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  • Cell Line  (376)
  • Atmosphere-ocean system
  • Salinity
  • American Association for the Advancement of Science (AAAS)  (385)
  • American Meteorological Society  (2)
  • UNESCO  (2)
  • WOCE Hydrographic Programme Offce, Woods Hole Oceanographic Institution  (1)
  • Springer Nature
  • 2005-2009  (355)
  • 1975-1979  (35)
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  • 1
    Publication Date: 2017-04-04
    Description: In this paper results from the application of an ocean data assimilation (ODA) system, combining a multivariate reduced-order optimal interpolator (OI) scheme with a global ocean general circulation model (OGCM), are described. The present ODA system, designed to assimilate in situ temperature and salinity observations, has been used to produce ocean reanalyses for the 1962–2001 period. The impact of assimilating observed hydrographic data on the ocean mean state and temporal variability is evaluated. A special focus of this work is on the ODA system skill in reproducing a realistic ocean salinity state. Results from a hierarchy of different salinity reanalyses, using varying combinations of assimilated data and background error covariance structures, are described. The impact of the space and time resolution of the background error covariance parameterization on salinity is addressed.
    Description: This work has been funded by the ENACT Project (Contract EVK2-CT2001-00117) for A. Bellucci and P. Di Pietro, and partially by the ENSEMBLES Project (Contract GOCE-CT-2003-505539) for A. Bellucci.
    Description: Published
    Description: 3785-3807
    Description: 3.7. Dinamica del clima e dell'oceano
    Description: JCR Journal
    Description: reserved
    Keywords: ocean modelling ; data assimilation ; reanalysis ; upper ocean variability ; temperature ; Salinity ; 03. Hydrosphere::03.01. General::03.01.04. Ocean data assimilation and reanalysis
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 2
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    American Meteorological Society
    Publication Date: 2021-05-19
    Description: Skill in ensemble-mean dynamical seasonal climate hindcasts with a coupled land-atmosphere model and specified observed sea surface temperature is compared to that for long multi-decade integrations of the same model where the initial conditions are far removed from the seasons of validation. The evaluations are performed for surface temperature and compared among all seasons. Skill is found to be higher in the seasonal simulations than the multi-decadal integrations except during boreal winter. The higher skill is prominent even beyond the first month when the direct influence of the atmospheric initial state elevates model skill. Skill is generally found to be lowest during the winter season for the dynamical seasonal forecasts, equal to that of the long integrations, which show some of the highest skill during winter. The reason for the differences in skill during the non-winter months is attributed to the severe climate drift in the long simulations, manifest through errors in downward fluxes of water and energy over land and evident in soil wetness. The drift presses the land surface to extreme dry or wet states over much of the globe, into a range where there is little sensitivity of evaporation to fluctuations in soil moisture. Thus, the land-atmosphere feedback is suppressed, which appears to lessen the model’s ability to respond correctly over land to remote ocean temperature anomalies.
    Description: Center for Ocean-Land-Atmosphere Studies
    Description: Published
    Keywords: Atmosphere-ocean system
    Repository Name: AquaDocs
    Type: Journal Contribution , Refereed , Article
    Format: 503454 bytes
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  • 3
    Publication Date: 2021-05-19
    Description: This document is directed to the scientific research community and users of operational ocean data. It is also intended to provide an example and be a source of information to programmes such as the Global Ocean Observing System (GOOS) for developing and implementing end-to-end data management systems. The document is also directed towards Member States of IOC. It discusses how Member States can make contributions and how they can benefit from the GTSPP.
    Description: Published
    Description: temperature profile, salinity prifile, GTSPP
    Keywords: Oceanography ; Salinity ; Temperature data ; Temperature measurement ; Ocean circulation ; Salinity ; Salinity data ; Salinity measurement ; Salinity profiles ; Salinity scales
    Repository Name: AquaDocs
    Type: Report
    Format: 33
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  • 4
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    UNESCO
    Publication Date: 2021-01-30
    Description: The Integrated Global Observing Strategy Partnership (IGOS-P) established, in 1999, a thematic approach to the implementation of the IGOS. Recognising that other themes will emerge, the “Ocean Theme” was chosen to be the “pathfinder” in this approach and an Ocean Theme Team was assembled to formulate guidance. One goal of the Ocean Theme Team is to consider and study the full range of current and planned observations, while identifying potential gaps in future observations that might compromise ocean observational records. This document presents a proposed set of long-term ocean observations and identifies a number of challenges for the improvement of knowledge about both the oceans and observing techniques. The overall strategy is to create an observing system for the oceans that serves the research and operational oceanographic communities. The set of observations is based on an evaluation of the range of requirements that have already been presented by GOOS, GCOS, and GODAE. The next five years must include development of institutional structures committed to (1) managing the total data flow (in situ as well as satellite); (2) managing the production, distribution and quality assessment of relevant data products; and (3) working with end-users to ensure that the evolving system is responsive to their needs. It is also recognised that observation protocols evolve with time and, therefore, that the stated observational requirements will need to be reviewed in future. It is the recognised applications that ultimately drive the shape of the requirements for the ocean observing system. The observations on which we focus here are needed to address important issues in ocean science, and through combinations of measurements and models, to support the production of an extensive range of products for a broad community of users. The applications are directly linked to societal needs, including among other things numerical weather prediction, seasonal-to-interannual climate forecasts, and climate assessment. The data are needed for deriving fields of information about the ocean and for initialising and validating the models used to derive other products. Aside from observations we also need to improve, through the Global Ocean Data Assimilation Experiment (GODAE) and the Ocean Biology Project, how we assimilate the data into models.
    Description: Published
    Description: Ocean Biology, Ocean topography, Gravity, Geold, atmospheric pressure
    Keywords: Oceanography ; Salinity ; Surface temperature ; Wind vectors ; Sea ice ; Salinity
    Repository Name: AquaDocs
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  • 5
    Publication Date: 2022-05-26
    Description: This report summarizes the work, under the auspices of the WOCE Hydrographic Programme (WHP), which took place on the R/V Akademik Vernadsky in June-July 1991. The goal of the exercise was an international comparison/training cruise to obtain comparisons of water sampling methods and analytical techniques employed by several groups for the oceanographic measurement of salinity and oxygen in seawater. The training aspect was formalized in a pre-cruise practicum held on board the vessel by Dr. Fred Culkin and Mr. Paul Ridout of Ocean Scientific International, the manufacturer of IAPSO Standard Seawater, At-sea comparisons of Russian Reference Water, manufactured in Moscow, were made with IAPSO water. Further work involved comparisons of a Guildline and a pair of SOKOL salinometers using reference water and natural seawater collected on the cruise. While the agreement among the salnometers was quite good and at the level of acceptability for the WHP, it was discovered that lack of thermal equilbration of the salinity samples run on the SOKOLs led to substantial "errors" at large depths (or for cold water samples). This could not have been anticipated before the cruise and would have been missed in a shore-based or laboratory exercise. All five groups making oxygen comparisons benefitted from the technical exchange afforded by the cruise and, as a result of reconciling inter-group differences, have identified procedural changes they wil make in the future in order to achieve the high standards required by the WHP, The technical interaction, which amounted to "training" for all groups, was greatly facilitated by the cooperation of Captain Malnovsky, Chief Scientist Panteleyev, the scientists from MHI, Sevastopol, and the crew of the Vernadsky. On the Vernadsky comparison cruise, a shore-based practicum was held prior to sailing in order to review the theory and measurement of salinity. The cruise itself, which took place between 27 June and 8 July 1991, was in the NE Atlantic to the west of Madeira. An international group of experts in salnity and oxygen measurements was drawn from the United Kingdom (UK), Spain, Russia, Ukraine, and the United States (US). Except for one of the five groups, measured oxygen values in the range of 3-5 mIll (concentration units are used throughout) agreed with one another within :11%, which exceeds the WOCE requirements by a factor of 2. Subsequent analyses of the differences by all five groups could account for much of the observed inter-group variations, Intra-group precision was generally in the range of 0,1-0.4%, As a result, of a low oxygen sparging experiment in which sample oxygens 0: 1.2 mIll were generated, substantial inter-group differences of :1.08 mIll were found indicating that oxygen specifications for WOCE need to be expressed as both a percent "error" and a low oxygen bias. The salinity comparison component of the cruise enabled comparison of various batches of Russian Reference Water (RRW) of various salnities (10, 20, 30, 35 and 40) against IAPSO Standard Seawater (SSW) of various salinities (10, 30, 35 and 38); inferences could then also be drawn on the relative performance of the two types of salinometer (Guildline Autosal 8400 and SOKOL 4602) used during the experiment. Under quasilaboratory conditions, the machines produced mean results different by no more than 0.001 in salinity for salinity 35 RRW, standardizing against salinity 35 SSW. The other salnities produced less conclusive results, but the three salinometers deviated by no more than 0.003 from the expected value over a wide range of salinities. Under operational conditions (analysis of duplicate samples collected from CTD casts) a mean bias emerged between machines of approximately 0.005 in salinity (SOKOL fresher than Guildline), Subsequent investigations tentatively ascribed this bias to non-equilbration of deep (cold) samples in the Russian system.
    Description: Prepared for the National Science Foundation under Grants OCE89-07815, and OCE92-06184, T. Joyce, Principal Investigator; Vetlesen Funds, Woods Hole Oceanographic Institution; and with support from the Intergovernmental Oceanographic Commission.
    Keywords: Vernadsky (Ship) ; World Ocean Circulation Experiment ; Oxygen ; Salinity ; Oceanography ; Measurement
    Repository Name: Woods Hole Open Access Server
    Type: Working Paper
    Format: 3230770 bytes
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  • 6
    Publication Date: 2006-02-25
    Description: The transcription factor NF-kappaB modulates apoptotic responses induced by genotoxic stress. We show that NF-kappaB essential modulator (NEMO), the regulatory subunit of IkappaB kinase (IKK) (which phosphorylates the NF-kappaB inhibitor IkappaB), associates with activated ataxia telangiectasia mutated (ATM) after the induction of DNA double-strand breaks. ATM phosphorylates serine-85 of NEMO to promote its ubiquitin-dependent nuclear export. ATM is also exported in a NEMO-dependent manner to the cytoplasm, where it associates with and causes the activation of IKK in a manner dependent on another IKK regulator, a protein rich in glutamate, leucine, lysine, and serine (ELKS). Thus, regulated nuclear shuttling of NEMO links two signaling kinases, ATM and IKK, to activate NF-kappaB by genotoxic signals.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Wu, Zhao-Hui -- Shi, Yuling -- Tibbetts, Randal S -- Miyamoto, Shigeki -- R01-CA77474/CA/NCI NIH HHS/ -- R01-CA81065/CA/NCI NIH HHS/ -- R01-GM067868/GM/NIGMS NIH HHS/ -- New York, N.Y. -- Science. 2006 Feb 24;311(5764):1141-6.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Pharmacology, University of Wisconsin-Madison, 301 SMI, 1300 University Avenue, Madison, WI 53706, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16497931" target="_blank"〉PubMed〈/a〉
    Keywords: Active Transport, Cell Nucleus ; Adaptor Proteins, Signal Transducing/genetics/metabolism ; Amino Acid Motifs ; Ataxia Telangiectasia Mutated Proteins ; Cell Cycle Proteins/*metabolism ; Cell Line ; Cell Nucleus/metabolism ; Cytoplasm/metabolism ; *DNA Damage ; DNA-Binding Proteins/*metabolism ; Humans ; I-kappa B Kinase/*metabolism ; I-kappa B Proteins/genetics/metabolism ; NF-kappa B/metabolism ; Nerve Tissue Proteins/genetics/metabolism ; Phosphorylation ; Protein-Serine-Threonine Kinases/*metabolism ; RNA Interference ; Recombinant Fusion Proteins/metabolism ; SUMO-1 Protein/metabolism ; *Signal Transduction ; Tumor Suppressor Proteins/*metabolism ; Ubiquitin/metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 7
    Publication Date: 2006-05-20
    Description: We describe the use of gold nanoparticle-oligonucleotide complexes as intracellular gene regulation agents for the control of protein expression in cells. These oligonucleotide-modified nanoparticles have affinity constants for complementary nucleic acids that are higher than their unmodified oligonucleotide counterparts, are less susceptible to degradation by nuclease activity, exhibit greater than 99% cellular uptake, can introduce oligonucleotides at a higher effective concentration than conventional transfection agents, and are nontoxic to the cells under the conditions studied. By chemically tailoring the density of DNA bound to the surface of gold nanoparticles, we demonstrated a tunable gene knockdown.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Rosi, Nathaniel L -- Giljohann, David A -- Thaxton, C Shad -- Lytton-Jean, Abigail K R -- Han, Min Su -- Mirkin, Chad A -- New York, N.Y. -- Science. 2006 May 19;312(5776):1027-30.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Department of Chemistry and International Institute for Nanotechnology, Northwestern University, 2145 Sheridan Road, Evanston, IL 60208-3113 USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16709779" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Cell Line ; Deoxyribonucleases/metabolism ; *Gene Expression Regulation ; Glutathione/metabolism ; *Gold ; Green Fluorescent Proteins/genetics ; HeLa Cells ; Humans ; Mice ; *Nanostructures ; *Oligodeoxyribonucleotides, Antisense/metabolism ; RNA, Messenger
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 8
    Publication Date: 2006-09-09
    Description: Chromosomal integration enables human immunodeficiency virus (HIV) to establish a permanent reservoir that can be therapeutically suppressed but not eradicated. Participation of cellular proteins in this obligate replication step is poorly understood. We used intensified RNA interference and dominant-negative protein approaches to show that the cellular transcriptional coactivator lens epithelium-derived growth factor (LEDGF)/p75 (p75) is an essential HIV integration cofactor. The mechanism requires both linkages of a molecular tether that p75 forms between integrase and chromatin. Fractionally minute levels of endogenous p75 are sufficient to enable integration, showing that cellular factors that engage HIV after entry may elude identification in less intensive knockdowns. Perturbing the p75-integrase interaction may have therapeutic potential.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Llano, Manuel -- Saenz, Dyana T -- Meehan, Anne -- Wongthida, Phonphimon -- Peretz, Mary -- Walker, William H -- Teo, Wulin -- Poeschla, Eric M -- New York, N.Y. -- Science. 2006 Oct 20;314(5798):461-4. Epub 2006 Sep 7.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Molecular Medicine Program, Mayo Clinic College of Medicine, Rochester, MN 55905, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16959972" target="_blank"〉PubMed〈/a〉
    Keywords: Adaptor Proteins, Signal Transducing/chemistry/genetics/metabolism/*physiology ; CD4-Positive T-Lymphocytes/metabolism/*virology ; Cell Line ; Chromatin/*metabolism ; HIV Integrase/*metabolism ; HIV-1/*physiology ; Humans ; Intercellular Signaling Peptides and Proteins/metabolism ; RNA Interference ; Recombinant Fusion Proteins/metabolism ; Transcription Factors/chemistry/genetics/metabolism/*physiology ; *Virus Integration ; Virus Replication
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 9
    Publication Date: 2006-07-22
    Description: The surface potential of biological membranes varies according to their lipid composition. We devised genetically encoded probes to assess surface potential in intact cells. These probes revealed marked, localized alterations in the charge of the inner surface of the plasma membrane of macrophages during the course of phagocytosis. Hydrolysis of phosphoinositides and displacement of phosphatidylserine accounted for the change in surface potential at the phagosomal cup. Signaling molecules such as K-Ras, Rac1, and c-Src that are targeted to the membrane by electrostatic interactions were rapidly released from membrane subdomains where the surface charge was altered by lipid remodeling during phagocytosis.〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Yeung, Tony -- Terebiznik, Mauricio -- Yu, Liming -- Silvius, John -- Abidi, Wasif M -- Philips, Mark -- Levine, Tim -- Kapus, Andras -- Grinstein, Sergio -- New York, N.Y. -- Science. 2006 Jul 21;313(5785):347-51.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉Division of Cell Biology, Hepatology, and Nutrition Department, Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16857939" target="_blank"〉PubMed〈/a〉
    Keywords: Animals ; Calcium/metabolism ; Cell Line ; Cell Membrane/*physiology ; Fluorescent Dyes/metabolism ; Hydrophobic and Hydrophilic Interactions ; Immunoglobulin G/immunology ; Ionomycin/pharmacology ; Lipid Bilayers/metabolism ; Liposomes/metabolism ; Macrophages/*physiology ; Membrane Potentials ; Mice ; Molecular Probes/metabolism ; Neuropeptides/metabolism ; Opsonin Proteins ; Peptides/metabolism ; *Phagocytosis ; Phagosomes/physiology ; Phospholipids/analysis/metabolism ; Receptors, Fc/immunology/metabolism ; Static Electricity ; rac GTP-Binding Proteins/metabolism ; rac1 GTP-Binding Protein ; ras Proteins/metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 10
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    American Association for the Advancement of Science (AAAS)
    Publication Date: 2006-04-29
    Description: Mutations in the nuclear structural protein lamin A cause the premature aging syndrome Hutchinson-Gilford progeria (HGPS). Whether lamin A plays any role in normal aging is unknown. We show that the same molecular mechanism responsible for HGPS is active in healthy cells. Cell nuclei from old individuals acquire defects similar to those of HGPS patient cells, including changes in histone modifications and increased DNA damage. Age-related nuclear defects are caused by sporadic use, in healthy individuals, of the same cryptic splice site in lamin A whose constitutive activation causes HGPS. Inhibition of this splice site reverses the nuclear defects associated with aging. These observations implicate lamin A in physiological aging.〈br /〉〈br /〉〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1855250/" target="_blank"〉〈img src="https://static.pubmed.gov/portal/portal3rc.fcgi/4089621/img/3977009" border="0"〉〈/a〉   〈a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1855250/" target="_blank"〉This paper as free author manuscript - peer-reviewed and accepted for publication〈/a〉〈br /〉〈br /〉〈span class="detail_caption"〉Notes: 〈/span〉Scaffidi, Paola -- Misteli, Tom -- Z01 BC010309-07/BC/NCI NIH HHS/ -- Intramural NIH HHS/ -- New York, N.Y. -- Science. 2006 May 19;312(5776):1059-63. Epub 2006 Apr 27.〈br /〉〈span class="detail_caption"〉Author address: 〈/span〉National Cancer Institute (NCI), NIH, Bethesda, MD 20892, USA.〈br /〉〈span class="detail_caption"〉Record origin:〈/span〉 〈a href="http://www.ncbi.nlm.nih.gov/pubmed/16645051" target="_blank"〉PubMed〈/a〉
    Keywords: Aged, 80 and over ; Aging/*physiology ; Cell Line ; Cell Nucleus/pathology ; DNA Damage ; Exons ; Histones/metabolism ; Humans ; Lamin Type A/genetics/*physiology ; Progeria/genetics/pathology ; RNA Splicing/genetics ; Signal Transduction ; Tumor Suppressor Protein p53/genetics/metabolism
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Computer Science , Medicine , Natural Sciences in General , Physics
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