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  • American Geophysical Union  (321)
  • American Chemical Society
  • American Chemical Society (ACS)
  • Public Library of Science
  • 2020-2023  (359)
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  • 1
    Publication Date: 2022-01-07
    Description: The female flowers (“cones”) of the hop plant (Humulus L.) produce compounds that contribute to the flavor and other properties of beer. Hop leaves and cones produce many of the same compounds, which also confer agronomic traits such as insect and disease resistance. Targeted and untargeted ultraperformance liquid chromatography-quadrupole time-of-flight–mass spectrometry with Waters MSE technology (UPLC-QTof-MSE) metabolomics were used to compare leaf phytochemical compositions of greenhouse-grown southwestern American wild Humulus neomexicanus (A. Nelson and Cockerell) Rydb. against a group of commercial hop cultivars consisting of both pure European Humulus lupulus L. and European–North American hybrids. Principal component analysis showed a clear distinction in chemical profiles between the two groups. H. neomexicanus leaves had a significantly higher content of total α acids (p = 4.4 × 10–9), total bitter acids (p = 2.6 × 10–6), cohumulone (p = 1.0 × 10–13), humulone + adhumulone (p = 9.1 × 10–4), and the prenylflavonoids xanthohumol (p = 0.013) and desmethylxanthohumol (p = 0.029) as well as significantly higher densities of glandular trichomes (p = 1.3 × 10–6), the biosynthetic site of those compounds. Most flavonol glycosides measured were also significantly more abundant in H. neomexicanus (p = 1.5 × 10–22 to 0.0027), whereas phenolic acids were consistently, but generally nonsignificantly (p 〉 0.05), more abundant in the cultivars. The higher bitter acid, prenylflavonoid, and flavonol glycoside content of H. neomexicanus leaves may help to confer more favorable insect and disease-resistance properties.
    Type: Article , PeerReviewed
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  • 2
    Publication Date: 2022-01-07
    Description: Marine macroalgae, seaweeds, are exceptionally prolific producers of halogenated natural products. Biosynthesis of halogenated molecules in seaweeds is inextricably linked to reactive oxygen species (ROS) signaling as hydrogen peroxide serves as a substrate for haloperoxidase enzymes that participate in the construction these halogenated molecules. Here, using red macroalga Asparagopsis taxiformis, a prolific producer of the ozone depleting molecule bromoform, we provide the discovery and biochemical characterization of a ROS-producing NAD(P)H oxidase from seaweeds. This discovery was enabled by our sequencing of Asparagopsis genomes, in which we find the gene encoding the ROS-producing enzyme to be clustered with genes encoding bromoform-producing haloperoxidases. Biochemical reconstitution of haloperoxidase activities establishes that fatty acid biosynthesis can provide viable hydrocarbon substrates for bromoform production. The ROS production haloperoxidase enzymology that we describe here advances seaweed biology and biochemistry by providing the molecular basis for decades worth of physiological observations in ROS and halogenated natural product biosyntheses.
    Type: Article , PeerReviewed
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  • 3
    Publication Date: 2022-01-07
    Description: Iron is an indispensable metabolic cofactor in both pro- and eukaryotes, which engenders a natural competition for the metal between bacterial pathogens and their human or animal hosts. Bacteria secrete siderophores that extract Fe3+ from tissues, fluids, cells, and proteins; the ligand gated porins of the Gram-negative bacterial outer membrane actively acquire the resulting ferric siderophores, as well as other iron-containing molecules like heme. Conversely, eukaryotic hosts combat bacterial iron scavenging by sequestering Fe3+ in binding proteins and ferritin. The variety of iron uptake systems in Gram-negative bacterial pathogens illustrates a range of chemical and biochemical mechanisms that facilitate microbial pathogenesis. This document attempts to summarize and understand these processes, to guide discovery of immunological or chemical interventions that may thwart infectious disease.
    Type: Article , PeerReviewed
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  • 4
    Publication Date: 2022-01-07
    Description: Fusarium oxysporum is a destructive root-infecting plant pathogen that causes significant yield losses in many economically important crop species. Hence, a deeper understanding of pathogen infection strategies is needed. With liquid chromatography-tandem mass spectrometry and gas chromatography-time of flight mass spectrometry platforms, we analyzed the metabolic changes in a time-course experiment with Arabidopsis accessions either resistant (Col-0) or susceptible (Ler-0) to isolates of Fusarium oxysporum forma specialis matthioli infection. We showed a concurrent effect of Fusarium-derived polyols and the mycotoxin beauvericin in the suppression of the immune response of susceptible hosts. A significant increase in oxidized glutathione in the resistant host was probably associated with effective reactive oxygen species-mediated resistance responses. Through a combination of targeted and untargeted metabolomics, we demonstrated the concurrent action of several Arabidopsis defense systems as well as the concurrent action of several virulence systems in the fungal attack of susceptible Arabidopsis.
    Type: Article , PeerReviewed
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  • 5
    Publication Date: 2022-01-07
    Description: While thousands of environmental metagenomes have been mined for the presence of novel biosynthetic gene clusters, such computational predictions do not provide evidence of their in vivo biosynthetic functionality. Using fluorescent in situ enzyme assay targeting carrier proteins common to polyketide (PKS) and nonribosomal peptide synthetases (NRPS), we applied fluorescence-activated cell sorting to tunicate microbiome to enrich for microbes with active secondary metabolic capabilities. Single-cell genomics uncovered the genetic basis for a wide biosynthetic diversity in the enzyme-active cells and revealed a member of marine Oceanospirillales harboring a novel NRPS gene cluster with high similarity to phylogenetically distant marine and terrestrial bacteria. Interestingly, this synthase belongs to a larger class of siderophore biosynthetic gene clusters commonly associated with pestilence and disease. This demonstrates activity-guided single-cell genomics as a tool to guide novel biosynthetic discovery.
    Type: Article , PeerReviewed
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  • 6
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Solid Earth 125(6), (2020): e2019JB019239, doi:10.1029/2019JB019239.
    Description: P‐to‐S‐converted waves observed in controlled‐source multicomponent ocean bottom seismometer (OBS) records were used to derive the Vp/Vs structure of Cascadia Basin sediments. We used P‐to‐S waves converted at the basement to derive an empirical function describing the average Vp/Vs of Cascadia sediments as a function of sediment thickness. We derived one‐dimensional interval Vp/Vs functions from semblance velocity analysis of S‐converted intrasediment and basement reflections, which we used to define an empirical Vp/Vs versus burial depth compaction trend. We find that seaward from the Cascadia deformation front, Vp/Vs structure offshore northern Oregon and Washington shows little variability along strike, while the structure of incoming sediments offshore central Oregon is more heterogeneous and includes intermediate‐to‐deep sediment layers of anomalously elevated Vp/Vs. These zones with elevated Vp/Vs are likely due to elevated pore fluid pressures, although layers of high sand content intercalated within a more clayey sedimentary sequence, and/or a higher content of coarser‐grained clay minerals relative to finer‐grained smectite could be contributing factors. We find that the proto‐décollement offshore central Oregon develops within the incoming sediments at a low‐permeability boundary that traps fluids in a stratigraphic level where fluid overpressure exceeds 50% of the differential pressure between the hydrostatic pressure and the lithostatic pressure. Incoming sediments with the highest estimated fluid overpressures occur offshore central Oregon where deformation of the accretionary prism is seaward vergent. Conversely, landward vergence offshore northern Oregon and Washington correlates with more moderate pore pressures and laterally homogeneous Vp/Vs functions of Cascadia Basin sediments.
    Description: This research was funded by National Science Foundation (NSF) Grant OCE‐1657237 to J. P. C, OCE‐1657839 to A. F. A. and S. H., and OCE‐1657737 to S. M. C. Data used in this study were acquired with funding from NSF Grants OCE‐1029305 and OCE‐1249353. Data used in this research were provided by instruments from the Ocean Bottom Seismic Instrument Center (http://obsic.whoi.edu, formerly OBSIP), which is funded by the NSF. OBSIC/OBSIP data are archived at the IRIS Data Management Center (http://www.iris.edu) under network code X6 (https://doi.org/10.7914/SN/X6_2012). Data processing was conducted with Emerson‐Paradigm Software package Echos licensed to Woods Hole Oceanographic Institution under Paradigm Academic Software Program and MATLAB package SeismicLab of the University of Alberta, Canada (http://seismic-lab.physics.ualberta.ca), under GNU General Public License (MATLAB® is a registered trademark of MathWorks).
    Description: 2020-11-28
    Keywords: Vp/Vs ; sediments ; ocean bottom seismometer ; Juan de Fuca plate ; Cascadia
    Repository Name: Woods Hole Open Access Server
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  • 7
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016068, doi:10.1029/2020JC016068.
    Description: Labrador Sea Water (LSW) is a major component of the deep limb of the Atlantic Meridional Overturning Circulation, yet LSW transport pathways and their variability lack a complete description. A portion of the LSW exported from the subpolar gyre is advected eastward along the North Atlantic Current and must contend with the Mid‐Atlantic Ridge before reaching the eastern basins of the North Atlantic. Here, we analyze observations from a mooring array and satellite altimetry, together with outputs from a hindcast ocean model simulation, to estimate the mean transport of LSW across the Charlie‐Gibbs Fracture Zone (CGFZ), a primary gateway for the eastward transport of the water mass. The LSW transport estimated from the 25‐year altimetry record is 5.3 ± 2.9 Sv, where the error represents the combination of observational variability and the uncertainty in the projection of the surface velocities to the LSW layer. Current velocities modulate the interannual to higher‐frequency variability of the LSW transport at the CGFZ, while the LSW thickness becomes important on longer time scales. The modeled mean LSW transport for 1993–2012 is higher than the estimate from altimetry, at 8.2 ± 4.1 Sv. The modeled LSW thickness decreases substantially at the CGFZ between 1996 and 2009, consistent with an observed decline in LSW volume in the Labrador Sea after 1994. We suggest that satellite altimetry and continuous hydrographic measurements in the central Labrador Sea, supplemented by profiles from Argo floats, could be sufficient to quantify the LSW transport at the CGFZ.
    Description: A. G. N. appreciates conversations with Kathy Donohue, Tom Rossby and Lisa Beal, which helped to interpret the results. J. B. P. acknowledges support from NSF through Grant OCE‐1947829. The authors thank all colleagues and ship crew involved in the R/V Meteor cruise M‐82/2 and Maria S. Merian cruise MSM‐21/2. The mooring data presented in this paper were funded by NSF through Grant OCE‐0926656.
    Description: 2021-01-03
    Repository Name: Woods Hole Open Access Server
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  • 8
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 47(3), (2020): e2019GL086703, doi:10.1029/2019GL086703.
    Description: Salt marsh assessments focus on vertical metrics such as accretion or lateral metrics such as open‐water conversion, without exploration of how the dimensions are related. We exploited a novel geospatial data set to explore how elevation is related to the unvegetated‐vegetated marsh ratio (UVVR), a lateral metric, across individual marsh “units” within four estuarine‐marsh systems. We find that elevation scales consistently with the UVVR across systems, with lower elevation units demonstrating more open‐water conversion and higher UVVRs. A normalized elevation‐UVVR relationship converges across systems near the system‐mean elevation and a UVVR of 0.1, a critical threshold identified by prior studies. This indicates that open‐water conversion becomes a dominant lateral instability process at a relatively conservative elevation threshold. We then integrate the UVVR and elevation to yield lifespan estimates, which demonstrate that higher elevation marshes are more resilient to internal deterioration, with an order‐of‐magnitude longer lifespan than predicted for lower elevation marshes.
    Description: This study was supported by the USGS through the Coastal Marine Hazards/Resources Program, the National Park Service through the Natural Resource Preservation Program, and the U.S. Fish and Wildlife Service through the Science Support Partnership. Erika Lentz, Elizabeth Pendleton, Meagan Gonneea, Joel Carr, and two anonymous reviewers provided constructive advice on the study. S.F. was partly supported by US National Science Foundation award 1637630 (PIE LTER), 1832221 (VCR LTER). The geospatial data used in this study are published in the Coastal Wetlands Synthesis Products catalog on ScienceBase (https://www.sciencebase.gov/catalog/item/5b73325ee4b0f5d5787c5ff3).
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research- Biogeosciences 125(4), (2020): e2019JG005158, doi:10.1029/2019JG005158.
    Description: Long‐term soil warming can decrease soil organic matter (SOM), resulting in self‐reinforcing feedback to the global climate system. We investigated additional consequences of SOM reduction for soil water holding capacity (WHC) and soil thermal and hydrological buffering. At a long‐term soil warming experiment in a temperate forest in the northeastern United States, we suspended the warming treatment for 104 days during the summer of 2017. The formerly heated plot remained warmer (+0.39 °C) and drier (−0.024 cm3 H2O cm−3 soil) than the control plot throughout the suspension. We measured decreased SOM content (−0.184 g SOM g−1 for O horizon soil, −0.010 g SOM g−1 for A horizon soil) and WHC (−0.82 g H2O g−1 for O horizon soil, −0.18 g H2O g−1 for A horizon soil) in the formerly heated plot relative to the control plot. Reduced SOM content accounted for 62% of the WHC reduction in the O horizon and 22% in the A horizon. We investigated differences in SOM composition as a possible explanation for the remaining reductions with Fourier transform infrared (FTIR) spectra. We found FTIR spectra that correlated more strongly with WHC than SOM, but those particular spectra did not differ between the heated and control plots, suggesting that SOM composition affects WHC but does not explain treatment differences in this study. We conclude that SOM reductions due to soil warming can reduce WHC and hydrological and thermal buffering, further warming soil and decreasing SOM. This feedback may operate in parallel, and perhaps synergistically, with carbon cycle feedbacks to climate change.
    Description: We would like to acknowledge Jeffery Blanchard, Priya Chowdhury, Kristen DeAngelis, Luiz Dominguez‐Horta, Kevin Geyer, Rachelle Lacroix, Xaiojun Liu, William Rodriguez, and Alexander Truchonand and for assistance with field sampling. We would like to acknowledge Michael Bernard for assistance with field sampling and lab work. We would like to acknowledge Aaron Ellison for statistical consultation. This research was financially supported by the U.S. National Science Foundation's Long Term Ecological Research Program (NSF‐DEB‐0620443 and NSF‐DEB‐1237491), the Long Term Research in Environmental Biology Program (NSF DEB‐1456528) , and the U.S. Department of Energy (DOE‐DE‐SC0005421 and DOE‐DE‐SC0010740). Data used in this study are available from the Harvard Forest Data Archive (Datasets HF018‐03, HF018‐04, and HF018‐13), accessible at https://harvardforest.fas.harvard.edu/harvard‐forest‐data‐archive.
    Description: 2020-10-04
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-25
    Description: Author Posting. © American Geophysical Union, 2020. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Oceans 125(8), (2020): e2020JC016445, doi:10.1029/2020JC016445.
    Description: The Mid‐Atlantic Bight (MAB) Cold Pool is a bottom‐trapped, cold (temperature below 10°C) and fresh (practical salinity below 34) water mass that is isolated from the surface by the seasonal thermocline and is located over the midshelf and outer shelf of the MAB. The interannual variability of the Cold Pool with regard to its persistence time, volume, temperature, and seasonal along‐shelf propagation is investigated based on a long‐term (1958–2007) high‐resolution regional model of the northwest Atlantic Ocean. A Cold Pool Index is defined and computed in order to quantify the strength of the Cold Pool on the interannual timescale. Anomalous strong, weak, and normal years are categorized and compared based on the Cold Pool Index. A detailed quantitative study of the volume‐averaged heat budget of the Cold Pool region (CPR) has been examined on the interannual timescale. Results suggest that the initial temperature and abnormal warming/cooling due to advection are the primary drivers in the interannual variability of the near‐bottom CPR temperature anomaly during stratified seasons. The long persistence of temperature anomalies from winter to summer in the CPR also suggests a potential for seasonal predictability.
    Description: This work was funded by the National Oceanic and Atmospheric Administration through Awards NOAA‐NA‐15OAR4310133 and NOAA‐NA‐13OAR4830233 and the National Science Foundation Awards OCE‐1049088, OCE‐1419584, and OCE‐0961545.
    Description: 2021-02-03
    Keywords: Mid‐Atlantic Bight ; Cold Pool ; continental shelf ; temperature balance ; interannual variability ; near‐bottom temperature
    Repository Name: Woods Hole Open Access Server
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