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  • Molecular Sequence Data  (496)
  • Atmosphere-ocean system
  • Salinity
  • American Association for the Advancement of Science (AAAS)  (505)
  • American Meteorological Society  (2)
  • UNESCO  (2)
  • WOCE Hydrographic Programme Offce, Woods Hole Oceanographic Institution  (1)
  • Springer Nature
  • 2005-2009  (510)
  • 1975-1979
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  • 1
    Publication Date: 2017-04-04
    Description: In this paper results from the application of an ocean data assimilation (ODA) system, combining a multivariate reduced-order optimal interpolator (OI) scheme with a global ocean general circulation model (OGCM), are described. The present ODA system, designed to assimilate in situ temperature and salinity observations, has been used to produce ocean reanalyses for the 1962–2001 period. The impact of assimilating observed hydrographic data on the ocean mean state and temporal variability is evaluated. A special focus of this work is on the ODA system skill in reproducing a realistic ocean salinity state. Results from a hierarchy of different salinity reanalyses, using varying combinations of assimilated data and background error covariance structures, are described. The impact of the space and time resolution of the background error covariance parameterization on salinity is addressed.
    Description: This work has been funded by the ENACT Project (Contract EVK2-CT2001-00117) for A. Bellucci and P. Di Pietro, and partially by the ENSEMBLES Project (Contract GOCE-CT-2003-505539) for A. Bellucci.
    Description: Published
    Description: 3785-3807
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: reserved
    Keywords: ocean modelling ; data assimilation ; reanalysis ; upper ocean variability ; temperature ; Salinity ; 03. Hydrosphere::03.01. General::03.01.04. Ocean data assimilation and reanalysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
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    American Meteorological Society
    Publication Date: 2021-05-19
    Description: Skill in ensemble-mean dynamical seasonal climate hindcasts with a coupled land-atmosphere model and specified observed sea surface temperature is compared to that for long multi-decade integrations of the same model where the initial conditions are far removed from the seasons of validation. The evaluations are performed for surface temperature and compared among all seasons. Skill is found to be higher in the seasonal simulations than the multi-decadal integrations except during boreal winter. The higher skill is prominent even beyond the first month when the direct influence of the atmospheric initial state elevates model skill. Skill is generally found to be lowest during the winter season for the dynamical seasonal forecasts, equal to that of the long integrations, which show some of the highest skill during winter. The reason for the differences in skill during the non-winter months is attributed to the severe climate drift in the long simulations, manifest through errors in downward fluxes of water and energy over land and evident in soil wetness. The drift presses the land surface to extreme dry or wet states over much of the globe, into a range where there is little sensitivity of evaporation to fluctuations in soil moisture. Thus, the land-atmosphere feedback is suppressed, which appears to lessen the model’s ability to respond correctly over land to remote ocean temperature anomalies.
    Description: Center for Ocean-Land-Atmosphere Studies
    Description: Published
    Keywords: Atmosphere-ocean system
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed , Article
    Format: 503454 bytes
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  • 3
    Publication Date: 2021-05-19
    Description: This document is directed to the scientific research community and users of operational ocean data. It is also intended to provide an example and be a source of information to programmes such as the Global Ocean Observing System (GOOS) for developing and implementing end-to-end data management systems. The document is also directed towards Member States of IOC. It discusses how Member States can make contributions and how they can benefit from the GTSPP.
    Description: Published
    Description: temperature profile, salinity prifile, GTSPP
    Keywords: Oceanography ; Salinity ; Temperature data ; Temperature measurement ; Ocean circulation ; Salinity ; Salinity data ; Salinity measurement ; Salinity profiles ; Salinity scales
    Repository Name: AquaDocs
    Type: Report
    Format: 33
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  • 4
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    UNESCO
    Publication Date: 2021-01-30
    Description: The Integrated Global Observing Strategy Partnership (IGOS-P) established, in 1999, a thematic approach to the implementation of the IGOS. Recognising that other themes will emerge, the “Ocean Theme” was chosen to be the “pathfinder” in this approach and an Ocean Theme Team was assembled to formulate guidance. One goal of the Ocean Theme Team is to consider and study the full range of current and planned observations, while identifying potential gaps in future observations that might compromise ocean observational records. This document presents a proposed set of long-term ocean observations and identifies a number of challenges for the improvement of knowledge about both the oceans and observing techniques. The overall strategy is to create an observing system for the oceans that serves the research and operational oceanographic communities. The set of observations is based on an evaluation of the range of requirements that have already been presented by GOOS, GCOS, and GODAE. The next five years must include development of institutional structures committed to (1) managing the total data flow (in situ as well as satellite); (2) managing the production, distribution and quality assessment of relevant data products; and (3) working with end-users to ensure that the evolving system is responsive to their needs. It is also recognised that observation protocols evolve with time and, therefore, that the stated observational requirements will need to be reviewed in future. It is the recognised applications that ultimately drive the shape of the requirements for the ocean observing system. The observations on which we focus here are needed to address important issues in ocean science, and through combinations of measurements and models, to support the production of an extensive range of products for a broad community of users. The applications are directly linked to societal needs, including among other things numerical weather prediction, seasonal-to-interannual climate forecasts, and climate assessment. The data are needed for deriving fields of information about the ocean and for initialising and validating the models used to derive other products. Aside from observations we also need to improve, through the Global Ocean Data Assimilation Experiment (GODAE) and the Ocean Biology Project, how we assimilate the data into models.
    Description: Published
    Description: Ocean Biology, Ocean topography, Gravity, Geold, atmospheric pressure
    Keywords: Oceanography ; Salinity ; Surface temperature ; Wind vectors ; Sea ice ; Salinity
    Repository Name: AquaDocs
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  • 5
    Publication Date: 2022-05-26
    Description: This report summarizes the work, under the auspices of the WOCE Hydrographic Programme (WHP), which took place on the R/V Akademik Vernadsky in June-July 1991. The goal of the exercise was an international comparison/training cruise to obtain comparisons of water sampling methods and analytical techniques employed by several groups for the oceanographic measurement of salinity and oxygen in seawater. The training aspect was formalized in a pre-cruise practicum held on board the vessel by Dr. Fred Culkin and Mr. Paul Ridout of Ocean Scientific International, the manufacturer of IAPSO Standard Seawater, At-sea comparisons of Russian Reference Water, manufactured in Moscow, were made with IAPSO water. Further work involved comparisons of a Guildline and a pair of SOKOL salinometers using reference water and natural seawater collected on the cruise. While the agreement among the salnometers was quite good and at the level of acceptability for the WHP, it was discovered that lack of thermal equilbration of the salinity samples run on the SOKOLs led to substantial "errors" at large depths (or for cold water samples). This could not have been anticipated before the cruise and would have been missed in a shore-based or laboratory exercise. All five groups making oxygen comparisons benefitted from the technical exchange afforded by the cruise and, as a result of reconciling inter-group differences, have identified procedural changes they wil make in the future in order to achieve the high standards required by the WHP, The technical interaction, which amounted to "training" for all groups, was greatly facilitated by the cooperation of Captain Malnovsky, Chief Scientist Panteleyev, the scientists from MHI, Sevastopol, and the crew of the Vernadsky. On the Vernadsky comparison cruise, a shore-based practicum was held prior to sailing in order to review the theory and measurement of salinity. The cruise itself, which took place between 27 June and 8 July 1991, was in the NE Atlantic to the west of Madeira. An international group of experts in salnity and oxygen measurements was drawn from the United Kingdom (UK), Spain, Russia, Ukraine, and the United States (US). Except for one of the five groups, measured oxygen values in the range of 3-5 mIll (concentration units are used throughout) agreed with one another within :11%, which exceeds the WOCE requirements by a factor of 2. Subsequent analyses of the differences by all five groups could account for much of the observed inter-group variations, Intra-group precision was generally in the range of 0,1-0.4%, As a result, of a low oxygen sparging experiment in which sample oxygens 0: 1.2 mIll were generated, substantial inter-group differences of :1.08 mIll were found indicating that oxygen specifications for WOCE need to be expressed as both a percent "error" and a low oxygen bias. The salinity comparison component of the cruise enabled comparison of various batches of Russian Reference Water (RRW) of various salnities (10, 20, 30, 35 and 40) against IAPSO Standard Seawater (SSW) of various salinities (10, 30, 35 and 38); inferences could then also be drawn on the relative performance of the two types of salinometer (Guildline Autosal 8400 and SOKOL 4602) used during the experiment. Under quasilaboratory conditions, the machines produced mean results different by no more than 0.001 in salinity for salinity 35 RRW, standardizing against salinity 35 SSW. The other salnities produced less conclusive results, but the three salinometers deviated by no more than 0.003 from the expected value over a wide range of salinities. Under operational conditions (analysis of duplicate samples collected from CTD casts) a mean bias emerged between machines of approximately 0.005 in salinity (SOKOL fresher than Guildline), Subsequent investigations tentatively ascribed this bias to non-equilbration of deep (cold) samples in the Russian system.
    Description: Prepared for the National Science Foundation under Grants OCE89-07815, and OCE92-06184, T. Joyce, Principal Investigator; Vetlesen Funds, Woods Hole Oceanographic Institution; and with support from the Intergovernmental Oceanographic Commission.
    Keywords: Vernadsky (Ship) ; World Ocean Circulation Experiment ; Oxygen ; Salinity ; Oceanography ; Measurement
    Repository Name: Woods Hole Open Access Server
    Type: Working Paper
    Format: 3230770 bytes
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  • 6
    Publication Date: 2006-09-09
    Description: CD8-positive T lymphocytes recognize peptides that are usually derived from the degradation of cellular proteins and are presented by class I molecules of the major histocompatibility complex. Here we describe a human minor histocompatibility antigen created by a polymorphism in the SP110 nuclear phosphoprotein gene. The antigenic peptide comprises two noncontiguous SP110 peptide segments spliced together in reverse order to that in which they occur in the predicted SP110 protein. The antigenic peptide could be produced in vitro by incubation of precursor peptides with highly purified 20S proteasomes. Cutting and splicing probably occur within the proteasome by transpeptidation.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Warren, Edus H -- Vigneron, Nathalie J -- Gavin, Marc A -- Coulie, Pierre G -- Stroobant, Vincent -- Dalet, Alexandre -- Tykodi, Scott S -- Xuereb, Suzanne M -- Mito, Jeffrey K -- Riddell, Stanley R -- Van den Eynde, Benoit J -- CA106512/CA/NCI NIH HHS/ -- CA18029/CA/NCI NIH HHS/ -- P01 CA018029/CA/NCI NIH HHS/ -- New York, N.Y. -- Science. 2006 Sep 8;313(5792):1444-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Program in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA 98109, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16960008" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Amino Acid Motifs ; Amino Acid Sequence ; Amino Acid Substitution ; *Antigen Presentation ; B-Lymphocytes/immunology ; Cell Line, Transformed ; Cytotoxicity, Immunologic ; Electroporation ; HLA-A Antigens/immunology ; Humans ; Interferon-gamma/metabolism ; Male ; Middle Aged ; Minor Histocompatibility Antigens/genetics/*immunology/*metabolism ; Molecular Sequence Data ; Nuclear Proteins/chemistry/genetics/*immunology/*metabolism ; Peptide Fragments/metabolism ; Polymorphism, Single Nucleotide ; Proteasome Endopeptidase Complex/metabolism ; *Protein Splicing ; T-Lymphocytes, Cytotoxic/*immunology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2006-11-18
    Description: Using single-molecule DNA nanomanipulation, we show that abortive initiation involves DNA "scrunching"--in which RNA polymerase (RNAP) remains stationary and unwinds and pulls downstream DNA into itself--and that scrunching requires RNA synthesis and depends on RNA length. We show further that promoter escape involves scrunching, and that scrunching occurs in most or all instances of promoter escape. Our results support the existence of an obligatory stressed intermediate, with approximately one turn of additional DNA unwinding, in escape and are consistent with the proposal that stress in this intermediate provides the driving force to break RNAP-promoter and RNAP-initiation-factor interactions in escape.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2754787/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2754787/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Revyakin, Andrey -- Liu, Chenyu -- Ebright, Richard H -- Strick, Terence R -- GM41376/GM/NIGMS NIH HHS/ -- R01 GM041376/GM/NIGMS NIH HHS/ -- R01 GM041376-15/GM/NIGMS NIH HHS/ -- R01 GM041376-16/GM/NIGMS NIH HHS/ -- R01 GM041376-17/GM/NIGMS NIH HHS/ -- R01 GM041376-18/GM/NIGMS NIH HHS/ -- Howard Hughes Medical Institute/ -- New York, N.Y. -- Science. 2006 Nov 17;314(5802):1139-43.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Howard Hughes Medical Institute, Waksman Institute, and Department of Chemistry, Rutgers University, Piscataway, NJ 08854, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17110577" target="_blank"〉PubMed〈/a〉
    Keywords: Base Sequence ; Biomechanical Phenomena ; DNA/chemistry/*metabolism ; DNA-Directed RNA Polymerases/*metabolism ; Models, Genetic ; Molecular Sequence Data ; Nucleic Acid Conformation ; *Promoter Regions, Genetic ; RNA/biosynthesis ; Transcription Initiation Site/physiology ; Transcription, Genetic/*physiology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2006-11-25
    Description: The Dobzhansky-Muller model proposes that hybrid incompatibilities are caused by the interaction between genes that have functionally diverged in the respective hybridizing species. Here, we show that Lethal hybrid rescue (Lhr) has functionally diverged in Drosophila simulans and interacts with Hybrid male rescue (Hmr), which has functionally diverged in D. melanogaster, to cause lethality in F1 hybrid males. LHR localizes to heterochromatic regions of the genome and has diverged extensively in sequence between these species in a manner consistent with positive selection. Rapidly evolving heterochromatic DNA sequences may be driving the evolution of this incompatibility gene.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Brideau, Nicholas J -- Flores, Heather A -- Wang, Jun -- Maheshwari, Shamoni -- Wang, Xu -- Barbash, Daniel A -- R01 GM074737-01/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2006 Nov 24;314(5803):1292-5.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/17124320" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Animals ; Chromosomal Proteins, Non-Histone/metabolism ; Chromosome Mapping ; Crosses, Genetic ; Drosophila/*genetics/physiology ; Drosophila Proteins/chemistry/*genetics/metabolism ; Drosophila melanogaster/*genetics/physiology ; *Evolution, Molecular ; Female ; *Genes, Insect ; Genetic Speciation ; *Hybridization, Genetic ; Male ; Molecular Sequence Data ; Selection, Genetic ; Transformation, Genetic ; Transgenes
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2006-03-11
    Description: Nisin is a posttranslationally modified antimicrobial peptide that is widely used as a food preservative. It contains five cyclic thioethers of varying sizes that are installed by a single enzyme, NisC. Reported here are the in vitro reconstitution of the cyclization process and the x-ray crystal structure of the NisC enzyme. The structure reveals similarities in fold and substrate activation with mammalian farnesyl transferases, suggesting that human homologs of NisC posttranslationally modify a cysteine of a protein substrate.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Bo -- Yu, John Paul J -- Brunzelle, Joseph S -- Moll, Gert N -- van der Donk, Wilfred A -- Nair, Satish K -- GM58822/GM/NIGMS NIH HHS/ -- R01 GM079038/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2006 Mar 10;311(5766):1464-7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Biochemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL 61801, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16527981" target="_blank"〉PubMed〈/a〉
    Keywords: Amino Acid Sequence ; Anti-Bacterial Agents/*biosynthesis/chemistry ; Carbon-Sulfur Lyases/chemistry/genetics/*metabolism ; Crystallography, X-Ray ; Farnesyltranstransferase/chemistry ; Humans ; Lactococcus lactis/*enzymology ; Models, Molecular ; Molecular Sequence Data ; Nisin/*biosynthesis/chemistry ; Protein Conformation ; Protein Processing, Post-Translational ; Sequence Homology, Amino Acid ; Structure-Activity Relationship
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 10
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    Unknown
    American Association for the Advancement of Science (AAAS)
    Publication Date: 2006-03-11
    Description: Crop domestication frequently began with the selection of plants that did not naturally shed ripe fruits or seeds. The reduction in grain shattering that led to cereal domestication involved genetic loci of large effect. The molecular basis of this key domestication transition, however, remains unknown. Here we show that human selection of an amino acid substitution in the predicted DNA binding domain encoded by a gene of previously unknown function was primarily responsible for the reduction of grain shattering in rice domestication. The substitution undermined the gene function necessary for the normal development of an abscission layer that controls the separation of a grain from the pedicel.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Li, Changbao -- Zhou, Ailing -- Sang, Tao -- New York, N.Y. -- Science. 2006 Mar 31;311(5769):1936-9. Epub 2006 Mar 9.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Plant Biology, Michigan State University, East Lansing, MI 48824, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16527928" target="_blank"〉PubMed〈/a〉
    Keywords: Alleles ; Amino Acid Sequence ; Amino Acid Substitution ; Biological Evolution ; Chromosome Mapping ; Computational Biology ; Crops, Agricultural/*genetics/growth & development ; Flowers/growth & development ; Gene Expression ; Genes, Plant ; Genotype ; Molecular Sequence Data ; Mutation ; Oryza/cytology/*genetics/growth & development ; Phenotype ; Plant Proteins/chemistry/*genetics ; Plants, Genetically Modified ; Quantitative Trait Loci ; Reverse Transcriptase Polymerase Chain Reaction ; Sequence Analysis, DNA ; Transcription Factors/chemistry/*genetics ; Transformation, Genetic
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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