〉
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  • 54
    Publication Date: 2019
    Description: 〈p〉In insects, rapidly evolving primary sex-determining signals are transduced by a conserved regulatory module controlling sexual differentiation. In the agricultural pest 〈i〉Ceratitis capitata〈/i〉 (Mediterranean fruit fly, Medfly) we identified a Y-linked gene, 〈i〉Maleness-on the-Y〈/i〉 (〈i〉MoY〈/i〉), encoding a small protein that is necessary and sufficient for male development. Silencing or disruption of 〈i〉MoY〈/i〉 in XY embryos causes feminization whereas overexpression of 〈i〉MoY〈/i〉 in XX embryos induces masculinization. Crosses between transformed XY females and XX males give rise to males and females, indicating that a Y chromosome can be transmitted by XY females. 〈i〉MoY〈/i〉 is Y-linked and functionally conserved in other species of the Tephritidae family, highlighting its potential to serve as a tool for developing more effective control strategies against these major agricultural insect pests.〈/p〉
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  • 55
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉The southcentral Hikurangi subduction margin (North Island, New Zealand) has a wide, low-taper accretionary wedge that is frontally accreting a 〉3-km-thick layer of sediments, with deformation currently focused near the toe of the wedge. We use a geological model based on a depth-converted seismic section, together with physically realistic parameters for fluid pressure, and sediment and décollement friction based on laboratory experiments, to investigate the present-day force balance in the wedge. Numerical models are used to establish the range of physical parameters compatible with the present-day wedge geometry and mechanics. Our analysis shows that the accretionary wedge stability and taper angle require either high to moderate fluid pressure on the plate interface, and/or weak frictional strength along the décollement. The décollement beneath the outer wedge requires a relatively weaker effective strength than beneath the inner (consolidated) wedge. Increasing density and cohesion with depth make it easier to attain a stable taper within the inner wedge, while anything that weakens the wedge—such as high fluid pressures and weak faults—make it harder. Our results allow a near-hydrostatic wedge fluid pressure, sublithostatic fluid overpressure at the subduction interface, and friction coefficients compatible with measurements from laboratory experiments on weak clay minerals.〈/span〉
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  • 56
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉We present a new methodology to compute the gravitational fields generated by tesseroids (spherical prisms) whose density varies with depth according to an arbitrary continuous function. It approximates the gravitational fields through the Gauss–Legendre Quadrature along with two discretization algorithms that automatically control its accuracy by adaptively dividing the tesseroid into smaller ones. The first one is a preexisting 2-D adaptive discretization algorithm that reduces the errors due to the distance between the tesseroid and the computation point. The second is a new density-based discretization algorithm that decreases the errors introduced by the variation of the density function with depth. The amount of divisions made by each algorithm is indirectly controlled by two parameters: the distance-size ratio and the delta ratio. We have obtained analytical solutions for a spherical shell with radially variable density and compared them to the results of the numerical model for linear, exponential, and sinusoidal density functions. The heavily oscillating density functions are intended only to test the algorithm to its limits and not to emulate a real world case. These comparisons allowed us to obtain optimal values for the distance-size and delta ratios that yield an accuracy of 0.1 per cent of the analytical solutions. The resulting optimal values of distance-size ratio for the gravitational potential and its gradient are 1 and 2.5, respectively. The density-based discretization algorithm produces no discretizations in the linear density case, but a delta ratio of 0.1 is needed for the exponential and most sinusoidal density functions. These values can be extrapolated to cover most common use cases, which are simpler than oscillating density profiles. However, the distance-size and delta ratios can be configured by the user to increase the accuracy of the results at the expense of computational speed. Finally, we apply this new methodology to model the Neuquén Basin, a foreland basin in Argentina with a maximum depth of over 5000 m, using an exponential density function.〈/span〉
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  • 57
    Publication Date: 2019
    Description: 〈span〉〈div〉Summary〈/div〉The dynamics of dyke emplacement are typically modeled by assuming an elastic rheology for the host rock. However, the resulting stress field predicts significant shear failure in the region surrounding the dyke tip. Here, we model the dyking process in an elastic-perfectly plastic host rock in order to simulate distributed shear fracturing and subsequent frictional slip on the fracture surfaces. The fluid mechanical aspects of the magma are neglected as we are interested only in the fracture mechanics of the process. Magma overpressure in dykes is typically of the same order of magnitude as the yield stress of the host rock in shear, especially when the pressure effect of volatiles exsolving from the magma is taken into account. Under these conditions, the plastic deformation zone has spatial dimensions that approach the length of the dyke itself, and concepts based on linear elastic fracture mechanics (LEFM) no longer apply. As incremental plasticity is path dependent, we describe two geologically meaningful endmember cases, namely dyke propagation at constant driving pressure, and gradual inflation of a pre-existing crack. For both models, we find that plastic deformation surrounding the fracture tip enhances dyke opening, and thus increases the energy input into the system due to pressure work integrated over the fracture wall. At the same time, energy is dissipated by plastic deformation. Dissipation in the propagation model is greater by about an order of magnitude than it is in the inflation model because the propagating dyke tip leaves behind it a broad halo of deformation due to plastic bending and unbending in the relict process zone. The net effect is that plastic deformation impedes dyke growth in the propagation model, while it enhances dyke growth in the inflation model. The results show that, when the plastic failure zone is large, a single parameter such as fracture toughness is unable to capture the physics that underpin the resistance of a fracture or dyke against propagation. In these cases, plastic failure has to be modeled explicitly for the given conditions. We provide analytical approximations for the propagation forces and the maximum dyke aperture for the two endmember cases, that is, the propagating dyke and the dyke formed by inflation of a crack. Furthermore, we show that the effect of plasticity on dyke energetics, together with an overestimate of magma pressure when interpreting dyke aspect ratios using elastic host rock models, offers a possible explanation for the long-standing paradox that laboratory measurements of fracture toughness of rocks consistently indicate values about two orders of magnitude lower than those derived from dyke observations.〈/span〉
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  • 58
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  • 59
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  • 60
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  • 61
    Publication Date: 2019
    Description: 〈p〉Membraneless organelles involved in RNA processing are biomolecular condensates assembled by phase separation. Despite the important role of intrinsically disordered protein regions (IDRs), the specific interactions underlying IDR phase separation and its functional consequences remain elusive. To address these questions, we used minimal condensates formed from the C-terminal disordered regions of two interacting translational regulators, FMRP and CAPRIN1. Nuclear magnetic resonance spectroscopy of FMRP-CAPRIN1 condensates revealed interactions involving arginine-rich and aromatic-rich regions. We found that different FMRP serine/threonine and CAPRIN1 tyrosine phosphorylation patterns control phase separation propensity with RNA, including subcompartmentalization, and tune deadenylation and translation rates in vitro. The resulting evidence for residue-specific interactions underlying co–phase separation, phosphorylation-modulated condensate architecture, and enzymatic activity within condensates has implications for how the integration of signaling pathways controls RNA processing and translation.〈/p〉
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  • 62
    Publication Date: 2019
    Description: 〈p〉SARM1 (sterile alpha and TIR motif containing 1) is responsible for depletion of nicotinamide adenine dinucleotide in its oxidized form (NAD〈sup〉+〈/sup〉) during Wallerian degeneration associated with neuropathies. Plant nucleotide-binding leucine-rich repeat (NLR) immune receptors recognize pathogen effector proteins and trigger localized cell death to restrict pathogen infection. Both processes depend on closely related Toll/interleukin-1 receptor (TIR) domains in these proteins, which, as we show, feature self-association–dependent NAD〈sup〉+〈/sup〉 cleavage activity associated with cell death signaling. We further show that SARM1 SAM (sterile alpha motif) domains form an octamer essential for axon degeneration that contributes to TIR domain enzymatic activity. The crystal structures of ribose and NADP〈sup〉+〈/sup〉 (the oxidized form of nicotinamide adenine dinucleotide phosphate) complexes of SARM1 and plant NLR RUN1 TIR domains, respectively, reveal a conserved substrate binding site. NAD〈sup〉+〈/sup〉 cleavage by TIR domains is therefore a conserved feature of animal and plant cell death signaling pathways.〈/p〉
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  • 63
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  • 64
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  • 65
    Publication Date: 2019
    Description: 〈p〉The near-Earth asteroid (162173) Ryugu is a 900-m-diameter dark object expected to contain primordial material from the solar nebula. The Mobile Asteroid Surface Scout (MASCOT) landed on Ryugu’s surface on 3 October 2018. We present images from the MASCOT camera (MASCam) taken during the descent and while on the surface. The surface is covered by decimeter- to meter-sized rocks, with no deposits of fine-grained material. Rocks appear either bright, with smooth faces and sharp edges, or dark, with a cauliflower-like, crumbly surface. Close-up images of a rock of the latter type reveal a dark matrix with small, bright, spectrally different inclusions, implying that it did not experience extensive aqueous alteration. The inclusions appear similar to those in carbonaceous chondrite meteorites.〈/p〉
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  • 66
    Publication Date: 2019
    Description: 〈p〉Van Meter 〈i〉et al〈/i〉. (Reports, 27 April 2018, p. 427) warn that achieving nitrogen reduction goals in the Gulf of Mexico will take decades as a result of legacy nitrogen effects. We discuss limitations of the modeling approach and demonstrate that legacy effects ranging from a few years to decades are equally consistent with observations. The presented time scales for system recovery are therefore highly uncertain.〈/p〉
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  • 67
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  • 68
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  • 69
    Publication Date: 2019
    Description: 〈p〉Malaria parasites adopt a remarkable variety of morphological life stages as they transition through multiple mammalian host and mosquito vector environments. We profiled the single-cell transcriptomes of thousands of individual parasites, deriving the first high-resolution transcriptional atlas of the entire 〈i〉Plasmodium berghei〈/i〉 life cycle. We then used our atlas to precisely define developmental stages of single cells from three different human malaria parasite species, including parasites isolated directly from infected individuals. The Malaria Cell Atlas provides both a comprehensive view of gene usage in a eukaryotic parasite and an open-access reference dataset for the study of malaria parasites.〈/p〉
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  • 70
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  • 71
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  • 72
    Publication Date: 2019
    Description: 〈p〉Soil organisms represent the most biologically diverse community on land and govern the turnover of the largest organic matter pool in the terrestrial biosphere. The highly complex nature of these communities at local scales has traditionally obscured efforts to identify unifying patterns in global soil biodiversity and biogeochemistry. As a result, environmental covariates have generally been used as a proxy to represent the variation in soil community activity in global biogeochemical models. Yet over the past decade, broad-scale studies have begun to see past this local heterogeneity to identify unifying patterns in the biomass, diversity, and composition of certain soil groups across the globe. These unifying patterns provide new insights into the fundamental distribution and dynamics of organic matter on land.〈/p〉
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  • 73
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  • 74
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  • 75
    Publication Date: 2019
    Description: 〈p〉Welding of ceramics is a key missing component in modern manufacturing. Current methods cannot join ceramics in proximity to temperature-sensitive materials like polymers and electronic components. We introduce an ultrafast pulsed laser welding approach that relies on focusing light on interfaces to ensure an optical interaction volume in ceramics to stimulate nonlinear absorption processes, causing localized melting rather than ablation. The key is the interplay between linear and nonlinear optical properties and laser energy–material coupling. The welded ceramic assemblies hold high vacuum and have shear strengths comparable to metal-to-ceramic diffusion bonds. Laser welding can make ceramics integral components in devices for harsh environments as well as in optoelectronic and/or electronic packages needing visible-radio frequency transparency.〈/p〉
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  • 78
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  • 79
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  • 80
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  • 81
    Publication Date: 2019
    Description: 〈p〉The concept of topological phases is a powerful framework for characterizing ground states of quantum many-body systems that goes beyond the paradigm of symmetry breaking. Topological phases can appear in condensed-matter systems naturally, whereas the implementation and study of such quantum many-body ground states in artificial matter require careful engineering. Here, we report the experimental realization of a symmetry-protected topological phase of interacting bosons in a one-dimensional lattice and demonstrate a robust ground state degeneracy attributed to protected zero-energy edge states. The experimental setup is based on atoms trapped in an array of optical tweezers and excited into Rydberg levels, which gives rise to hard-core bosons with an effective hopping generated by dipolar exchange interaction.〈/p〉
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  • 82
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  • 83
    Publication Date: 2019
    Description: 〈p〉Ballard 〈i〉et al〈/i〉. argue that our prediction of a 30-year or longer recovery time for Gulf of Mexico water quality is highly uncertain, and that much shorter time lags are equally likely. We demonstrate that their argument, based on the use of a two-component regression model, does not sufficiently consider fundamental watershed processes or multiple lines of evidence suggesting the existence of decadal-scale lags.〈/p〉
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  • 85
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 86
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 87
    Publication Date: 2019
    Description: 〈p〉Plant nucleotide-binding leucine-rich repeat (NLR) immune receptors activate cell death and confer disease resistance by unknown mechanisms. We demonstrate that plant Toll/interleukin-1 receptor (TIR) domains of NLRs are enzymes capable of degrading nicotinamide adenine dinucleotide in its oxidized form (NAD〈sup〉+〈/sup〉). Both cell death induction and NAD〈sup〉+〈/sup〉 cleavage activity of plant TIR domains require known self-association interfaces and a putative catalytic glutamic acid that is conserved in both bacterial TIR NAD〈sup〉+〈/sup〉-cleaving enzymes (NADases) and the mammalian SARM1 (sterile alpha and TIR motif containing 1) NADase. We identify a variant of cyclic adenosine diphosphate ribose as a biomarker of TIR enzymatic activity. TIR enzymatic activity is induced by pathogen recognition and functions upstream of the genes 〈i〉enhanced disease susceptibility 1〈/i〉 (〈i〉EDS1〈/i〉) and 〈i〉N requirement gene 1〈/i〉 (〈i〉NRG1〈/i〉), which encode regulators required for TIR immune function. Thus, plant TIR-NLR receptors require NADase function to transduce recognition of pathogens into a cell death response.〈/p〉
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  • 88
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    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2019
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  • 89
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    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2019
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  • 90
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    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2019
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  • 91
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
    Description: 〈p〉How do neurons encode long-term memories? Bilateral imaging of neuronal activity in the mouse hippocampus reveals that, from one day to the next, ~40% of neurons change their responsiveness to cues, but thereafter only 1% of cells change per day. Despite these changes, neuronal responses are resilient to a lack of exposure to a previously completed task or to hippocampus lesions. Unlike individual neurons, the responses of which change after a few days, groups of neurons with inter- and intrahemispheric synchronous activity show stable responses for several weeks. The likelihood that a neuron maintains its responsiveness across days is proportional to the number of neurons with which its activity is synchronous. Information stored in individual neurons is relatively labile, but it can be reliably stored in networks of synchronously active neurons.〈/p〉
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  • 92
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    American Association for the Advancement of Science (AAAS)
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    Publication Date: 2019
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  • 93
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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    Electronic ISSN: 1095-9203
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  • 94
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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    Electronic ISSN: 1095-9203
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  • 95
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 96
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    American Association for the Advancement of Science (AAAS)
    In: Science
    Publication Date: 2019
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  • 97
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉Building geomechanical models for induced seismicity in complex reservoirs poses a major challenge, in particular if many faults need to be included. We developed a novel way of calculating induced stress changes and associated seismic moment response for structurally complex reservoirs with tens to hundreds of faults. Our specific target was to improve the predictive capability of stress evolution along multiple faults, and to use the calculations to enhance physics-based understanding of the reservoir seismicity. Our methodology deploys a mesh-free numerical and analytical approach for both the stress calculation and the seismic moment calculation. We introduce a high-performance computational method for high-resolution induced Coulomb stress changes along faults, based on a Green's function for the stress response to a nucleus of strain. One key ingredient is the deployment of an octree representation and calculation scheme for the nuclei of strain, based on the topology and spatial variability of the mesh of the reservoir flow model. Once the induced stress changes are evaluated along multiple faults, we calculate potential seismic moment release in a fault system supposing an initial stress field. The capability of the approach, dubbed as MACRIS (〈strong〉M〈/strong〉echanical 〈strong〉A〈/strong〉nalysis of 〈strong〉C〈/strong〉omplex 〈strong〉R〈/strong〉eservoirs for 〈strong〉I〈/strong〉nduced 〈strong〉S〈/strong〉eismicity) is proven through comparisons with finite element models. Computational performance and suitability for probabilistic assessment of seismic hazards are demonstrated though the use of the complex, heavily faulted Gullfaks field.〈/span〉
    Print ISSN: 2051-1965
    Electronic ISSN: 1365-246X
    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 98
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉We test the feasibility of GPS-based rapid centroid moment tensor (GPS CMT) methods for Taiwan, one of the most earthquake prone areas in the world. In recent years, Taiwan has become a leading developer of seismometer-based earthquake early warning systems, which have successfully been applied to several large events. The rapid determination of earthquake magnitude and focal mechanism, important for a number of rapid response applications, including tsunami warning, is still challenging because of the limitations of near-field inertial recordings. This instrumental issue can be solved by an entirely different observation system: a GPS network. Taiwan is well posed to take advantage of GPS because in the last decade it has developed a very dense network. Thus, in this research, we explore the suitability of the GPS CMT inversion for Taiwan. We retrospectively investigate six moderate to large (〈span〉M〈/span〉〈sub〉w〈/sub〉6.0 ∼ 7.0) earthquakes and propose a resolution test for our model, we find that the minimum resolvable earthquake magnitude of this system is ∼〈span〉M〈/span〉〈sub〉w〈/sub〉5.5 (at 5 km depth). Our tests also suggest that the finite fault complexity, often challenging for the near-field methodology, can be ignored under such good station coverage and thus, can provide a fast and robust solution for large earthquake directly from the near field. Our findings help to understand and quantify how the proposed methodology could be implemented in real time and what its contributions could be to the overall earthquake monitoring system.〈/span〉
    Print ISSN: 2051-1965
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    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 99
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉Time-domain processing of seismic reflection data has always been an important engine that is routinely utilized to produce seismic images and to expeditiously construct subsurface models. The conventional procedure involves analysing parameters related to the derivatives of reflection traveltime with respect to offset including normal moveout (NMO) velocities (second-order derivatives) and quartic coefficients (fourth-order derivatives). In this study, we propose to go beyond the typical assumption of 1-D laterally homogeneous medium when relating those ‘processing’ parameters to the subsurface medium parameters and take into account the additional influences from lateral heterogeneity including curved interfaces and smoothly variable velocities. We fill in the theoretical gap from previous studies and develop a general framework for such connection in layered anisotropic media. We show that in general, the influences of lateral heterogeneity get accumulated from all layers via a recursive relationship according to the Fermat’s principle and can be approximately quantified in terms of the lateral derivatives of the layer interface surfaces and velocities. Based on the same general principle, we show that our approach can also be used to study the lateral heterogeneity effects on diffraction traveltime and its second-order derivative related to time-migration velocity. In this paper, we explicitly specify expressions for NMO and time-migration velocities with the influences from both types of heterogeneity suitable for 2-D data sets and also discuss possible extensions of the proposed theory to 3-D data sets and to parameters related to higher-order traveltime derivatives. Using numerical examples, we demonstrate that the proposed theory can lead to more accurate reflection and diffraction traveltime predictions in comparison with those obtained based on the 1-D assumption. Both the proposed theoretical framework and its numerical testing for forward traveltime computation presented in this study aid in understanding the effects from lateral heterogeneity on time-processing parameters and also serve as an important basis for designing an efficient technique to separate those influences in important processes such as Dix inversion for a more accurate subsurface model in the future.〈/span〉
    Print ISSN: 2051-1965
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    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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  • 100
    Publication Date: 2019
    Description: 〈span〉〈div〉SUMMARY〈/div〉Estimating shear wave velocity with depth from Rayleigh-wave dispersion data is limited by the accuracy of fundamental and higher mode identification and characterization. In many cases, the fundamental mode signal propagates exclusively in retrograde motion, while higher modes propagate in prograde motion. It has previously been shown that differences in particle motion can be identified with multicomponent recordings and used to separate prograde from retrograde signals. Here we explore the domain of existence of prograde motion of the fundamental mode, arising from a combination of two conditions: (1) a shallow, high-impedance contrast and (2) a high Poisson ratio material. We present solutions to isolate fundamental and higher mode signals using multicomponent recordings. Previously, a time-domain polarity mute was used with limited success due to the overlap in the time domain of fundamental and higher mode signals at low frequencies. We present several new approaches to overcome this low-frequency obstacle, all of which utilize the different particle motions of retrograde and prograde signals. First, the Hilbert transform is used to phase shift one component by 90° prior to summation or subtraction of the other component. This enhances either retrograde or prograde motion and can increase the mode amplitude. Secondly, we present a new time–frequency domain polarity mute to separate retrograde and prograde signals. We demonstrate these methods with synthetic and field data to highlight the improvements to dispersion images and the resulting dispersion curve extraction.〈/span〉
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    Topics: Geosciences
    Published by Oxford University Press on behalf of The Deutsche Geophysikalische Gesellschaft (DGG) and the Royal Astronomical Society (RAS).
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