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  • Blackwell Publishing Ltd  (37,208)
  • Nature Publishing Group  (18,761)
  • International Union of Crystallography (IUCr)
  • Public Library of Science
  • 2020-2023  (36)
  • 1990-1994  (63,119)
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  • 1
    Publication Date: 2022-04-01
    Description: We present a workflow to estimate geostatistical aquifer parameters from pumping test data using the Python package welltestpy. The procedure of pumping test analysis is exemplified for two data sets from the Horkheimer Insel site and from the Lauswiesen site, Germany. The analysis is based on a semi‐analytical drawdown solution from the upscaling approach Radial Coarse Graining, which enables to infer log‐transmissivity variance and horizontal correlation length, beside mean transmissivity, and storativity, from pumping test data. We estimate these parameters of aquifer heterogeneity from type‐curve analysis and determine their sensitivity. This procedure, implemented in welltestpy, is a template for analyzing any pumping test. It goes beyond the possibilities of standard methods, for example, based on Theis' equation, which are limited to mean transmissivity and storativity. A sensitivity study showed the impact of observation well positions on the parameter estimation quality. The insights of this study help to optimize future test setups for geostatistical aquifer analysis and provides guidance for investigating pumping tests with regard to aquifer statistics using the open‐source software package welltestpy.
    Description: Article impact statement: We present a workflow to infer parameters of subsurface heterogeneity from pumping test data exemplified at two sites using welltestpy.
    Description: German Federal Environmental Foundation (DBU) http://dx.doi.org/10.13039/100007636
    Keywords: ddc:551.49
    Language: English
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  • 2
    Publication Date: 2022-04-01
    Description: In designed experiments, different sources of variability and an adequate scale of measurement need to be considered, but not all approaches in common usage are equally valid. In order to elucidate the importance of sources of variability and choice of scale, we conducted an experiment where the effects of biochar and slurry applications on soil properties related to soil fertility were studied for different designs: (a) for a field‐scale sampling design with either a model soil (without natural variability) as an internal control or with composited soils, (b) for a design with a focus on amendment variabilities, and (c) for three individual field‐scale designs with true field replication and a combined analysis representative of the population of loess‐derived soils. Three silty loam sites in Germany were sampled and the soil macroaggregates were crushed. For each design, six treatments (0, 0.15 and 0.30 g slurry‐N kg−1 with and without 30 g biochar kg−1) were applied before incubating the units under constant soil moisture conditions for 78 days. CO2 fluxes were monitored and soils were analysed for macroaggregate yields and associated organic carbon (C). Mixed‐effects models were used to describe the effects. For all soil properties, results for the loess sites differed with respect to significant contributions of fixed effects for at least one site, suggesting the need for a general inclusion of different sites. Analysis using a multilevel model allowed generalizations for loess soils to be made and showed that site:slurry:biochar and site:slurry interactions were not negligible for macroaggregate yields. The use of a model soil as an internal control enabled observation of variabilities other than those related to soils or amendments. Experiments incorporating natural variability in soils or amendments resulted in partially different outcomes, indicating the need to include all important sources of variability. Highlights Effects of biochar and slurry applications were studied for different designs and mixed‐effects models were used to describe the effects. Including an internal control allowed observation of, e.g., methodological and analytical variabilities. The results suggested the need for a general inclusion of different sites. Analysis using a multilevel model allowed generalizations for loess soils. The results indicated the need to include all important sources of variability.
    Keywords: ddc:631.4
    Language: English
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  • 3
    Publication Date: 2022-04-01
    Description: Temperate forest soils are often considered as an important sink for atmospheric carbon (C), thereby buffering anthropogenic CO2 emissions. However, the effect of tree species composition on the magnitude of this sink is unclear. We resampled a tree species common garden experiment (six sites) a decade after initial sampling to evaluate whether forest floor (FF) and topsoil organic carbon (Corg) and total nitrogen (Nt) stocks changed in dependence of tree species (Norway spruce—Picea abies L., European beech—Fagus sylvatica L., pedunculate oak—Quercus robur L., sycamore maple—Acer pseudoplatanus L., European ash—Fraxinus excelsior L. and small‐leaved lime—Tilia cordata L.). Two groups of species were identified in terms of Corg and Nt distribution: (1) Spruce with high Corg and Nt stocks in the FF developed as a mor humus layer which tended to have smaller Corg and Nt stocks and a wider Corg:Nt ratio in the mineral topsoil, and (2) the broadleaved species, of which ash and maple distinguished most clearly from spruce by very low Corg and Nt stocks in the FF developed as mull humus layer, had greater Corg and Nt stocks, and narrow Corg:Nt ratios in the mineral topsoil. Over 11 years, FF Corg and Nt stocks increased most under spruce, while small decreases in bulk mineral soil (esp. in 0–15 cm and 0–30 cm depth) Corg and Nt stocks dominated irrespective of species. Observed decadal changes were associated with site‐related and tree species‐mediated soil properties in a way that hinted towards short‐term accumulation and mineralisation dynamics of easily available organic substances. We found no indication for Corg stabilisation. However, results indicated increasing Nt stabilisation with increasing biomass of burrowing earthworms, which were highest under ash, lime and maple and lowest under spruce. Highlights We studied if tree species differences in topsoil Corg and Nt stocks substantiate after a decade. The study is unique in its repeated soil sampling in a multisite common garden experiment. Forest floors increased under spruce, but topsoil stocks decreased irrespective of species. Changes were of short‐term nature. Nitrogen was most stable under arbuscular mycorrhizal species.
    Description: Deutsche Forschungsgemeinschaff (DFG)
    Keywords: ddc:551.9 ; ddc:631.41
    Language: English
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  • 4
    Publication Date: 2022-10-31
    Description: The statistical properties of seismicity are known to be affected by several factors such as the rheological parameters of rocks. We analysed the earthquake double-couple as a function of the faulting type. Here we show that it impacts the moment tensors of earthquakes: thrust- faulting events are characterized by higher double-couple components with respect to strike- slip- and normal-faulting earthquakes. Our results are coherent with the stress dependence of the scaling exponent of the Gutenberg-Richter law, which is anticorrelated to the double- couple. We suggest that the structural and tectonic control of seismicity may have its origin in the complexity of the seismogenic source marked by the width of the cataclastic damage zone and by the slip of different fault planes during the same seismic event; the sharper and concentrated the slip as along faults, the higher the double-couple. This phenomenon may introduce bias in magnitude estimation, with possible impact on seismic forecasting.
    Description: Published
    Description: 258
    Description: 2T. Deformazione crostale attiva
    Description: JCR Journal
    Keywords: double couple ; damage zone ; different fault type ; seismicity ; tectonics ; fault type ; seismicity ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
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  • 5
    Publication Date: 2022-12-06
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Houstin, A., Zitterbart, D., Winterl, A., Richter, S., Planas-Bielsa, V., Chevallier, D., Ancel, A., Fournier, J., Fabry, B., & Le Bohec, C. Biologging of emperor penguins-attachment techniques and associated deployment performance. PLoS One, 17(8), (2022): e0265849, https://doi.org/10.1371/journal.pone.0265849.
    Description: An increasing number of marine animals are equipped with biologgers, to study their physiology, behaviour and ecology, often for conservation purposes. To minimise the impacts of biologgers on the animals’ welfare, the Refinement principle from the Three Rs framework (Replacement, Reduction, Refinement) urges to continuously test and evaluate new and updated biologging protocols. Here, we propose alternative and promising techniques for emperor penguin (Aptenodytes forsteri) capture and on-site logger deployment that aim to mitigate the potential negative impacts of logger deployment on these birds. We equipped adult emperor penguins for short-term (GPS, Time-Depth Recorder (TDR)) and long-term (i.e. planned for one year) deployments (ARGOS platforms, TDR), as well as juvenile emperor penguins for long-term deployments (ARGOS platforms) in the Weddell Sea area where they had not yet been studied. We describe and qualitatively evaluate our protocols for the attachment of biologgers on-site at the colony, the capture of the animals and the recovery of the devices after deployment. We report unprecedented recaptures of long-term equipped adult emperor penguins (50% of equipped individuals recaptured after 290 days). Our data demonstrate that the traditional technique of long-term attachment by gluing the biologgers directly to the back feathers causes excessive feather breakage and the loss of the devices after a few months. We therefore propose an alternative method of attachment for back-mounted devices. This technique led to successful year-round deployments on 37.5% of the equipped juveniles. Finally, we also disclose the first deployments of leg-bracelet mounted TDRs on emperor penguins. Our findings highlight the importance of monitoring potential impacts of biologger deployments on the animals and the need to continue to improve methods to minimize disturbance and enhance performance and results.
    Description: This study was funded by the Centre Scientifique de Monaco with additional support from the LIA-647 and RTPI-NUTRESS (CSM/CNRS¬-University of Strasbourg), by The Penzance Endowed Fund and The Grayce B. Kerr Fund in Support of Assistant Scientists and by the Deutsche Forschungsgemeinschaft (DFG) grants ZI1525/3-1 in the framework of the priority program “Antarctic research with comparative investigations in Arctic ice areas”. Logistics and field efforts were supported by the Alfred Wegener Institute (AWI) within the framework of the program MARE.
    Repository Name: Woods Hole Open Access Server
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  • 6
    Publication Date: 2022-06-20
    Description: Between 2003-2016, the Greenland ice sheet (GrIS) was one of the largest contributors to sea level rise, as it lost about 255 Gt of ice per year. This mass loss slowed in 2017 and 2018 to about 100 Gt yr−1. Here we examine further changes in rate of GrIS mass loss, by analyzing data from the GRACE-FO (Gravity Recovery and Climate Experiment – Follow On) satellite mission, launched in May 2018. Using simulations with regional climate models we show that the mass losses observed in 2017 and 2018 by the GRACE and GRACE-FO missions are lower than in any other two year period between 2003 and 2019, the combined period of the two missions. We find that this reduced ice loss results from two anomalous cold summers in western Greenland, compounded by snow-rich autumn and winter conditions in the east. For 2019, GRACE-FO reveals a return to high melt rates leading to a mass loss of 223 ± 12 Gt month−1 during the month of July alone, and a record annual mass loss of 532 ± 58 Gt yr−1.
    Repository Name: EPIC Alfred Wegener Institut
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  • 7
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    Nature Publishing Group
    In:  EPIC3Nature Climate Change, Nature Publishing Group, 12(3), pp. 249-255
    Publication Date: 2022-06-20
    Repository Name: EPIC Alfred Wegener Institut
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  • 8
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Weizman, E. N., Tannenbaum, M., Tarrant, A. M., Hakim, O., & Levy, O. Chromatin dynamics enable transcriptional rhythms in the cnidarian Nematostella vectensis. Plos Genetics, 15(11), (2019): e1008397, doi: 10.1371/journal.pgen.1008397.
    Description: In animals, circadian rhythms are driven by oscillations in transcription, translation, and proteasomal degradation of highly conserved genes, resulting in diel cycles in the expression of numerous clock-regulated genes. Transcription is largely regulated through the binding of transcription factors to cis-regulatory elements within accessible regions of the chromatin. Chromatin remodeling is linked to circadian regulation in mammals, but it is unknown whether cycles in chromatin accessibility are a general feature of clock-regulated genes throughout evolution. To assess this, we applied an ATAC-seq approach using Nematostella vectensis, grown under two separate light regimes (light:dark (LD) and constant darkness (DD)). Based on previously identified N. vectensis circadian genes, our results show the coupling of chromatin accessibility and circadian transcription rhythmicity under LD conditions. Out of 180 known circadian genes, we were able to list 139 gene promoters that were highly accessible compared to common promoters. Furthermore, under LD conditions, we identified 259 active enhancers as opposed to 333 active enhancers under DD conditions, with 171 enhancers shared between the two treatments. The development of a highly reproducible ATAC-seq protocol integrated with published RNA-seq and ChIP-seq databases revealed the enrichment of transcription factor binding sites (such as C/EBP, homeobox, and MYB), which have not been previously associated with circadian signaling in cnidarians. These results provide new insight into the regulation of cnidarian circadian machinery. Broadly speaking, this supports the notion that the association between chromatin remodeling and circadian regulation arose early in animal evolution as reflected in this non-bilaterian lineage.
    Description: The research leading for this paper was funded by the Moore Foundation (https://www.moore.org), “Unwinding the Circadian Clock in a Sea Anemone” (Grant #4598) to A.T and O.L. The founders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
    Repository Name: Woods Hole Open Access Server
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  • 9
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Planes, S., Allemand, D., Agostini, S., Banaigs, B., Boissin, E., Boss, E., Bourdin, G., Bowler, C., Douville, E., Flores, J. M., Forcioli, D., Furla, P., Galand, P. E., Ghiglione, J. F., Gilson, E., Lombard, F., Moulin, C., Pesant, S., Poulain, J., Reynaud, S., Romac, S., Sullivan, M. B., Sunagawa, S., Thomas, O. P., Trouble, R., de Vargas, C., Thurber, R. V., Voolstra, C. R., Wincker, P., Zoccola, D., the Tara Pacific Consortium. The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean. Plos Biology, 17(9),(2019): e3000483, doi: 10.1371/journal.pbio.3000483.
    Description: Coral reefs are the most diverse habitats in the marine realm. Their productivity, structural complexity, and biodiversity critically depend on ecosystem services provided by corals that are threatened because of climate change effects—in particular, ocean warming and acidification. The coral holobiont is composed of the coral animal host, endosymbiotic dinoflagellates, associated viruses, bacteria, and other microeukaryotes. In particular, the mandatory photosymbiosis with microalgae of the family Symbiodiniaceae and its consequences on the evolution, physiology, and stress resilience of the coral holobiont have yet to be fully elucidated. The functioning of the holobiont as a whole is largely unknown, although bacteria and viruses are presumed to play roles in metabolic interactions, immunity, and stress tolerance. In the context of climate change and anthropogenic threats on coral reef ecosystems, the Tara Pacific project aims to provide a baseline of the “-omics” complexity of the coral holobiont and its ecosystem across the Pacific Ocean and for various oceanographically distinct defined areas. Inspired by the previous Tara Oceans expeditions, the Tara Pacific expedition (2016–2018) has applied a pan-ecosystemic approach on coral reefs throughout the Pacific Ocean, drawing an east–west transect from Panama to Papua New Guinea and a south–north transect from Australia to Japan, sampling corals throughout 32 island systems with local replicates. Tara Pacific has developed and applied state-of-the-art technologies in very-high-throughput genetic sequencing and molecular analysis to reveal the entire microbial and chemical diversity as well as functional traits associated with coral holobionts, together with various measures on environmental forcing. This ambitious project aims at revealing a massive amount of novel biodiversity, shedding light on the complex links between genomes, transcriptomes, metabolomes, organisms, and ecosystem functions in coral reefs and providing a reference of the biological state of modern coral reefs in the Anthropocene.
    Description: We are keen to thank the commitment of the people and the following institutions for their financial and scientific support that made this singular expedition possible: CNRS, PSL, CSM, EPHE, Genoscope/CEA, Inserm, Université Cote d’Azur, ANR, agnès b., UNESCO-IOC, the Veolia Environment Foundation, Région Bretagne, Serge Ferrari, Billerudkorsnas, Amerisource Bergen Company, Lorient Agglomeration, Oceans by Disney, the Prince Albert II de Monaco Foundation, L’Oréal, Biotherm, France Collectivités, Kankyo Station, Fonds Français pour l’Environnement Mondial (FFEM), Etienne BOURGOIS, and the Tara Ocean Foundation teams and crew. Tara Pacific would not exist without the continuous support of the participating institutes. This study has been conducted using E.U. Copernicus Marine Service Information and Mercator Ocean products. We acknowledged funding from the Investissement d’avenir projects France Génomique (ANR-10-INBS-09) and OCEANOMICS (ANR-11-BTBR-0008). RVT was funded by a Dimensions of Biodiversity NSF grant (#1442306) for this work. SS is supported by the ETH Zurich and Helmut Horten Foundation. FL is supported by Sorbonne Université, Institut Universitaire de France, and the Fondation CA-PCA. Finally, we thank the ANR for funding the project CORALGENE, which will support the work the Tara Pacific program. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
    Repository Name: Woods Hole Open Access Server
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  • 10
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Hopkinson, B. M., King, A. C., Owen, D. P., Johnson-Roberson, M., Long, M. H., & Bhandarkar, S. M. Automated classification of three-dimensional reconstructions of coral reefs using convolutional neural networks. PLoS One, 15(3), (2020): e0230671, doi: 10.1371/journal.pone.0230671.
    Description: Coral reefs are biologically diverse and structurally complex ecosystems, which have been severally affected by human actions. Consequently, there is a need for rapid ecological assessment of coral reefs, but current approaches require time consuming manual analysis, either during a dive survey or on images collected during a survey. Reef structural complexity is essential for ecological function but is challenging to measure and often relegated to simple metrics such as rugosity. Recent advances in computer vision and machine learning offer the potential to alleviate some of these limitations. We developed an approach to automatically classify 3D reconstructions of reef sections and assessed the accuracy of this approach. 3D reconstructions of reef sections were generated using commercial Structure-from-Motion software with images extracted from video surveys. To generate a 3D classified map, locations on the 3D reconstruction were mapped back into the original images to extract multiple views of the location. Several approaches were tested to merge information from multiple views of a point into a single classification, all of which used convolutional neural networks to classify or extract features from the images, but differ in the strategy employed for merging information. Approaches to merging information entailed voting, probability averaging, and a learned neural-network layer. All approaches performed similarly achieving overall classification accuracies of ~96% and 〉90% accuracy on most classes. With this high classification accuracy, these approaches are suitable for many ecological applications.
    Description: This study was funded by grants from the Alfred P. Sloan Foundation (BMH, BR2014-049; https://sloan.org), and the National Science Foundation (MHL, OCE-1657727; https://www.nsf.gov). The funders had no role in the study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • 11
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published inWeber, L., & Apprill, A. Diel, daily, and spatial variation of coral reef seawater microbial communities. PLoS One, 15(3), (2020): e0229442, doi: 10.1371/journal.pone.0229442.
    Description: Reef organisms influence microorganisms within the surrounding seawater, yet the spatial and temporal dynamics of seawater microbial communities located in proximity to corals are rarely investigated. To better understand reef seawater microbial community dynamics over time and space, we collected small-volume seawater samples during the day and night over a 72 hour period from three locations that differed in spatial distance from 5 Porites astreoides coral colonies on a shallow reef in St. John, U.S. Virgin Islands: near-coral (sampled 5 cm horizontally from each colony), reef-depth (sampled 2 m above each colony) and surface seawater (sampled 1 m from the seawater surface). At all time points and locations, we quantified abundances of microbial cells, sequenced small subunit rRNA genes of bacterial and archaeal communities, and measured inorganic nutrient concentrations. Prochlorococcus and Synechococcus cells were consistently elevated at night compared to day and these abundances changed over time, corresponding with temperature, nitrite, and silicate concentrations. During the day, bacterial and archaeal alpha diversity was significantly higher in reef-depth and near-coral seawater compared to the surface seawater, signifying that the reef influences the diversity of the seawater microorganisms. At night, alpha diversity decreased across all samples, suggesting that photosynthesis may favor a more taxonomically diverse community. While Prochlorococcus exhibited consistent temporal rhythmicity, additional taxa were enriched in reef seawater at night compared to day or in reef-depth compared to surface seawater based on their normalized sequence counts. There were some significant differences in nutrient concentrations and cell abundances between reef-depth and near-coral seawater but no clear trends. This study demonstrates that temporal variation supersedes small-scale spatial variation in proximity to corals in reef seawater microbial communities. As coral reefs continue to change in benthic composition worldwide, monitoring microbial composition in response to temporal changes and environmental fluctuations will help discern normal variability from longer lasting changes attributed to anthropogenic stressors and global climate change.
    Description: This work was supported by a National Science Foundation (NSF; https://www.nsf.gov/) Graduate Research Fellowship award to L.Weber. This research was also supported by NSF award OCE-1536782 to A. Mooney, J. Llopiz, and A. Apprill and NSF award OCE-1736288 to A. Apprill. Additionally, this work was supported by the NOAA Cooperative Institutes award NA19OAR4320074 to A.A. and E. Kujawinski and the Andrew W. Mellon Foundation Endowed Fund for Innovative Research to A.A.
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  • 12
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Keya, J. J., Kudoh, H., Kabir, A. M. R., Inoue, D., Miyamoto, N., Tani, T., Kakugo, A., & Shikinaka, K. Radial alignment of microtubules through tubulin polymerization in an evaporating droplet. Plos One, 15(4), (2020): e0231352, doi:10.1371/journal.pone.0231352.
    Description: We report the formation of spherulites from droplets of highly concentrated tubulin solution via nucleation and subsequent polymerization to microtubules (MTs) under water evaporation by heating. Radial alignment of MTs in the spherulites was confirmed by the optical properties of the spherulites observed using polarized optical microscopy and fluorescence microscopy. Temperature and concentration of tubulins were found as important parameters to control the spherulite pattern formation of MTs where evaporation plays a significant role. The alignment of MTs was regulated reversibly by temperature induced polymerization and depolymerization of tubulins. The formation of the MTs patterns was also confirmed at the molecular level from the small angle X-ray measurements. This work provides a simple method for obtaining radially aligned arrays of MTs.
    Description: Fund receiver: Akira Kakugo Grant-in-Aid for Scientific Research on Innovative Areas (Grant Nos. JP24104004 and 18H05423) and a Grant-in-Aid for Scientific Research (A) (Grant No. 18H03673) from kaken. NO - The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript
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  • 13
    Publication Date: 2022-10-14
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Houskeeper, H. F., Rosenthal, I. S., Cavanaugh, K. C., Pawlak, C., Trouille, L., Byrnes, J. E. K., Bell, T. W., & Cavanaugh, K. C. Automated satellite remote sensing of giant kelp at the Falkland Islands (Islas Malvinas). Plos One, 17(1), (2022): e0257933, https://doi.org/10.1371/journal.pone.0257933.
    Description: Giant kelp populations that support productive and diverse coastal ecosystems at temperate and subpolar latitudes of both hemispheres are vulnerable to changing climate conditions as well as direct human impacts. Observations of giant kelp forests are spatially and temporally uneven, with disproportionate coverage in the northern hemisphere, despite the size and comparable density of southern hemisphere kelp forests. Satellite imagery enables the mapping of existing and historical giant kelp populations in understudied regions, but automating the detection of giant kelp using satellite imagery requires approaches that are robust to the optical complexity of the shallow, nearshore environment. We present and compare two approaches for automating the detection of giant kelp in satellite datasets: one based on crowd sourcing of satellite imagery classifications and another based on a decision tree paired with a spectral unmixing algorithm (automated using Google Earth Engine). Both approaches are applied to satellite imagery (Landsat) of the Falkland Islands or Islas Malvinas (FLK), an archipelago in the southern Atlantic Ocean that supports expansive giant kelp ecosystems. The performance of each method is evaluated by comparing the automated classifications with a subset of expert-annotated imagery (8 images spanning the majority of our continuous timeseries, cumulatively covering over 2,700 km of coastline, and including all relevant sensors). Using the remote sensing approaches evaluated herein, we present the first continuous timeseries of giant kelp observations in the FLK region using Landsat imagery spanning over three decades. We do not detect evidence of long-term change in the FLK region, although we observe a recent decline in total canopy area from 2017–2021. Using a nitrate model based on nearby ocean state measurements obtained from ships and incorporating satellite sea surface temperature products, we find that the area of giant kelp forests in the FLK region is positively correlated with the nitrate content observed during the prior year. Our results indicate that giant kelp classifications using citizen science are approximately consistent with classifications based on a state-of-the-art automated spectral approach. Despite differences in accuracy and sensitivity, both approaches find high interannual variability that impedes the detection of potential long-term changes in giant kelp canopy area, although recent canopy area declines are notable and should continue to be monitored carefully.
    Description: This work was funded by the National Aeronautics and Space Administration as part of the Citizen Science for Earth Systems Program (https://earthdata.nasa.gov/esds/competitive-programs/csesp) with grant #80NSSC18M0103 (awarded to JEKB), which also provided salary to HFH, and by the National Science Foundation through the Santa Barbara Coastal Long-Term Environmental Research (https://sbclter.msi.ucsb.edu) program with grants #OCE 0620276 and 1232779. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • 14
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Brandt, P. D., Sturzenegger Varvayanis, S., Baas, T., Bolgioni, A. F., Alder, J., Petrie, K. A., Dominguez, I., Brown, A. M., Stayart, C. A., Singh, H., Van Wart, A., Chow, C. S., Mathur, A., Schreiber, B. M., Fruman, D. A., Bowden, B., Wiesen, C. A., Golightly, Y. M., Holmquist, C. E., Arneman, D., Hall, J. D., Hyman, L. E., Gould, K. L., Chalkley, R., Brennwald, P. J., Layton, R. L. A cross-institutional analysis of the effects of broadening trainee professional development on research productivity. Plos Biology, 19(7), (2021): e3000956, https://doi.org/10.1371/journal.pbio.3000956.
    Description: PhD-trained scientists are essential contributors to the workforce in diverse employment sectors that include academia, industry, government, and nonprofit organizations. Hence, best practices for training the future biomedical workforce are of national concern. Complementing coursework and laboratory research training, many institutions now offer professional training that enables career exploration and develops a broad set of skills critical to various career paths. The National Institutes of Health (NIH) funded academic institutions to design innovative programming to enable this professional development through a mechanism known as Broadening Experiences in Scientific Training (BEST). Programming at the NIH BEST awardee institutions included career panels, skill-building workshops, job search workshops, site visits, and internships. Because doctoral training is lengthy and requires focused attention on dissertation research, an initial concern was that students participating in additional complementary training activities might exhibit an increased time to degree or diminished research productivity. Metrics were analyzed from 10 NIH BEST awardee institutions to address this concern, using time to degree and publication records as measures of efficiency and productivity. Comparing doctoral students who participated to those who did not, results revealed that across these diverse academic institutions, there were no differences in time to degree or manuscript output. Our findings support the policy that doctoral students should participate in career and professional development opportunities that are intended to prepare them for a variety of diverse and important careers in the workforce.
    Description: Funding sources included the Common Fund NIH Director’s Biomedical Research Workforce Innovation Broadening Experiences in Scientific Training (BEST) Award. The following institutional NIH BEST awards (alphabetical by institution) included: DP7OD020322 (Boston University; AFB, ID, BMS, LEH); DP7OD020316 (University of Chicago; CAS); DP7OD018425 (Cornell University; SSV); DP7OD018428 (Virginia Polytechnic Institute; AVW, BB); DP7OD020314 (Rutgers University; JA); DP7OD020315 (University of Rochester; TB); DP7OD018423 (Vanderbilt University; KAP, AMB, KLG, RC); DP7OD020321 (University of California, Irvine; HS, DAF); DP7OD020317 (University of North Carolina, Chapel Hill; PDB, PJB, RLL); DP7 OD018427 (Wayne State University; CSC, AM). National Institutes of Health (NIH) General Medical Sciences - Science of Science Policy Approach to Analyzing and Innovating the Biomedical Research Enterprise (SCISIPBIO) Award (GM-19-011) - 1R01GM140282-01 (University of North Carolina at Chapel Hill; RLL, PDB, PJB).
    Repository Name: Woods Hole Open Access Server
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  • 15
    Publication Date: 2022-05-27
    Description: This paper is not subject to U.S. copyright. The definitive version was published in Castellote, M., Mooney, A., Andrews, R., Deruiter, S., Lee, W.-J., Ferguson, M., & Wade, P. Beluga whale (Delphinapterus leucas) acoustic foraging behavior and applications for long term monitoring. Plos One, 16(11), (2021): e0260485, https://doi.org/10.1371/journal.pone.0260485.
    Description: Cook Inlet, Alaska, is home to an endangered and declining population of 279 belugas (Delphinapterus leucas). Recovery efforts highlight a paucity of basic ecological knowledge, impeding the correct assessment of threats and the development of recovery actions. In particular, information on diet and foraging habitat is very limited for this population. Passive acoustic monitoring has proven to be an efficient approach to monitor beluga distribution and seasonal occurrence. Identifying acoustic foraging behavior could help address the current gap in information on diet and foraging habitat. To address this conservation challenge, eight belugas from a comparative, healthy population in Bristol Bay, Alaska, were instrumented with a multi-sensor tag (DTAG), a satellite tag, and a stomach temperature transmitter in August 2014 and May 2016. DTAG deployments provided 129.6 hours of data including foraging and social behavioral states. A total of 68 echolocation click trains ending in terminal buzzes were identified during successful prey chasing and capture, as well as during social interactions. Of these, 37 click trains were successfully processed to measure inter-click intervals (ICI) and ICI trend in their buzzing section. Terminal buzzes with short ICI (minimum ICI 〈8.98 ms) and consistently decreasing ICI trend (ICI increment range 〈1.49 ms) were exclusively associated with feeding behavior. This dual metric was applied to acoustic data from one acoustic mooring within the Cook Inlet beluga critical habitat as an example of the application of detecting feeding in long-term passive acoustic monitoring data. This approach allowed description of the relationship between beluga presence, feeding occurrence, and the timing of spawning runs by different species of anadromous fish. Results reflected a clear preference for the Susitna River delta during eulachon (Thaleichthys pacificus), Chinook (Oncorhynchus tshawytscha), pink (Oncorhynchus gorbuscha), and coho (Oncorhynchus kisutch) salmon spawning run periods, with increased feeding occurrence at the peak of the Chinook and pink salmon runs.
    Description: Project funding was provided by Georgia Aquarium, the Marine Mammal Laboratory of the Alaska Fisheries Science Center (MML/AFSC). Tagging was funded by the NOAA Fisheries Office of Science and Technology’s Ocean Acoustics Program. DTAG data analysis was funded by the U.S. Marine Mammal Commission grant #16-239. Funding for collecting and analyzing Cook Inlet beluga acoustic data in Susitna Delta was provided by the National Marine Fisheries Service Section 6 Office to the Alaska Department of Fish and Game. This publication is partially funded by the Cooperative Institute for Climate, Ocean, and Ecosystem Studies (CICOES), University of Washington, under NOAA Cooperative Agreement NA15OAR4320063, Contribution No. 2021-1145.
    Repository Name: Woods Hole Open Access Server
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  • 16
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ashjian, C. J., Okkonen, S. R., Campbell, R. G., & Alatalo, P. Lingering Chukchi Sea sea ice and Chukchi Sea mean winds influence population age structure of euphausiids (krill) found in the bowhead whale feeding hotspot near Pt. Barrow, Alaska. Plos One, 16(7), (2021): e0254418, https://doi.org/10.1371/journal.pone.0254418.
    Description: Interannual variability in euphausiid (krill) abundance and population structure and associations of those measures with environmental drivers were investigated in an 11-year study conducted in late August–early September 2005–2015 in offshelf waters (bottom depth 〉 40 m) in Barrow Canyon and the Beaufort Sea just downstream of Distributed Biological Observatory site 5 (DBO5) near Pt. Barrow, Alaska. Statistically-significant positive correlations were observed among krill population structure (proportion of juveniles and adults), the volume of Late Season Melt Water (LMW), and late-spring Chukchi Sea sea ice extent. High proportions of juvenile and adult krill were seen in years with larger volumes of LMW and greater spring sea ice extents (2006, 2009, 2012–2014) while the converse, high proportions of furcilia, were seen in years with smaller volumes of LMW and lower spring sea ice extent (2005, 2007, 2010, 2011, 2015). These different life stage, sea ice and water mass regimes represent integrated advective responses to mean fall and/or spring Chukchi Sea winds, driven by prevailing atmospheric pressure distributions in the two sets of years. In years with high proportions of juveniles and adults, late-spring and preceding-fall winds were weak and variable while in years with high proportions of furcilia, late-spring and preceding-fall winds were strong, easterly and consistent. The interaction of krill life history with yearly differences in the northward transports of krill and water masses along with sea ice retreat determines the population structure of late-summer krill populations in the DBO5 region near Pt. Barrow. Years with higher proportions of mature krill may provide larger prey to the Pt. Barrow area bowhead whale prey hotspot. The characteristics of prey near Pt. Barrow is dependent on krill abundance and size, large-scale environmental forcing, and interannual variability in recruitment success of krill in the Bering Sea.
    Description: This research was supported by the National Science Foundation through grants PLR-1023331 (CJA), OPP-0436131 (CJA), PLR-1022139 (RGC), OPP-0436110 (RGC), PLR-1023446 (SRO), and OPP-043166 (SRO), the National Oceanic and Atmospheric Administration (NOAA) under cooperative agreement NA08OAR4320751 with the University of Alaska (SRO) and cooperative agreements NA17RJ1223 and NA09OAR4320129 with the Woods Hole Oceanographic Institution (CJA), the Bureau of Ocean Energy Management through Interagency Agreement 0106RU39923/M08PG20021 between the National Marine Fisheries Service and MMS/BOEM (CJA, RGC, SRO) and through the National Oceanographic Partnership Program award number N00014-08-1-0311 from the Office of Naval Research to the Woods Hole Oceanographic Institution (CJA, SRO, RGC). Additional support was provided by the Coastal Marine Institute at the University of Alaska (SRO, RGC) and the James M. and Ruth P. Clark Arctic Research Initiative Fund at the Woods Hole Oceanographic Institution (CJA). The participation of the K-12 teachers was supported by the National Science Foundation through the ARMADA program at the University of Rhode Island (2005, 2006) and through the POLARTrec program at the Arctic Research Consortium of the United States (2012).
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  • 17
    Publication Date: 2022-09-27
    Description: Little research attention has been given to validating clusters obtained from the groundwater geochemistry of the waterworks' capture zone with a prevailing lake‐groundwater exchange. To address this knowledge gap, we proposed a new scheme whereby Gaussian finite mixture modeling (GFMM) and Spike‐and‐Slab Bayesian (SSB) algorithms were utilized to cluster the groundwater geochemistry while quantifying the probability of the resulting cluster membership against each other. We applied GFMM and SSB to 13 geochemical parameters collected during different sampling periods at 13 observation points across the Barnim Highlands plateau located in the northeast of Berlin, Germany; this included 10 observation wells, two lakes, and a gallery of drinking production wells. The cluster analysis of GFMM yielded nine clusters, either with a probability ≥0.8, while the SSB produced three hierarchical clusters with a probability of cluster membership varying from 〈0.2 to 〉0.8. The findings demonstrated that the clustering results of GFMM were in good agreement with the classification as per the principal component analysis and Piper diagram. By superimposing the parameter clustering onto the observation clustering, we could identify discrepancies that exist among the parameters of a certain cluster. This enables the identification of different factors that may control the geochemistry of a certain cluster, although parameters of that cluster share a strong similarity. The GFMM results have shown that from 2002, there has been active groundwater inflow from the lakes towards the capture zone. This means that it is necessary to adopt appropriate measures to reverse the inflow towards the lakes.
    Description: Article impact statement: The probability of cluster membership quantified using an algorithm should be validated against another probabilistic‐based classifier.
    Description: Federal Ministry of Education and Research http://dx.doi.org/10.13039/501100002347
    Keywords: ddc:551.9 ; ddc:551.49
    Language: English
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  • 18
    Publication Date: 2022-10-01
    Description: Copper (Cu) is an essential element for plants and microorganisms and at larger concentrations a toxic pollutant. A number of factors controlling Cu dynamics have been reported, but information on quantitative relationships is scarce. We aimed to (i) quantitatively describe and predict soil Cu concentrations (CuAR) in aqua regia considering site‐specific effects and effects of pH, soil organic carbon (SOC) and cation exchange capacity (CEC), and (ii) study the suitability of mixed‐effects modelling and rule‐based models for the analysis of long‐term soil monitoring data. Thirteen uncontaminated long‐term monitoring soil profiles in southern Germany were analysed. Since there was no measurable trend of increasing CuAR concentrations with time in the respective depth ranges of the sites, data from different sampling dates were combined and horizon‐specific regression analyses including model simplifications were carried out for 10 horizons. Fixed‐ and mixed‐effects models with the site as a random effect were useful for the different horizons and significant contributions (either of main effects or interactions) of SOC, CEC and pH were present for 9, 8 and 7 horizons, respectively. Horizon‐specific rule‐based cubist models described the CuAR data similarly well. Validations of cubist models and mixed‐effects models for the CuAR concentrations in A horizons were successful for the given population after random splitting into calibration and validation samples, but not after independent validations with random splitting according to sites. Overall, site, CEC, SOC and pH provide important information for a description of CuAR concentrations using the different regression approaches. Highlights: Information on quantitative relationships for factors controlling Cu dynamics is scarce. Site, CEC, SOC and pH provide important information for a description of Cu concentrations. Validations of cubist models and mixed‐effects models for A horizons were successful for a closed population of sites.
    Description: Bavarian State Ministry of the Environment and Consumer Protection http://dx.doi.org/10.13039/501100010219
    Description: Ministry of Agriculture and Environment Mecklenburg‐Western Pomerania
    Keywords: ddc:631.4
    Language: English
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  • 19
    Publication Date: 2022-09-30
    Description: In recent years, German cities were heavily impacted by pluvial flooding and related damage is projected to increase due to climate change and urbanisation. It is important to ask how to improve urban pluvial flood risk management. To understand the current state of property level adaptation, a survey was conducted in four municipalities that had recently been impacted by pluvial flooding. A hybrid framework based on the Protection Motivation Theory (PMT) and the Protection Action Decision Model (PADM) was used to investigate drivers of adaptive behaviour through both descriptive and regression analyses. Descriptive statistics revealed that participants tended to instal more low‐ and medium‐cost measures than high‐cost measures. Regression analyses showed that coping appraisal increased protection motivation, but that the adaptive behaviour also depends on framing factors, particularly homeownership. We further found that, while threat appraisal solely affects protection motivation and responsibility appraisal affects solely maladaptive thinking, coping appraisal affects both. Our results indicate that PMT is a solid starting point to study adaptive behaviours in the context of pluvial flooding, but we need to go beyond that by, for instance, considering factors of the PADM, such as responsibility, ownership, or respondent age, to fully understand this complex decision‐making process.
    Description: Bundesministerium für Bildung und Forschung http://dx.doi.org/10.13039/501100002347
    Keywords: ddc:551.489 ; ddc:363.34
    Language: English
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  • 20
    Publication Date: 2022-10-04
    Description: Soil aeration is a critical factor for oxygen‐limited subsoil processes, as transport by diffusion and advection is restricted by the long distance to the free atmosphere. Oxygen transport into the soil matrix is highly dependent on its connectivity to larger pore channels like earthworm and root colonised biopores. Here we hypothesize that the soil matrix around biopores represents different connectivity depending on biopore genesis and actual coloniser. We analysed the soil pore system of undisturbed soil core samples around biopores generated or colonised by roots and earthworms and compared them with the pore system of soil, not in the immediacy of a biopore. Oxygen partial pressure profiles and gas relative diffusion was measured in the rhizosphere and drilosphere from the biopore wall into the bulk soil with microelectrodes. The measurements were linked with structural features such as porosity and connectivity obtained from X‐ray tomography and image analysis. Aeration was enhanced in the soil matrix surrounding biopores in comparison to the bulk soil, shown by higher oxygen concentrations and higher relative diffusion coefficients. Biopores colonised by roots presented more connected lateral pores than earthworm colonised ones, which resulted in enhanced aeration of the rhizosphere compared to the drilosphere. This has influenced biotic processes (microbial turnover/mineralization or root respiration) at biopore interfaces and highlights the importance of microstructural features for soil processes and their dependency on the biopore's coloniser.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:631.4
    Language: English
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  • 21
    Publication Date: 2022-08-15
    Description: Anaerobic oxidation of ammonium (anammox) in oxygen minimum zones (OMZs) is a major pathway of oceanic nitrogen loss. Ammonium released from sinking particles has been suggested to fuel this process. During cruises to the Peruvian OMZ in April–June 2017 we found that anammox rates are strongly correlated with the volume of small particles (128–512 µm), even though anammox bacteria were not directly associated with particles. This suggests that the relationship between anammox rates and particles is related to the ammonium released from particles by remineralization. To investigate this, ammonium release from particles was modelled and theoretical encounters of free-living anammox bacteria with ammonium in the particle boundary layer were calculated. These results indicated that small sinking particles could be responsible for ~75% of ammonium release in anoxic waters and that free-living anammox bacteria frequently encounter ammonium in the vicinity of smaller particles. This indicates a so far underestimated role of abundant, slow-sinking small particles in controlling oceanic nutrient budgets, and furthermore implies that observations of the volume of small particles could be used to estimate N-loss across large areas.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 22
    Publication Date: 2022-06-06
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ramirez, G. A., Mara, P., Sehein, T., Wegener, G., Chambers, C. R., Joye, S. B., Peterson, R. N., Philippe, A., Burgaud, G., Edgcomb, V. P., & Teske, A. P. Environmental factors shaping bacterial, archaeal and fungal community structure in hydrothermal sediments of Guaymas Basin, Gulf of California. Plos One, 16(9), (2021): e0256321, https://doi.org/10.1371/journal.pone.0256321.
    Description: The flanking regions of Guaymas Basin, a young marginal rift basin located in the Gulf of California, are covered with thick sediment layers that are hydrothermally altered due to magmatic intrusions. To explore environmental controls on microbial community structure in this complex environment, we analyzed site- and depth-related patterns of microbial community composition (bacteria, archaea, and fungi) in hydrothermally influenced sediments with different thermal conditions, geochemical regimes, and extent of microbial mats. We compared communities in hot hydrothermal sediments (75-100°C at ~40 cm depth) covered by orange-pigmented Beggiatoaceae mats in the Cathedral Hill area, temperate sediments (25-30°C at ~40 cm depth) covered by yellow sulfur precipitates and filamentous sulfur oxidizers at the Aceto Balsamico location, hot sediments (〉115°C at ~40 cm depth) with orange-pigmented mats surrounded by yellow and white mats at the Marker 14 location, and background, non-hydrothermal sediments (3.8°C at ~45 cm depth) overlain with ambient seawater. Whereas bacterial and archaeal communities are clearly structured by site-specific in-situ thermal gradients and geochemical conditions, fungal communities are generally structured by sediment depth. Unexpectedly, chytrid sequence biosignatures are ubiquitous in surficial sediments whereas deeper sediments contain diverse yeasts and filamentous fungi. In correlation analyses across different sites and sediment depths, fungal phylotypes correlate to each other to a much greater degree than Bacteria and Archaea do to each other or to fungi, further substantiating that site-specific in-situ thermal gradients and geochemical conditions that control bacteria and archaea do not extend to fungi.
    Description: This project was supported by collaborative NSF Biological Oceanography grants 1829903 and 1829680 “Hydrothermal fungi in the Guaymas Basin Hydrocarbon Ecosystem” to V. Edgcomb and A. Teske, respectively. Postdoc G. Ramirez and Graduate student C.R. Chambers were supported by NSF Molecular and Cellular Biology grant 1817381 “Next Generation Physiology” and by ARPA-E grant “Mining the Deep Sea for Microbial Ethano- and Propanogenesis”. Sampling in Guaymas Basin was supported by collaborative NSF Biological Oceanography grants 1357238 and 1357360 “Collaborative Research: Microbial carbon cycling and its interaction with sulfur and nitrogen transformations in Guaymas Basin hydrothermal sediments” to A. Teske and S. B. Joye, respectively.
    Repository Name: Woods Hole Open Access Server
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  • 23
    Publication Date: 2022-08-11
    Description: The methanogenic degradation of oil hydrocarbons can proceed through syntrophic partnerships of hydrocarbon-degrading bacteria and methanogenic archaea1,2,3. However, recent culture-independent studies have suggested that the archaeon ‘Candidatus Methanoliparum’ alone can combine the degradation of long-chain alkanes with methanogenesis4,5. Here we cultured Ca. Methanoliparum from a subsurface oil reservoir. Molecular analyses revealed that Ca. Methanoliparum contains and overexpresses genes encoding alkyl-coenzyme M reductases and methyl-coenzyme M reductases, the marker genes for archaeal multicarbon alkane and methane metabolism. Incubation experiments with different substrates and mass spectrometric detection of coenzyme-M-bound intermediates confirm that Ca. Methanoliparum thrives not only on a variety of long-chain alkanes, but also on n-alkylcyclohexanes and n-alkylbenzenes with long n-alkyl (C≥13) moieties. By contrast, short-chain alkanes (such as ethane to octane) or aromatics with short alkyl chains (C≤12) were not consumed. The wide distribution of Ca. Methanoliparum4,5,6 in oil-rich environments indicates that this alkylotrophic methanogen may have a crucial role in the transformation of hydrocarbons into methane.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 24
    Publication Date: 2022-07-26
    Description: Application of farmyard manure (FYM) is common practice to improve physical and chemical properties of arable soil and crop yields. However, studies on effects of FYM application mainly focussed on topsoils, whereas subsoils have rarely been addressed so far. We, therefore, investigated the effects of 36‐year FYM application with different rates of annual organic carbon (OC) addition (0, 469, 938 and 1875 g C m−2 a−1) on OC contents of a Chernozem in 0–30 cm (topsoil) and 35–45 cm (subsoil) depth. We also investigated its effects on soil structure and hydraulic properties in subsoil. X‐ray computed tomography was used to analyse the response of the subsoil macropore system (≥19 μm) and the distribution of particulate organic matter (POM) to different FYM applications, which were related to contents in total OC (TOC) and water‐extractable OC (WEOC). We show that FYM‐C application of 469 g C m−2 a−1 caused increases in TOC and WEOC contents only in the topsoil, whereas rates of ≥938 g C m−2 a−1 were necessary for TOC enrichment also in the subsoil. At this depth, the subdivision of TOC into different OC sources shows that most of the increase was due to fresh POM, likely by the stimulation of root growth and bioturbation. The increase in subsoil TOC went along with increases in macroporosity and macropore connectivity. We neither observed increases in plant‐available water capacity nor in unsaturated hydraulic conductivity. In conclusion, only very high application of FYM over long periods can increase OC content of subsoil at our study site, but this increase is largely based on fresh, easily degradable POM and likely accompanied by high C losses when considering the discrepancy between OC addition rate by FYM and TOC response in soil. Highlights A new image processing procedure to distinguish fresh and decomposed POM. The increase of subsoil C stock based to a large extend on fresh, labile POM. Potential of arable subsoils for long‐term C storage by large FYM application rates is limited. The increase in TOC has no effect on hydraulic properties of the subsoil.
    Description: Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659
    Keywords: ddc:631.4
    Language: English
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  • 25
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Luborsky, J., Barua, A., Edassery, S., Bahr, J. M., & Edassery, S. L. Inflammasome expression is higher in ovarian tumors than in normal ovary. Plos One, 15(1), (2020): e0227081, doi:10.1371/journal.pone.0227081.
    Description: Chronic inflammation fundamentally influences cancer risk and development. A mechanism of chronic inflammation is the formation of inflammasome complexes which results in the sustained secretion of the pro-inflammatory cytokines IL1β and IL18. Inflammasome expression and actions vary among cancers. There is no information on inflammasome expression in ovarian cancer (OvCa). To determine if ovarian tumors express inflammasome components, mRNA and protein expression of NLRP3 (nucleotide-binding domain, leucine-rich repeat family, pyrin domain containing 3), caspase-1, IL1β, and IL18 expression in hen and human OvCa was assessed. Chicken (hen) OvCa a valid model of spontaneous human OvCa. Hens were selected into study groups with or without tumors using ultrasonography; tumors were confirmed by histology, increased cellular proliferation, and expression of immune cell marker mRNA. mRNA expression was higher for hallmarks of inflammasome activity (caspase-1, 5.9x increase, p = 0.04; IL1β, 4x increase, p = 0.04; and IL18, 7.8x increase, p = 0.0003) in hen OvCa compared to normal ovary. NLRP3, caspase-8 and caspase-11 mRNA did not differ significantly between tumor and non-tumor containing ovaries. Similar results occurred for human OvCa. Protein expression by immunohistochemistry paralleled mRNA expression and was qualitatively higher in tumors. Increased protein expression of caspase-1, IL1β, and IL18 occurred in surface epithelium, tumor cells, and immune cells. The aryl hydrocarbon receptor (AHR), a potential tumor suppressor and NLRP3 regulator, was higher in hen (2.4x increase, p = 0.002) and human tumors (1.8x increase, p = 0.038), suggesting a role in OvCa. Collectively, the results indicate that inflammasome expression is associated with hen and human OvCa, although the NLR sensor type remains to be determined.
    Description: This research was made possible by NIH grant NCI R03CA182120 (JL), DOD grant W81XWH-08-1-0203 (JL) and Swim Across America (AB). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
    Repository Name: Woods Hole Open Access Server
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  • 26
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Defne, Z., Aretxabaleta, A. L., Ganju, N. K., Kalra, T. S., Jones, D. K., & Smith, K. E. L. A geospatially resolved wetland vulnerability index: synthesis of physical drivers. Plos One, 15(1), (2020): e0228504, doi:10.1371/journal.pone.0228504.
    Description: Assessing wetland vulnerability to chronic and episodic physical drivers is fundamental for establishing restoration priorities. We synthesized multiple data sets from E.B. Forsythe National Wildlife Refuge, New Jersey, to establish a wetland vulnerability metric that integrates a range of physical processes, anthropogenic impact and physical/biophysical features. The geospatial data are based on aerial imagery, remote sensing, regulatory information, and hydrodynamic modeling; and include elevation, tidal range, unvegetated to vegetated marsh ratio (UVVR), shoreline erosion, potential exposure to contaminants, residence time, marsh condition change, change in salinity, salinity exposure and sediment concentration. First, we delineated the wetland complex into individual marsh units based on surface contours, and then defined a wetland vulnerability index that combined contributions from all parameters. We applied principal component and cluster analyses to explore the interrelations between the data layers, and separate regions that exhibited common characteristics. Our analysis shows that the spatial variation of vulnerability in this domain cannot be explained satisfactorily by a smaller subset of the variables. The most influential factor on the vulnerability index was the combined effect of elevation, tide range, residence time, and UVVR. Tide range and residence time had the highest correlation, and similar bay-wide spatial variation. Some variables (e.g., shoreline erosion) had no significant correlation with the rest of the variables. The aggregated index based on the complete dataset allows us to assess the overall state of a given marsh unit and quickly locate the most vulnerable units in a larger marsh complex. The application of geospatially complete datasets and consideration of chronic and episodic physical drivers represents an advance over traditional point-based methods for wetland assessment.
    Description: This study was part of the Estuarine Physical Response to Storms project (GS2-2D awarded to NKG), supported by the Department of the Interior Hurricane Sandy Recovery program. Support was also provided by the U.S. Geological Survey, Coastal and Marine Hazards/Resources Program. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
    Repository Name: Woods Hole Open Access Server
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  • 27
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Freire, I., Gutner-Hoch, E., Muras, A., Benayahu, Y., & Otero, A. The effect of bacteria on planula-larvae settlement and metamorphosis in the octocoral Rhytisma fulvum fulvum. Plos One, 14(9), (2019): e0223214, doi:10.1371/journal.pone.0223214.
    Description: While increasing evidence supports a key role of bacteria in coral larvae settlement and development, the relative importance of environmentally-acquired versus vertically-transferred bacterial population is not clear. Here we have attempted to elucidate the role of post-brooding-acquired bacteria on the development of planula-larvae of the octocoral Rhytisma f. fulvum, in an in vitro cultivation system employing different types of filtered (FSW) and autoclaved (ASW) seawater and with the addition of native bacteria. A good development of larvae was obtained in polystyrene 6-well cell culture plates in the absence of natural reef substrata, achieving a 60–80% of larvae entering metamorphosis after 32 days, even in bacteria-free seawater, indicating that the bacteria acquired during the brooding period are sufficient to support planulae development. No significant difference in planulae attachment and development was observed when using 0.45 μm or 0.22 μm FSW, although autoclaving the 0.45 μm FSW negatively affected larval development, indicating the presence of beneficial bacteria. Autoclaving the different FSW homogenized the development of the larvae among the different treatments. The addition of bacterial strains isolated from the different FSW did not cause any significant effect on planulae development, although some specific strains of the genus Alteromonas seem to be beneficial for larvae development. Light was beneficial for planulae development after day 20, although no Symbiodinium cells could be observed, indicating either that light acts as a positive cue for larval development or the presence of beneficial phototrophic bacteria in the coral microbiome. The feasibility of obtaining advanced metamorphosed larvae in sterilized water provides an invaluable tool for studying the physiological role of the bacterial symbionts in the coral holobiont and the specificity of bacteria-coral interactions.
    Description: This work was supported by: EU FP7-Research Infrastructure Initiative Assemble (Association of European marine biological laboratories); EU FP7 Project Byefouling (grant agreement no 612717); Xunta de Galicia, Consellería de Cultura, Educación e Ordenación Universitaria (grant number ED431D 2017/22). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • 28
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Andruszkiewicz, E. A., Yamahara, K. M., Closek, C. J., & Boehm, A. B. Quantitative PCR assays to detect whales, rockfish, and common murre environmental DNA in marine water samples of the Northeastern Pacific. Plos One, 15(12), (2020): e0242689, doi:10.1371/journal.pone.0242689.
    Description: Monitoring aquatic species by identification of environmental DNA (eDNA) is becoming more common. To obtain quantitative eDNA datasets for individual species, organism-specific quantitative PCR (qPCR) assays are required. Here, we present detailed methodology of qPCR assay design and testing, including in silico, in vitro, and in vivo testing, and comment on the challenges associated with assay design and performance. We use the presented methodology to design assays for three important marine organisms common in the California Current Ecosystem (CCE): humpback whale (Megaptera novaeangliae), shortbelly rockfish (Sebastes jordani), and common murre (Uria aalge). All three assays have excellent sensitivity and high efficiencies ranging from 92% to 99%. However, specificities of the assays varied from species-specific in the case of common murre, genus-specific for the shortbelly rockfish assay, and broadly whale-specific for the humpback whale assay, which cross-amplified with other two other whale species, including one in a different family. All assays detected their associated targets in complex environmental water samples.
    Description: This work is a contribution to the Marine Biodiversity Observation Network (MBON). The MBON project was supported by NASA grant NNX14AP62A ‘National Marine Sanctuaries as Sentinel Sites for a Demonstration Marine Biodiversity Observation Network (MBON)’ funded under the National Ocean Partnership Program (NOPP RFP NOAA-NOS-IOOS-2014-2003803 in partnership between NOAA, BOEM, and NASA), and the U.S. Integrated Ocean Observing System (IOOS) Program Office.
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  • 29
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Shiotani, T., Mino, S., Sato, W., Nishikawa, S., Yonezawa, M., Sievert, S. M., & Sawabe, T. Nitrosophilus alvini gen. nov., sp. nov., a hydrogen-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal vent in the East Pacific Rise, inferred by a genome-based taxonomy of the phylum "Campylobacterota". Plos One, 15(12), (2020): e0241366, doi:10.1371/journal.pone.0241366.
    Description: A novel bacterium, strain EPR55-1T, was isolated from a deep-sea hydrothermal vent on the East Pacific Rise. The cells were motile rods. Growth was observed at temperatures between 50 and 60°C (optimum, 60°C), at pH values between 5.4 and 8.6 (optimum, pH 6.6) and in the presence of 2.4–3.2% (w/v) NaCl (optimum, 2.4%). The isolate used molecular hydrogen as its sole electron donor, carbon dioxide as its sole carbon source, ammonium as its sole nitrogen source, and thiosulfate, sulfite (0.01 to 0.001%, w/v) or elemental sulfur as its sole sulfur source. Nitrate, nitrous oxide (33%, v/v), thiosulfate, molecular oxygen (0.1%, v/v) or elemental sulfur could serve as the sole electron acceptor to support growth. Phylogenetic analyses based on both 16S rRNA gene sequences and whole genome sequences indicated that strain EPR55-1T belonged to the family Nitratiruptoraceae of the class “Campylobacteria”, but it had the distinct phylogenetic relationship with the genus Nitratiruptor. On the basis of the physiological and molecular characteristics of the isolate, the name Nitrosophilus alvini gen. nov. sp. nov. is proposed, with EPR55-1T as the type strain (= JCM 32893T = KCTC 15925T). In addition, it is shown that “Nitratiruptor labii” should be transferred to the genus Nitrtosophilus; the name Nitrosophilus labii comb. nov. (JCM 34002T = DSM 111345T) is proposed for this organism. Furthermore, 16S rRNA gene-based and genome-based analyses showed that Cetia pacifica is phylogenetically associated with Caminibacter species. We therefore propose the reclassification of Cetia pacifica as Caminibacter pacificus comb. nov. (DSM 27783T = JCM 19563T). Additionally, AAI thresholds for genus classification and the reclassification of subordinate taxa within “Campylobacteria” are also evaluated, based on the analyses using publicly available genomes of all the campylobacterial species.
    Description: This study was partially supported by the JSPS KAKENHI (No. 12J03037 and No. 15H05991), the Takahashi Industrial and Economic Research Foundation, and US National Science Foundation grant OCE-1559198 and the WHOI Investment in Science Fund to S.M.S. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • 30
    Publication Date: 2022-05-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Fire, S. E., Bogomolni, A., DiGiovanni, R. A., Jr., Early, G., Leighfield, T. A., Matassa, K., Miller, G. A., Moore, K. M. T., Moore, M., Niemeyer, M., Pugliares, K., Wang, Z., & Wenzel, F. W. An assessment of temporal, spatial and taxonomic trends in harmful algal toxin exposure in stranded marine mammals from the US New England coast. Plos One, 16(1),(2021): e0243570, https://doi.org/10.1371/journal.pone.0243570.
    Description: Despite a long-documented history of severe harmful algal blooms (HABs) in New England coastal waters, corresponding HAB-associated marine mammal mortality events in this region are far less frequent or severe relative to other regions where HABs are common. This long-term survey of the HAB toxins saxitoxin (STX) and domoic acid (DA) demonstrates significant and widespread exposure of these toxins in New England marine mammals, across multiple geographic, temporal and taxonomic groups. Overall, 19% of the 458 animals tested positive for one or more toxins, with 15% and 7% testing positive for STX and DA, respectively. 74% of the 23 different species analyzed demonstrated evidence of toxin exposure. STX was most prevalent in Maine coastal waters, most frequently detected in common dolphins (Delphinus delphis), and most often detected during July and October. DA was most prevalent in animals sampled in offshore locations and in bycaught animals, and most frequently detected in mysticetes, with humpback whales (Megaptera novaeangliae) testing positive at the highest rates. Feces and urine appeared to be the sample matrices most useful for determining the presence of toxins in an exposed animal, with feces samples having the highest concentrations of STX or DA. No relationship was found between the bloom season of toxin-producing phytoplankton and toxin detection rates, however STX was more likely to be present in July and October. No relationship between marine mammal dietary preference and frequency of toxin detection was observed. These findings are an important part of a framework for assessing future marine mammal morbidity and mortality events, as well as monitoring ecosystem health using marine mammals as sentinel organisms for predicting coastal ocean changes.
    Description: S.F. - NOAA John H. Prescott Marine Mammal Rescue Assistance Grant Program #NA16NMF4390151 S.F. - NOAA John H. Prescott Marine Mammal Rescue Assistance Grant Program #NA17NMF4390082 S.F. - Florida Tech Department of Biological Sciences S.F. - Florida Tech John H. Evans Library Open Access Subvention Fund. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • 31
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Furman, B. L. S., Cauret, C. M. S., Knytl, M., Song, X. Y., Premachandra, T., Ofori-Boateng, C., Jordan, D. C., Horb, M. E., & Evans, B. J. (2020). A frog with three sex chromosomes that co-mingle together in nature: Xenopus tropicalis has a degenerate W and a Y that evolved from a Z chromosome. PLoS Genetics, 16(11), e1009121, doi:10.1371/journal.pgen.1009121.
    Description: In many species, sexual differentiation is a vital prelude to reproduction, and disruption of this process can have severe fitness effects, including sterility. It is thus interesting that genetic systems governing sexual differentiation vary among—and even within—species. To understand these systems more, we investigated a rare example of a frog with three sex chromosomes: the Western clawed frog, Xenopus tropicalis. We demonstrate that natural populations from the western and eastern edges of Ghana have a young Y chromosome, and that a male-determining factor on this Y chromosome is in a very similar genomic location as a previously known female-determining factor on the W chromosome. Nucleotide polymorphism of expressed transcripts suggests genetic degeneration on the W chromosome, emergence of a new Y chromosome from an ancestral Z chromosome, and natural co-mingling of the W, Z, and Y chromosomes in the same population. Compared to the rest of the genome, a small sex-associated portion of the sex chromosomes has a 50-fold enrichment of transcripts with male-biased expression during early gonadal differentiation. Additionally, X. tropicalis has sex-differences in the rates and genomic locations of recombination events during gametogenesis that are similar to at least two other Xenopus species, which suggests that sex differences in recombination are genus-wide. These findings are consistent with theoretical expectations associated with recombination suppression on sex chromosomes, demonstrate that several characteristics of old and established sex chromosomes (e.g., nucleotide divergence, sex biased expression) can arise well before sex chromosomes become cytogenetically distinguished, and show how these characteristics can have lingering consequences that are carried forward through sex chromosome turnovers.
    Description: This work was supported by the Natural Science and Engineering Research Council of Canada (RGPIN-2017-05770) (BJE), Resource Allocation Competition awards from Compute Canada (BJE), the Whitman Center Fellowship Program at the Marine Biological Laboratory (BJE), the Museum of Comparative Zoology at Harvard University (BJE), and National Institutes of Health grants R01-HD084409 (MEH) and P40-OD010997 (MEH). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • 32
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Leray, M., Wilkins, L. G. E., Apprill, A., Bik, H. M., Clever, F., Connolly, S. R., De Leon, M. E., Duffy, J. E., Ezzat, L., Gignoux-Wolfsohn, S., Herre, E. A., Kaye, J. Z., Kline, D. I., Kueneman, J. G., McCormick, M. K., McMillan, W. O., O’Dea, A., Pereira, T. J., Petersen, J. M., Petticord, D. F., Torchin, M. E., Thurber, R. V., Videvall, E., Wcislo, W. T., Yuen, B., Eisen, J. A. . Natural experiments and long-term monitoring are critical to understand and predict marine host-microbe ecology and evolution. Plos Biology, 19(8), (2021): e3001322, https://doi.org/10.1371/journal.pbio.3001322.
    Description: Marine multicellular organisms host a diverse collection of bacteria, archaea, microbial eukaryotes, and viruses that form their microbiome. Such host-associated microbes can significantly influence the host’s physiological capacities; however, the identity and functional role(s) of key members of the microbiome (“core microbiome”) in most marine hosts coexisting in natural settings remain obscure. Also unclear is how dynamic interactions between hosts and the immense standing pool of microbial genetic variation will affect marine ecosystems’ capacity to adjust to environmental changes. Here, we argue that significantly advancing our understanding of how host-associated microbes shape marine hosts’ plastic and adaptive responses to environmental change requires (i) recognizing that individual host–microbe systems do not exist in an ecological or evolutionary vacuum and (ii) expanding the field toward long-term, multidisciplinary research on entire communities of hosts and microbes. Natural experiments, such as time-calibrated geological events associated with well-characterized environmental gradients, provide unique ecological and evolutionary contexts to address this challenge. We focus here particularly on mutualistic interactions between hosts and microbes, but note that many of the same lessons and approaches would apply to other types of interactions.
    Description: Financial support for the workshop was provided by grant GBMF5603 (https://doi.org/10.37807/GBMF5603) from the Gordon and Betty Moore Foundation (W.T. Wcislo, J.A. Eisen, co-PIs), and additional funding from the Smithsonian Tropical Research Institute and the Office of the Provost of the Smithsonian Institution (W.T. Wcislo, J.P. Meganigal, and R.C. Fleischer, co-PIs). JP was supported by a WWTF VRG Grant and the ERC Starting Grant 'EvoLucin'. LGEW has received funding from the European Union’s Framework Programme for Research and Innovation Horizon 2020 (2014-2020) under the Marie Sklodowska-Curie Grant Agreement No. 101025649. AO was supported by the Sistema Nacional de Investigadores (SENACYT, Panamá). A. Apprill was supported by NSF award OCE-1938147. D.I. Kline, M. Leray, S.R. Connolly, and M.E. Torchin were supported by a Rohr Family Foundation grant for the Rohr Reef Resilience Project, for which this is contribution #2. This is contribution #85 from the Smithsonian’s MarineGEO and Tennenbaum Marine Observatories Network. T
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  • 33
    Publication Date: 2022-05-26
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Lagache, T., Hanson, A., Perez-Ortega, J. E., Fairhall, A., & Yuste, R. Tracking calcium dynamics from individual neurons in behaving animals. Plos Computational Biology, 17(10), (2021): e1009432, https://doi.org/10.1371/journal.pcbi.1009432.
    Description: Measuring the activity of neuronal populations with calcium imaging can capture emergent functional properties of neuronal circuits with single cell resolution. However, the motion of freely behaving animals, together with the intermittent detectability of calcium sensors, can hinder automatic monitoring of neuronal activity and their subsequent functional characterization. We report the development and open-source implementation of a multi-step cellular tracking algorithm (Elastic Motion Correction and Concatenation or EMC2) that compensates for the intermittent disappearance of moving neurons by integrating local deformation information from detectable neurons. We demonstrate the accuracy and versatility of our algorithm using calcium imaging data from two-photon volumetric microscopy in visual cortex of awake mice, and from confocal microscopy in behaving Hydra, which experiences major body deformation during its contractions. We quantify the performance of our algorithm using ground truth manual tracking of neurons, along with synthetic time-lapse sequences, covering a wide range of particle motions and detectability parameters. As a demonstration of the utility of the algorithm, we monitor for several days calcium activity of the same neurons in layer 2/3 of mouse visual cortex in vivo, finding significant turnover within the active neurons across days, with only few neurons that remained active across days. Also, combining automatic tracking of single neuron activity with statistical clustering, we characterize and map neuronal ensembles in behaving Hydra, finding three major non-overlapping ensembles of neurons (CB, RP1 and RP2) whose activity correlates with contractions and elongations. Our results show that the EMC2 algorithm can be used as a robust and versatile platform for neuronal tracking in behaving animals.
    Description: R.Y. was supported by the NSF (CRCNS 1822550), the NEI (R01EY011787), the NIMH (R01MH115900), and Vannevar Bush Faculty Award (ONR N000142012828). T.L. was supported by the Fondation pour la Recherche Médicale (https://www.frm.org/) and the Philippe Foundation (https://www.philippefoundation.org/). A.H. was supported by the NIMH (T32MH018870). J.P.-O. was supported by the CONACYT (CVU365863). ALF was supported by NSF (CRCNS 1822550), the Simons Foundation Collaboration for the Global Brain (542975SPI) and the Weill NeuroHub (https://www.weillneurohub.org/).
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  • 34
    Publication Date: 2022-05-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kuehn, E., Stockinger, A. W., Girard, J., Raible, F., & Özpolat, B. D. A scalable culturing system for the marine annelid Platynereis dumerilii. Plos One, 14(12), (2019): e0226156, doi: 10.1371/journal.pone.0226156.
    Description: Platynereis dumerilii is a marine segmented worm (annelid) with externally fertilized embryos and it can be cultured for the full life cycle in the laboratory. The accessibility of embryos and larvae combined with the breadth of the established molecular and functional techniques has made P. dumerilii an attractive model for studying development, cell lineages, cell type evolution, reproduction, regeneration, the nervous system, and behavior. Traditionally, these worms have been kept in rooms dedicated for their culture. This allows for the regulation of temperature and light cycles, which is critical to synchronizing sexual maturation. However, regulating the conditions of a whole room has limitations, especially if experiments require being able to change culturing conditions. Here we present scalable and flexible culture methods that provide ability to control the environmental conditions, and have a multi-purpose culture space. We provide a closed setup shelving design with proper light conditions necessary for P. dumerilii to mature. We also implemented a standardized method of feeding P. dumerilii cultures with powdered spirulina which relieves the ambiguity associated with using frozen spinach, and helps standardize nutrition conditions across experiments and across different labs. By using these methods, we were able to raise mature P. dumerilii, capable of spawning and producing viable embryos for experimentation and replenishing culture populations. These methods will allow for the further accessibility of P. dumerilii as a model system, and they can be adapted for other aquatic organisms.
    Description: BDO received funding from Hibbitt Startup Funds. FR received funding from projects P30035, and I2972, by Austrian Science Fund (FWF). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • 35
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Pan, Y., Ballance, H., Meng, H., Gonzalez, N., Kim, S., Abdurehman, L., York, B., Chen, X., Schnytzer, Y., Levy, O., Dacso, C. C., McClung, C. A., O'Malley, B. W., Liu, S., & Zhu, B. 12-h clock regulation of genetic information flow by XBP1s. Plos Biology, 18(1), (2020): e3000580, doi:10.1371/journal.pbio.3000580.
    Description: Our group recently characterized a cell-autonomous mammalian 12-h clock independent from the circadian clock, but its function and mechanism of regulation remain poorly understood. Here, we show that in mouse liver, transcriptional regulation significantly contributes to the establishment of 12-h rhythms of mRNA expression in a manner dependent on Spliced Form of X-box Binding Protein 1 (XBP1s). Mechanistically, the motif stringency of XBP1s promoter binding sites dictates XBP1s’s ability to drive 12-h rhythms of nascent mRNA transcription at dawn and dusk, which are enriched for basal transcription regulation, mRNA processing and export, ribosome biogenesis, translation initiation, and protein processing/sorting in the Endoplasmic Reticulum (ER)-Golgi in a temporal order consistent with the progressive molecular processing sequence described by the central dogma information flow (CEDIF). We further identified GA-binding proteins (GABPs) as putative novel transcriptional regulators driving 12-h rhythms of gene expression with more diverse phases. These 12-h rhythms of gene expression are cell autonomous and evolutionarily conserved in marine animals possessing a circatidal clock. Our results demonstrate an evolutionarily conserved, intricate network of transcriptional control of the mammalian 12-h clock that mediates diverse biological pathways. We speculate that the 12-h clock is coopted to accommodate elevated gene expression and processing in mammals at the two rush hours, with the particular genes processed at each rush hour regulated by the circadian and/or tissue-specific pathways.
    Description: This study was supported by the American Diabetes Association junior faculty development award 1-18-JDF-025 to B.Z., by funding from National Institute of Health HD07879 and 1P01DK113954 to B.W.O, by funding from National Science Foundation award 1703170 to C.C.D. and B.Z., and by funding from Brockman Foundation to C.C.D and B.W.O. This work was further supported by the UPMC Genome Center with funding from UPMC’s Immunotherapy and Transplant Center. This research was supported in part by the University of Pittsburgh Center for Research Computing through the resources provided. Research reported in this publication was further supported by the National Institute of Diabetes And Digestive And Kidney Diseases of the National Institutes of Health under award number P30DK120531 to Pittsburgh Liver Research Center, in which both S.L. and B.Z. are members. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
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  • 36
    Publication Date: 2022-05-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Johnson, M. D., Fox, M. D., Kelly, E. L. A., Zgliczynski, B. J., Sandin, S. A., & Smith, J. E. Ecophysiology of coral reef primary producers across an upwelling gradient in the tropical central Pacific. Plos One, 15(2), (2020): e0228448, doi:10.1371/journal.pone.0228448.
    Description: Upwelling is an important source of inorganic nutrients in marine systems, yet little is known about how gradients in upwelling affect primary producers on coral reefs. The Southern Line Islands span a natural gradient of inorganic nutrient concentrations across the equatorial upwelling region in the central Pacific. We used this gradient to test the hypothesis that benthic autotroph ecophysiology is enhanced on nutrient-enriched reefs. We measured metabolism and photophysiology of common benthic taxa, including the algae Porolithon, Avrainvillea, and Halimeda, and the corals Pocillopora and Montipora. We found that temperature (27.2–28.7°C) was inversely related to dissolved inorganic nitrogen (0.46–4.63 μM) and surface chlorophyll a concentrations (0.108–0.147 mg m-3), which increased near the equator. Contrary to our prediction, ecophysiology did not consistently track these patterns in all taxa. Though metabolic rates were generally variable, Porolithon and Avrainvillea photosynthesis was highest at the most productive and equatorial island (northernmost). Porolithon photosynthetic rates also generally increased with proximity to the equator. Photophysiology (maximum quantum yield) increased near the equator and was highest at northern islands in all taxa. Photosynthetic pigments also were variable, but chlorophyll a and carotenoids in Avrainvillea and Montipora were highest at the northern islands. Phycobilin pigments of Porolithon responded most consistently across the upwelling gradient, with higher phycoerythrin concentrations closer to the equator. Our findings demonstrate that the effects of in situ nutrient enrichment on benthic autotrophs may be more complex than laboratory experiments indicate. While upwelling is an important feature in some reef ecosystems, ancillary factors may regulate the associated consequences of nutrient enrichment on benthic reef organisms.
    Description: This work was supported by funding from the Moore Family Foundation, the Gordon and Betty Moore Foundation, the Scripps family, and anonymous donors. The funders had no role in study design, data collection and analysis, or preparation of the manuscript.
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  • 37
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of metamorphic geology 9 (1991), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
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  • 38
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of metamorphic geology 9 (1991), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract Specimen thickness is the main experimental factor controlling the results of illite crystallinity (IC) or crystallite size measurements on sedimentation slides. Different values obtained from thick and thin preparations are due to grain-size gradation effects, which may exclude larger and higher ordered grains from contributing to the diffraction. Orientation effects control the measured peak intensity. The change from poor particle orientation in thick slides to high orientation in very thin slides is marked by an increase in specimen density, diminishing non-basal reflections, and by a strong increase in peak intensity. A plateau with constant peak breadths is observed if thin slides of well ordered, platy illites are used. A similar plateau can be recognized for thick preparations of specimens from less ordered materials, but not from well ordered ones. Therefore, it is suggested that IC is determined on very thin sedimentation slides with a thickness of 0.25 mg/cm2 or less. Ultrasonic and H2O2 treatments enhance the degree of particle orientation by destruction of grain aggregates and organic compounds, leading to smaller peak breadths and higher intensities.
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  • 39
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of metamorphic geology 9 (1991), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract Five basalt samples from the Point Sal ophiolite, California, were examined using HRTEM and AEM in order to compare observations with interpretations of XRD patterns and microprobe analyses. XRD data from ethylene-glycol-saturated samples indicate the following percentages of chlorite in mixed-layer chlorite–smectite identified for each specimen: (i) L2036 ± 50%, (ii) L2035 ± 70 and 20%, (iii) 1A-13 ± 70%, (iv) 1B-42 ± 70%, and (v) 1B-55 = 100%. Detailed electron microprobe analyses show that ‘chlorite’analyses with high Si, K, Na and Ca contents are the result of interlayering with smectite-like layers. The Fe/(Fe + Mg) ratios of mixed-layer phyllosilicates from Point Sal samples are influenced by the bulk rock composition, not by the percentage of chlorite nor the structure of the phyllosilicate.Measurements of lattice-fringe images indicate that both smectite and chlorite layers are present in the Point Sal samples in abundances similar to those predicted with XRD techniques and that regular alternation of chlorite and smectite occurs at the unit-cell scale. Both 10- and 14-Å layers were recorded with HRTEM and interpreted to be smectite and chlorite, respectively. Regular alternation of chlorite and smectite (24-Å periodicity) occurs in upper lava samples L2036 and 1A-13, and lower lava sample 1B-42 for as many as seven alternations per crystallite with local layer mistakes. Sample L2035 shows disordered alternation of chlorite and smectite, with juxtaposition of smectite-like layers, suggesting that randomly interlayered chlorite (〈0.5)–smectite exists. Images of lower lava sample 1B-55 show predominantly 14-Å layers. Units of 24 Å tend to cluster in what may otherwise appear to be disordered mixtures, suggesting the existence of a corrensite end-member having thermodynamic significance.
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  • 40
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Publishing Ltd
    Journal of metamorphic geology 9 (1991), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract White mica crystallinity studies have been carried out on 90 samples of mudrocks, six of spotted slate, and five of accretionary lapilli tuff from the area around the Berwyn Hills, North Wales. Strain was measured for some of the spotted slate and tuff samples. The metamorphic grade increases from southeast to northwest, with values of the Kübler index varying from 0.64 to 0.20Δ2θ. Metamorphic zonal boundaries follow the strike of bedding and cleavage, but crystallinity values increase into stratigraphically younger rocks on the northwest side of the Berwyn Dome. This effect is attributed mainly to a rapid increase in the thickness of synmetamorphic overburden to the northwest, comprising exposed Silurian turbidites and inferred Lower Devonian non-marine sediments. Strain variations have a more local influence on crystallinity, and lateral variations in the contemporary geothermal gradient cannot be ruled out. However, only with unrealistically high gradients would the need for a thick Lower Devonian component to the overburden be removed. This reasoning implies that the metamorphic peak was coeval with the Acadian (late Caledonian) event, rather than with an early diastathermal event.
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  • 41
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    Journal of metamorphic geology 9 (1991), S. 0 
    ISSN: 1525-1314
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  • 42
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    Journal of metamorphic geology 9 (1991), S. 0 
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    Topics: Geosciences
    Notes: Abstract Illite crystallinity (IC) measurements, determination of the proportion of 2M mica-polytypes and organic-matter reflectance measurements establish regional diagenetic/low-grade metamorphic trends for the Taconian and Acadian belts of Gaspé Peninsula.IC varies as a function of many factors besides maximum burial temperature and heating time. Correlation between IC and %2M illite polytypes for the Fortin Group and Temiscouata Formation suggests (i) that the amount of high-grade detrital mica in the samples is low, and (ii) that IC can be used with some confidence as an estimator of regional thermal maturation levels. Correlation of these parameters with available organic reflectance values further supports this assumption. The illites of the Temiscouata and western Fortin groups are mostly phengitic in composition, whereas in the eastern outcrop belt they are more Mg- and Fe-rich (celadonitic), but generally also of lower grade and lower 2M content. The d(060) values for illites measured on the unorientated 〈2-μm fraction of samples fall between 1.502 and 1.503 Å (range: 1.500–1.504 Å), indicating relatively low octahedral occupancy by Mg and Fe (between one-fifth and one-third of the available spaces). Pyrophyllite and paragonite were not detected. Chlorites are Fe-rich and ripidolitic.The IC map for the Acadian belt of the peninsula displays general congruence between IC contours (2200 sample points) and structural trends for the 27,000-km2 area. The highest grades (anchimetamorphic) are associated with the oldest rocks (Honorat and Matapedia groups) exposed in the cores of major anticlines. Anchimetamorphic grades associated with the western outcrop belt of the Lower Devonian Fortin Group require 7–8 km of subsidence to accommodate sufficient thickness of overlying younger rocks (on top of 4–5 km of Fortin Group deep-water clastics) to explain the grades in terms of burial metamorphism assuming a geothermal gradient of 30° C km−1. The lowest-grade diagenetic rocks occupy a large area in the northeastern part of the peninsula, smaller areas in the northwestern part of the Acadian belt, in the centre of Chaleurs Bay synclinorium, and in the Ordovician Mictaw Group. The contact between the Taconian and Acadian belt is marked by a distinct maturation discontinuity. The Grand Pabos fault juxtaposes rocks of contrasting maturation levels (Matapedia Group against Fortin Group) in the west, but shows no maturation offset further east in the Honorat Group. The fault zone limiting the Fortin Group in the north is also associated with a major IC jump.
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  • 43
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    Journal of metamorphic geology 9 (1991), S. 0 
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  • 44
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    Journal of metamorphic geology 9 (1991), S. 0 
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    Topics: Geosciences
    Notes: Abstract The assemblage muscovite-quartz-staurolite-aluminium silicate-biotite-garnet-chlorite with H2O (SABGC assemblage) is invariant in the K2O-FeO-MgO-Al2O3-SiO2-H2O (KFMASH) system. Such five-phase AFM assemblages should be absent in nature, but reported occurrences from at least ten localities suggest that either the assemblage internally controls μH2O or non-KFMASH components stabilize one or more of the phases.Least-squares regression analysis of minerals from South Royalton and Gassetts, Vermont, USA, demonstrates that subsets of the minerals in single SABGC assemblages from both localities are related by balanced reactions involving water. These results are consistent with the interpretation that the subassemblages fixed μH2O at an arbitrary, specified pressure and temperature. Balanced dehydration reactions also may be written between minerals in the SABGC assemblages and four-phase assemblages from the same outcrops interpreted to have equilibrated at the same pressures and temperatures as the five-phase assemblages. These results suggest that different specimens from the same outcrops equilibrated at different values of μH2O, supporting the conclusion that μH2O was not controlled externally. We could not demonstrate internal control of fo2 using measured mineral compositions because oxygen balance occurred in all reactions derived by regression.Regression analysis of published mineral compositions from New Mexico failed to identify balanced reactions involving water or oxygen either among the phases in a single SABGC assemblage or between SABGC and nearby four-phase assemblages. These results demonstrate that neither μH2O nor fo2 were fixed by the SABGC assemblages at these localities, and permit the interpretations that the assemblages were stabilized by the non-KFMASH components Na or Ca and that μH2O and fo2 were controlled externally.
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  • 45
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    Journal of metamorphic geology 9 (1991), S. 0 
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    Topics: Geosciences
    Notes: Abstract Albite porphyroblasts are widely distributed in pelitic and semi-pelitic schists of the Fleur de Lys Supergroup, western Newfoundland. Textures and mineral assemblages indicate that albite grew during nearly isothermal decompression from P-T conditions of about 500° C, 9 kbar, to conditions of 550° C, 6.5 kbar. Three compositional varieties of albite-bearing schists, here termed PMAQ (paragonite-muscovite-albite-quartz), MMAQ (microcline-muscovite-albite-quartz), and PMMQ (paragonite-muscovite-margarite-quartz), can be distinguished on the basis of pre-porphyroblast mineral assemblages. Analysis of these assemblages in terms of the composition of the coexisting fluid [log a(Na+/H+) versus log a(K+/H+)] suggests that, as pressure and temperature changed, the stability field of albite expanded at the expense of coexisting matrix phyllosilicates. This promoted growth of albite on pre-existing or newly formed nuclei. Late oligoclase in PMAQ and PMMQ samples is associated with replacement of matrix garnet by plagioclase + mica ° Chlorite, particularly in strongly sheared samples.
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  • 46
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    Journal of metamorphic geology 9 (1991), S. 0 
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    Topics: Geosciences
    Notes: Abstract Spinel-quartz-cordierite and spinel-quartz are found as relic prograde assemblages in Fe-rich granulites from the Araku area, Eastern Ghats belt, India. Subsequent reactions produced orthopyroxene + sillimanite in the former association and garnet + sillimanite in the latter. The first reaction is univariant in the FMAS system, but is trivariant in the present case because of the presence of Zn and Fe3+ in spinel. The second reaction also has high variance because of Zn and Fe3+, but also because of the presence of Ca in garnet. Thermobarometry shows that the metamorphic conditions were approximately 950° C and 8.5 kbar and the fo2 was near the NNO buffer. In Fe-rich bulk compositions and low-P-high-T conditions of metamorphism, two of the univariant reactions around the invariant point [Sa], namely (Sa, Hy) and (Sa, Cd), change topology due to reverse partitioning of Fe-Mg between coexisting garnet and spinel. An alternative partial petrogenetic grid in the system FMAS is constructed for such conditions and is applied satisfactorily to several sapphirine-free spinel granulites. It is shown that bulk composition (XFe and Zn) exerts greater control on the stability of spinel + quartz than fo2. The effect of the presence of Zn and Fe3+ in spinel on the proposed grid is evaluated. Reaction textures in the Araku spinel granulites can be explained from the petrogenetic grid as due to near-isobaric cooling.
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  • 47
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    Journal of metamorphic geology 9 (1991), S. 0 
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    Topics: Geosciences
    Notes: The impure marbles of the internal Sesia-Lanzo Zone underwent a multi-stage metamorphic evolution of Alpine age and retain early-Alpine eclogitic assemblages, partially recrystallized under blueschist to greenschist facies conditions. These high-P assemblages consist of carbonates, phengite, quartz, omphacite, grossular-rich (locally spessartinic) garnet, zoisite and Al-rich titanite. Retrogressive stages are characterized by the growth of glaucophane, paragonite, phlogopite, tremolite and albite. Halogen-rich biotite and amphibole are also present. P-T estimates of the early-Alpine metamophism have been calculated from these unique high-P assemblages, in order to test the applicability of some calibrations to impure carbonate systems. In particular, some Gt-Cpx calibrations and the phengite geobarometer give results (T= 575 ± 45° C at 15 kbar for the eclogitic climax and T≤ 500° C at PH2O ≤ 9 kbar for early-Alpine retrogressive stages) which are within the range obtained from the surrounding lithologies.Phase relationships in P-T-XCO2 space indicate that mineral assemblages in the impure marbles coexisted with H2O-rich fluids (XCO2 〈0.03) during their entire Alpine evolution.
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  • 48
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    Journal of metamorphic geology 8 (1990), S. 0 
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    Topics: Geosciences
    Notes: Analysis of the precision of the illite ‘crystallinity’technique shows that machine errors are 〈5%, while intra- and inter-sample errors are variable but are up to 12% and 14%, respectively (1σ). Consideration of this error analysis shows that the isocryst approach, which involves close contouring (e.g. 0.03 Δ2°) of illite ‘crystallinity’data, has a very low degree of confidence (〈0.5) and thus is not regarded as statistically valid. If contouring is to be undertaken with a high degree of confidence (〉0.8) it is necessary that contours should be at intervals of 0.1 ΔΘ2°, which is equivalent to subdivision of the anchizone into upper and lower units. Where previous interpretations have relied upon an isocryst method of contouring at less than 0.1 ΔΘ2° the conclusions must be regarded as unsubstantiated.Centrifuge separation of clay fractions (based on a Stokes’law application) gives separations in which a significant, but variable, percentage of grains have long axes greater than the size calculated. For the typical 〈2-μm fraction utilized, some 20% of grains lie in the 2–4-μm range, although the proportion is not believed to have a significant effect upon ‘crystallinity’values. The formula is applicable for grain-sizes down to 0.5 μm. Illite ‘crystallinity’values on samples prepared by an ultrasonic disaggregation method show a small increase on those prepared by ball mill crushing. The differences are minimal at the epi/anchizone level but increase to some 10% at the anchizone/diagenetic level. The effect on grade determinations is again thought to be minimal and indicates that concern over unsuitability of the ultrasonic disaggregation method is unfounded.
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  • 49
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    Journal of metamorphic geology 8 (1990), S. 0 
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  • 50
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    Journal of metamorphic geology 8 (1990), S. 0 
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    Topics: Geosciences
    Notes: The amphibolite facies Puolankajärvi Formation (PjF) occupies the western margin of the Early Proterozoic Kainuu Schist Belt (KSB) of northern Finland. The lower and middle parts of the PjF consist of turbiditic psammites and pelites and tempestitic semipelites. This report concentrates on the pelitic lithologies which include quartz–two-mica–plagioclase schists with variable amounts of garnet, staurolite, andalusite and biotite porphyroblasts as well as sillimanite and cordierite segregations.The KSB forms a major north–south-trending synclinorium between two Archaean blocks. It contains both autochthonous and allochthonous units and is cut by faults and shear zones. The PjF lies on the western side of the KSB and is probably allochthonous. The formation has undergone six major deformation phases (D1, D2, D3a, D3b, D4 and D5). During D3a-D5 the maximum principal stress (σ1) changed in a clockwise direction from south-west to north-east. Between D2 and D3 the intermediate principal stress (σ2) changed from horizontal to vertical and the interval between D2 and D3 marks a transition from thrust to strike-slip tectonics.Relict structures in the porphyroblasts indicate the following mineral growth–deformation evolution in the PjF. (1) Throughout the PjF there was a successive crystallization of garnet (syn-D1), poryphyroblastic biotite (inter-D3/4) and staurolite (inter-D3/4) during the pre-D4 stage. (2) A syn-D4-inter-D4/5 crystallization of kyanite, sillimanite (fibrolite), porphyroblastic tourmaline, magnetite, rutile, cordierite and muscovite–biotite–plagioclase pseudomorphs after staurolite was most localized at and near D4 shear zones. (3) A syn- to post-D5 generation of andalusite, ilmenohematite and sheet silicates after staurolite and after cordierite occurred near D5 faults.The evolution outlined here permits the relative dating of the PjF parageneses, which is used in the second part of the study (Tuisku & Laajoki, 1990), and, together with the knowledge of the pressure–temperature conditions during various growth events, makes it possible to compile pressure–temperature–deformation paths for the PjF.
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  • 51
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    Journal of metamorphic geology 9 (1991), S. 0 
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    Topics: Geosciences
    Notes: Petrographical and mineral chemical data are given for the eclogites which occur in the garnet-kyanite micaschists of the Penninic Dora-Maira Massif between Brossasco, Isasca and Martiniana (Italian Western Alps) and for a sodic whiteschist associated with the pyrope-coesite whiteschists of Martiniana. The Brossasco-Isasca (BI) eclogites are fine grained, foliated and often mica-rich rocks with a strong preferred orientation of omphacite crystals and white micas. Porphyroblasts of hornblende are common in some varieties, whilst zoisite and kyanite occur occasionally in pale green varieties associated with leucocratic layers with quartz, jadeite and garnet. These features differentiate the BI eclogites from the eclogites that occur in other continental units of the Western Alps, which all belong to type C. Garnet, sodic pyroxene and glaucophane are the major minerals in the sodic whiteschist.Sodic pyroxene in the eclogites is an omphacite often close to Jd50Di50, with very little acmite and virtually no AlIV, and impure jadeite in the leucocratic layers and in the sodic whiteschist. Garnet is almandine with 20–30 mol. % for each of the pyrope and grossular components in the eclogites and a pyrope-rich variety in the sodic whiteschist. White mica is a variably substituted phengite, and paragonite apparently only occurs as a replacement product of kyanite. Amphibole is hornblende in the eclogites, but the most magnesian glaucophane yet described in the sodic whiteschist. Quartz pseudomorphs of coesite were found occasionally in a few pyroxenes and garnets.The P-T conditions during the VHP event are constrained in the eclogites by reactions which define a field ranging from 27–28 kbar to 35 kbar and from 680 to 750° C. These temperatures are consistent with the results of garnet-pyroxene and garnet-phengite geothermometry which suggest that the eclogites may have equilibrated at around 700° C. In the sodic whiteschist pressures ranging from 29 to 35 kbar can be deduced from the stability of the jadeite-pyrope garnet-glaucophane compatibility. As in the eclogites water activity must have been low. Such conditions are close to the P-T values estimated for the early Alpine recrystallization of the pyrope-coesite rock and, like petrographical and mineralogical features, set aside the BI eclogites from the other eclogites of the Western Alps, instead indicating a close similarity to some of the eclogite bodies occurring in the Adula nappe of the Central Alps. An important corollary is that glaucophane stability, at least in Na- and Mg-rich compositions and under very high pressures, may extend up to 700° C, in agreement with the HT stability limit suggested by experimental studies.
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  • 52
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    Journal of metamorphic geology 9 (1991), S. 0 
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    Topics: Geosciences
    Notes: The retrograde P-T trajectory of the eclogitic Fe-Ti-gabbros from the Ligurian Alps is constrained by the appearance of mineral parageneses post-dating the Na-clinopyroxene + garnet eclogitic assemblage and indicating the following sequence of metamorphic events: (1) amphibolitic stage— edenite/katophorite + plagioclase (An33–43) + oxides in symplectitic aggregates; (2) glaucophanic stage— a porphyroblastic glaucophanic amphibole has overgrown the symplectite, winchite also occurs as thin rims around glaucophane and both amphiboles are, sometimes, armoured by atoll garnets; (3) albite-amphibolite stage—barroisite/katophorite + albite + epidote + oxides ± chlorite overprint the glaucophanic stage minerals; (4) greenschist stage—represented by actinolite + albite + epidote + oxide paragenesis.The metamorphic evolution is complex and the decompression path, on a P–T diagram, is significantly different from those defined in the literature for the Voltri eclogites. The main features inferred from the P–T path are the following: (1) the pressure climax does not match the thermal climax, the maximum temperature conditions are in fact achieved during the early stage of uplift; (2) a decrease in temperature, suggested by the appearance of glaucophane after the amphibolitic symplectite; (3) successive uplift, probably accompanied by an increase in temperature. The complexity of the P-T path drawn for the Voltri eclogites can be explained with a mechanism of successive underthrusts propagating from the innermost to the outermost sector of the Ligurian Alps.
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  • 53
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    Journal of metamorphic geology 8 (1990), S. 0 
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    Topics: Geosciences
    Notes: Within the Çokkul synform, Caledonian metamorphic rocks of the Middle Köli Nappe Complex (MKNC) are in low-angle fault contact with the basement mylonites derived from the Precambrian Tysfjord granite-gneiss. In the synform, the MKNC is composed of four fault-bounded nappes each of which has a distinct tectonic stratigraphy composed of amphibolite-facies metamorphosed pelitic and psammitic schists with minor lensoidal bodies of mafic and ultramafic rocks.Pelitic rocks from the three structurally lowest nappes contain the low-variance AFM mineral assemblages gar + bio + staur and staur + ky + bio with mu + qtz + ilm, whereas staur and ky are absent from the highest nappe, the Kallakvare nappe. AFM mineral assemblages in the three lowest nappes indicate peak metamorphic temperatures of 610–660°C and peak pressures in excess of 600 MPa. Mineral assemblages from the Kallakvare nappe are not as diagnostic of metamorphic grade. However, rocks from that nappe contain coexisting plagioclases from both sides of the peristerite gap, suggesting lower-grade peak P–T conditions than those of the structurally lower nappes. In addition, biotite from the lower nappes is more Ti-rich than biotite from the Kallakvare nappe. However, gar–bio–mu–plag and gar–bio–ky–plag–qtz thermobarometry suggests that all four nappes equilibrated at approximately 525 ± 25°C and 700 ± 100 MPa.Gibbs method thermodynamic modelling of garnet zoning profiles suggests that the lower three nappes followed clockwise P–T paths that involved heating and compression to a metamorphic peak of approximately 575–625°C, 800 MPa followed by cooling and decompression to 525°C, 700 MPa. P–T paths calculated for the Kallakvare nappe show decompression and minor heating to a peak T of 500–525°C. In the lower nappes, staur and ky grew during the heating phase not seen by the highest nappe. The outer parts of the paths from all four nappes are approximately parallel, possibly recording the emplacement of the Kallakvare nappe onto the already stacked lower three nappes at some time following the metamorphic peak. These P–T paths suggest that the sole fault of the Kallakvare nappe is a normal fault. Garnet zonation thus appears to record a previously unrecognized phase of uplift and tectonic thinning of the MKNC. This event appears to be restricted to the MKNC and to have occurred prior to the emplacement of the MKNC onto the Tysfjord granite-gneiss basement of Baltoscandia under greenschist-facies conditions. It may have been responsible for the uplift and cooling of the MKNC from 25–30 km amphibolite-facies conditions prior to its emplacement onto Baltoscandia under 15–20 km greenschist-facies conditions.The deformation zone associated with this normal fault is relatively narrow, generally less than 1 m thick. If this is typical of other detachment faults in the metamorphic infrastructure of the Scandinavian Caledonides, they may be relatively common, but not often recognized due to the detailed study needed to document them.
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    Journal of metamorphic geology 8 (1990), S. 0 
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    Topics: Geosciences
    Notes: Numerical models of the progressive evolution of pelitic schists in the NCMnKFMASH system with the assemblage garnet + biotite + chlorite ± staurolite + plagioclase + muscovite + quartz + H2O are presented with the goal of predicting compositional changes in garnet and plagioclase along different P-T paths. The numerical models support several conclusions that should prove useful for interpreting the P-T paths of natural parageneses: (i) Garnet may grow along P-T vectors ranging from heating with decompression to cooling with compression. P-T paths deduced from garnet zoning that are inconsistent with these growth vectors are self-contradictory. (ii) There is a systematic relation between garnet and plagioclase composition and growth such that for most P-T paths, garnet growth requires plagioclase consumption. Furthermore, mass balance in a closed system requires that as plagioclase is consumed the remaining plagioclase becomes increasingly albitic. Inclusions of plagioclase in the core of garnet should be more anorthitic than those near the rim and zoned matrix plagioclase should have rims that are more albitic than the cores. Complex plagioclase textures may arise from the local variability of growth and precipitation kinetics. (iii) A decrease of Fe/(Fe + Mg) in a garnet zoning profile is a reliable indicator of increasing temperature for the assemblage modelled. However, there is no single reliable ΔP monitor and inferences about ΔP can only be made by considering plagioclase and garnet together. (iv) Consumption of garnet during the production of staurolite removes material from the outer shell of a garnet and may make recovery of peak metamorphic compositions and P-T conditions impossible. Low ‘peak’temperatures typically recorded by staurolite-bearing assemblages may reflect this phenomenon. (v) Diffusional homogenization of garnet affects the computed P-T path and results in a clockwise rotation of the computed P-T vector relative to the true P-T path.
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  • 55
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    Topics: Geosciences
    Notes: Abstract Geological relationships and geochronological data suggest that in Miocene time the metamorphic core of the central Himalayan orogen was a wedge-shaped body bounded below by the N-dipping Main Central thrust system and above the N-dipping South Tibetan detachment system. We infer that synchronous movement on these fault systems expelled the metamorphic core southward toward the Indian foreland, thereby moderating the extreme topographic gradient at the southern margin of the Tibetan Plateau. Reaction textures, thermobarometric data and thermodynamic modelling of pelitic schists and gneisses from the Nyalam transect in southern Tibet (28°N, 86°E) imply that gravitational collapse of the orogen produced a complex thermal structure in the metamorphic core. Amphibolite facies metamorphism and anatexis at temperatures of 950 K and depths of at least 30 km accompanied the early stages of displacement on the Main Central thrust system. Our findings suggest that the late metamorphic history of these rocks was characterized by high-T decompression associated with roughly 15 km of unroofing by movement on the South Tibetan detachment system. In the middle of the metamorphic core, roughly 7–8 km below the basal detachment of the South Tibetan system, the decompression was essentially isothermal. Near the base of the metamorphic core, roughly 4–6 km above the Main Central thrust, the decompression was accompanied by about 150 K of cooling. We attribute the disparity between the P–T paths of these two structural levels to cooling of the lower part of the metamorphic core as a consequence of continued (and probably accelerated) underthrusting of cooler rocks in the footwall of the Main Central thrust at the same time as movement on the South Tibetan detachment system.
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  • 56
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract Metre-scale amphibolite boudins in the Cheyenne Belt of south-eastern Wyoming are cut and deformed by shear zones which preserve a full strain transition across 7 cm, from relatively undeformed amphibolite with a relict igneous texture to mylonitic amphibolite with an L-S tectonic fabric. The strain transition is marked by the progressive rotation of amphibole + plagioclase aggregates into parallelism with the shear-zone boundary. An increase in strain magnitude is indicated by development of the tectonic fabric and progressive reduction of amphibole and plagioclase grain size as a result of cataclasis. Bulk chemistry of five samples across a single strain transition shows no significant or systematic variation in major element chemistry except for a minor loss of SiO2, which indicates that the shear zone was a system essentially closed to non-volatile components during metamorphism and deformation. Amphibolites throughout the shear zone consist of amphibole and plagioclase with only minor amounts of quartz, chlorite, epidote, titanite and ilmenite. Within the relatively undeformed amphibolite, amphibole and plagioclase have wide compositional ranges in single thin sections. Amphibole compositions vary from actinolitic hornblende to magnesio-hornblende with increases in Al, Fe, Na and K contents and decreases in Si and Mg that can be modelled as progress along tschermakite, edenite and FeMg-1 exchange vectors from tremolite. Plagioclase ranges from An60 in cores to An30 within grain-boundary domains. With increasing strain magnitude, local variation of amphibole composition decreases as amphibole becomes predominantly magnesio-hornblende. Plagioclase composition range also decreases, although grain-boundary domains still have higher albite content. These petrological data indicate that shear-zone metamorphism was controlled by the magnitude of strain during synmetamorphic deformation. SEM and microprobe imaging indicate that chemical reactions occurred by a dissolution and reprecipitation process during or after cataclastic deformation. This suggests that grain-boundary formation was an important process in the petrological evolution of the shear zone, possibly by providing zones for fluid ingress to facilitate metamorphic reactions. These results highlight the necessity for conducting detailed microstructural evaluation of rocks in order to interpret petrological, isotopic and geochronological data.
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract Ten metamorphic domains can be distinguished in China, comprising four cratonic, three intracratonic and three intercratonic domains. Each domain contains one or more metamorphic belts, each of which, in turn, contains a characteristic metamorphic facies or facies series that was formed during a distinct metamorphic epoch.The metamorphic domains reflect the tectonic domains and tectonic evolution of China. Ancient continental nucleii in the North China and Tarim–Alxa cratons were probably unified with the Yangtze craton during the Early Proterozoic to form the China Platform. Widespread greenschist facies metamorphism, during the Middle and Late Proterozoic, accompanied by glaucophane–greenschist facies metamorphism, represents a rifting and closure event in the China Platform; a second rifting and closure event in the China Platform occurred during the Caledonian. The China and Siberian platforms were closed during the Hercynian to form the Eurasian Continent. Closure of the ancient Tethys Ocean occurred in the Indosinian epoch, and subduction and collision within Xizang (Tibet) and Taiwan occurred during Mesozoic–Cenozoic time.The distribution in time of types of metamorphism in China suggests cyclical changes of metamorphism known as the Archaean, Proterozoic and Phanerozoic megacycles. Each megacycle since the Archaean consists of a change from progressive, low- to intermediate-grade metamorphism to lower grade, greenschist metamorphism that was superimposed on a general trend in which high-grade metamorphism became progressively less important with time. The change in metamorphic megacycles shows a general secular decrease in regional heat supply during metamorphism punctuated by episodic high-grade, progressive metamorphism within orogenic belts.
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  • 58
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    Journal of metamorphic geology 11 (1993), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract The Shangdan fault in the Qinling Orogenic Belt of China is an important boundary between the Caledonian North Qinling Fold Belt and the Hercynian South Qinling Fold Belt. In the Danfeng area, the fault zone strikes WNW–ESE and comprises four strongly deformed zones and three weakly deformed domains parallel to each other. The fault zone has a complex history of multiple deformation and each domain has a different tectonic style that was formed at different stages of the deformation.The rocks exposed in the weakly deformed domains belong to the Qinling, Danfeng and Liuling Groups. In this paper, the mineral chemistry and mineral assemblages are used to infer the metamorphic conditions and the P–T paths of these units. The metamorphic units in and near the fault zone have different metamorphic conditions and histories that are correlated with the tectonic evolution of the fault zone. Caledonian–Hercynian uplift and southward thrusting of the Proterozoic Qinling Group, over the Danfeng and the Liuling Groups, produced the main metamorphic and tectonic features of the fault zone. Folding of both the Liuling Group and the thrust faults during the Hercynian–Indosinian was accompanied by northward thrusting.
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  • 59
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    Journal of metamorphic geology 12 (1994), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: The intracrystalline diffusion rate of oxygen in diopside was constrained based on natural isotopic variations from a granulite facies marble from Cascade Slide, Adirondacks (New York, USA). The oxygen isotope compositions of the diopsides, measured as a function of grain size, are nearly constant (20.9 ± 0.3‰ vs. SMOW) over the entire measured size range (0.3–3.2 mm diameter). The δ18O values of the cores of calcite grains are 23.0‰. Temperature estimates based on the Δ18O(calcite-diopside) are 800d̀C, in agreement with the highest previous thermometric estimates for these rocks.The lack of isotopic variation in the diopsides as a function of grain size requires that the oxygen intracrystalline diffusion rate in diopside from the Adirondack samples was very slow. The maximum diffusion rates (D800d̀C parallel to the c-axis) were calculated with an infinite reservoir model (IRM) and a finite reservoir model (FRM) that incorporates mineral modal abundances and initial isotopic variations. For an assumed activation energy (Q) = 100 kJ/mol, the IRM diffusion rate estimate of 1.6 times 10-20cm2/s is two orders of magnitude faster than from the FRM; at Q=500kJ/mol, the D800d̀C estimate for both methods is c. 5.6 times 10-20 cm2/s. The present results require that a hydrothermal fluid significantly enhances the diffusion rate of oxygen in diopside if previous data are correct.The δ18O(SMOW) and δ13C(PDB) values of the calcite, measured in situ with a CO2 laser, are 22.9 ± 0.3, 0.1±0.3‰ in the grain cores, 22.1 ±0.3, 0.2 ±0.1‰ at the grain boundaries and 21.7 ±0.4, -0.6±0.1‰ abutting diopside grains. The δ18O and δ13δC values measured conventionally are: crystal cores, 22.96, -0.95‰; abutting diopside grains, 22.38, -0.93‰; bulk, 22.79, -0.95%. Use of the bulk δ18O(calcite) values for thermometry yields unreasonably high temperatures. The lower δ18O values at the calcite grain boundaries are not due to retrograde diffusional exchange with the diopside, they are thought to be a result of a late retrograde fluid infiltration.
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  • 60
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    Journal of metamorphic geology 11 (1993), S. 0 
    ISSN: 1525-1314
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    Topics: Geosciences
    Notes: Abstract Discontinuous ultramylonite zones cut Proterozoic granulite facies gneisses in MacRobertson Land, east Antarctica, and preserve evidence of ductile non-coaxial flow and reverse sense of shear. Cross-cutting relationships indicate that ultramylonite deformation involved overthrusting to the east, but progressively rotated to involve overthrusting to the north; rotation of the principal compressive stress axes is inferred. Extensive pseudotachylite developed during ultramylonitization, the history of individual ultramylonite zones having involved a single episode of pseudotachylite generation. Neoblastic sillimanite indicates ultramylonitization occurred at 〉520° C. On the basis of inferred recrystallized granulite facies mineral assemblages ultramylonitization occurred at 〉700° C, and ≤7.3 ± 0.5 kbar, at aH2O± 0.3 and low aCO2. Comparison of these values with those suggested by metamorphic assemblages in rocks unaffected by mylonitization indicates that the Rayner Complex experienced a late increase in pressure of 1–2 kbar during ultramylonitization. The P-T-aH2O conditions of the ultramylonite zones are inferred to have been close to the solidus for minimum melting, pseudotachylite generation having involved a limited pressure drop during brittle fracturing at high strain rates. Most of the pseudotachylite veins are undeformed; the mechanism(s) of fracturing and melting must have caused strain hardening in rocks surrounding the ultramylonite, further strain having been mostly accommodated by a new or subsidiary shear zone. Renewed stress at reduced strain rates, or renewed stress in zones in which the proportion of pseudotachylite was significantly higher, could have led to the rare occurrences of deformed pseudotachylite. The preservation of fine-grained pseudotachylite is dependent on it remaining dry.
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  • 61
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract C-O-H fluid produced by the equilibration of H2O and excess graphite must maintain the atomic H/O ratio of water, 2:1. This constraint implies that all thermodynamic properties of the fluid are uniquely determined at isobaric-isothermal conditions. The O2, H2O and CO2 fugacities (fo2, fH2O and fCO2) of such fluids have been estimated from equations of state and fit as a function of pressure and temperature. These fugacities can be taken as characteristic for graphitic metamorphic systems in which the dominant fluid source is dehydration, e.g. pelitic lithologies. Because there are no compositional degrees of freedom for graphite-saturated fluids produced entirely by dehydration, the variance of the dehydration process is not increased in comparison with that in non-graphitic systems. Thus, compositional ‘buffering’of C-O-H fluids by dehydration equilibria, a common petrological model, requires that redox reactions, decarbonation reactions or external, H/O ± 2, fluid sources perturb the evolution of the metamorphic system. Such perturbations are not likely to be significant in metapelitic environments, but their tendency will be to increase the fO2 of the fluid phase. At high metamorphic grades, pyrite desulphidation reactions may cause a substantial reduction of fH2O and slight increases in fO2 and fCO2 relative to sulphur-free fluid. At low metamorphic grade, sulphur solubility in H/O ± 2 fluids is so low that pyrite decomposition must occur by sulphur-conserving reactions that cause iron depletion in silicates, a common feature of sulphidic pelites. With increasing temperature and sulphur solubility, pyrite desulphidation may be driven by dehydration reactions or infiltration of H2O-rich fluids. The absence of magnetite and the assemblages carbonate + aluminosilicate or pyrite + pyrrhotite + ilmenite from most graphitic metapelites is consistent with an H/O = 2 model for GCOH(S) fluid. For graphitic rocks in which such a model is inapplicable, a phase diagram variable that defines the H/O ratio of GCOH(S) fluid is more useful than the conventional fO2 variable.
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  • 62
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    Journal of metamorphic geology 11 (1993), S. 0 
    ISSN: 1525-1314
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    Topics: Geosciences
    Notes: Abstract Muscovite-poor pelitic schists in the wallrocks of the Proterozoic Annex sulphide deposit, near Prieska, South Africa, contain peak metamorphic assemblages including Crd + Bt + Sil, St + Sil + Bt, Crd + St + Bt and, rarely, Ky + St ° Crd. All rocks include oligoclase, quartz and commonly Fe–Mn garnet, with or without muscovite. Peak assemblages, assigned to M2 regional metamorphism in the Gordonia Belt (Namaqua Province), are syn- to post-kinematic with respect to the main S2 fabric although larger staurolite grains contain S1 inclusion trails. Garnet–biotite thermometry, utilizing corrections for Fe3+, Mn, AlVI and Ti, yields peak temperatures of 571–624°C at pressures of 4.5–6.0 kbar. Consideration of the sympathetic variation of XMn in garnet with XMg in biotite and the preserved zoning patterns in prograde garnets, together with the inferred prograde transition from kyanite to sillimanite, indicates that heating occurred during mild decompression to the M2 metamorphic peak. Sillimanite and cordierite grew last in the prograde sequence, possibly related to a pulse of thermal metamorphism (M3) that is found along the margin of the Keimoes Suite batholith to the north.Retrograde assemblages, including Ms + Ky + Chl + Qtz (after Crd + Bt), Ky + Ms (after Sil) and Chl + Ms (after St) indicate a period of isobaric cooling (M4a) terminated by rehydration in the kyanite stability field at about 500°C.The size difference between prograde (1–2-mm) and retrograde (0.05–0.1-mm) mineral grains indicates substantial undercooling below equilibrium positions of relevant retrograde reactions prior to rehydration, and explains why cordierite that grew during M2 is almost completely destroyed. Post-M4a regrowth of staurolite and garnet (M4b) is spatially linked to sites of M4a rehydration. It reached temperatures of 510–530°C, remaining within the stability field of kyanite.A best fit of the observed textural history to the Namaqua orogenic cycle involves collision and heating (M2/D2) followed by granite intrusion (M3), rifting (M4a) and renewed heating due to crustal loading during volcanism (M4b). The P–T path for the Annex region is consistent with those derived from elsewhere in the Gordonia Belt and, with modification, to that published already for the nearby Prieska Copper Mines.
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract Portions of three Proterozoic tectonostratigraphic sequences are exposed in the Cimarron Mountains of New Mexico. The Cimarron River tectonic unit has affinities to a convergent margin plutonic/volcanic complex. Igneous hornblende from a quartz diorite stock records an emplacement pressure of 2–2.6 kbar. Rocks within this unit were subsequently deformed during a greenschist facies regional metamorphism at 4–5 kbar and 330 ± 50° C.The Tolby Meadow tectonic unit consists of quartzite and schist. Mineral assemblages are indicative of regional metamorphism at pressures near 4 kbar and temperatures of 520 ± 20° C. A low-angle ductile shear zone separates this succession from gneisses of the structurally underlying Eagle Nest tectonic unit. Gneissic granite yields hornblende pressures of 6–8 kbar. Pelitic gneiss records regional metamorphic conditions of 6–7 kbar and 705 ± 15° C, overprinted by retrogression at 4 kbar and 530 ± 10° C. Comparison of metamorphic and retrograde conditions indicates a P–T path dominated by decompression and cooling. The low-angle ductile shear zone represents an extensional structure which was active during metamorphism. This extension juxtaposed the Tolby Meadow and Eagle Nest units at 4 kbar and 520° C. Both units were later overprinted by folding and low-grade metamorphism, and then were emplaced against the Cimarron River tectonic unit by right-slip movement along the steeply dipping Fowler Pass shear zone.An argon isotope-correlation age obtained from igneous hornblende dates plutonism in the Cimarron River unit at 1678 Ma. Muscovite associated with the greenschist facies metamorphic overprint yields a 40 Ar/39 Ar plateau age of 1350 Ma. By contrast, rocks within the Tolby Meadow and Eagle Nest units yield significantly younger argon cooling ages. Hornblende isotope-correlation ages of 1394–1398 Ma are interpreted to date cooling during middle Proterozoic extension. Muscovite plateau ages of 1267–1257 Ma appear to date cooling from the low-grade metamorphic overprint. The latest ductile movement along the Fowler Pass shear zone post-dated these cooling ages. Argon released from muscovites of the Eagle Nest/Tolby Meadow composite unit, at low experimental temperatures, yields apparent ages of c. 1100 Ma. Similar ages are not obtained north-east of the Fowler Pass shear zone, suggesting movement more recently than 1100 Ma.
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  • 64
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract Regional metamorphism in central Inner Mongolia has occurred during four different periods: the middle Proterozoic, the early Palaeozoic, the middle Palaeozoic and the late Palaeozoic tectonic cycles. The middle Proterozoic and late Palaeozoic metamorphic events are associated with rifting and are characterized by low-pressure facies series. The early Palaeozoic metamorphism occurred in two stages: (1) subduction zone metamorphism resulted in paired metamorphic belts in the Ondor Sum ophiolite and Bainaimiao island arc complex; and (2) orogenic metamorphism occurred during the collision of an island arc with the continent. Two types of middle Palaeozoic metamorphism are represented: (1) subduction zone metamorphism, which affected the melange; and (2) orogenic metamorphism that resulted from continent–continent collision.
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract The metamorphic history and tectonic evolution of the Qinling Complex is divided into formation and modification stages. During the Proterozoic formation stage, three deformational sequences are recognized. Andalusite–muscovite, sillimanite–muscovite and sillimanite–K-feldspar zones of amphibolite facies regional metamorphism are earlier than, or synchronous with the first or second phase of folding. Ductile shear zones were formed and Caledonian granites were emplaced during the modification stage. The granites superimposed contact aureoles (garnet–K-feldspar zone) on the regional metamorphic fabric.Metamorphic reactions, P–T conditions of metamorphism and P–T–t paths were estimated by analysis of mineral textures and standard thermobarometric techniques. The P–T–t path of the Proterozoic tectonometamorphic cycle shows prominent clockwise decompression. The P–T–t path of the Caledonian tectonometamorphic cycle is characterized by an early rise of pressure and temperature, followed by isothermal decompression (rapid uplift) and finally with isobaric cooling.The P–T–t paths of the two tectonometamorphic cycles reflect two major stages of collision and uplift in the evolution of the Qinling orogenic belt during the Proterozoic and Caledonian–Hercynian periods, respectively.
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  • 67
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract Eclogites are distributed for more than 500 km along a major tectonic boundary between the Sino-Korean and Yangtze cratons in central and eastern China. These eclogites usually have high-P assemblages including omphacite + kyanite and/or coesite (or its pseudomorph), and form a high-P eclogite terrane. They occur as isolated lenses or blocks 10 cm to 300 m long in gneisses (Type I), serpentinized garnet peridotites (Type II) and marbles (Type III). Type I eclogites were formed by prograde metamorphism, and their primary metamorphic mineral assemblage consists mainly of garnet [pyrope (Prp) = 15–40 mol%], omphacite [jadeite (Jd) = 34–64 mol%], pargasitic amphibole, kyanite, phengitic muscovite, zoisite, an SiO2 phase, apatite, rutile and zircon. Type II eclogites characteristically contain no SiO2 phase, and are divided into prograde eclogites and mantle-derived eclogites. The prograde eclogites of Type II are petrographically similar to Type I eclogites. The mantle-derived eclogites have high MgO/(FeO + Fe2O3) and Cr2O3 compositions in bulk rock and minerals, and consist mainly of pyrope-rich garnet (Prp = 48–60 mol%), sodic augite (Jd = 10–27 mol%) and rutile. Type III eclogites have an unusual mineral assemblage of grossular-rich (Grs = 57 mol%) garnet + omphacite (Jd = 30–34 mol%) + pargasite + rutile.Pargasitic and taramitic amphiboles, calcic plagioclase (An68), epidote, zoisite, K-feldspar and paragonite occur as inclusions in garnet and omphacite in the prograde eclogites. This suggests that the prograde eclogites were formed by recrystallization of epidote amphibolite and/or amphibolite facies rocks with near-isothermal compression reflecting crustal thickening during continent–continent collision of late Proterozoic age. Equilibrium conditions of the prograde eclogites range from P 〉 26 kbar and T= 500–750°C in the western part to P 〉 28 kbar and T= 810–880°C in the eastern part of the high-P eclogite terrane. The prograde eclogites in the eastern part are considered to have been derived from a deeper position than those in the western part. Subsequent reactions, manifested by (1) narrow rims of sodic plagioclase or paragonite on kyanite and (2) symplectites between omphacite and quartz are interpreted as an effect of near-isothermal decompression during the retrograde stage. The conditions at which symplectites re-equilibrated tend to increase from west (P 〈 10 kbar and T 〈 580°C) to east (P 〉 9 kbar and T 〉 680°C). Equilibrium temperatures of Type II mantle-derived eclogites and Type III eclogite are 730–750°C and 680°C, respectively.
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract Fluid evolution paths in the COHN system can be calculated for metamorphic rocks if there are relevant data regarding the mineral assemblages present, and regarding the oxidation and nitrodation states throughout the entire P-T loop. The compositions of fluid inclusions observed in granulitic rocks from Rogaland (south-west Norway) are compared with theoretical fluid compositions and molar volumes. The fluid parameters are calculated using a P-T path based on mineral assemblages, which are represented by rocks within the pigeonite-in isograd and by rocks near the orthopyroxene-in isograd surrounding an intrusive anorthosite massif. The oxygen and nitrogen fugacities are assumed to be buffered by the coexisting Fe-Ti oxides and Cr-carlsbergite, respectively. Many features of the natural fluid inclusions, including (1) the occurrence of CO2-N2-rich graphite-absent fluid inclusions near peak M2 metamorphic conditions (927° C and 400 MPa), (2) the non-existence of intermediate ternary CO2-CH4-N2 compositions and (3) the low-molar-volume CO2-rich fluid inclusions (36–42 cm3 mol−1), are reproduced in the calculated fluid system. The observed CO2-CH4-rich inclusions with minor N2 (5 mol%) should also include a large proportion of H2O according to the calculations. The absence of H2O from these natural high-molar-volume CO2-CH4-rich inclusions and the occurrence of natural CH4-N2-rich inclusions are both assumed to result from preferential leakage of H2O. This has been previously experimentally demonstrated for H2O-CO2-rich fluid inclusions, and has also been theoretically predicted. Fluid-deficient conditions may explain the relatively high molar volumes, but cannot be used to explain the occurrence of CH4-N2-rich inclusions and the absence of H2O.
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  • 69
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    Topics: Geosciences
    Notes: Abstract Declining temperatures during decay of a hydrothermal system, or during uplift and erosion, tend to result in veins involving progressive hydration reactions, e.g. veins with laumontite cutting prehnitepumpellyite facies rocks, and stilbite veins cutting laumontite veins.In contrast, examples are described of analcime replacement of heulandite along fractures in heulanditized vitric tuff, of replacement of analcime by albite along fractures in quartz-analcime rock, of joint-controlled replacement of heulandite in tuff by laumontite + quartz + (Na, K)-feldspars, of replacement of laumontite by prehnite + quartz along fractures in alumontitized vitric tuff, and of laumontitebearing feldspathic sandstones cut by vein assemblages of quartz and prehnite ° Calcite. The vein mineral assemblage, sometimes with pumpellyite and/or epidote in the prehnite-bearing veins, tends to spread as a zone of dehydration into the adjacent country rock. Except perhaps for albite replacement of analcime, and for laumontite replacement of heulandite, these open-system reactions involve cation activity ratios in the fluid. All involve dehydration. They are favoured by an increase in temperature, and except under certain situations where P-T equilibrium curves have negative slopes, are favoured by a fall in PH2O. Evidence indicates that in at least some cases the triggering mechanism was a drop in PH2O; this may be a widespread phenomenon associated with brittle fracture in the seismogenic upper crust. This may cause fluid pressure to drop from values approaching lithostatic to nearer hydrostatic, and equilibrium may be displaced to yield a less hydrous assemblage that appears as a dehydration vein and vein verge. The dehydration vein assemblage may be diagnostic of a higher grade mineral facies and adds to the mineral complexity attributable to varying permeabilities and fluid pressures in upper crustal strata. Mineral facies are likely to be more uniformly distributed in higher grade rocks from below the brittle-ductile transition zone.Reactions involving complex solid solutions are inappropriate as facies boundaries.
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    Topics: Geosciences
    Notes: Abstract Mg–Fe carpholite is widespread in the Diahot region of New Caledonia in highly aluminous schists and as veins in what was originally a clay-rich hydrothermal alteration envelope about massive suphide deposits. These carpholites have Fe/(Fe + Mg) ratios of 0.03–0.65 and no significant Mn component. Mg-carpholite + quartz occur in assemblages with chlorite or pyrophyllite, pyrophyllite + kaolinite and pyrophyllite + diaspore. Temperatures of 230–320° C and minimum pressures of 7 kbar are indicated for the Mg–Fe carpholite-bearing rocks. The regional distribution of aragonite and Mg–Fe carpholite parallel to a major zone of dominantly transcurrent movement and oblique to the trend of the subduction complex indicates the high-P/low-T schists owe their rapid uplift and preservation to the vertical component of the transcurrent faulting.
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract A metasomatic diopside rock occurs at the top of the dolomitic Connemara Marble Formation of western Ireland and contains titanite and K-feldspar in addition to around 90% diopside (XMg= 0.90–0.97). U–Pb isotopic measurements on this mineral assemblage show that the titanite is both unusually uranium-rich and isotopically concordant, with the result that a precise U–Pb age of 478 ± 2.5 Ma can be determined. The age is identical within error to a less precise Rb–Sr age of diopside–K-feldspar of 483 ± 6 Ma. Petrological evidence indicates that the assemblage crystallized at c. 620° C close to or below the closure temperature of titanite. The age thus provides a precise estimate of the time of metamorphism; this age is 11 ± 3 Ma younger than the 490 Ma age for nearby gabbroic plutons which has previously been used to constrain the peak metamorphic age. This difference accords well with geological evidence that the gabbros were emplaced prior to the metamorphic peak. Analysis of minerals with high closure temperature from assemblages whose crystallization is unambiguously associated with a specific episode of fluid infiltration at the peak of metamorphism provides the basis for a new approach to dating metamorphism. The success of this approach is demonstrated by the results from Connemara.
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract Eclogites with a wide range in bulk composition are present in the Münchberg Massif, part of the Variscan basement of the Bohemian Massif in north-east Bavaria. New analyses of the primary phases garnet, omphacite, phengite and amphibole, as well as the secondary phases clinopyroxene II, various amphiboles, biotite/phlogopite, plagioclase, margarite, paragonite, prehnite and pumpellyite, reveal a complex uplift history. New discoveries were made of samples with very jadeite-rich primary omphacite as well as a secondary omphacite in a symplectite with albite. Various geothermobarometric techniques, together with thermodynamic databases (incorporating separately determined activity–composition values) and experimental data have clustered the minimum conditions for the primary assemblages to the P–T range 650 ± 60° C, 14.3 ± 1 kbar. However, jadeite (in omphacite)–kyanite–paragonite (in phengite) and zoisite–grossular (in garnet)–kyanite–quartz relationships suggests pressures of 25–28 kbar at the same temperatures. The fact that the secondary omphacite–plagioclase assemblage yields pressures within a few hundred bars of the minimum pressures for the plagioclase-free assemblages strongly suggests that the minimum values are serious underestimates.Zoning, inclusion suites and breakdown reactions of primary phases, in addition to new minerals formed during uplift, define a polyphase metamorphic evolution which, from geochronological evidence, occurred solely within the Variscan cycle. The complex breakdown in other Bohemian Massif eclogites and the distinct variation in their temperatures during uplift suggest a multi-stage thrusting model for the regional evolution of the eclogites. Such an evolution has significance with respect to incorporation of mantle slices into crustal sequences and fluid derivation from successively subducted units, possibly driving the breakdown reactions.
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    Journal of metamorphic geology 12 (1994), S. 0 
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    Topics: Geosciences
    Notes: Clay mineral crystallinity and crystallite (domain) size data determined by X-ray diffraction (XRD) are methods extensively used in the characterization of very low-grade metamorphic conditions. However, the lack of sufficient interlaboratory standardization has made comparisons between different research groups unreliable due to significant variations in numerical results obtained, a consequence of the different machine conditions, measurement methods and sample preparations used during analysis. A calibration approach to the standardization of data using rock chip standards is presented, which allows data sets produced by different research groups to be directly and quantitatively compared. A standardized scale, the crystallinity index standard (CIS), is proposed, with illite crystallinity anchizonal boundary limits of 0.25d̀Δ2θ and 0.42d̀Δ2θ, and equivalent illite crystallite sizes of 52 and 23 nm, respectively, determined by the Warren-Averbach method. Calibrating both old and new data will enable more reliable comparisons between similar and contrasting geological environments, and should improve the accuracy and reliability of correlations made between XRD data and other indicators of very low-grade metamorphism, hence increasing the value of such clay mineral studies.
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  • 74
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    Journal of metamorphic geology 12 (1994), S. 0 
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  • 75
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    Journal of metamorphic geology 12 (1994), S. 0 
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    Topics: Geosciences
    Notes: The Chicago mineral-carbonate oxygen isotope fractionation curves have been combined with mineral-water fractionation data for jadeite, zoisite and rutile and new data for grossular-water to provide a set of self-consistent mineral-pair calibrations. The A coefficients in the equation 1000 In α=A× 106T-2 of the new mineral-pair fractionations areJadeite Zoisite Grossular RutileQuartz 1.69 2.00 3.03 5.02Jadeite 0.31 1.34 3.33Zoisite 1.03 3.02Grossular 1.99The isotopic fractionation properties of natural pyralspite garnet [(Ca, Fe, Mg, Mn)3Al2Si3O12] can be approximated by those of the grossular end-member. Appropriate substitutions also yield coefficients for the solid-solution minerals: sodic pyroxene and epidote, e.g. A quartz-sodic pyroxene= 2.75 - 1.06Xjd, A quartz-epidote= 2.00 + 0.75Xpswhere XJd and XPs are the mole fractions of the jadeite and pistacite components, respectively.The new data set is particularly suitable for the geothermometry of metamorphic rocks. δ18O data from minerals of the high-pressure metamorphic rocks of the Sesia Zone of Italy and Cyclades Complex of Greece yield well-constrained mean temperatures of 572 and 478d̀ C, respectively. Type III blueschist metabasalts of the Franciscan Formation of California give mean quartz-garnet temperatures of 354d̀ C.
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  • 76
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    Journal of metamorphic geology 12 (1994), S. 0 
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    Topics: Geosciences
    Notes: Quantitative modelling of oxygen exchange by diffusion during slow cooling has been compared to the observed oxygen isotope distributions from high-grade metamorphic and granitic rocks of the High Himalayan Crystallines, Langtang Valley, central Nepal, in order to investigate the effect of retrograde diffusional exchange on the preservation of high-temperature, oxygen isotope systematics.Modelled fractionations, using water-present diffusion data reported in the literature, predict quartz-mica fractionations to be much larger than those at peak metamorphic and igneous conditions due to low closure temperatures for micas. Quartz-feldspar fractionations may be less than those at peak conditions, and in some samples may even be slightly negative.The observed oxygen isotope fractionations in the metamorphic rocks are small and largely appear to record equilibrations close to peak conditions determined by other methods. Hence these rocks clearly do not conform to predictions of fluid-present diffusional retrograde exchange. It is suggested that their retrograde history was therefore within an anhydrous closed system in which diffusion was slow and hence mineral closure temperatures were high. The granitic rocks record rather larger quartz-biotite fractionations, approaching those predicted by the diffusion modelling. However, quartz-feldspar fractionations are large and hence, although significant retrograde exchange has clearly occurred, simple diffusion alone is not sufficient to explain the observed data and open-system exchange may be required. The presence of fluids during the retrograde history of this part of the section is supported by petrographic evidence.The different retrograde oxygen exchange histories recorded between the regional metamorphic and magmatic regimes of the Langtang section would appear to support the importance of water on the kinetics of such exchange, and suggests that in its absence, diffusional exchange may become insignificant, allowing oxygen isotope thermometry to record meaningful high-temperature data.
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  • 77
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract At Kottavattam, southern Kerala (India), late Proterozoic homogeneous leptynitic garnet–biotite gneisses of granitic composition have been transformed on a decimetric scale into coarse-grained massive charnockite sensu stricto along a set of conjugate fractures transecting the gneissic foliation. Charnockitization post-dates the polyphase deformation, regional high-grade metamorphism and anatexis, and evidently occurred at a late stage of the Pan-African tectonothermal history. Geothermobarometric and fluid inclusion data document textural and chemical equilibration of the gneiss and charnockite assemblages at similar Plith–T conditions (650–700°C, 5–6 kbar) in the presence of carbonic fluids internally buffered by reaction with graphite and opaque mineral phases (XCO2= 0.7–0.6; XH2O= 0.2–0.3; XN2= 0.1; log fO2= -17.5).Mineralogical zonation indicates that charnockitization of the leptynitic gneiss involved first the breakdown of biotite and oxidation of graphite in narrow, outward-migrating transition zones adjacent to the gneiss, followed by the breakdown of garnet and the neoblastesis of hypersthene in the central charnockite zone. Compared to the host gneiss, the charnockite shows higher concentrations of K, Na, Sr, Ba and Zn and lower concentrations of Mg, Fe, Ti, V, Y, Zr and the HREE, with a complementary pattern in the narrow transition zones of biotite breakdown. The Plith–T–XH2O data and chemical zonation patterns indicate charnockitization through subsolidus-dehydration reaction in an open system. Subsequent residence of the carbonic fluids in the charnockite resulted in low-grade alteration causing modification of the syn-charnockitic elemental distribution patterns and the properties of entrapped fluids. We favour an internally controlled process of arrested charnockitization in which, during near-isothermal uplift, the release of carbonic fluids from decrepitating inclusions in the host gneiss into simultaneously developing fracture zones led to a change in the fluid regime from ‘fluid-absent’in the gneiss to ‘fluid-present’in the fracture zones and to the development of an initial fluid-pressure gradient, triggering the dehydration reaction.
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  • 78
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    Journal of metamorphic geology 12 (1994), S. 0 
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    Topics: Geosciences
    Notes: The assemblages chlorite-pumpellyite-lawsonite-albite-quartz, chlorite-lawsonite-quartz-epidote and chlorite-epidote-albite-quartz occur in metabasaltic blocks and veins in a metamorphosed tectonic mélange in the structurally highest unit of the autochthonous and parautochthonous section underlying the Semail ophiolite in Saih Hatat, north-east Oman. The pre-Permian basement of this section contains mafic units characterized by the assemblage crossite-epidote-chlorite-quartz-albite /el actinolite. These assemblages indicate a down-section increase in metamorphic grade from ‘lawsonite-albite facies' conditions in the mélange to ‘epidote-blueschist’ facies conditions in the basement.Application of empirically and experimentally based thermobarometers as well as petrogenetic grids calculated for a model basaltic system indicates that the P-T conditions of metamorphism ranged from 3 to 6 kbar and 250 to 300d̀ C for the mélange and P 〉 6.8 kbar, T 〉 310d̀ C for the basement units. Textural relations interpreted in the context of petrogenetic grids indicate that these units followed clockwise P-T paths of evolution. The estimated P-T conditions and down-section increase in metamorphic grade in central, western and northern Saih Hatat are consistent with the hypothesis relating metamorphism to the Late Cretaceous tectonic loading of the continental margin by an ophiolite slab 〈 18 km in thickness. These results contrast with field and petrological observations documented for blueschists and eclogites exposed along the eastern coast of Saih Hatat which may have formed at an earlier stage in response to an Early Cretaceous collisional event.
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  • 79
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    Journal of metamorphic geology 12 (1994), S. 0 
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract Large calcite veins and pods in the Proterozoic Corella Formation of the Mount Isa Inlier provide evidence for kilometre-scale fluid transport during amphibolite facies metamorphism. These 10- to 100-m-scale podiform veins and their surrounding alteration zones have similar oxygen and carbon isotopic ratios throughout the 200 × 10-km Mary Kathleen Fold Belt, despite the isotopic heterogeneity of the surrounding wallrocks. The fluids that formed the pods and veins were not in isotopic equilibrium with the immediately adjacent rocks. The pods have δ13Ccalcite values of –2 to –7% and δ18Ocalcite values of 10.5 to 12.5%. Away from the pods, metadolerite wallrocks have δ18Owhole-rock values of 3.5 to 7%. and unaltered banded calc-silicate and marble wallrocks have δ13Ccalcite of –1.6 to –0.6%, and δ18Ocalcite of 18 to 21%. In the alteration zones adjacent to the pods, the δ18O values of both metadolerite and calc-silicate rocks approach those of the pods. Large calcite pods hosted entirely in calc-silicates show little difference in isotopic composition from pods hosted entirely in metadolerite. Thus, 100- to 500-m-scale isotopic exchange with the surrounding metadolerites and calc-silicates does not explain the observation that the δ18O values of the pods are intermediate between these two rock types. Pods hosted in felsic metavolcanics and metasiltstones are also isotopically indistinguishable from those hosted in the dominant metadolerites and calc-silicates. These data suggest the veins are the product of infiltration of isotopically homogeneous fluids that were not derived from within the Corella Formation at the presently exposed crustal level, although some of the spread in the data may be due to a relatively small contribution from devolatilization reactions in the calc-silicates, or thermal fluctuations attending deformation and metamorphism. The overall L-shaped trend of the data on plots of δ13C vs. δ18O is most consistent with mixing of large volumes of externally derived fluids with small volumes of locally derived fluid produced by devolatilization of calc-silicate rocks. Localization of the vein systems in dilatant sites around metadolerite/calc-silicate boundaries indicates a strong structural control on fluid flow, and the stable isotope data suggest fluid migration must have occurred at scales greater than at least 1 km. The ultimate source for the external fluid is uncertain, but is probably fluid released from crystallizing melts derived from the lower crust or upper mantle. Intrusion of magmas below the exposed crustal level would also explain the high geothermal gradient calculated for the regional metamorphism.
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  • 81
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    Journal of metamorphic geology 11 (1993), S. 0 
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  • 82
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Notes: Abstract The widespread khondalite series of south-east Inner Mongolia consists largely of biotite–sillimanite–garnet gneiss and quartzo-feldspathic gneiss with some marble and mafic granulite layers. It has experienced two metamorphic events at c. 2500 and 1900–2000 Ma.A pre-peak stage of the first metamorphism at T= 600–700°C and P 〉 6–7 kbar is recognized by the relict amphibolite facies assemblage Ky–Grt–Bt–Pl–Qtz and ‘protected’inclusions of biotite, hornblende, sodic plagioclase and quartz in garnet or orthopyroxene. The peak stage, with T=c. 800 ± 50°C and P 8–10 kbar, is characterized by the widespread granulite facies assemblages Sil–Grt–Bt–Kfs–Pl–Qtz in gneiss and Opx–Cpx–Pl ± Hbl ± Grt in granulite. The P–T–t path suggests that the supracrustal sequence was buried in the lower crust by tectonic thickening during D1–D2.The beginning of the second metamorphism is characterized by further temperature rise to 700°C or more at lower pressure. This stage is manifested by the appearance of cordierite after garnet, fibrolite (Sil2) after biotite in gneiss and transformation of Hbl1 into Opx2 and Cpx2 in granulite. Coronas of symplectitic Opx2 + Pl2 surrounding Grt1 and Cpx1 in mafic granulite are interpreted as products of near-isothermal decompression. The P–T–t path may be related tectonically to waning extension of the crust by the end of the early Proterozoic.
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Notes: Abstract The Qinling–Dabie accretionary fold belt in east-central China represents the E–W trending suture zone between the Sino-Korean and Yangtze cratons. A portion of the accretionary complex exposed in northern Hubei Province contains a high-pressure/low-temperature metamorphic sequence progressively metamorphosed from the blueschist through greenschist to epidote–amphibolite/eclogite facies. The ‘Hongan metamorphic belt’can be divided into three metamorphic zones, based on progressive changes in mineral assemblages: Zone I, in the south, is characterized by transitional blueschist–greenschist facies; Zone II is characterized by greenschist facies; Zone III, in the northernmost portion of the belt, is characterized by eclogite and epidote–amphibolite facies sequences. Changes in amphibole compositions from south to north as well as the appearance of increasingly higher pressure mineral assemblages toward the north document differences in metamorphic P–T conditions during formation of this belt. Preliminary P–T estimates for Zone I metamorphism are 5–7 kbar, 350–450°C; estimates for Zone III eclogites are 10–22 kbar, 500 ± 50°C.The petrographic, chemical and structural characteristics of this metamorphic belt indicate its evolution in a northward-dipping subduction zone and subsequent uplift prior to and during the final collision between the Sino-Korean and Yangtze cratons.
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  • 84
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract The Lancang metamorphic terrane consists of an eastern low-P/T belt and a western high-P/T belt divided by a N–S-trending fault. Protoliths of both units are mid–late Proterozoic basement and its cover. The low-P/T belt includes the Permian Lincang batholith, related amphibolite facies rocks of the Damenglong and Chongshan groups, and Permo-Triassic volcanic and volcaniclastic rocks. Most whole-rock Rb–Sr isochron and U–Pb zircon ages of the Lincang batholith are in the range 290–279 and 254–212 Ma, respectively. Metamorphism of the low-P/T belt reaches upper amphibolite with local granulite facies (735°C at 5 kbar), subsequently retrogressed at 450–500°C during post-Triassic time. The high-P/T rocks grade from west to east from blueschist through transitional blueschist/greenschist to epidote amphibolite facies. Estimated P–T conditions follow the high-P intermediate facies series up to about 550–600°C, at which oligoclase is stable. The 40Ar/39Ar plateau age of sodic amphibole in blueschist is 279 Ma.The paired metamorphic belts combined with the spatial and temporal distribution of other blueschist belts lead us to propose a tentative tectonic history of south-east Asia since the latest Precambrian. Tectonic juxtaposition of paired belts with contrasting P–T conditions, perhaps during collision of the Baoshan block with south-east Asia, suggests that an intervening oceanic zone existed that has been removed. The Baoshan block is a microcontinent rifted from the northern periphery of Gondwana. Successive collision and amalgamation of microcontinents from either Gondwana or the Panthalassan ocean resulted in rapid southward continental growth of c. 500 km during the last 200 Ma. Hence, the Lancang region in south-east Asia represents a suture zone between two contrasting microcontinents.
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  • 85
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Notes: Abstract The high-grade metamorphic rocks of southern Brittany underwent a complex tectonic evolution under various P-T conditions (high-P, high-T), related to stacking of nappes during Palaeozoic continentcontinent collision.The east to west thrusting observed in the whole belt is strongly perturbed by vertical movements attributed to the ascent of anatectic granites in the high-T area. The field reconstruction of subvertical, closed elliptical structures in gneisses and migmatites, associated with the subhorizontal, doubly radial pattern of stretching lineation in the mica schists, suggests the existence of an elliptical diapiric body buried at depth beneath the present erosion level.Deformation is associated with a complex P-T evolution partly recorded in aluminous gneisses (kinzigites, e.g. morbihanites). A chronology of successive episodes of mineral growth at different compositions is established by detailed studies of the mineral-microstructure relationships in X-Z sections, using the deformation-partitioning concept (low- and high-strain zones).Several thermometric and barometric calibrations are applied to mineral pairs either in contact or not in contact but in equivalent microstructiiral positions with respect to the deformation history. This methodology provides a continuous microstructural control of P-T variations through time and leads to three P-T-t-d paths constructed from numerous successive P-T estimations. Path 1 is a clockwise retrograde path preserved in low-strain zones, which records general exhumation movements after crustal thickening. Paths 2 and 3 are clockwise prograde/retrograde paths from high-strain zones; they are interpreted and discussed in the light of models of crustal anatexis and upward movement of magma (diapirism). Deformation and P-T effects induced by diapirism can be distinguished from the general deformation-metamorphic history of a belt, and would seem to be produced during a late stage of its history.The present microstructural-petrological approach to defining successive mineral equilibria in relation to progressive deformation steps provides a far more accurate evaluation of the metamorphic evolution than is possible by ‘standard’thermobarometry.
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    Journal of metamorphic geology 11 (1993), S. 0 
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    Topics: Geosciences
    Notes: Abstract The metamorphic history of the Middle to Upper Jurassic volcanic and hypabyssal rocks exposed in the Klamath Mountains and Sierra Nevada of California is related, in part, to the rifting of a volcano-plutonic arc. The Callovian to Kimmeridgian rocks exposed in the region consist of, from north-west to south-east, a back-arc ophiolite, a rifted volcanic arc and a volcanic arc complex. All of these units have been metamorphosed and contain various combinations of the phases chlorite, amphibole, epidote, prehnite and pumpellyite. Projection of coexisting phases onto the composition plane MgO/(MgO + FeO) and Al2O3+ Fe2O3 - 0.75 CaO - Na2O through quartz, water, albite and epidote results in consistent mineralogical compatibilities within each region, but crossing tie-lines between regions. This suggests that the volcanic and hypabyssal rocks from each region have equilibrated under different intensive conditions.The back-arc ophiolite in the north has suffered subseafloor high-T/P hydrothermal metamorphism with geothermal gradients on the order of 100° C km−1. The rifted volcanic arc has undergone synchronous burial, hydrothermal and contact metamorphism. Metamorphic field gradients in the region pass through the prehnite-pumpellyite and greenschist facies suggesting geothermal gradients on the order of 30° C km−1. The southernmost volcanic arc complexes contain metavolcanics of the pumpellyiteactinolite and greenschist facies suggesting moderate- to high-P/T metamorphism and geothermal gradients on the order of 20° C km−1.The apparent increase in rifting and calculated geothermal gradients from south-east to north-west suggest that the observed very low- and low-grade metamorphism may be a response to enhanced thermal gradients during extension of the volcanic arc. This correlation between the extent of rifting and metamorphism is consistent with a model of diastathermal metamorphism of a propagating rift along the western margin of North America during the Late Jurassic. The plate tectonic setting may be analogous to the present-day Andaman Sea region.
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    Notes: Abstract The Upper Cretaceous and Tertiary volcanic sequences in the Chilean Andes are affected by burial metamorphism. For example, in central Chile (between 32°30’and 35°S), the Abanico Formation, a folded upper Cretaceous to Palaeogene unit composed of basic lavas, tuffs and ash flows of intermediate composition and volcaniclastic sandstones, is characterized by heulandite- to laumontite-bearing zeolite facies assemblages in its upper part passing with depth to prehnite–pumpellyite facies assemblages.However, at c. 33°30'S in the Abanico Hill area, located just east of a graben at Santiago (the longitudinal Central Valley), the alteration pattern is unrelated to stratigraphic depth. It is characterized by a lateral increase in grade defined by assemblages with yugawaralite (reported for the first time in the Andes) laumontite, then wairakite ± epidote, and finally with abundant epidote successively closer to the graben boundary. This pattern was formed in a palaeogeothermal system with a high-T and a very low-P gradient. Geothermal alteration has also been inferred from the border zone of a Neogene caldera in the Abanico Hill area, and from the western fault boundary of the graben.These expressions of geothermal alteration, together with the occurrence of caldera structures, the huge volume of ignimbrites and numerous epithermal precious metal deposits of late Cretaceous and Tertiary age in central and northern Chile, suggest that fossil geothermal systems of this age are probably common features in the Chilean Andes.
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    Notes: Abstract Petrological, oxygen isotope and 40Ar/39Ar studies were used to constrain the Tertiary metamorphic evolution of the lower tectonic unit of the Cyclades on Tinos. Polyphase high-pressure metamorphism reached pressures in excess of 15 kbar, based on measurements of the Si content in potassic white mica. Temperatures of 450–500° C at the thermal peak of high-pressure metamorphism were estimated from critical metamorphic assemblages, the validity of which is confirmed by a quartz–magnetite oxygen isotope temperature of 470° C. Some 40Ar/39Ar spectra of white mica give plateau ages of 44–40 Ma that are considered to represent dynamic recrystallization under peak or slightly post-peak high-pressure metamorphic conditions. Early stages in the prograde high-pressure evolution may be documented by older apparent ages in the high-temperature steps of some spectra.Eclogite to epidote blueschist facies mineralogies were partially or totally replaced by retrograde greenschist facies assemblages during exhumation. Oxygen isotope thermometry of four quartz–magnetite pairs from greenschist samples gives temperatures of 440–470° C which cannot be distinguished from those deduced for the high-pressure event. The exhumation and overprint is documented by decreasing ages of 32–28 Ma in some greenschists and late-stage blueschist rocks, and ages of 30–20 Ma in the lower temperature steps of the Ar release patterns of blueschist micas. Almost flat parts of Ar–Ar release spectra of some greenschist micas gave ages of 23–21 Ma which are assumed to represent incomplete resetting caused by a renewed prograde phase of greenschist metamorphism.Oxygen isotope compositions of blueschist and greenschist facies minerals show no evidence for the infiltration of a δ18O-enriched fluid. Rather, the compositions indicate that fluid to rock ratios were very low, the isotopic compositions being primarily controlled by those of the protolith rocks. We assume that the fundamental control catalysing the transformation of blueschists into greenschists and the associated resetting of their isotopic systems was the selective infiltration of metamorphic fluid. A quartz–magnetite sample from a contact metamorphic skarn, taken near the Miocene monzogranite of Tinos, gave an oxygen isotope temperature of 555° C and calculated water composition of 9.1%. The value of δ18O obtained from this water is consistent with a primary magmatic fluid, but is lower than that of fluids associated with the greenschist overprint, which indicates that the latter event cannot be directly related to the monozogranite intrusion.
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    Notes: Abstract Orthopyroxene-bearing migmatites, exposed at the summit of Cone Peak in the Santa Lucia Range, California, offer an opportunity to explore potential links between granulite facies metamorphism and migmatite formation. Geothermobarometry indicates that the metamorphic temperatures and pressures were in the approximate ranges of 700–750° C and 7.0–7.5 kbar. The rocks at the summit comprise three domains: relatively coarse-grained, leucocratic veins; relatively fine-grained, biotite-enriched zones at the margins of the veins; and a biotite–hornblende-bearing host rock. Orthopyroxene is concentrated in the veins, which have also the highest ratio of anhydrous to hydrous minerals of the three rock types. The composition of the veins, together with their textures and modes, suggest that they formed through anatexis involving a dehydration-melting reaction which consumed hornblende and produced orthopyroxene. Variability in mineralogy and composition indicates that there was some local migration of magma along the veins before their final solidification. The biotite-enriched zones formed either by the concentration of residual biotite at the margins of the vein, or through the metasomatic conversion of hornblende (and/or pyroxene) to biotite, or by a combination of the two processes. Significant differences in the chemistry of the neosome (vein + biotite-enriched zone) and the host rock rule out simple dehydration melting in a local closed system. The model that explains best the mineralogical and chemical patterns involves triggering of melting by an influx of a low-aH2O mixed fluid which added K and Si to and removed Ca from the neosome.
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    Topics: Geosciences
    Notes: Abstract In the Adirondack Highlands of New York State, the effect of granulite facies metamorphism on the physical and isotopic characteristics of zircon from anorogenic plutonic rocks has a distinct geographical pattern. The location of zircon populations which appear to have been altered describes a roughly circular area where metamorphic palaeotemperatures have been determined to be in excess of 750° C. Zircons from anorogenic plutonic rocks outside this area were undisturbed during metamorphism and yield well constrained ages.Granitic, charnockitic and mangeritic anorogenic plutonic rocks peripheral to the Marcy anorthosite massif have large, euhedral, prismatic zircons that display fine, internal, magmatic growth zonations and abundant, randomly orientated, mineral inclusions. Co-genetic zircon fractions yield linear discordant arrays and well constrained upper intercepts of 1125–1157 Ma. Metamorphic zircon is limited to sporadically developed and volumetrically insignificant, clear, low-U overgrowths or protuberances.In marked contrast, zircons from petrographically and geochemically identical rocks adjacent to, or within, the Marcy anorthosite massif are typically large, limpid, anhedral to subhedral crystals or crystal fragments lacking internal features except for tubular cavities and CO-2-rich inclusions. Co-genetic zircon fractions yield nearly concordant, non-linear clusters with 207Pb/206Pb minimum ages of 1073–1095 Ma. Metamorphic overgrowths cannot be readily identified by optical or cathodoluminscence techniques; however, many grains show complex and unusual external boundaries suggestive of post-crystallization modification.These data indicate that temperatures as low as 750° C, in combination with other factors, may have been sufficient to facilitate recrystallization, and diffusion of radiogenic Pb from the zircon crystal structure, during the complex, protracted metamorphism of the Adirondack Highlands.
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  • 92
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    Journal of metamorphic geology 11 (1993), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract Archaean greenstone belts are often cut by major shear zones, for example the Cadillac tectonic zone (CTZ) of the southern Abitibi region in north-western Quebec. At McWatters, the CTZ contains slices of metavolcanic units bounded by corridors of highly strained and altered rocks. Mineral assemblages of the metabasites record the metamorphic evolution of the CTZ.The McWatters metabasalts and metagabbros have similar chemistry but different mineral assemblages consisting of variable amounts of actinolite, hornblende, chlorite, albite, epidote, quartz, carbonates, titanite, biotite, rutile, magnetite, ilmenite and sulphides. The different mineral assemblages, which coexist in a single tectonic slice, can be divided into three types, characterized by (A) presence of hornblende and actinolite, (B) presence of actinolite and epidote, and (C) absence of amphibole and epidote. Partial replacements indicate that these mineral assemblages are not in equilibrium. The hornblende of the least altered and deformed samples of the type A assemblage is a relict of a prograde metamorphic event, contemporaneous with the development of the main schistosity. The prograde conditions are estimated at P= 5 kbar, T= 475° C with low Pf. The more altered and deformed samples of the type C assemblage record a later retrograde metamorphic event. Conditions of the later event are estimated at P= 4 kbar, T= 400° C with higher Pf. Widespread calcite precipitation occurred during a later episode. The diversity of the mineral assemblages results from permeability variations along the high-strain zones of the CTZ.
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  • 93
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    Journal of metamorphic geology 11 (1993), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Abstract Mineral equilibria in the system CaO–MgO–Al2O3–SiO2–H2O provide a basis for mapping of four reaction isograds and one bathograd in the low-pressure transition from subgreenschist to greenschist facies. Most of the Matachewan area of the Abitibi greenstone belt is in the lower-pressure bathozone, as indicated by the widespread occurrences of the subassemblage Prh–Chl. The higher-pressure bathozone is indicated by two occurrences of Pmp–Act–Ep–Qtz, but in these samples the bathograd is displaced to anomalously low pressure by the high Fe content of the coexisting minerals. This illustrates the need to analyse coexisting minerals, calculate activities of end-member species, and compute P–T curves for individual samples before interpreting the isograd/bathograd pattern.Petrographic and microprobe analysis indicates that great care must be taken in the selection of ‘equilibrium’ assemblages. Pyroxene phenocrysts in one sample are replaced by the assemblage Pmp–Act–Ep–Chl–Qtz, whereas Prh–Act–Ep–Chl–Qtz occurs in the groundmass. Compositional variation may be more cryptic, as in a sample of metabasaltic hyaloclastite that contains two spatially distinct ‘univariant’ assemblages, Prh–Pmp–Ep–Chl–Qtz and Prh–Act–Ep–Chl–Qtz, within the devitrified matrix. Whereas chlorite compositions are similar in both assemblages, prehnite and epidote in the latter assemblage are significantly richer in Fe and poorer in Al. Accordingly, the rock is interpreted to contain two distinct ‘univariant’ assemblages, rather than one ‘invariant’ assemblage (Prh–Pmp–Act–Ep–Chl–Qtz). The displaced ‘univariant’ curves for this sample intersect at 2.2 kbar and 250°C.Taking account of all thermobarometric implications, the low-grade limit of the greenschist facies is at 250–270°C and 2–2.5 kbar, corresponding to depths of 7–8 km. Comparison of apparent P–T conditions on both sides of the Larder Lake – Cadillac break, a regional CO2-metasomatized fault zone that is spatially associated with many Archaean gold deposits, provides an upper limit of not more than c. 1 km for post-metamorphic south-side-up, dip-slip displacement.
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  • 94
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    Journal of metamorphic geology 10 (1992), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: CO2–CH4 fluid inclusions are present in anatectic layer-parallel leucosomes from graphite-bearing metasedimentary rocks in the Skagit migmatite complex, North Cascades, Washington. Petrological evidence and additional fluid inclusion observations indicate, however, that the Skagit Gneiss was infiltrated by a water-rich fluid during high-temperature metamorphism and migmatization.CO2-rich fluid inclusions have not been observed in Skagit metasedimentary mesosomes or melanosomes, meta-igneous migmatites, or unmigmatized rocks, and are absent from subsolidus leucosomes in metasedimentary migmatites. The observation that CO2-rich inclusions are present only in leucosomes interpreted to be anatectic based on independent mineralogical and chemical criteria suggests that their formation is related to migmatization by partial melting. Although some post-entrapment modification of fluid inclusion composition may have occurred during decompression and deformation, the generation of the CO2-rich fluid is attributed to water-saturated partial melting of graphitic metasedimentary rocks by a reaction such as biotite + plagioclase + quartz + graphite ± Al2SiO5+ water-rich fluid = garnet + melt + CO2–CH4. The presence of CO2-rich fluid inclusions in leucosomes may therefore be an indication that these leucosomes formed by anatexis.Based on the inferences that (1) an influx of fluid triggered partial melting, and (2) some episodes of fluid inclusion trapping are related to migmatization by anatexis, it is concluded that a free fluid was present at some time during high-temperature metamorphism. The infiltrating fluid was a water-rich fluid that may have been derived from nearby crystallizing plutons. Because partial melting took place at pressures of at least 5 kbar, abundant free fluid may have been present in the crust during orogenesis at depths of at least 15 km.
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  • 95
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    Journal of metamorphic geology 10 (1992), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
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  • 96
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    Journal of metamorphic geology 10 (1992), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
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  • 97
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    Journal of metamorphic geology 10 (1992), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: The solid-solid reaction magnesiocarpholite = sudoite + quartz has been bracketed between 350 and 500°C, 6.3 and 7.8 kbar. Because it is impossible to synthesize end-member sudoite, all experiments were carried out using natural minerals as starting materials. Although mineral compositions were very close to those of the end-members, the effect of the fluorine content in carpholite was significant. Particularly in those experiments where sudoite grows at the expense of carpholite, electron microprobe analysis of the run products shows that a more stable F-rich carpholite crystallizes too, and consumes the fluorine released in solution by the breakdown of the original carpholite.Our experimental results are combined, through a thermodynamic analysis, with a previous data set and with previous experimental data concerning the relative stability of chlorite, talc and magnesiocarpholite with excess of quartz and water as a function of P–T and AlAl(SiMg)-1 substitutions in phyllosilicates. This allows us to constrain the feasible thermodynamic parameters (H°f, sud; S° sud) and (H°f,car; S°car) for the Mg end-members. Using the partition coefficients calculated from natural parageneses, we have computed a petrogenetic grid for the system FeO–MgO–Al2O3–SiO2–H2O. It demonstrates that parageneses involving sudoite and carpholite can be used as indicators of P–T conditions, up to 600° C, 8 kbar for sudoite, and at higher pressure for carpholite.
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  • 98
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    Journal of metamorphic geology 10 (1992), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
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  • 99
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    Journal of metamorphic geology 10 (1992), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Regional-scale mapping of index-mineral isograds in mafic units of the early Proterozoic Cape Smith Thrust Belt (northern Québec) has revealed contrasting pressure-temperature regimes associated with two distinct structural domains. In the southern domain, crustal thickening was accomplished by early, piggy-back thrust faults. Isograds cross-cut the thrusts, indicating that thermal-peak mineral growth outlasted deformation associated with early imbrication. Mineral zones are: (1) actinolite (Act) + albite (Alb); (2) hornblende (Hbl) + Act + Alb; (3) Hbl + Act + oligoclase (Oli); (4) Hbl + Oli; and (5) garnet (Grt) or clinopyroxene + Hbl + Oli-andesine. The oligoclase isograd occurs at higher grade than the hornblende isograd, a sequence typical of medium-pressure terranes (5–7 kbar). An Hbl-Alb bathograd. calibrated from mixed-volatile equilibria in the NCMASH-CO2 model system, suggests minimum pressures of about 5.4 kbar.Metamorphism in the northern domain was a consequence of re-imbrication, by means of out-of-sequence thrust faults active during and after peak metamorphic conditions. Mineral growth was coeval with thrusting, as documented by the syn-kinematic garnet porphyroblasts. Compared to the southern domain, a different sequence of isograds in mafic rocks shows that the albite-oligoclase transition takes place in the garnet zone. Based on thermobarometry in garnet-hornblende rocks, the oligoclase isograd occurs in a temperature range of 525–600°C, typical of high-pressure terranes (7–10 kbar). Calibrated bathograds for the Hbl-Ms-Alb and Grt-Alb bathozonal assemblages, respectively in the KNCMASH-CO2 and NCMASH model systems, indicate minimum pressures in the northern domain of 6.7 and 8.5 kbar. Higher-pressure series for this domain are explained by out-of-sequence thrusts exposing deeper crustal levels. For similar structural levels, only minor amounts of syn-deformational uplift (1–2 kbar and 50–75°C) are recorded in metabasites of this domain, compared to results in adjacent metapelites of the area (essentially isothermal uplift of 3–5 kbar).RESUME La bande du Cap Smith (nord du Québec) est une ceinture de chevauchement d'ǎge protérozoique inférieur, dominée par des roches mafiques. La cartographie d'isogrades à minéraux indicateurs dans les unités mafiques de la ceinture a révelé deux régimes contrastes de pression–température, chacun associéà des épisodes distincts d'épaississement crustal. Dans le domaine sud, des failles de chevauchement en-série sont responsables pour l'empilement tectonique. Les isogrades recoupent les failles, indiquant que l'apogée thermale a suivi l'emplacement initial des nappes de charriage. Les zones minérales sont: (1) actinote (Act) + albite (Alb); 2) hornblende (Hbl) + Act + Alb; (3) Hbl + Act + oligoclase (Oli); 4) Hbl + Oli; et (5) grenat (Grt) où clinopyroxene + Hbl + Oli-andésine. L'isograde d'oligoclase apparaǐt à plus haute température que l'isograde d'hornblende, une séquence typique des terrains de pressions moyennes. Un bathograde Hbl–Alb, calibréà partir d'équilibre mixte de volatiles dans le système NCMASH–CO2, suggère des pressions minimales d'environ 5.4 kbar.Le métamorphisme dans le domaine nord de la ceinture a été le résultat d'une réimbrication, causé par des chevauchements hors-série actifs pendant et après l'apogée thermale. La croissance minérale fǔt synchrone au chevauchement, documentée par des porphyroblastes de grenat syn-cinénatique. Comparé au domaine sud, une différente séquence d'isogrades dans les métabasaltes montre que la transition albite–oligoclase se situé dans la zone à grenat. Par la thermobarométrie dans les roches à grenat–hornblende l'isograde d'oligoclase se situe dans un écart de température de 525–600°C, typique des terrains de hautes pressions (7–10 kbar). Des bathogrades calibrés pour les assemblages bathozonales Hbl–Ms–Alb et Grt–Alb, rcspectivement dans les systèmes KNCMASH–CO2 et NCMASH, indique des pression minimales pour le domaine nord de 6.7 et 8.5 kbar. Une zonégraphie à plus haute pression pour ce domaine est expliquée par des chevauchements hors-série exposant des niveaux plus inférieurs de la croǔte imbriqué. Pour des niveaux structuraux similaries, des soulèvements syn-métamorphiques mineurs sont enregistrés dans les métabasaltes (1–2 kbar et 50–75°C), comparés aux métapélites adjacentes avec un soulèvement (essentially isothermal uplift of 3–5 kbar.
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  • 100
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    Journal of metamorphic geology 10 (1992), S. 0 
    ISSN: 1525-1314
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Geosciences
    Notes: Mid-Cretaceous granulite gneisses crop out in a narrow belt in the Cucamonga region of the south-eastern foothills of the San Gabriel Mountains, southern California. Interlayered mafic granulites and pelitic, carbonate, calc-silicate and quartzofeldspathic metasediments record hornblende granulite subfacies metamorphism at approximately 8 kbar and 700–800°C. Regional deformation and formation of banded gneisses ceased by c. 108 Ma. although mafic-intermediate magmatism and high-grade metamorphism continued locally as late as c. 88 Ma. Garnet zoning in metapelitic gneisses suggests that peak metamorphism was followed locally by a period of near-isobaric cooling, but this interpretation requires diachronous cooling of the granulite belt which cannot be demonstrated without detailed thermo-chronological data. It is more likely that the entire terrane remained at granulite facies P–T conditions until 88 Ma, followed by rapid uplift associated with juxtaposition against adjacent middle and upper crustal arc terranes. Uplift occurred between c. 88 and 78 Ma at rates of approximately 1–2 km Ma-1. The geotectonic evolution of the Cucamonga granulites is similar to mid-Cretaceous high-P granulites in the Sierra Nevada and Salinian block of central California. Late Cretaceous uplift common to these granulites may provide an important tectonic link between dismembered Mesozoic batholithic terranes in the California Cordillera.
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